Psyllid ID: psy16240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MEHPPPSPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR
cccccccccccccEEEEEEcccEEEcccEEEEEEcccccccEEEEEEEEcccccEEEEEccccEEEEEccccEEEcccccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEEEccEEEEEcccEEEEccccccccEEEEEEEcccccEEEEEEccccEEEEEccccEEEcccccccccEEEEEEccccEEEEEcccccEEEEccccEEEEEccccccccEEEEEEEcccEEEEEEcccEEEEEcccccccEEEEccccccEEEEEEccccEEEEEccccc
ccccccccccccEEEEEEccccEEEEcccEEEccccccccccEEEEEEEccccEEEEEEccccEEEEcccccEEEccccccccccccEEEEEEcccccccccccEEcccccEEEEEEcccEEEEEEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccEEEEcccccccccEEEEEEEcccEEEEEEcccEEEEEccccEEEEcccccccccEEEEEEEcccEEEEEccccEEEEEccccccccEccccccccEEEEEEccccEEEEEccccc
mehpppspqenpkyatvslfplsflssgvdvtanqeeisdhetfqlefdpstkrWYIRTMQDRYWtletgggmieeesrlfsnpskvRTVLQYLEVKIQYFYGlyctdkpskfkiysvplsflssgvdvtanqeeisdhetfqlefdpstkrWYIRTMQDRYwtletgggiqasgdkkssnaLYDLVWQGDGSVALRAnngkfiatkrsghlyansdsaddscryYFYLINRPILVLKCEqgfvgfktgannslRLECNKANYETIQVeradrgvvyfkgksar
mehpppspqenpkYATVSLFPLSFLSSGVDVTANQeeisdhetfqlefdpstkrWYIRTMQDRYWTLETGGGMIeeesrlfsnpskVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQeeisdhetfqlefdpstkRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFiatkrsghlyansdsaDDSCRYYFYLINRPILVLKCEQGFVGFKTgannslrlECNKANYetiqveradrgvvyfkgksar
MEHPPPSPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR
**************ATVSLFPLSFLSSGVDVTAN***ISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQA*******NALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYF******
*********ENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEE******NPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGG*********SSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGK***
***********PKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR
********QENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGK***
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
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MEHPPPSPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q24524512 Protein singed OS=Drosoph yes N/A 0.609 0.337 0.593 5e-59
Q16658493 Fascin OS=Homo sapiens GN yes N/A 0.503 0.290 0.408 8e-28
Q61553493 Fascin OS=Mus musculus GN yes N/A 0.503 0.290 0.401 5e-27
P85845493 Fascin OS=Rattus norvegic yes N/A 0.503 0.290 0.394 2e-26
O18728492 Fascin-2 OS=Bos taurus GN no N/A 0.538 0.310 0.386 2e-24
Q32M02492 Fascin-2 OS=Mus musculus no N/A 0.538 0.310 0.373 1e-23
O14926492 Fascin-2 OS=Homo sapiens no N/A 0.531 0.306 0.378 4e-23
Q91837483 Fascin OS=Xenopus laevis N/A N/A 0.489 0.287 0.377 7e-22
Q05634496 Fascin OS=Strongylocentro yes N/A 0.5 0.286 0.331 2e-14
Q9QXW4498 Fascin-3 OS=Mus musculus no N/A 0.598 0.341 0.267 1e-08
>sp|Q24524|SING_DROME Protein singed OS=Drosophila melanogaster GN=sn PE=3 SV=1 Back     alignment and function desciption
 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 139/177 (78%), Gaps = 4/177 (2%)

Query: 110 PSKFKIYSVPLSFLS--SGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLET 167
           P    I  + L ++S   GVDVTANQ+E+ ++ETFQLE+D S  RW +RT QDRYW L  
Sbjct: 275 PQASFIAGLNLRYVSVKQGVDVTANQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSA 334

Query: 168 GGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF 227
           GGGIQA+G+++ ++AL++L+W GDGS++ RANNGKF+ATKRSGHL+A S+S ++  ++YF
Sbjct: 335 GGGIQATGNRRCADALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYF 394

Query: 228 YLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR 284
           YLINRPILVLKCEQGFVG++T  N  L+LECNKA YETI VERA +G+V+ K  S +
Sbjct: 395 YLINRPILVLKCEQGFVGYRTPGN--LKLECNKATYETILVERAQKGLVHLKAHSGK 449
Probably acts as an actin bundling protein. May have a role in the asymmetric organization and/or movement of cytoplasmic components. It has a role in somatic cells during the formation of adult bristles and hairs, and in the female germline during oogenesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q16658|FSCN1_HUMAN Fascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3 Back     alignment and function description
>sp|Q61553|FSCN1_MOUSE Fascin OS=Mus musculus GN=Fscn1 PE=1 SV=4 Back     alignment and function description
>sp|P85845|FSCN1_RAT Fascin OS=Rattus norvegicus GN=Fscn1 PE=1 SV=2 Back     alignment and function description
>sp|O18728|FSCN2_BOVIN Fascin-2 OS=Bos taurus GN=FSCN2 PE=2 SV=1 Back     alignment and function description
>sp|Q32M02|FSCN2_MOUSE Fascin-2 OS=Mus musculus GN=Fscn2 PE=2 SV=1 Back     alignment and function description
>sp|O14926|FSCN2_HUMAN Fascin-2 OS=Homo sapiens GN=FSCN2 PE=1 SV=1 Back     alignment and function description
>sp|Q91837|FASC_XENLA Fascin OS=Xenopus laevis GN=fscn PE=2 SV=1 Back     alignment and function description
>sp|Q05634|FASC_STRPU Fascin OS=Strongylocentrotus purpuratus PE=1 SV=3 Back     alignment and function description
>sp|Q9QXW4|FSCN3_MOUSE Fascin-3 OS=Mus musculus GN=Fscn3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
193700169 520 PREDICTED: protein singed-like [Acyrthos 0.552 0.301 0.786 2e-72
242005783 514 protein singed, putative [Pediculus huma 0.563 0.311 0.771 6e-71
91089337 518 PREDICTED: similar to fascin [Tribolium 0.563 0.308 0.753 3e-70
357625790 513 putative fascin [Danaus plexippus] 0.552 0.306 0.753 8e-68
321475220 507 hypothetical protein DAPPUDRAFT_308484 [ 0.841 0.471 0.511 5e-64
307182196 524 Protein singed [Camponotus floridanus] 0.563 0.305 0.718 4e-63
156551822 517 PREDICTED: protein singed-like [Nasonia 0.563 0.309 0.704 5e-63
66549818 521 PREDICTED: protein singed [Apis mellifer 0.563 0.307 0.706 1e-62
340727495 522 PREDICTED: protein singed-like [Bombus t 0.563 0.306 0.706 2e-62
307199434 525 Protein singed [Harpegnathos saltator] 0.563 0.304 0.706 4e-62
>gi|193700169|ref|XP_001949866.1| PREDICTED: protein singed-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%), Gaps = 2/159 (1%)

Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
           GVDVTANQ+EISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQA  DKKSSNAL++
Sbjct: 302 GVDVTANQDEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQAVADKKSSNALFE 361

Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
           L WQGDGSV  RANNGK+++TKRSGHLYAN D+ DD+C+Y+FYLINRPILVLKC+QGFVG
Sbjct: 362 LAWQGDGSVCFRANNGKYVSTKRSGHLYANVDAIDDACKYFFYLINRPILVLKCDQGFVG 421

Query: 246 FKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR 284
           +K+ +   LRLECNKA+YETIQVER+D+G+V+FKG++ +
Sbjct: 422 YKSSS--GLRLECNKASYETIQVERSDKGIVFFKGQTNK 458

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242005783|ref|XP_002423740.1| protein singed, putative [Pediculus humanus corporis] gi|212506942|gb|EEB11002.1| protein singed, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91089337|ref|XP_972494.1| PREDICTED: similar to fascin [Tribolium castaneum] gi|270012518|gb|EFA08966.1| hypothetical protein TcasGA2_TC006673 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357625790|gb|EHJ76110.1| putative fascin [Danaus plexippus] Back     alignment and taxonomy information
>gi|321475220|gb|EFX86183.1| hypothetical protein DAPPUDRAFT_308484 [Daphnia pulex] Back     alignment and taxonomy information
>gi|307182196|gb|EFN69530.1| Protein singed [Camponotus floridanus] Back     alignment and taxonomy information
>gi|156551822|ref|XP_001604095.1| PREDICTED: protein singed-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66549818|ref|XP_396175.2| PREDICTED: protein singed [Apis mellifera] Back     alignment and taxonomy information
>gi|340727495|ref|XP_003402078.1| PREDICTED: protein singed-like [Bombus terrestris] gi|350422971|ref|XP_003493345.1| PREDICTED: protein singed-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307199434|gb|EFN80047.1| Protein singed [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
FB|FBgn0003447512 sn "singed" [Drosophila melano 0.609 0.337 0.593 2.9e-55
UNIPROTKB|Q3MHK9493 FSCN1 "Fascin" [Bos taurus (ta 0.542 0.312 0.402 1.2e-28
UNIPROTKB|I3LKF3480 LOC100625519 "Fascin" [Sus scr 0.542 0.320 0.396 1.3e-28
UNIPROTKB|F1RFN9493 FSCN1 "Fascin" [Sus scrofa (ta 0.542 0.312 0.396 1.6e-28
UNIPROTKB|J3KNT0472 FSCN1 "Fascin" [Homo sapiens ( 0.542 0.326 0.389 5.4e-28
UNIPROTKB|Q16658493 FSCN1 "Fascin" [Homo sapiens ( 0.542 0.312 0.389 7.9e-28
UNIPROTKB|F1PYU3493 FSCN1 "Fascin" [Canis lupus fa 0.542 0.312 0.389 1.3e-27
ZFIN|ZDB-GENE-110901-1488 fscn2a "fascin homolog 2, acti 0.524 0.305 0.398 3.3e-27
ZFIN|ZDB-GENE-040426-1740492 fscn2b "fascin homolog 2, acti 0.552 0.319 0.388 3.8e-27
ZFIN|ZDB-GENE-031009-1491 fscn1a "fascin homolog 1, acti 0.503 0.291 0.394 6.3e-27
FB|FBgn0003447 sn "singed" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/177 (59%), Positives = 139/177 (78%)

Query:   110 PSKFKIYSVPLSFLS--SGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLET 167
             P    I  + L ++S   GVDVTANQ+E+ ++ETFQLE+D S  RW +RT QDRYW L  
Sbjct:   275 PQASFIAGLNLRYVSVKQGVDVTANQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSA 334

Query:   168 GGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF 227
             GGGIQA+G+++ ++AL++L+W GDGS++ RANNGKF+ATKRSGHL+A S+S ++  ++YF
Sbjct:   335 GGGIQATGNRRCADALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYF 394

Query:   228 YLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR 284
             YLINRPILVLKCEQGFVG++T  N  L+LECNKA YETI VERA +G+V+ K  S +
Sbjct:   395 YLINRPILVLKCEQGFVGYRTPGN--LKLECNKATYETILVERAQKGLVHLKAHSGK 449
GO:0048477 "oogenesis" evidence=NAS;TAS
GO:0005737 "cytoplasm" evidence=IDA
GO:0051017 "actin filament bundle assembly" evidence=NAS;IMP
GO:0008407 "chaeta morphogenesis" evidence=IMP;NAS
GO:0003779 "actin binding" evidence=ISS
GO:0007015 "actin filament organization" evidence=TAS
GO:0048800 "antennal morphogenesis" evidence=IMP
GO:0051015 "actin filament binding" evidence=IEA
GO:0030674 "protein binding, bridging" evidence=IEA
GO:0030034 "microvillar actin bundle assembly" evidence=IMP
GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP
GO:0031941 "filamentous actin" evidence=IDA
GO:0035017 "cuticle pattern formation" evidence=IMP
GO:0009913 "epidermal cell differentiation" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0030036 "actin cytoskeleton organization" evidence=IMP
GO:0042060 "wound healing" evidence=IMP
GO:0035099 "hemocyte migration" evidence=IMP
GO:0015629 "actin cytoskeleton" evidence=IDA
GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP
GO:0046847 "filopodium assembly" evidence=IMP
GO:0016358 "dendrite development" evidence=IMP
GO:0043005 "neuron projection" evidence=IDA
GO:0043025 "neuronal cell body" evidence=IDA
UNIPROTKB|Q3MHK9 FSCN1 "Fascin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LKF3 LOC100625519 "Fascin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFN9 FSCN1 "Fascin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNT0 FSCN1 "Fascin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q16658 FSCN1 "Fascin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYU3 FSCN1 "Fascin" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110901-1 fscn2a "fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1740 fscn2b "fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031009-1 fscn1a "fascin homolog 1, actin-bundling protein a (Strongylocentrotus purpuratus)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24524SING_DROMENo assigned EC number0.59320.60910.3378yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd00257119 cd00257, Fascin, Fascin-like domain; members inclu 2e-25
pfam06268108 pfam06268, Fascin, Fascin domain 2e-16
cd00257119 cd00257, Fascin, Fascin-like domain; members inclu 1e-07
pfam06268108 pfam06268, Fascin, Fascin domain 1e-06
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information 
 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 2/108 (1%)

Query: 120 LSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKS 179
           LS  + G  V AN++ +   ETF LEFD  T ++ +R+   +Y + ++ GG+Q  G   +
Sbjct: 14  LSAEAGGDKVDANRDSLKGDETFTLEFDN-TGKYALRSHDGKYLSADSDGGVQLEGHPNA 72

Query: 180 SNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF 227
               + L + GDG  ALRA NG+++    SG L A+S++      +  
Sbjct: 73  D-CRFTLEFHGDGKWALRAENGRYLGGDGSGTLKASSETVGPDELFEL 119

Length = 119
>gnl|CDD|203418 pfam06268, Fascin, Fascin domain Back     alignment and domain information
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>gnl|CDD|203418 pfam06268, Fascin, Fascin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
cd00257119 Fascin Fascin-like domain; members include actin-b 99.94
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 99.9
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 99.87
cd00257119 Fascin Fascin-like domain; members include actin-b 99.81
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 99.44
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 99.29
KOG3962|consensus246 98.69
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 98.58
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 98.44
KOG3962|consensus246 98.39
PF07468153 Agglutinin: Agglutinin; InterPro: IPR008998 Agglut 98.24
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 98.23
cd00058123 FGF Acidic and basic fibroblast growth factor fami 98.07
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 98.06
smart00442126 FGF Acidic and basic fibroblast growth factor fami 98.0
cd00058123 FGF Acidic and basic fibroblast growth factor fami 97.84
smart00442126 FGF Acidic and basic fibroblast growth factor fami 97.74
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 97.55
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 97.4
KOG3885|consensus155 97.3
PF07468153 Agglutinin: Agglutinin; InterPro: IPR008998 Agglut 96.87
KOG3885|consensus155 96.8
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 95.68
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 94.75
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 92.69
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 91.37
KOG0276|consensus 794 85.37
PF03498150 CDtoxinA: Cytolethal distending toxin A/C family; 81.06
KOG1446|consensus311 80.86
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information 
Probab=99.94  E-value=5.1e-26  Score=182.78  Aligned_cols=118  Identities=27%  Similarity=0.498  Sum_probs=111.6

Q ss_pred             CCeEEEEECCCCeEEeecCc-eEEeecCCCCCCceEEEEEeCCCCeEEEEEcCceeEEEeCCCcEEecCCCCCCCceEEE
Q psy16240        108 DKPSKFKIYSVPLSFLSSGV-DVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDL  186 (284)
Q Consensus       108 ~~~V~Lra~nGkyvs~~~~g-~l~A~~~~~~~~e~F~l~~d~~~g~~~Lrs~nGkY~~v~~~G~v~a~~~~~~~~~~F~l  186 (284)
                      ++||+||+.|||||++.+++ .|.|+++.++++|+|+++. +++|+++||+.+||||+++.+|.|.++++ ++++|.|.+
T Consensus         1 ~p~v~Lrs~~gkyl~~~~~g~~v~a~~~~~~~~e~F~l~~-~~~g~v~Lrs~~G~yls~~~~g~l~~~~~-~~~~e~F~~   78 (119)
T cd00257           1 RPQVVLRSVNGRYLSAEAGGDKVDANRDSLKGDETFTLEF-DNTGKYALRSHDGKYLSADSDGGVQLEGH-PNADCRFTL   78 (119)
T ss_pred             CcEEEEEEcCCCEEEEeccCCEEEEcCccCCCceEEEEEE-CCCCeEEEEECCCcEEEEECCCCEEecCC-CCCCcEEEE
Confidence            48999999999999999998 8999999999999999995 67899999999999999999999999988 899999999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEccCceEEEcccCCCCCceEEE
Q psy16240        187 VWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF  227 (284)
Q Consensus       187 e~~~~g~v~lra~nGkyl~~~~~G~L~A~~~~~~~~e~F~~  227 (284)
                      |++++|+++||++|||||+++++|.|.++++.++++|.|++
T Consensus        79 e~~~~g~~al~~~~G~yl~~~~~g~l~~~~~~~~~~e~f~~  119 (119)
T cd00257          79 EFHGDGKWALRAENGRYLGGDGSGTLKASSETVGPDELFEL  119 (119)
T ss_pred             EECCCCeEEEEcCCCCEEeecCCCeEEEecCCCCccceecC
Confidence            99888999999999999999999999999999999999975

>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>KOG3962|consensus Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>KOG3962|consensus Back     alignment and domain information
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>KOG3885|consensus Back     alignment and domain information
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types Back     alignment and domain information
>KOG3885|consensus Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>KOG0276|consensus Back     alignment and domain information
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp Back     alignment and domain information
>KOG1446|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
4gov_A493 The Crystal Structure Of Human Fascin 1 S39d Mutant 6e-29
1dfc_A493 Crystal Structure Of Human Fascin, An Actin-Crossli 6e-29
4gp0_A493 The Crystal Structure Of Human Fascin 1 R149a K150a 6e-29
3p53_A496 Structure Of Fascin Length = 496 6e-29
4goy_A493 The Crystal Structure Of Human Fascin 1 K41a Mutant 6e-29
4gp3_A493 The Crystal Structure Of Human Fascin 1 K358a Mutan 3e-28
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant Length = 493 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
           G+D++ANQ+E +D ETFQLE D  TK+   RT   +YWTL   GG+Q++   K+++  +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
           + W+ D  + LRA+NGKF+ +K++G L A+ ++A DS  +   LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FKTGANNSLRLECNKANYETIQVERAD 272
            +        L+ N+++Y+  Q+E  D
Sbjct: 397 CRKVTGT---LDANRSSYDVFQLEFND 420
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking Protein Length = 493 Back     alignment and structure
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a Mutant Length = 493 Back     alignment and structure
>pdb|3P53|A Chain A, Structure Of Fascin Length = 496 Back     alignment and structure
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant Length = 493 Back     alignment and structure
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant Length = 493 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 4e-46
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 9e-19
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 3e-09
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 2e-04
3q7x_A132 De novo designed beta-trefoil architecture with S 3e-16
3q7x_A132 De novo designed beta-trefoil architecture with S 3e-05
3q7x_A132 De novo designed beta-trefoil architecture with S 4e-04
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 8e-11
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 1e-07
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 3e-08
3p6j_A142 De novo designed beta-trefoil architecture with S 6e-08
3p6i_A142 De novo designed beta-trefoil architecture with S 7e-05
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
 Score =  160 bits (406), Expect = 4e-46
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 25/247 (10%)

Query: 36  EEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLE 95
                   + LEF         R  + RY       G +    +        +  L  LE
Sbjct: 204 ARPEPATGYTLEFRSGK--VAFRDCEGRYLAPSGPSGTL----KAGKATKVGKDELFALE 257

Query: 96  VKIQYFYGLYCTDKPSKFKIYSVPLSFLS--SGVDVTANQEEISDHETFQLEFDPSTKRW 153
                          ++  + +     +S   G+D++ANQ+E +D ETFQLE D  TK+ 
Sbjct: 258 ------------QSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKC 305

Query: 154 YIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLY 213
             RT   +YWTL   GG+Q++   K+++  +D+ W+ D  + LRA+NGKF+ +K++G L 
Sbjct: 306 AFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWR-DRRITLRASNGKFVTSKKNGQLA 364

Query: 214 ANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADR 273
           A+ ++A DS  +   LINRPI+V + E GF+G +        L+ N+++Y+  Q+E  D 
Sbjct: 365 ASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTG---TLDANRSSYDVFQLEFND- 420

Query: 274 GVVYFKG 280
           G    K 
Sbjct: 421 GAYNIKD 427
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Length = 132 Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Length = 132 Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Length = 132 Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Length = 143 Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Length = 142 Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Length = 142 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 100.0
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 100.0
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 99.86
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 99.68
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 99.38
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 99.33
3q7x_A132 De novo designed beta-trefoil architecture with S 98.78
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 98.67
3p6j_A142 De novo designed beta-trefoil architecture with S 98.58
3p6i_A142 De novo designed beta-trefoil architecture with S 98.38
3p6i_A142 De novo designed beta-trefoil architecture with S 98.37
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 98.31
3p6j_A142 De novo designed beta-trefoil architecture with S 98.28
3q7x_A132 De novo designed beta-trefoil architecture with S 98.2
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 98.2
3aj6_A286 Main hemagglutinin component; toxin, beta-trefoil; 98.13
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 98.07
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 97.89
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 97.87
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 97.81
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 97.75
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 97.74
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 97.72
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 97.71
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 97.7
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 97.68
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 97.66
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 97.66
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 97.62
2vse_A 841 MTX holotoxin, mosquitocidal toxin; ADP-ribosyltra 97.58
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 97.58
1ihk_A174 GLIA-activating factor; B-trefoil fold, hormone/gr 97.57
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 97.53
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 97.52
3f1r_A211 FGF-20, fibroblast growth factor 20; beta-trefoil 97.45
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 97.42
1ihk_A174 GLIA-activating factor; B-trefoil fold, hormone/gr 97.39
3f1r_A211 FGF-20, fibroblast growth factor 20; beta-trefoil 97.37
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 97.28
3hbw_A193 Fibroblast growth factor 13; beta-trefoil fold, al 97.26
3hbw_A193 Fibroblast growth factor 13; beta-trefoil fold, al 97.19
2p23_A194 FGF-19, fibroblast growth factor 19; atypical beta 97.15
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 97.11
3aj6_A286 Main hemagglutinin component; toxin, beta-trefoil; 97.07
2p23_A194 FGF-19, fibroblast growth factor 19; atypical beta 96.85
2vse_A 841 MTX holotoxin, mosquitocidal toxin; ADP-ribosyltra 96.76
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 96.74
1ybi_A288 HA33A, HA33/A, non-toxin haemagglutinin HA34; beta 95.73
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 95.21
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 94.63
3ef2_A293 Agglutinin, lectin; beta-trefoil, calcium-binding, 94.37
1ybi_A288 HA33A, HA33/A, non-toxin haemagglutinin HA34; beta 93.72
3ef2_A293 Agglutinin, lectin; beta-trefoil, calcium-binding, 92.67
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 92.64
3phz_A286 Ricin B-related lectin; beta trefoil, saccharide b 90.26
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 90.25
1wd3_A482 Alpha-L-arabinofuranosidase B; beta-sandwich, beta 90.01
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 87.29
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 85.62
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 82.35
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 81.35
3phz_A286 Ricin B-related lectin; beta trefoil, saccharide b 81.02
1sr4_A206 CDT A, cytolethal distending toxin subunit A; bact 80.98
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 80.67
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-52  Score=405.78  Aligned_cols=261  Identities=29%  Similarity=0.520  Sum_probs=226.1

Q ss_pred             eeeecceeee---e-ccEEEEcccCCCC-ceeEEEEEeCCCCeEEEEECCCce----------------EEEecCCceee
Q psy16240         17 VSLFPLSFLS---S-GVDVTANQEEISD-HETFQLEFDPSTKRWYIRTMQDRY----------------WTLETGGGMIE   75 (284)
Q Consensus        17 ~~~~~~~~~~---~-g~~v~An~~e~~~-~etFqLe~d~~~~r~~LRt~~gky----------------~tl~~~gg~~a   75 (284)
                      .++..-.|++   . +.+|.++++-+=. ..+|+|+|  .+++|+|+|++++|                |+++..+|.+|
T Consensus       145 ~s~~r~~y~~l~~~~~~~~~~d~~~pwg~d~~~~l~f--~~g~y~l~t~~~~fL~~dg~L~~~p~~~~~ftl~~~~g~vA  222 (493)
T 3llp_A          145 YSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAF--QDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVA  222 (493)
T ss_dssp             EETTTTEEEEEEC--CCEEEEEESSCCSGGGCEEEEE--CSSSEEEECTTSCEECTTSCEESSCCGGGCBEEEEC--CEE
T ss_pred             eecccceeEEcCCCCCCeEEECCCCCCCCCeeEEEEE--CCCcEEEEECCCceECCCCccccCCCcccEEEEEEeCCEEE
Confidence            5666667776   3 5678877776633 45588888  46788888888888                46666556555


Q ss_pred             ---ecccccc--CCcceeeeeeecccCcCeeEEEEEcCCeEEEEECCCCeEEeecCceEEeecCCCCCCceEEEEEeCCC
Q psy16240         76 ---EESRLFS--NPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPST  150 (284)
Q Consensus        76 ---~~g~~~s--~~~~~~~~~~~~~~~~~E~F~l~~~~~~V~Lra~nGkyvs~~~~g~l~A~~~~~~~~e~F~l~~d~~~  150 (284)
                         +.|+||+  +|.+++++.++++++++|+|.|++++++|+|++.|||||++++++.|.|+++.++++|+|+|++++++
T Consensus       223 lks~~GkYL~~~g~~g~L~~~~~~~~g~~E~F~L~~~~~qVaL~s~ngkyVsa~~gg~l~An~~~~~~~EtFql~~~~~~  302 (493)
T 3llp_A          223 FRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDT  302 (493)
T ss_dssp             EECTTSCBEEEETTTTEEEECC---CCGGGCEEEEECCCEEEEECTTSCEEECC-CCCCEEEESCCSGGGCEEEEECTTT
T ss_pred             EEeCCCCEEeEECCCCeEEeccCCCCCCceEEEEEeCCCEEEEEecCCcEEEecCCceEEeeCCCCCCcEEEEEEEeCCC
Confidence               6677776  56677777788999999999999999999999999999999999999999999999999999998667


Q ss_pred             CeEEEEEcCceeEEEeCCCcEEecCCCCCCCceEEEEEeCCCeEEEEeCCCCeEEEccCceEEEcccCCCCCceEEEEEe
Q psy16240        151 KRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLI  230 (284)
Q Consensus       151 g~~~Lrs~nGkY~~v~~~G~v~a~~~~~~~~~~F~le~~~~g~v~lra~nGkyl~~~~~G~L~A~~~~~~~~e~F~~~lv  230 (284)
                      ++++||+.+||||+++++|.|++++++++++|.|+++|.+ ++++|||+|||||+++++|.|+|+++.++++|.|.|+++
T Consensus       303 ~~vaLRs~~GkYl~~~~~g~v~a~~~~~g~~E~F~i~~~~-g~vaLkA~NGkyVsa~~~G~L~An~~~~g~~E~F~l~l~  381 (493)
T 3llp_A          303 KKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRD-RRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLI  381 (493)
T ss_dssp             CCEEEECTTSCEEEECTTSBEEEEESSCCGGGCBEEEEET-TEEEEECTTSCEEEECTTSBEEEEESSCCGGGCBEEEEC
T ss_pred             CEEEEEeCCCCEEEEeCCCcEEeccCCCCCcceEEEEeCC-CeEEEEeCCCCEEEEcCCCEEEEecCCCCCCeEEEEEEC
Confidence            8999999999999999999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             cCCeEEEeecCCeeeeecCCCCCCceeecceeceeEEEEEcCCceEEEecCCCC
Q psy16240        231 NRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR  284 (284)
Q Consensus       231 nrp~lvL~g~~gfV~~~~~~~~~~~l~~nr~~~~~~~l~~~~~G~y~~~~~~gk  284 (284)
                      |||+|+|||+||||+++++   +..|+|||++||+|+|+ ..+|.|+||+++||
T Consensus       382 nrp~l~Lrg~~G~vg~~~~---~~~l~~nr~~~e~F~le-~~~G~~~frt~nGK  431 (493)
T 3llp_A          382 NRPIIVFRGEHGFIGCRKV---TGTLDANRSSYDVFQLE-FNDGAYNIKDSTGK  431 (493)
T ss_dssp             SCSEECCEETTEEEEEC-----CCBEEEEESSCCCEEEE-EETTEEEEECTTSC
T ss_pred             CCceEEEecccCcEEeccC---cchhhcccccceeEEEE-ECCCeEEEEeCCCC
Confidence            9999999999999999998   89999999999999997 88899999999997
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin, ricin-B-like domain; 2.5A {Lysinibacillus sphaericus} PDB: 2vsa_A Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A* Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens} Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A* Back     alignment and structure
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens} Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C Back     alignment and structure
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C Back     alignment and structure
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A Back     alignment and structure
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin, ricin-B-like domain; 2.5A {Lysinibacillus sphaericus} PDB: 2vsa_A Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A {Clostridium botulinum} Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A {Clostridium botulinum} Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A* Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 8e-29
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 2e-10
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 0.002
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 5e-20
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 2e-05
d1dfca4111 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens 1e-19
d1dfca4111 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens 7e-11
d1dfca4111 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens 1e-05
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 3e-11
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 1e-08
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 8e-29
 Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
           G+D++ANQ+E +D ETFQLE D  TK+   RT   +YWTL   GG+Q++   K+++  +D
Sbjct: 19  GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 78

Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLIN 231
           + W+ D  + LRA+NGKF+ +K++G L A+ ++A DS  +   LIN
Sbjct: 79  IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLIN 123
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.98
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 99.88
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 99.86
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.28
d1jlxa2146 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 98.44
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 98.07
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 98.03
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 98.02
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 97.99
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 97.93
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 97.86
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 97.81
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 97.8
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 97.78
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 97.78
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 97.73
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 97.7
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 97.69
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 97.67
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 97.65
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 97.61
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 97.56
d1jlxa2146 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 97.39
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 97.29
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 97.28
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 97.04
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 96.55
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 96.54
d1sr4a_167 Cytolethal distending toxin subunit A {Haemophilus 94.89
d1qxma1145 Hemagglutinin component Ha1 {Clostridium botulinum 94.61
d1qxma2138 Hemagglutinin component Ha1 {Clostridium botulinum 94.11
d1qxma1145 Hemagglutinin component Ha1 {Clostridium botulinum 90.93
d1sr4a_167 Cytolethal distending toxin subunit A {Haemophilus 84.24
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.7e-32  Score=219.62  Aligned_cols=123  Identities=37%  Similarity=0.627  Sum_probs=116.0

Q ss_pred             CCeEEEEECCCCeEEeecCceEEeecCCCCCCceEEEEEeCCCCeEEEEEcCceeEEEeCCCcEEecCCCCCCCceEEEE
Q psy16240        108 DKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLV  187 (284)
Q Consensus       108 ~~~V~Lra~nGkyvs~~~~g~l~A~~~~~~~~e~F~l~~d~~~g~~~Lrs~nGkY~~v~~~G~v~a~~~~~~~~~~F~le  187 (284)
                      +|||.|++.|||||++++++.|.|+++..+++|+|+|+++.++++|+||+.+||||+++++|.|++++++++++++|+|+
T Consensus         1 ~pqv~l~~~ngkyvsa~~G~~v~An~~~~~~~e~F~le~~~~~~~~~Lr~~~gkyl~~~~~g~v~a~~~~~~~~e~F~~~   80 (123)
T d1dfca3           1 CAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIE   80 (123)
T ss_dssp             CCEEEEECTTSCEEEC---CBCEEEECCCSGGGCEEEEECTTTCCEEEEETTTEEEEECTTSBEEEEESSCCGGGCBEEE
T ss_pred             CCeEEEEecCCCEEEEcCCCEEEecccccCCcceEEEEECCCCCEEEEEeCCCCEEEEcCCCcEEEccccCCCceEEEEE
Confidence            57999999999999999999999999999999999999887788999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCeEEEccCceEEEcccCCCCCceEEEEEec
Q psy16240        188 WQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLIN  231 (284)
Q Consensus       188 ~~~~g~v~lra~nGkyl~~~~~G~L~A~~~~~~~~e~F~~~lvn  231 (284)
                      +++ ++++||+.|||||+++++|.|.|+++.++++|+|.|+|+|
T Consensus        81 ~~~-g~~alra~nG~yl~a~~~G~l~a~~~~~g~~e~f~i~l~N  123 (123)
T d1dfca3          81 WRD-RRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLIN  123 (123)
T ss_dssp             EET-TEEEEECTTSSBCEECSSSBEESCCSSCCSSSEEEEEECS
T ss_pred             EeC-CeEEEEeCCCCEEEeCCCCEEEEccCCCCCceEEEEEEcC
Confidence            997 9999999999999999999999999999999999999987
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Back     information, alignment and structure
>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Back     information, alignment and structure
>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Back     information, alignment and structure
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure