Psyllid ID: psy1624

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSYHY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccEEEEEEccccccccccccccccEEEEEEEEEccccccccccccccEEEEccccEEEEcccccEEEEcccHHHHHHHHHccccEEEEEEEEEccccEEEEcccccccccccccccccccEEccccccccccccccEEEEEEccccccccEEEEEEccccHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHccccccccEEEEEccccEEEEccccccccccccccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEcccccccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccEEEEEcccccEEEcccEEEEEccccHHHHHHHHHcccccEEEEEEEEccccEEEEccccccccccHcccccccHHHHcccccccccccccEEEEEEccccccccccEEEEccccHHHHHHHHHccccccccccEcccccccccccccccccccccccccHHEEcccccccccEEEEEccccHHHHHHHHHcccccEEEEEEEEccccEEEEEcccccccccEEEcccccHHHHHccccEcccccccc
Coil and Loop (DISEMBL)
vrdtappfrvLEKCQELCLRDRTATINLVRtctsfdfqpgsriasfsgaveyeestcyltretahpegignlvlvpnsvhynevclsstrierecpnrhyVFERHArkklklpaadvkeimasnrtdcedkCLNEFTFvcrsasydsvaktcslsrftrrshpemleddpnadylentclnserrcdgpvifvkeenkrlggpfevDIYANLSLLECQAQClgaekfkgtdlyltkgndfpensvtshlfadgrrpdtafqryrnsklggefhseitGRSLSECLDECLRQASFQCRSAVYSERFRICRlsrfnqrdghrivydpdydyyENLMskitfpffsyhy
Flexible Loop (DISEMBL)
vrdtappfrvleKCQELCLRDRTATINLVRtctsfdfqpgsrIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLsstrierecpNRHYVFerharkklklpaadVKEImasnrtdcedKCLNEFTFVcrsasydsvaktcslsrftrrshpemleddpnaDYLENTCLNSERRCDGPVIFVKeenkrlggPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTshlfadgrrpdTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERfricrlsrfnqrdghrivYDPDYDYYENLMSKITFPFFSYHY
Low Complexity Region (SEG)
VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSYHY
Disordered region (IsUnstruct)
*******FRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSR*****************YLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFA********FQRY****LGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSY**
Disordered Region (DISOPRED)
******P*RVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYL******************SVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRL***********VYDPDYDYYENLMSKITFPFFSYHY
Disordered Region (DISEMBL)
VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSYHY
Disordered Region (DISPRO)
***TAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENLMSKITFPFFSYHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q10125	618	Uncharacterized protein F	no	N/A	0.430	0.241	0.272	0.0008

>sp|Q10125|YSM5_CAEEL Uncharacterized protein F52C9.5 OS=Caenorhabditis elegans GN=F52C9.5 PE=4 SV=3

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 11  LEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIG 70
           + +C + C+ ++   + L   C SFDF   +             STC  T E A P G G
Sbjct: 283 VAECAKACIENKINGVAL--KCKSFDFLSST-------------STCAFTSEAAVPVGNG 327

Query: 71  NLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCED 130
            L    ++ ++ ++C+S + +E  CP+    F RH +  L   A  V +  + +   C D
Sbjct: 328 QLKQREDASYHEKICVSKSFVE-SCPS--TFFSRHPQMILVGFAESVSD--SPSFEHCFD 382

Query: 131 KCLNE---FTFVCRSASY--DSVAKTCSLSRFTRRSHPEML--EDDPNADYLENTC 179
            CLN    F F C S  Y  +     C L+   R +  E+   E+    DY E  C
Sbjct: 383 TCLNSYQLFGFNCTSGMYYFEENQLNCILNSENRNTQRELFTEENTDIVDYFEVEC 438

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
328701718	1187	PREDICTED: hypothetical protein LOC10016	0.968	0.282	0.765	1e-167
328701716	1181	PREDICTED: hypothetical protein LOC10016	0.968	0.283	0.778	1e-167
307213317	1382	hypothetical protein EAI_13009 [Harpegna	0.971	0.243	0.715	1e-155
170027712	1260	no-mechanoreceptor potential a [Culex qu	0.976	0.268	0.702	1e-154
157119373	1472	no-mechanoreceptor potential a [Aedes ae	0.976	0.229	0.705	1e-154
350409762	1374	PREDICTED: hypothetical protein LOC10074	0.965	0.243	0.715	1e-154
340718234	1359	PREDICTED: hypothetical protein LOC10064	0.965	0.245	0.715	1e-154
158286287	1504	AGAP007100-PA [Anopheles gambiae str. PE	0.976	0.224	0.692	1e-153
383858806	1345	PREDICTED: uncharacterized protein LOC10	0.965	0.248	0.713	1e-152
195029345	1545	GH19913 [Drosophila grimshawi] gi|193903	0.976	0.218	0.689	1e-152

>gi|328701718|ref|XP_003241691.1| PREDICTED: hypothetical protein LOC100160832 isoform 2 [Acyrthosiphon pisum]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/380 (76%), Positives = 314/380 (82%), Gaps = 45/380 (11%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRDTAPPFRVLEKCQELCLRDRTAT NLVRTCTSFDFQPGSRIASFSG VEYEESTCYLT
Sbjct: 55  VRDTAPPFRVLEKCQELCLRDRTATNNLVRTCTSFDFQPGSRIASFSGTVEYEESTCYLT 114

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE AHPEGIG LVLVPNSVHY EVCLSS+RIERECPNRHYVFERH RKKLKLP ++ KE+
Sbjct: 115 REQAHPEGIGVLVLVPNSVHYTEVCLSSSRIERECPNRHYVFERHTRKKLKLPPSEYKEM 174

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
           +A+NRTDCEDKCLNEFTFVCRSA+YDS +KTC LSRFTRRSHPE+LE+DP++DYLENTCL
Sbjct: 175 IAANRTDCEDKCLNEFTFVCRSATYDSASKTCWLSRFTRRSHPELLEEDPSSDYLENTCL 234

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N ERRCDGPVIFVKEENKRLGGPFEVDI+ANLSL+ECQAQCL AEK+             
Sbjct: 235 NVERRCDGPVIFVKEENKRLGGPFEVDIFANLSLIECQAQCLRAEKYFCRSVEYDEQIRR 294

Query: 228 --------------------------------KGTDLYLTKGNDFPENSVTSHLFADGRR 255
                                              DL   KGN+F +N++TSHLFADGRR
Sbjct: 295 CIIFEEDSMSQKDDLRVSSSPTHDLYDLVCLDNRGDLLTAKGNEFSDNTLTSHLFADGRR 354

Query: 256 PDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQ 315
           PDTAFQRYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYSERFRICRLSRFNQ
Sbjct: 355 PDTAFQRYRNSRLGGEFHSEITGRSLSECLDECLRQVSFQCRSAVYSERFRICRLSRFNQ 414

Query: 316 RDGHRIVYDPDYDYYENLMS 335
           RDGHR++YD DYDYYENLM+
Sbjct: 415 RDGHRVIYDADYDYYENLMN 434

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701716|ref|XP_001949682.2| PREDICTED: hypothetical protein LOC100160832 isoform 1 [Acyrthosiphon pisum]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/374 (77%), Positives = 317/374 (84%), Gaps = 39/374 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRDTAPPFRVLEKCQELCLRDRTAT NLVRTCTSFDFQPGSRIASFSG VEYEESTCYLT
Sbjct: 55  VRDTAPPFRVLEKCQELCLRDRTATNNLVRTCTSFDFQPGSRIASFSGTVEYEESTCYLT 114

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE AHPEGIG LVLVPNSVHY EVCLSS+RIERECPNRHYVFERH RKKLKLP ++ KE+
Sbjct: 115 REQAHPEGIGVLVLVPNSVHYTEVCLSSSRIERECPNRHYVFERHTRKKLKLPPSEYKEM 174

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
           +A+NRTDCEDKCLNEFTFVCRSA+YDS +KTC LSRFTRRSHPE+LE+DP++DYLENTCL
Sbjct: 175 IAANRTDCEDKCLNEFTFVCRSATYDSASKTCWLSRFTRRSHPELLEEDPSSDYLENTCL 234

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N ERRCDGPVIFVKEENKRLGGPFEVDI+ANLSL+ECQAQCL AEK+             
Sbjct: 235 NVERRCDGPVIFVKEENKRLGGPFEVDIFANLSLIECQAQCLRAEKYFCRSVEYDEQIRR 294

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  DL ++                KGN+F +N++TSHLFADGRRPDTAFQ
Sbjct: 295 CIIFEEDSMSQKDDLRVSSSPTHDLYDLVCLDNPKGNEFSDNTLTSHLFADGRRPDTAFQ 354

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYSERFRICRLSRFNQRDGHR+
Sbjct: 355 RYRNSRLGGEFHSEITGRSLSECLDECLRQVSFQCRSAVYSERFRICRLSRFNQRDGHRV 414

Query: 322 VYDPDYDYYENLMS 335
           +YD DYDYYENLM+
Sbjct: 415 IYDADYDYYENLMN 428

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213317|gb|EFN88769.1| hypothetical protein EAI_13009 [Harpegnathos saltator]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/379 (71%), Positives = 304/379 (80%), Gaps = 43/379 (11%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQELCLRDRTAT NLVR CTSFDFQPGSRIASFSGA EYEESTCYLT
Sbjct: 55  VRDSAPPFRVLEKCQELCLRDRTATNNLVRACTSFDFQPGSRIASFSGAAEYEESTCYLT 114

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCL+S RIERECPNR YVFERH RKKLKLP  D+KE+
Sbjct: 115 REQAQPEGIGNLMLVPNSVHFTEVCLASDRIERECPNRRYVFERHPRKKLKLPLTDIKEV 174

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NRTDCED+CLNEF+FVCRSA+YD+  ++CSLSRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 175 SAANRTDCEDRCLNEFSFVCRSATYDTALRSCSLSRFTRRTHPELLEDDPNSDYLENTCL 234

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG  +FVKEENKRL GPFEVDIY NL+L ECQA CL AEK+             
Sbjct: 235 NAERRCDGLAVFVKEENKRLRGPFEVDIYTNLTLDECQALCLRAEKYFCRSVEFDEQTRQ 294

Query: 228 ----------KGTDL--------------------YLTKGNDFPENSVTSHLFADGRRPD 257
                     +  D+                     L +G+++P++S TSHLF+DGRRPD
Sbjct: 295 CVISEEDSVSQKDDIGISSSPSHHFYDLVCLDNHPSLARGSEYPDSSSTSHLFSDGRRPD 354

Query: 258 TAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD 317
           TAFQRYRNS+L GEFHSEITGRSLSECLDECLRQ SFQCRSAVYSE + ICRLSRFNQRD
Sbjct: 355 TAFQRYRNSRLSGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSEHYHICRLSRFNQRD 414

Query: 318 GHRIVYDPDYDYYENLMSK 336
           GHRI+YD DYDYYENLM +
Sbjct: 415 GHRIIYDADYDYYENLMHQ 433

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170027712|ref|XP_001841741.1| no-mechanoreceptor potential a [Culex quinquefasciatus] gi|167862311|gb|EDS25694.1| no-mechanoreceptor potential a [Culex quinquefasciatus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/377 (70%), Positives = 308/377 (81%), Gaps = 39/377 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQ+LCLRDRTA+ NL R CTSFDFQPGSRIASFSG+ EYEESTCYLT
Sbjct: 57  VRDSAPPFRVLEKCQDLCLRDRTASTNLGRACTSFDFQPGSRIASFSGSAEYEESTCYLT 116

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCLSS+R +RECP+R YVFERH RKKLKLP +D+KE+
Sbjct: 117 REQAAPEGIGNLMLVPNSVHFTEVCLSSSRPDRECPSRRYVFERHPRKKLKLPVSDIKEV 176

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NR+DCEDKCLNEF+FVCRSA+YDS  ++CS+SRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 177 TAANRSDCEDKCLNEFSFVCRSANYDSTLRSCSMSRFTRRTHPELLEDDPNSDYLENTCL 236

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG V++VKEENKRLGGPFEV+I+ N++L ECQ+ CL AEK+             
Sbjct: 237 NAERRCDGLVVYVKEENKRLGGPFEVEIFNNMTLEECQSLCLRAEKYFCRSIEFDDQTKQ 296

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  DL ++                +G+D+P+NSVTSHLFA GRRPDTAFQ
Sbjct: 297 CILSEEDSVSQKDDLSISSSPTHHFYDLVCLDNQRGSDYPDNSVTSHLFASGRRPDTAFQ 356

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYS+RFR CRLSR+NQRDG RI
Sbjct: 357 RYRNSRLGGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSDRFRTCRLSRYNQRDGMRI 416

Query: 322 VYDPDYDYYENLMSKIT 338
           +YD DYDYYENLM  + 
Sbjct: 417 IYDADYDYYENLMPHLV 433

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119373|ref|XP_001659384.1| no-mechanoreceptor potential a [Aedes aegypti] gi|108875345|gb|EAT39570.1| AAEL008647-PA [Aedes aegypti]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/377 (70%), Positives = 307/377 (81%), Gaps = 39/377 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQ+LCLRDRTA+ NL R CTSFDFQPGSRIASFSG+ EYEESTCYLT
Sbjct: 57  VRDSAPPFRVLEKCQDLCLRDRTASNNLGRACTSFDFQPGSRIASFSGSAEYEESTCYLT 116

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCLSS+R +RECP+R YVFERH RKKLKLP +D+KE+
Sbjct: 117 REQAAPEGIGNLMLVPNSVHFTEVCLSSSRPDRECPSRRYVFERHPRKKLKLPVSDIKEV 176

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NR+DCEDKCLNEF+FVCRSA+YDS  ++CS+SRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 177 TAANRSDCEDKCLNEFSFVCRSANYDSTLRSCSMSRFTRRTHPELLEDDPNSDYLENTCL 236

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG V++VKEENKRLGGPFEV+I+ N++L ECQ+ CL AEK+             
Sbjct: 237 NAERRCDGLVVYVKEENKRLGGPFEVEIFNNMTLEECQSLCLRAEKYFCRSIEFDDQTKQ 296

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  DL ++                +G D+PENSVTSHLFA GRRPDTAFQ
Sbjct: 297 CILSEEDSVSQKDDLSISSSPTHHFYDLVCLDNQRGTDYPENSVTSHLFASGRRPDTAFQ 356

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYS+RFR CRLSR+NQRDG RI
Sbjct: 357 RYRNSRLGGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSDRFRTCRLSRYNQRDGMRI 416

Query: 322 VYDPDYDYYENLMSKIT 338
           +YD DYDYYENLM  + 
Sbjct: 417 IYDADYDYYENLMPHLV 433

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409762|ref|XP_003488836.1| PREDICTED: hypothetical protein LOC100740460 [Bombus impatiens]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/373 (71%), Positives = 302/373 (80%), Gaps = 39/373 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQELCLRDRTAT NLVR CTSFDFQPGSRIASFSGA EYEESTCYLT
Sbjct: 54  VRDSAPPFRVLEKCQELCLRDRTATNNLVRACTSFDFQPGSRIASFSGAAEYEESTCYLT 113

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCL S RIERECPNR YVFERH RKKLKLP  D+KE+
Sbjct: 114 REQAQPEGIGNLMLVPNSVHFTEVCLGSDRIERECPNRRYVFERHPRKKLKLPLTDIKEV 173

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NRTDCED+CLNEF+F+CRSA+YD+  ++C+LSRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 174 SAANRTDCEDRCLNEFSFICRSATYDTALRSCALSRFTRRTHPELLEDDPNSDYLENTCL 233

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG  +FVKEENKRL GPFEVDIY NL+L ECQA CL AEK+             
Sbjct: 234 NAERRCDGLAVFVKEENKRLRGPFEVDIYTNLTLDECQALCLRAEKYFCRSVEFDEQTRQ 293

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  D+ ++                +G+++P++S TSHLF+DGRRPDTAFQ
Sbjct: 294 CIISEEDSVSQKDDIGISSSPSHHFYDLVCLDNPRGSEYPDSSSTSHLFSDGRRPDTAFQ 353

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+L GEFHSEITGRSLSECLDECLRQ SFQCRSAVYSE +  CRLSRFNQRDGHRI
Sbjct: 354 RYRNSRLSGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSEHYHTCRLSRFNQRDGHRI 413

Query: 322 VYDPDYDYYENLM 334
           +YD DYDYYENLM
Sbjct: 414 IYDADYDYYENLM 426

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718234|ref|XP_003397576.1| PREDICTED: hypothetical protein LOC100649456 [Bombus terrestris]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/373 (71%), Positives = 302/373 (80%), Gaps = 39/373 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQELCLRDRTAT NLVR CTSFDFQPGSRIASFSGA EYEESTCYLT
Sbjct: 54  VRDSAPPFRVLEKCQELCLRDRTATNNLVRACTSFDFQPGSRIASFSGAAEYEESTCYLT 113

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCL S RIERECPNR YVFERH RKKLKLP  D+KE+
Sbjct: 114 REQAQPEGIGNLMLVPNSVHFTEVCLGSDRIERECPNRRYVFERHPRKKLKLPLTDIKEV 173

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NRTDCED+CLNEF+F+CRSA+YD+  ++C+LSRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 174 SAANRTDCEDRCLNEFSFICRSATYDTALRSCALSRFTRRTHPELLEDDPNSDYLENTCL 233

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG  +FVKEENKRL GPFEVDIY NL+L ECQA CL AEK+             
Sbjct: 234 NAERRCDGLAVFVKEENKRLRGPFEVDIYTNLTLDECQALCLRAEKYFCRSVEFDEQTRQ 293

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  D+ ++                +G+++P++S TSHLF+DGRRPDTAFQ
Sbjct: 294 CIISEEDSVSQKDDIGISSSPSHHFYDLVCLDNPRGSEYPDSSSTSHLFSDGRRPDTAFQ 353

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+L GEFHSEITGRSLSECLDECLRQ SFQCRSAVYSE +  CRLSRFNQRDGHRI
Sbjct: 354 RYRNSRLSGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSEHYHTCRLSRFNQRDGHRI 413

Query: 322 VYDPDYDYYENLM 334
           +YD DYDYYENLM
Sbjct: 414 IYDADYDYYENLM 426

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286287|ref|XP_308658.4| AGAP007100-PA [Anopheles gambiae str. PEST] gi|157020396|gb|EAA04001.5| AGAP007100-PA [Anopheles gambiae str. PEST]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/377 (69%), Positives = 308/377 (81%), Gaps = 39/377 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQ+LCLRDRTA+ NL R CTSFDFQPGSRIASFSG+VEYEESTCYLT
Sbjct: 57  VRDSAPPFRVLEKCQDLCLRDRTASNNLGRACTSFDFQPGSRIASFSGSVEYEESTCYLT 116

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVC++S+R +RECP+R YVFERH RKKLKLP +D+KE+
Sbjct: 117 REQAAPEGIGNLMLVPNSVHFTEVCITSSRPDRECPSRRYVFERHPRKKLKLPVSDIKEV 176

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NR+DCEDKCLNEF+FVCRSA+YDS  ++C++SRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 177 TAANRSDCEDKCLNEFSFVCRSANYDSTLRSCAMSRFTRRTHPELLEDDPNSDYLENTCL 236

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG +++VKEENKRLGGPFEV+I+ N++L ECQ+ CL AEK+             
Sbjct: 237 NAERRCDGLIVYVKEENKRLGGPFEVEIFNNMTLEECQSLCLRAEKYFCRSIEFDDQTKQ 296

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  DL ++                +G ++P+NSVTSHLFA GRRPDTAFQ
Sbjct: 297 CILSEEDSVSQKDDLSISSSPTHHFYDLVCLDNQRGAEYPDNSVTSHLFASGRRPDTAFQ 356

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYS+RFR CRLSR+NQRDG RI
Sbjct: 357 RYRNSRLGGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSDRFRTCRLSRYNQRDGMRI 416

Query: 322 VYDPDYDYYENLMSKIT 338
           +YD DYDYYENLM  + 
Sbjct: 417 IYDADYDYYENLMPHLV 433

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858806|ref|XP_003704890.1| PREDICTED: uncharacterized protein LOC100875191 [Megachile rotundata]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/373 (71%), Positives = 302/373 (80%), Gaps = 39/373 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRD+APPFRVLEKCQELCLRDRTAT NLVR CTSFDFQPGSRIASFSGA EYEESTCYLT
Sbjct: 54  VRDSAPPFRVLEKCQELCLRDRTATNNLVRACTSFDFQPGSRIASFSGAAEYEESTCYLT 113

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
           RE A PEGIGNL+LVPNSVH+ EVCL S RIERECPNR YVFERH RKKLKLP  D+KE+
Sbjct: 114 REQAQPEGIGNLMLVPNSVHFTEVCLGSDRIERECPNRRYVFERHPRKKLKLPLTDIKEV 173

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NRTDCED+CLNEF+F+CRSA+YD+  ++C+LSRFTRR+HPE+LEDDPN+DYLENTCL
Sbjct: 174 SAANRTDCEDRCLNEFSFICRSATYDTALRSCALSRFTRRTHPELLEDDPNSDYLENTCL 233

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG  +FVKEENKRL GPFEVDIY NL+L ECQA CL AEK+             
Sbjct: 234 NAERRCDGLAVFVKEENKRLRGPFEVDIYTNLTLDECQALCLRAEKYFCRSVEFDEQTRQ 293

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  D+ ++                +G+++P++S +SHLF+DGRRPDTAFQ
Sbjct: 294 CVISEEDSVSQKDDIGISSSPSHHFYDLVCLDNPRGSEYPDSSSSSHLFSDGRRPDTAFQ 353

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+L GEFHSEITGRSLSECLDECLRQ SFQCRSAVYSE +  CRLSRFNQRDGHRI
Sbjct: 354 RYRNSRLSGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSEHYHTCRLSRFNQRDGHRI 413

Query: 322 VYDPDYDYYENLM 334
           +YD DYDYYENLM
Sbjct: 414 IYDADYDYYENLM 426

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029345|ref|XP_001987534.1| GH19913 [Drosophila grimshawi] gi|193903534|gb|EDW02401.1| GH19913 [Drosophila grimshawi]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/377 (68%), Positives = 302/377 (80%), Gaps = 39/377 (10%)

Query: 1   VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
           VRDTAPPFRVLEKCQ+LCLRDRT T NLVRTCTSFDFQPGSRI SF G  EYEES CYLT
Sbjct: 53  VRDTAPPFRVLEKCQDLCLRDRTGTNNLVRTCTSFDFQPGSRITSFGGTSEYEESLCYLT 112

Query: 61  RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
            E A PEGIG+L+LVPNSVH+NE+CL+S+R ERECP+R YVFERH RKKLKLP +D+KEI
Sbjct: 113 SEQAGPEGIGSLMLVPNSVHFNEICLTSSRPERECPSRRYVFERHPRKKLKLPISDIKEI 172

Query: 121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
            A+NR+DCEDKCLNEF+FVCRSA++DS  ++C+LSRFTRR+HPE++EDDPN+DYLENTCL
Sbjct: 173 TAANRSDCEDKCLNEFSFVCRSANFDSTMRSCTLSRFTRRTHPELMEDDPNSDYLENTCL 232

Query: 181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF------------- 227
           N+ERRCDG  +FVKEENKRLGGPFEVDI+ N++L ECQ  CL AEK+             
Sbjct: 233 NAERRCDGLAVFVKEENKRLGGPFEVDIFNNMTLEECQTMCLRAEKYFCRSVEFDDQSKQ 292

Query: 228 ----------KGTDLYLT----------------KGNDFPENSVTSHLFADGRRPDTAFQ 261
                     +  D+ ++                + ND+P+NSVTSHLF+ GRRPDTAFQ
Sbjct: 293 CILSEEDSISQKDDISISSSPTHHFYDLVCLDNQRANDYPDNSVTSHLFSSGRRPDTAFQ 352

Query: 262 RYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRI 321
           RYRNS+LGGEFHSEITGRSLSECLDECLRQ SFQCRSAVYS+RFR CRLSR+NQ+DG RI
Sbjct: 353 RYRNSRLGGEFHSEITGRSLSECLDECLRQTSFQCRSAVYSDRFRTCRLSRYNQKDGMRI 412

Query: 322 VYDPDYDYYENLMSKIT 338
           +YD DYDYYENLM  + 
Sbjct: 413 IYDADYDYYENLMLNVV 429

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
FB|FBgn0016047	1557	nompA "no mechanoreceptor pote	0.656	0.145	0.762	3e-144
WB|WBGene00009926	741	noah-2 [Caenorhabditis elegans	0.540	0.252	0.297	1.1e-22
WB|WBGene00007802	969	cutl-27 [Caenorhabditis elegan	0.549	0.196	0.242	1.9e-10
WB|WBGene00016422	1052	noah-1 [Caenorhabditis elegans	0.580	0.191	0.258	2.4e-08
FB|FBgn0039851	774	mey "morpheyus" [Drosophila me	0.456	0.204	0.304	3.3e-08
FB|FBgn0039704	744	neo "neyo" [Drosophila melanog	0.465	0.216	0.288	2.2e-07
FB|FBgn0029128	715	tyn "trynity" [Drosophila mela	0.271	0.131	0.373	3.4e-06
FB|FBgn0039852	805	nyo "nyobe" [Drosophila melano	0.462	0.198	0.281	1.8e-05
WB|WBGene00002827	812	let-653 [Caenorhabditis elegan	0.393	0.167	0.3	5.2e-05
WB|WBGene00009541	912	cutl-17 [Caenorhabditis elegan	0.690	0.262	0.218	0.00075

FB|FBgn0016047 nompA "no mechanoreceptor potential A" [Drosophila melanogaster (taxid:7227)]

 Score = 973 (347.6 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 173/227 (76%), Positives = 203/227 (89%)

Query:     1 VRDTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLT 60
             VRDTAPPFRVLEKCQ+LCLRDR+ + NLVRTCTSFDFQPGSRI SF G  EYEES CYLT
Sbjct:    54 VRDTAPPFRVLEKCQDLCLRDRSGSNNLVRTCTSFDFQPGSRITSFGGNSEYEESLCYLT 113

Query:    61 RETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEI 120
              E A PEGIG+L+LVPNSVH+NE+CL+S+R ERECP+R YVFERH RKKLKLP +D+KEI
Sbjct:   114 SEQAGPEGIGSLMLVPNSVHFNEICLTSSRPERECPSRRYVFERHPRKKLKLPISDIKEI 173

Query:   121 MASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCL 180
              A+NR+DCEDKCLNEF+FVCRSA++DS  ++C+LSRFTRR+HPE++EDDPN+DYLENTCL
Sbjct:   174 TAANRSDCEDKCLNEFSFVCRSANFDSTMRSCTLSRFTRRTHPELMEDDPNSDYLENTCL 233

Query:   181 NSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF 227
             N+ERRCDG  +FVKEENKRLGGPFEVDI+ N++L ECQ  CL AEK+
Sbjct:   234 NAERRCDGLAVFVKEENKRLGGPFEVDIFNNMTLEECQTMCLRAEKY 280

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0031012 "extracellular matrix" evidence=IDA

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS;IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0005576 "extracellular region" evidence=NAS

WB|WBGene00009926 noah-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 223 (83.6 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 64/215 (29%), Positives = 90/215 (41%)

Query:    14 CQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLV 73
             C + C  +   T    R C SF+F          G       TCY   + A P G   L 
Sbjct:    53 CAQYCRNNIEPTTGAQRVCASFNFD---------G-----RETCYFFDDAATPAGTSQLT 98

Query:    74 LVP--NSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDK 131
               P  N+ +Y + C+ +      C  R + FER AR   +L     K +   NR  C   
Sbjct:    99 ANPSANNFYYEKTCIPNVSAHEACTYRSFSFER-ARNT-QLEGFVKKSVTVENREHCLSA 156

Query:   132 CLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCD---G 188
             CL E  FVC+S ++      C LS   +RS P  +      DY +N CL+ + RC    G
Sbjct:   157 CLKEKEFVCKSVNFHYDTSLCELSVEDKRSKPTHVRMSEKIDYYDNNCLSRQNRCGPSGG 216

Query:   189 PVIFVKEENKRLGGPFEVDIYANLSLLECQ-AQCL 222
              ++FVK  N      FE+  Y +   +E Q + CL
Sbjct:   217 NLVFVKTTN------FEIRYYDHTQSVEAQESYCL 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

WB|WBGene00007802 cutl-27 [Caenorhabditis elegans (taxid:6239)]

 Score = 134 (52.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 52/214 (24%), Positives = 91/214 (42%)

Query:    24 ATINLVRTCTSF---DFQPGSRIASFSGAVEYEES---TCYLTRETAHPEGIGNLVL--- 74
             A I++V TC+S    +F P S  A       +       C     T + + I   +    
Sbjct:    67 AKIDMV-TCSSHCRANFDPSSEEAFPCEGFNFRAGRNPVCEFFPATGNKDNITRSLKSEE 125

Query:    75 VPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLN 134
             VP + ++ +VCL   ++ + C    Y+F+   +K  ++    ++ I A+    C ++C+ 
Sbjct:   126 VP-TFYFEKVCL---QMAKRCEESAYMFD--TKKGYRIDETPIRIIDATAEVQCMEECVK 179

Query:   135 EFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRC-DGPVIFV 193
                  C S  +   AK CS    TRR    ++  D   DY EN C++   RC +G + FV
Sbjct:   180 ---IQCMSFGFHHDAKRCSFYNSTRRD--AVIIRDIKMDYYENNCVHPTARCPNGRIEFV 234

Query:   194 KEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF 227
                   +   F + +    S+  C   C+ A +F
Sbjct:   235 VTRKADVPS-FGISLGVK-SIRSCMQACVNAGQF 266

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00016422 noah-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 60/232 (25%), Positives = 98/232 (42%)

Query:     3 DTAPPFRVLE-KCQELCLRDRTATINL-VRTCTSFDFQPGSRIASFS---GAVEYEESTC 57
             DT P   +   + Q + +     T+   +RT  + +    S   S S     VE+++ +C
Sbjct:    17 DTLPSVTLCPPETQTIFVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76

Query:    58 YLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADV 117
              + R  +     G+ +L    V  + VC S        P +  +FE+      ++     
Sbjct:    77 AVFRAGSEKATAGSQLLTKTCVKSDRVCQS--------PFQFDLFEQ------RILVGFA 122

Query:   118 KEIM-ASNRTDCEDKCLNEFT---FVCRSASYDSVAKTCSLSRFTRRSHPEML--EDDPN 171
             +E++ A+N   C   CLN F    F C SA +  V + C L+   R   P +   E D  
Sbjct:   123 REVVPAANIQICMAACLNAFDTFGFECESAMFYPVDQECILNTEDRLDRPSLFVEESDDT 182

Query:   172 ADYLENTCLNSERRCDGPVI--FVKEENKRLGGPFEVDIYANLSLLECQAQC 221
               Y++N C  S+  C  P I  ++  E K+L    E+D   N+ L  CQA C
Sbjct:   183 VIYMDNNCAGSQ--CYPPYITQYIAVEGKQLKN--ELDRIINVDLDSCQALC 230

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

FB|FBgn0039851 mey "morpheyus" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 57/187 (30%), Positives = 82/187 (43%)

Query:    49 AVEYEESTCYLTRETAH--PEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHA 106
             AV YE   C + R TA   P  +        +V+  + C       R C ++ +  +R  
Sbjct:   185 AVNYETGLCVMFRSTADQLPGSLSRSQYPVFTVYAQKSCFGV----RPC-SKAWCIDRV- 238

Query:   107 RKKLKLPA-ADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLS---RFTRRSH 162
              +  +LP  A   + +A+ R DC + CL E  F CRSA+Y + +  C LS   R T    
Sbjct:   239 -QGYRLPERAKASQSVATRR-DCIELCLGETEFTCRSANYYAHSGLCELSDMDRITLSDE 296

Query:   163 PEMLEDDPNADYLENTCLNSERR-CDGPVIFVKEENKRLGGPF--EVD-IYANLSLL-EC 217
               +   D  ADYLEN C     + C         E KR+ G     VD ++ N+  L EC
Sbjct:   297 ANIAAYD-GADYLENNCAEEPSKLC---------EFKRVAGRILKTVDSVHQNVQTLDEC 346

Query:   218 QAQCLGA 224
             +  CL A
Sbjct:   347 RDLCLTA 353

GO:0016021 "integral to membrane" evidence=ISM

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0003383 "apical constriction" evidence=IMP

FB|FBgn0039704 neo "neyo" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 53/184 (28%), Positives = 82/184 (44%)

Query:    49 AVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARK 108
             +V YE   C L   +AH + +   +       +      S    + C    YV +R    
Sbjct:   159 SVNYETGLCVLF--SAHADQLPGALTKSQFPVFTIYAQKSCLAVKPCSRAWYV-DRVQNY 215

Query:   109 KLKLPAADVKE-IMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRS--HPEM 165
             KLK    +VK  +  ++R +C + CL E  F CRSA+YD  +  C LS   R +    + 
Sbjct:   216 KLK---TEVKRTVSVASRRECFELCLGENDFTCRSANYDRTSGACELSELDRLTLAGSQA 272

Query:   166 LEDDPNADYLENTCLNSERR-CDGPVIFVKEENKRLGGPF--EVD-IYANLSLL-ECQAQ 220
              + +  +DYLEN C++   + C         E KRL G     VD +Y  +S + EC+  
Sbjct:   273 FQVNDGSDYLENHCVDEPNKLC---------EFKRLPGRILKTVDSVYQEVSSIDECREL 323

Query:   221 CLGA 224
             CL +
Sbjct:   324 CLNS 327

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0003383 "apical constriction" evidence=IMP

FB|FBgn0029128 tyn "trynity" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 37/99 (37%), Positives = 46/99 (46%)

Query:    90 RIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVA 149
             R E  C +R + FER   K ++    D   I  S +  C   CLNE  FVCRS  YD   
Sbjct:   124 RSENVC-HRPWSFERVPNKVIR--GLDNALIYTSTKEACLSACLNERRFVCRSVEYDYNN 180

Query:   150 KTCSLSRFTRRSHPEMLE--DDPNADYLENTCLNSERRC 186
               C LS   RRS  + ++  D    DY EN CL   + C
Sbjct:   181 MKCVLSDSDRRSSGQFVQLVDAQGTDYFENLCLKPAQAC 219

GO:0003674 "molecular_function" evidence=ND

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0003383 "apical constriction" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

FB|FBgn0039852 nyo "nyobe" [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 52/185 (28%), Positives = 80/185 (43%)

Query:    49 AVEYEESTCYLTRETAH--PEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHA 106
             AV YE   C L + TA   P  +        +++  + CL      R C ++ +  +R  
Sbjct:   160 AVNYETGLCVLFKTTADKLPGSLSRSQFPVFTIYAQKSCLGV----RPC-SKAWCIDRVQ 214

Query:   107 RKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTR--RSHPE 164
               +L       + +++  R DC + CL E  F CRSA+Y   +  C LS   R   S   
Sbjct:   215 GYRLPEHVKSSQTVLS--RRDCLELCLGETEFTCRSANYYRHSGLCELSDMDRITLSAGG 272

Query:   165 MLEDDPNADYLENTCLNSERR-CDGPVIFVKEENKRLGGPF--EVD-IYANLSLL-ECQA 219
              +E    ADYLEN C     + C         E KR+ G     VD +Y +++ + EC+ 
Sbjct:   273 SVEPYDGADYLENNCAEEPSKLC---------EFKRISGKILKAVDSVYQDINTIDECRD 323

Query:   220 QCLGA 224
              CL +
Sbjct:   324 LCLNS 328

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0003383 "apical constriction" evidence=IMP

WB|WBGene00002827 let-653 [Caenorhabditis elegans (taxid:6239)]

 Score = 129 (50.5 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 48/160 (30%), Positives = 75/160 (46%)

Query:    81 YNEVCLSSTRIERECPNRH---YVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFT 137
             Y + CL STR   +C   +   Y+ +R+  +K     + +K    +N  +C   CL+E +
Sbjct:   112 YWKYCLPSTR---KCSGEYAFTYLSDRYMDQK-----SVIKWTTKANLEECLSDCLDEKS 163

Query:   138 FVCRSASYDSVAKTCSLSRFTRRSHPEM--LEDDPN--ADYLENTCLN-SE-----RRCD 187
             F CRS S++     C +S+ ++ S PE   L ++PN   DY EN C N SE       C 
Sbjct:   164 FECRSISFNRTDGGCHMSKDSQISRPEAIRLNNNPNYRIDYYENNCYNLSESFTFKHECR 223

Query:   188 GPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKF 227
                I V  ++ RL  P+   IY       C+ +   A +F
Sbjct:   224 DNGISVSVKS-RL--PYTGAIYGLYDFFTCRTEPKEATEF 260

GO:0040011 "locomotion" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

WB|WBGene00009541 cutl-17 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00075, P = 0.00075
 Identities = 58/265 (21%), Positives = 110/265 (41%)

Query:    51 EYEEST--CYLTRETAHPEGIGNLVLVPNSVHY-NEVCLSSTRIERECPNRHYVFERHAR 107
             EY+ S   C    +   P G   L     ++ +  ++CL     E  C    Y FER+ +
Sbjct:    69 EYDASILQCSHHSDDGQPFGASVLAKASQTISFFQQICLLE---EAVC-KAPYSFERYPQ 124

Query:   108 KKLKLPAADVKEIMASNRTDCEDKC-LNE--FTFVCRSASYDSVAKTCSLSRFTRRSHPE 164
               L   A  +K +     +DC  KC L++  + F+C+SA Y      C ++R  +  +P+
Sbjct:   125 SILIGHA--MKVLTVDGLSDCLSKCALSQRSYDFLCKSAIYYYETGECIMNRDNKFIYPK 182

Query:   165 MLED---DPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQC 221
             + +    D   DY EN C +   + +  + +V+ E   +    +V I  +    EC   C
Sbjct:   183 LFKTNILDTLVDYFENNCADVSCKPEETLHWVRTEEYLIDESKDV-IVESSDAQECNQLC 241

Query:   222 LGAEKFKGTDLYLTKGNDFPENSVTSHLFAD----GRRPDTAFQRYRNSKLG-GEFHSEI 276
                 K  G + +  K   +  +    HL A+    G + D   +R+  + L  GE+  + 
Sbjct:   242 QN-NKI-GEENFPCKAFAYSNSKQECHLTAESSYVGHKGD---KRFNLAPLNSGEYFEKY 296

Query:   277 TGRSLSECLDECLRQASFQCRSAVY 301
                +  +C++      + +  ++ Y
Sbjct:   297 CLPTNLQCIEASFELVANRMMTSAY 321

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	346
cd01099	80	cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like d	6e-17
cd01099	80	cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like d	9e-12
smart00473	78	smart00473, PAN_AP, divergent subfamily of APPLE d	3e-10
pfam00024	78	pfam00024, PAN_1, PAN domain	2e-09
pfam00024	78	pfam00024, PAN_1, PAN domain	3e-07
smart00473	78	smart00473, PAN_AP, divergent subfamily of APPLE d	1e-06

>gnl|CDD|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 257 DTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQR 316
           D  F    N  L  E  +EIT  SL ECL +CL +  F CRS  Y+ + + C LS  ++ 
Sbjct: 3   DFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDEDRM 62

Query: 317 DGH-RIVYDPDYDYYEN 332
               +++YD + DYYEN
Sbjct: 63  SSGVKLLYDSNVDYYEN 79

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. Length = 80

>gnl|CDD|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins

 Score = 59.8 bits (145), Expect = 9e-12
 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 97  NRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSR 156
              + F     K L        EI  ++  +C  KCL E  F CRS +Y+  +K C LS 
Sbjct: 1   LNDFKFVLVLNKILVS--EVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58

Query: 157 FTRRSHPEMLEDDPNADYLENT 178
             R S    L  D N DY EN 
Sbjct: 59  EDRMSSGVKLLYDSNVDYYENK 80

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. Length = 80

>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 257 DTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQR 316
           D  F R  N+KL G     I+  SL EC  +CL  ++  CRS  Y+   + C L   +  
Sbjct: 3   DDCFVRLPNTKLPGFSRIVISVASLEECASKCL-NSNCSCRSFTYNNGTKGCLLWSESSL 61

Query: 317 DGHRIVYDPDYDYYENL 333
              R+      D YE +
Sbjct: 62  GDARLFPSGGVDLYEKI 78

Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions. Length = 78

>gnl|CDD|215662 pfam00024, PAN_1, PAN domain

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 102 FERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRS 161
           FER     L     DV  +   +  +C   C NE   VCRS +Y+  +K C L   +  S
Sbjct: 3   FERVPGTSLS--GTDVSVVDVPSAEECAALCTNE-PRVCRSFTYNPKSKECLLKSSSSGS 59

Query: 162 -HPEMLEDDPNADYLENTC 179
             P +   D   DY E +C
Sbjct: 60  LPPRLKRSDQGVDYYEKSC 78

The PAN domain contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge the links the N and C termini of the domain. The domain is found in diverse proteins, in some they mediate protein-protein interactions, in others they mediate protein-carbohydrate interactions. Length = 78

>gnl|CDD|215662 pfam00024, PAN_1, PAN domain

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 259 AFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDG 318
           +F+R   + L G   S +   S  EC   C       CRS  Y+ + + C L   +    
Sbjct: 2   SFERVPGTSLSGTDVSVVDVPSAEECAALC-TNEPRVCRSFTYNPKSKECLLKSSSSGSL 60

Query: 319 HR--IVYDPDYDYYEN 332
                  D   DYYE 
Sbjct: 61  PPRLKRSDQGVDYYEK 76

The PAN domain contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge the links the N and C termini of the domain. The domain is found in diverse proteins, in some they mediate protein-protein interactions, in others they mediate protein-carbohydrate interactions. Length = 78

>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 102 FERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRS 161
           F R    KL  P      I  ++  +C  KCLN     CRS +Y++  K C L   +   
Sbjct: 6   FVRLPNTKL--PGFSRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSLG 62

Query: 162 HPEMLEDDPNADYLENT 178
              +       D  E  
Sbjct: 63  DARLFPSG-GVDLYEKI 78

Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
cd01099	80	PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr	99.6
PF00024	79	PAN_1: PAN domain This Prosite entry concerns appl	99.31
cd01099	80	PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr	99.14
PF00024	79	PAN_1: PAN domain This Prosite entry concerns appl	98.87
smart00473	78	PAN_AP divergent subfamily of APPLE domains. Apple	98.62
smart00473	78	PAN_AP divergent subfamily of APPLE domains. Apple	98.05
cd01100	73	APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d	92.9
PF14295	51	PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.	92.48
cd01100	73	APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d	92.12
smart00223	79	APPLE APPLE domain. Four-fold repeat in plasma kal	92.1
PF14295	51	PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.	89.48
smart00223	79	APPLE APPLE domain. Four-fold repeat in plasma kal	85.68
cd00129	80	PAN_APPLE PAN/APPLE-like domain; present in N-term	85.07
PF08276	66	PAN_2: PAN-like domain; InterPro: IPR013227 PAN do	81.82
PF08276	66	PAN_2: PAN-like domain; InterPro: IPR013227 PAN do	80.74

>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins

Probab=99.60  E-value=2.2e-15  Score=118.25  Aligned_cols=79  Identities=35%  Similarity=0.480  Sum_probs=72.2

Q ss_pred             CceeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceecc
Q psy1624          98 RHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLEN  177 (346)
Q Consensus        98 r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN  177 (346)
                      ..|.|+++++++|+|  ++..++.+.|+++|+.+|+.+.+|.|||++|++.+++|+||++++.+.+..++.++++|||||
T Consensus         2 ~~~~f~~~~~~~l~~--~~~~~~~~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~~~~~~~~~~~~~~~~~dyyE~   79 (80)
T cd01099           2 NDFKFVLVLNKILVS--EVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDEDRMSSGVKLLYDSNVDYYEN   79 (80)
T ss_pred             CcccEEEecceeecc--eeeEEEecCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeCCCccccccccccccCceeeec
Confidence            358899999999998  678888889999999999999899999999999999999999999988877777779999998


Q ss_pred             c
Q psy1624         178 T  178 (346)
Q Consensus       178 ~  178 (346)
                      .
T Consensus        80 ~   80 (80)
T cd01099          80 K   80 (80)
T ss_pred             C
Confidence            4

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []

Probab=99.31  E-value=1.9e-12  Score=99.21  Aligned_cols=77  Identities=40%  Similarity=0.689  Sum_probs=66.8

Q ss_pred             eeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCccc-CCCcceeccc
Q psy1624         100 YVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLED-DPNADYLENT  178 (346)
Q Consensus       100 ~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~-~~~~dYfEN~  178 (346)
                      |.|++++|+.|.|  +.++++.+.++++|+.+|+.+.. .|+|++|+...+.|.|++.++.+.+..+.. .+.++|||+.
T Consensus         2 ~~f~~~~~~~l~~--~~~~~~~v~s~~~C~~~C~~~~~-~C~s~~y~~~~~~C~L~~~~~~~~~~~~~~~~~~~~~ye~~   78 (79)
T PF00024_consen    2 WAFERIPGYRLSG--HSIKEINVPSLEECAQLCLNEPR-RCKSFNYDPSSKTCYLSSSDRSSLPPRLTPSSPNVDYYEKS   78 (79)
T ss_dssp             -TEEEEEEEEEES--CEEEEEEESSHHHHHHHHHHSTT--ESEEEEETTTTEEEEECSSSSSESTEEEEEEEEEEEEEEG
T ss_pred             CCeEEECCEEEeC--CcceEEcCCCHHHHHhhcCcCcc-cCCeEEEECCCCEEEEcCCCCCcccceeEeccCcEEEEEec
Confidence            7899999999999  56677788999999999999874 699999999999999999999995555555 6799999998


Q ss_pred             c
Q psy1624         179 C  179 (346)
Q Consensus       179 C  179 (346)
                      |
T Consensus        79 C   79 (79)
T PF00024_consen   79 C   79 (79)
T ss_dssp             C
T ss_pred             C
Confidence            8

These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....

>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins

Probab=99.14  E-value=6.1e-11  Score=92.97  Aligned_cols=77  Identities=40%  Similarity=0.666  Sum_probs=68.5

Q ss_pred             CcccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCC-CceeecCCCchhhhhc
Q psy1624         257 DTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD-GHRIVYDPDYDYYENL  333 (346)
Q Consensus       257 ~~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~-~~~~~~~~~~dy~~~~  333 (346)
                      +..|.+.++..|.|.+..++...++++|+.+|++...|.|||++|..+.+.|.|++.++.. +...++++.+|||||.
T Consensus         3 ~~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~~~~~~~~~~~~~~~~~dyyE~~   80 (80)
T cd01099           3 DFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDEDRMSSGVKLLYDSNVDYYENK   80 (80)
T ss_pred             cccEEEecceeecceeeEEEecCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeCCCccccccccccccCceeeecC
Confidence            3567788999999988888888999999999999888999999999999999999999954 5678888889999973

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []

Probab=98.87  E-value=1.3e-09  Score=83.27  Aligned_cols=75  Identities=33%  Similarity=0.585  Sum_probs=66.5

Q ss_pred             ccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCC-Cceeec-CCCchhhhhcC
Q psy1624         259 AFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD-GHRIVY-DPDYDYYENLM  334 (346)
Q Consensus       259 ~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~-~~~~~~-~~~~dy~~~~c  334 (346)
                      .|+++.|..|.+.+..++...++.+|..+|+++.. .|+|++|....+.|.|+..++.. +..+.. ++.++|||+.|
T Consensus         3 ~f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~-~C~s~~y~~~~~~C~L~~~~~~~~~~~~~~~~~~~~~ye~~C   79 (79)
T PF00024_consen    3 AFERIPGYRLSGHSIKEINVPSLEECAQLCLNEPR-RCKSFNYDPSSKTCYLSSSDRSSLPPRLTPSSPNVDYYEKSC   79 (79)
T ss_dssp             TEEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT--ESEEEEETTTTEEEEECSSSSSESTEEEEEEEEEEEEEEGC
T ss_pred             CeEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcc-cCCeEEEECCCCEEEEcCCCCCcccceeEeccCcEEEEEecC
Confidence            79999999999988888844499999999999985 69999999999999999888888 667776 77899999987

These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....

>smart00473 PAN_AP divergent subfamily of APPLE domains

Probab=98.62  E-value=1.1e-07  Score=72.20  Aligned_cols=74  Identities=27%  Similarity=0.370  Sum_probs=59.6

Q ss_pred             eEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceeccc
Q psy1624         101 VFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENT  178 (346)
Q Consensus       101 ~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN~  178 (346)
                      .|.++++..|.+.  +.....+.++++|+.+|+.+ ++.|+|++|+...+.|+|+..+..+.+. .....+++|||+.
T Consensus         5 ~f~~~~~~~l~~~--~~~~~~~~s~~~C~~~C~~~-~~~C~s~~y~~~~~~C~l~~~~~~~~~~-~~~~~~~~~y~~~   78 (78)
T smart00473        5 CFVRLPNTKLPGF--SRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSLGDAR-LFPSGGVDLYEKI   78 (78)
T ss_pred             eeEEecCccCCCC--cceeEcCCCHHHHHHHhCCC-CCceEEEEEcCCCCEEEEeeCCccccce-ecccCCceeEEeC
Confidence            5999999999763  44446789999999999995 5799999999888999999955555554 4456688999873

Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.

>smart00473 PAN_AP divergent subfamily of APPLE domains

Probab=98.05  E-value=7.6e-06  Score=61.90  Aligned_cols=75  Identities=31%  Similarity=0.465  Sum_probs=56.8

Q ss_pred             cccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCCCceeecCCCchhhhhc
Q psy1624         258 TAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENL  333 (346)
Q Consensus       258 ~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~~~~~~~~~~~dy~~~~  333 (346)
                      ..|.++++..|.+.....+...++++|..+|+++ .+.|++++|....+.|.|+..+......+..+..+|||++.
T Consensus         4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~-~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~~   78 (78)
T smart00473        4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEKI   78 (78)
T ss_pred             ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCC-CCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEeC
Confidence            4688889999886555456677999999999994 37999999998889999977223233344555568999863

Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.

>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins

Probab=92.90  E-value=0.17  Score=38.49  Aligned_cols=53  Identities=21%  Similarity=0.471  Sum_probs=42.7

Q ss_pred             EEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccC
Q psy1624         102 FERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFT  158 (346)
Q Consensus       102 Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~d  158 (346)
                      |..+++..+.|.  +.....+.+.++|..+|+...  .|..+.|+...+.|.|-...
T Consensus         6 ~~~~~~~~~~g~--d~~~~~~~s~~~Cq~~C~~~~--~C~afT~~~~~~~C~lk~~~   58 (73)
T cd01100           6 FRQGSNVDFRGG--DLSTVFASSAEQCQAACTADP--GCLAFTYNTKSKKCFLKSSE   58 (73)
T ss_pred             ccccCCCccccC--CcceeecCCHHHHHHHcCCCC--CceEEEEECCCCeEEcccCC
Confidence            555567777774  444556889999999999975  89999999999999988664

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A

Probab=92.48  E-value=0.099  Score=36.24  Aligned_cols=37  Identities=32%  Similarity=0.719  Sum_probs=18.3

Q ss_pred             CcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEE
Q psy1624           7 PFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYL   59 (346)
Q Consensus         7 ~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L   59 (346)
                      .+.++++|+.+|..+.        .|.+|.|.+.        ......+.|+|
T Consensus        14 ~~~s~~~C~~~C~~~~--------~C~~~~~~~~--------~~~~~~~~C~L   50 (51)
T PF14295_consen   14 TASSPEECQAACAADP--------GCQAFTFNPP--------GCPSSSGRCYL   50 (51)
T ss_dssp             ----HHHHHHHHHTST--------T--EEEEETT--------EE---------
T ss_pred             cCCCHHHHHHHccCCC--------CCCEEEEECC--------CcccccccccC
Confidence            5779999999999876        8999999883        01223677876

>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins

Probab=92.12  E-value=0.21  Score=37.92  Aligned_cols=35  Identities=26%  Similarity=0.665  Sum_probs=31.1

Q ss_pred             cccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccC
Q psy1624           8 FRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRET   63 (346)
Q Consensus         8 ~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~   63 (346)
                      +.+.++|+.+|+.+.        .|..|+|+..             .+.|+|....
T Consensus        24 ~~s~~~Cq~~C~~~~--------~C~afT~~~~-------------~~~C~lk~~~   58 (73)
T cd01100          24 ASSAEQCQAACTADP--------GCLAFTYNTK-------------SKKCFLKSSE   58 (73)
T ss_pred             cCCHHHHHHHcCCCC--------CceEEEEECC-------------CCeEEcccCC
Confidence            568999999999987        9999999887             8999998764

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>smart00223 APPLE APPLE domain

Probab=92.10  E-value=0.25  Score=38.63  Aligned_cols=35  Identities=26%  Similarity=0.554  Sum_probs=30.0

Q ss_pred             CcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccC---ceEEEcc
Q psy1624           7 PFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEES---TCYLTRE   62 (346)
Q Consensus         7 ~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~---~C~L~~~   62 (346)
                      -+.++++|+.+|+.+.        .|+.|+|...             ..   .|+|-++
T Consensus        20 ~~~~~~~Cq~~Ct~~~--------~C~~FTf~~~-------------~~~~~~C~LK~s   57 (79)
T smart00223       20 YVPSAQVCQKRCTSHP--------RCLFFTFSTN-------------EPPEEKCLLKDS   57 (79)
T ss_pred             ecCCHHHHHHhhcCCC--------CccEEEeeCC-------------CCCCCEeEeCcC
Confidence            3678999999999876        9999999887             55   8999876

Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.

>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A

Probab=89.48  E-value=0.28  Score=33.86  Aligned_cols=33  Identities=21%  Similarity=0.619  Sum_probs=17.4

Q ss_pred             eecCCHHHHHHHhhccCCCceeceeecC-----CCceeEe
Q psy1624         120 IMASNRTDCEDKCLNEFTFVCRSASYDS-----VAKTCSL  154 (346)
Q Consensus       120 ~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~-----~~~~C~L  154 (346)
                      +.+.+.++|.++|....  .|..+.|..     ..+.|.|
T Consensus        13 ~~~~s~~~C~~~C~~~~--~C~~~~~~~~~~~~~~~~C~L   50 (51)
T PF14295_consen   13 VTASSPEECQAACAADP--GCQAFTFNPPGCPSSSGRCYL   50 (51)
T ss_dssp             -----HHHHHHHHHTST--T--EEEEETTEE---------
T ss_pred             ccCCCHHHHHHHccCCC--CCCEEEEECCCcccccccccC
Confidence            36889999999999865  899999988     5678876

>smart00223 APPLE APPLE domain

Probab=85.68  E-value=2.2  Score=33.38  Aligned_cols=49  Identities=12%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             ecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCc---eeEeccc
Q psy1624         105 HARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAK---TCSLSRF  157 (346)
Q Consensus       105 ~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~---~C~Ls~~  157 (346)
                      .++.-+.|  .+...+.+.+.++|.+.|....  .|+-+.|+....   .|.|-..
T Consensus         6 ~~~~df~G--~Dl~~~~~~~~~~Cq~~Ct~~~--~C~~FTf~~~~~~~~~C~LK~s   57 (79)
T smart00223        6 YKNVDFRG--SDINTVYVPSAQVCQKRCTSHP--RCLFFTFSTNEPPEEKCLLKDS   57 (79)
T ss_pred             ccCccccC--ceeeeeecCCHHHHHHhhcCCC--CccEEEeeCCCCCCCEeEeCcC
Confidence            34555666  4677888999999999999865  899999999888   9999876

Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.

>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins

Probab=85.07  E-value=2  Score=33.71  Aligned_cols=38  Identities=21%  Similarity=0.623  Sum_probs=31.6

Q ss_pred             cCCHHHHHHHhhc-cCCCceeceeecCCCceeEecccCc
Q psy1624         122 ASNRTDCEDKCLN-EFTFVCRSASYDSVAKTCSLSRFTR  159 (346)
Q Consensus       122 ~~S~~~Cl~~Cl~-e~~f~CrSa~y~~~~~~C~Ls~~dr  159 (346)
                      +.+.++|.++|+. +.+..|+++.|....+.|.+-..+.
T Consensus        24 ~~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l   62 (80)
T cd00129          24 ANTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNS   62 (80)
T ss_pred             ccCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcc
Confidence            4799999999999 4468999999976667898887765

Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []

Probab=81.82  E-value=3.9  Score=30.50  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             eEEEecCceecCCccceeEe-ecCCHHHHHHHhhccCCCceeceeecC--CCceeEecccC
Q psy1624         101 VFERHARKKLKLPAADVKEI-MASNRTDCEDKCLNEFTFVCRSASYDS--VAKTCSLSRFT  158 (346)
Q Consensus       101 ~Fer~~~~~L~g~~~~~~~~-~~~S~~~Cl~~Cl~e~~f~CrSa~y~~--~~~~C~Ls~~d  158 (346)
                      .|-++++..|-+.  ....+ .+.+.++|..+||+.=  .|..+.|..  ..+.|.|-..+
T Consensus         6 ~F~~l~~~~~p~~--~~~~~~~~~s~~~C~~~Cl~nC--sC~Ayay~~~~~~~~C~lW~~~   62 (66)
T PF08276_consen    6 GFLKLPNMKLPDF--DNAIVDSSVSLEECEKACLSNC--SCTAYAYSNLSGGGGCLLWYGD   62 (66)
T ss_pred             EEEEECCeeCCCC--cceeeecCCCHHHHHhhcCCCC--CEeeEEeeccCCCCEEEEEcCE
Confidence            6999999988553  23333 5799999999999964  799988865  46899876543

These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs

>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []

Probab=80.74  E-value=3.5  Score=30.73  Aligned_cols=51  Identities=29%  Similarity=0.450  Sum_probs=39.9

Q ss_pred             cccceeeccccCCccceee-cCCChhHHHHHHhccCceeecceeeee--ecceEEe
Q psy1624         258 TAFQRYRNSKLGGEFHSEI-TGRSLSECLDECLRQASFQCRSAVYSE--RFRICRL  310 (346)
Q Consensus       258 ~~f~r~~~~~l~~~~~~~~-~~~sl~~C~~~C~~~~~~~Crs~~y~~--~~~~c~L  310 (346)
                      ..|-++++++|++.....+ .+.++++|...|+++=  .|.+.-|..  ....|.|
T Consensus         5 d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nC--sC~Ayay~~~~~~~~C~l   58 (66)
T PF08276_consen    5 DGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNC--SCTAYAYSNLSGGGGCLL   58 (66)
T ss_pred             CEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCC--CEeeEEeeccCCCCEEEE
Confidence            5788889999988544443 6689999999999996  788866654  4588888

These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 37/312 (11%), Positives = 85/312 (27%), Gaps = 80/312 (25%)

Query: 74  LVPNSVHYNEVCLSSTRIEREC------PNRHYVFERHARKKLKLPAADVKEIMASNRTD 127
           + PN   +      S+ I+           R    + +    L L   +V          
Sbjct: 209 IDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNV---------- 253

Query: 128 CEDKCLNEFTFVCR---SASYDSVAKTCSLSRFTRRS---HPEMLEDDPNADYLENTCLN 181
              K  N F   C+   +  +  V    S +  T  S   H   L  D     L    L+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLD 312

Query: 182 ------SERRCDG-P----VI--FVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFK 228
                         P    +I   +++          V+     +++E     L   +++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 229 GTDLYLTKGND---FPENS-VTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSEC 284
              ++    +    FP ++ + + L                S +  +         +++ 
Sbjct: 373 --KMF----DRLSVFPPSAHIPTILL---------------SLIWFDVIKSDVMVVVNKL 411

Query: 285 LDECL---RQASFQCRSAVYSERFRICRLSRFNQRDGHRIV---YDPDYDYYENLMSKIT 338
               L   +         + S    + ++   N+   HR +   Y+    +  + +    
Sbjct: 412 HKYSLVEKQPKESTIS--IPSIYLEL-KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 339 -----FPFFSYH 345
                +    +H
Sbjct: 469 LDQYFYSHIGHH 480

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 260 FQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGH 319
           +   + + L      ++   S+ EC  +C     F CR+  Y  + + C +   N++   
Sbjct: 6   YVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKS-S 64

Query: 320 RIVYDPDYDYYEN 332
            I+   D   +E 
Sbjct: 65  IIIRMRDVVLFEK 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	98.53
3hms_A	101	Hepatocyte growth factor; HGF/SF, hormone/growth f	98.23
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	98.06
2yil_A	138	Microneme antigen L2; sugar binding protein, apple	97.73
4a5v_A	161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	97.64
3hms_A	101	Hepatocyte growth factor; HGF/SF, hormone/growth f	97.48
3sp8_A	264	Hepatocyte growth factor alpha chain; kringle doma	97.38
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	95.85
2ll3_A	82	Micronemal protein 4; cell adhesion; NMR {Toxoplas	95.64
4a5v_A	161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	95.54
3sp8_A	264	Hepatocyte growth factor alpha chain; kringle doma	95.3
2yil_A	138	Microneme antigen L2; sugar binding protein, apple	94.99
2qj2_A	184	Hepatocyte growth factor; HGF/SF, hormone/growth f	94.71
2ll3_A	82	Micronemal protein 4; cell adhesion; NMR {Toxoplas	90.12
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	89.84
2qj2_A	184	Hepatocyte growth factor; HGF/SF, hormone/growth f	88.79

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=98.53  E-value=2.3e-06  Score=89.11  Aligned_cols=263  Identities=17%  Similarity=0.275  Sum_probs=153.7

Q ss_pred             ccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccCCCCCCCcceeeecC--ceeEecccc
Q psy1624           9 RVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPN--SVHYNEVCL   86 (346)
Q Consensus         9 ~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~~~p~g~~~l~~~p~--~~Y~eK~Cl   86 (346)
                      .+.++|+.+|....        .|+.|+|.+.+..     .-.-....|+|.+..+...   .-+...+  +-+..|.|.
T Consensus        41 ~~~~~C~~~C~~~~--------~C~~ft~~~~~~~-----~~~~~~~~C~LK~~~~~~~---~~~~~~~~~sg~~~~~c~  104 (625)
T 2f83_A           41 PSAKYCQVVCTYHP--------RCLLFTFTAESPS-----EDPTRWFTCVLKDSVTETL---PRVNRTAAISGYSFKQCS  104 (625)
T ss_dssp             SSHHHHHHHHHHSS--------SCCEEEEECCCTT-----SCSTTTTEEEEECCGGGCC---CEEEEEEEEEEECSTTCC
T ss_pred             CCHHHHHHhccCCC--------CeeEEEEeCCCCC-----ccccccceEEecccccCCC---CccccCCcccccccccCC
Confidence            46899999999976        9999999876110     0000012699998753211   1222333  456668888


Q ss_pred             CccccccCCCCCceeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeec-------CCCceeEecccCc
Q psy1624          87 SSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYD-------SVAKTCSLSRFTR  159 (346)
Q Consensus        87 ~~~~~~~~C~~r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~-------~~~~~C~Ls~~dr  159 (346)
                      ..+   ..|..   .  ...+.-+.|  .+...+.+.+.++|.++|....  .|+.+.|.       ...+.|.|-+...
T Consensus       105 ~~~---~~C~~---~--~~~~~d~~G--~d~~~~~~~s~~~C~~~C~~~~--~C~~fTy~~~~~~~~~~~~~C~LK~s~~  172 (625)
T 2f83_A          105 HQI---SACNK---D--IYVDLDMKG--INYNSSVAKSAQECQERCTDDV--HCHFFTYATRQFPSLEHRNICLLKHTQT  172 (625)
T ss_dssp             SCC---CCCCC---C--CEEEEEEEC--EEEEEEECSCHHHHHHHHHTSS--SCSEEEEECSSCSCSSSTTEEEEEECSS
T ss_pred             CCh---hcCch---h--hccccceec--ceeeeEeeCCHHHHHHhccCCC--CCcEEEecCCcccCCCCCceeEeccCcC
Confidence            765   46732   1  224555566  3555677999999999998864  89999994       4557999987554


Q ss_pred             ccCCCCcc-cCCCcceecccccCCccCCCCcceEEEecccccCCCceEEEecCCCHHHHHHHHhcCCCCcceee-ecCC-
Q psy1624         160 RSHPEMLE-DDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDL-YLTK-  236 (346)
Q Consensus       160 ~t~p~~f~-~~~~~dYfEN~C~~~~~~C~~~~~F~r~~~~~L~g~~~vd~~~~~s~~eC~~~Cl~~~~F~CrS~-y~~~-  236 (346)
                      .+.|..-. .....-|-...|......|.. ..|.   |..+.|. .++.....+.++|+++|....  .|+.| |... 
T Consensus       173 ~~~~~~~~~~g~vSG~s~k~c~~~~~~c~~-~~~~---~~d~~g~-d~~~~~~~~~~~C~~~C~~~~--~C~~fT~~~~~  245 (625)
T 2f83_A          173 GTPTRITKLDKVVSGFSLKSCALSNLACIR-DIFP---NTVFADS-NIDSVMAPDAFVCGRICTHHP--GCLFFTFFSQE  245 (625)
T ss_dssp             SSCSEEEEEEEEEEEECCTTTTCCCSCCCC-CCEE---EEECCSE-EEEEEECSSHHHHHHHHHTCS--SCSEEEEECTT
T ss_pred             CCCceeccccccccCCCCCCCCCchhhchh-hccc---CccccCc-ceeeeecCCHHHHHHhccCCC--CCcEEEEecCC
Confidence            33332110 111111223566654445642 2244   4455552 344334569999999999774  79999 7432 


Q ss_pred             -----CCcccccccccccc-------c-----cC---C--C----CCcccceeeccccCCccceeecCCChhHHHHHHhc
Q psy1624         237 -----GNDFPENSVTSHLF-------A-----DG---R--R----PDTAFQRYRNSKLGGEFHSEITGRSLSECLDECLR  290 (346)
Q Consensus       237 -----g~~~~~~~l~~~~~-------~-----s~---~--~----~~~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~  290 (346)
                           ....|.  |.+..-       .     |+   +  +    ..+.-.-|.+....|.........+...|...|..
T Consensus       246 ~~~~~~~~~C~--LK~s~~g~~~~~~~~~~~~sG~~~~~c~~s~p~~c~~~~~~~~df~G~~l~~~~~~~~~~Cq~~C~~  323 (625)
T 2f83_A          246 WPKESQRNLCL--LKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTN  323 (625)
T ss_dssp             CSSGGGTTEEE--EEECSSSSCSCCEEEEEEEEEECCGGGSTTSCSSCCCCCEETCEECCEEEEEEEESSTTHHHHHHHH
T ss_pred             ccCcccCCeEE--eecCCCCCccceeeccccccCCccccccCCCCCCChhhcCCCccccCCccceeecCCHHHHhhhccC
Confidence                 235563  332110       0     11   0  0    01222233455555643333434588999999998


Q ss_pred             cCceeecceeeeee-------cceEEe
Q psy1624         291 QASFQCRSAVYSER-------FRICRL  310 (346)
Q Consensus       291 ~~~~~Crs~~y~~~-------~~~c~L  310 (346)
                      ..  .|.-..|...       ...|.|
T Consensus       324 ~~--~C~~ft~~~~~~~C~~~~~~C~l  348 (625)
T 2f83_A          324 AV--RCQFFTYTPAQASCNEGKGKCYL  348 (625)
T ss_dssp             ST--TCCEEEEECCSTTTSCSCEEEEE
T ss_pred             CC--CccceEeccCccccccccccccc
Confidence            85  6766555443       336766

>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A

Probab=98.23  E-value=1e-06  Score=71.00  Aligned_cols=78  Identities=22%  Similarity=0.363  Sum_probs=63.1

Q ss_pred             eeEEEecCceecCCcc--ceeEeecCCHHHHHHHhhccC--CCceeceeecCCCceeEecccCcccCCCCcccCCCccee
Q psy1624         100 YVFERHARKKLKLPAA--DVKEIMASNRTDCEDKCLNEF--TFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYL  175 (346)
Q Consensus       100 ~~Fer~~~~~L~g~~~--~~~~~~~~S~~~Cl~~Cl~e~--~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYf  175 (346)
                      =.|++..|..|...+.  ..+...+.+.++|..+|..+.  .|.|||+.|+..++.|+|...++.|.+-....+...|.|
T Consensus        15 ~~y~kTeg~~L~~~~~~~~~~~~~~~s~eeCA~kC~~~~~~~F~CRAF~y~~k~q~C~ll~~ns~s~~v~~~~~~~~dLY   94 (101)
T 3hms_A           15 HEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLY   94 (101)
T ss_dssp             GGEEEEEEEEEEECCTTCCCEEEECSCHHHHHHHHHHCTTCSSCCCEEEEETTTTEEEEESCCTTSTTEEEEEEEEEEEE
T ss_pred             HHhhhcCCeEEeccCCCccceeeccCCHHHHHHHHHhccCCCcceeeeEEecCCCcEEECCCcCCCchheeeccCceeee
Confidence            3599999999876222  255667999999999999987  799999999999999999999998876544455567777


Q ss_pred             cc
Q psy1624         176 EN  177 (346)
Q Consensus       176 EN  177 (346)
                      |+
T Consensus        95 EK   96 (101)
T 3hms_A           95 EN   96 (101)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=98.06  E-value=2.8e-05  Score=80.93  Aligned_cols=188  Identities=20%  Similarity=0.347  Sum_probs=118.3

Q ss_pred             cccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccCC-CCCCCcceeeecC--ceeEecc
Q psy1624           8 FRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETA-HPEGIGNLVLVPN--SVHYNEV   84 (346)
Q Consensus         8 ~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~~-~p~g~~~l~~~p~--~~Y~eK~   84 (346)
                      +.+.++|+.+|.++.        .|+.|+|.+..    +  ..+...+.|+|-+..+ .|.   .....++  +-|..|.
T Consensus       130 ~~s~~~C~~~C~~~~--------~C~~fTy~~~~----~--~~~~~~~~C~LK~s~~~~~~---~~~~~~g~vSG~s~k~  192 (625)
T 2f83_A          130 AKSAQECQERCTDDV--------HCHFFTYATRQ----F--PSLEHRNICLLKHTQTGTPT---RITKLDKVVSGFSLKS  192 (625)
T ss_dssp             CSCHHHHHHHHHTSS--------SCSEEEEECSS----C--SCSSSTTEEEEEECSSSSCS---EEEEEEEEEEEECCTT
T ss_pred             eCCHHHHHHhccCCC--------CCcEEEecCCc----c--cCCCCCceeEeccCcCCCCc---eeccccccccCCCCCC
Confidence            457899999999886        99999995420    0  0122368999987643 221   2222234  3455688


Q ss_pred             ccCccccccCCCCCceeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCC-------ceeEeccc
Q psy1624          85 CLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVA-------KTCSLSRF  157 (346)
Q Consensus        85 Cl~~~~~~~~C~~r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~-------~~C~Ls~~  157 (346)
                      |-...   ..|..     +.+++..+.|  .+...+.+.+.++|.++|....  .|+.+.|....       +.|.|-+.
T Consensus       193 c~~~~---~~c~~-----~~~~~~d~~g--~d~~~~~~~~~~~C~~~C~~~~--~C~~fT~~~~~~~~~~~~~~C~LK~s  260 (625)
T 2f83_A          193 CALSN---LACIR-----DIFPNTVFAD--SNIDSVMAPDAFVCGRICTHHP--GCLFFTFFSQEWPKESQRNLCLLKTS  260 (625)
T ss_dssp             TTCCC---SCCCC-----CCEEEEECCS--EEEEEEECSSHHHHHHHHHTCS--SCSEEEEECTTCSSGGGTTEEEEEEC
T ss_pred             CCCch---hhchh-----hcccCccccC--cceeeeecCCHHHHHHhccCCC--CCcEEEEecCCccCcccCCeEEeecC
Confidence            86543   45621     1245556666  4556677999999999999875  89999997654       89999876


Q ss_pred             CcccCCCCcccCCC--cceecccccCC-ccCCCCcceEEEecccccCCCceEEEecCCCHHHHHHHHhcCCCCcceee
Q psy1624         158 TRRSHPEMLEDDPN--ADYLENTCLNS-ERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFKGTDL  232 (346)
Q Consensus       158 dr~t~p~~f~~~~~--~dYfEN~C~~~-~~~C~~~~~F~r~~~~~L~g~~~vd~~~~~s~~eC~~~Cl~~~~F~CrS~  232 (346)
                      ...+ |...+...+  .-+--+.|... +..|.. ..|.   +..+.|. ++++....+.++|+++|....  .|.-|
T Consensus       261 ~~g~-~~~~~~~~~~~sG~~~~~c~~s~p~~c~~-~~~~---~~df~G~-~l~~~~~~~~~~Cq~~C~~~~--~C~~f  330 (625)
T 2f83_A          261 ESGL-PSTRIKKSKALSGFSLQSCRHSIPVFCHS-SFYH---DTDFLGE-ELDIVAAKSHEACQKLCTNAV--RCQFF  330 (625)
T ss_dssp             SSSS-CSCCEEEEEEEEEECCGGGSTTSCSSCCC-CCEE---TCEECCE-EEEEEEESSTTHHHHHHHHST--TCCEE
T ss_pred             CCCC-ccceeeccccccCCccccccCCCCCCChh-hcCC---CccccCC-ccceeecCCHHHHhhhccCCC--Cccce
Confidence            4433 222222222  22334667643 456763 2232   5566663 455433458999999999874  68755

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*

Probab=97.73  E-value=0.0001  Score=62.66  Aligned_cols=110  Identities=16%  Similarity=0.370  Sum_probs=78.6

Q ss_pred             CCcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccCCCCCCCcceeeecCceeEeccc
Q psy1624           6 PPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVC   85 (346)
Q Consensus         6 ~~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~~~p~g~~~l~~~p~~~Y~eK~C   85 (346)
                      +++.+.++|+.+|....        .|+.|+|++.             +..|+|-+..  |    .+...+|.+---|.|
T Consensus        26 ~~v~Sa~~Cq~~C~~~~--------~C~~FTf~~~-------------~k~C~LK~~~--~----~~~~~~g~vSGpk~C   78 (138)
T 2yil_A           26 VHVASAQDCMKECQALP--------TCSHFTYNKN-------------SKKCHLKAGA--P----EFYTYTGDMTGPRSC   78 (138)
T ss_dssp             EECSSHHHHHHHHHHST--------TCCEEEEETT-------------TCEEEEECSC--C----CEEECTTEEEEESCT
T ss_pred             cCCCCHHHHHHHccCCC--------CCCEEEEECC-------------CCEEEeccCc--h----heeecCCceecCCcC
Confidence            78999999999999887        8999999988             9999998642  1    255566766667777


Q ss_pred             cCccccccCCCCCceeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcc
Q psy1624          86 LSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRR  160 (346)
Q Consensus        86 l~~~~~~~~C~~r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~  160 (346)
                      -      ..|-...+   -++|..|++     ....+.+..+|..+|....  .|.=+.|..  +.|.|-..+..
T Consensus        79 ~------~~C~~~~v---dy~G~d~~~-----~~~s~~~a~~CQ~~C~~~~--~C~~fTf~~--~tC~lk~~da~  135 (138)
T 2yil_A           79 E------HNCSDACW---MDGNNPLAV-----WDYSGQPPALCWAACMGTP--GCDLYTFQG--MTCKLYSQTSS  135 (138)
T ss_dssp             T------CCCCSSEE---TTCCCCSEE-----EECTTCCTHHHHHHHHTST--TCCEEECGG--GEEEEECCCC-
T ss_pred             c------ccHHhcCC---CccCccccc-----cccccCCHHHHHHHhCCCC--CCcEEEEeC--CeeEEECCccc
Confidence            2      24521111   133333321     2223468999999999975  899999987  99998876653

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}

Probab=97.64  E-value=0.00033  Score=60.84  Aligned_cols=111  Identities=21%  Similarity=0.460  Sum_probs=79.8

Q ss_pred             CCCCcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccCCCCCCCcceeeecCceeEec
Q psy1624           4 TAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNE   83 (346)
Q Consensus         4 ~~~~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~~~p~g~~~l~~~p~~~Y~eK   83 (346)
                      +.-++.+.++|+.+|....        .|+.|+|++.             .+.|+|.+..  +    .++...|.+---|
T Consensus        26 ~~~~~~s~~~Cq~~C~~~p--------~C~~fTf~~~-------------~~~C~LK~s~--~----~~~~~~g~iSG~k   78 (161)
T 4a5v_A           26 EPVPDVSLEQCAAQCKAVD--------GCTHFTYNDD-------------SKMCHVKEGK--P----DLYDLTGGKTASR   78 (161)
T ss_dssp             CCBTTCCHHHHHHHHHHST--------TCSEEEEETT-------------TCCEEEECSS--C----CEEECTTEEEEES
T ss_pred             eeecCCCHHHHHHHCcCCC--------CCcEEEEECC-------------CCEEEEeCCC--C----CEEEcCCceeCCC
Confidence            3456788999999999976        8999999877             8999999754  1    2233333333333


Q ss_pred             cccCccccccCCCCCceeEEEecCceecCCccce-eEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccC
Q psy1624          84 VCLSSTRIERECPNRHYVFERHARKKLKLPAADV-KEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFT  158 (346)
Q Consensus        84 ~Cl~~~~~~~~C~~r~~~Fer~~~~~L~g~~~~~-~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~d  158 (346)
                                .|+.  |.+.  .+..+.|.. ++ ..+.+.+.++|.++|....  .|+.+.|+...+.|.|-...
T Consensus        79 ----------~C~~--~C~~--~~vD~~G~~-dl~~~~~~~s~~~Cq~~C~~~~--~C~~fTy~~~~~~C~LK~~~  137 (161)
T 4a5v_A           79 ----------SCDR--SCFE--QHVSYEGAP-DVMTAMVTSQSADCQAACAADP--SCEIFTYNEHDQKCTFKGRG  137 (161)
T ss_dssp             ----------CCCC--TTCE--ESEEECSSC-BSSCCCBCSCHHHHHHHHHHCT--TCCEEEEETTTTEEEEECTT
T ss_pred             ----------cCCc--chhh--CCCcccCch-hccccccCCCHHHHHHHcccCC--CCCEEEeeCCCCeeEeCCCC
Confidence                      4421  2233  566676731 22 3356899999999999975  99999999999999996554

>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A

Probab=97.48  E-value=4.4e-05  Score=61.48  Aligned_cols=75  Identities=20%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             ccceeeccccCCc----cceeecCCChhHHHHHHhccC--ceeecceeeeeecceEEeeecccCCC-ceeecCCCchhhh
Q psy1624         259 AFQRYRNSKLGGE----FHSEITGRSLSECLDECLRQA--SFQCRSAVYSERFRICRLSRFNQRDG-HRIVYDPDYDYYE  331 (346)
Q Consensus       259 ~f~r~~~~~l~~~----~~~~~~~~sl~~C~~~C~~~~--~~~Crs~~y~~~~~~c~L~~~~~~~~-~~~~~~~~~dy~~  331 (346)
                      .|++=.+..|.+.    .......+++++|-.+|.++.  .|.||+..|..+.+.|.|-.++++.. -....|.++|.||
T Consensus        16 ~y~kTeg~~L~~~~~~~~~~~~~~~s~eeCA~kC~~~~~~~F~CRAF~y~~k~q~C~ll~~ns~s~~v~~~~~~~~dLYE   95 (101)
T 3hms_A           16 EFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYE   95 (101)
T ss_dssp             GEEEEEEEEEEECCTTCCCEEEECSCHHHHHHHHHHCTTCSSCCCEEEEETTTTEEEEESCCTTSTTEEEEEEEEEEEEE
T ss_pred             HhhhcCCeEEeccCCCccceeeccCCHHHHHHHHHhccCCCcceeeeEEecCCCcEEECCCcCCCchheeeccCceeeee
Confidence            3444445555552    234555679999999999997  69999999999999999999999994 4556667889998


Q ss_pred             hc
Q psy1624         332 NL  333 (346)
Q Consensus       332 ~~  333 (346)
                      +-
T Consensus        96 KK   97 (101)
T 3hms_A           96 NK   97 (101)
T ss_dssp             EG
T ss_pred             cc
Confidence            74

>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*

Probab=97.38  E-value=0.00023  Score=66.58  Aligned_cols=77  Identities=22%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             eEEEecCceecCCcc--ceeEeecCCHHHHHHHhhccCC--CceeceeecCCCceeEecccCcccCCCCcccCCCcceec
Q psy1624         101 VFERHARKKLKLPAA--DVKEIMASNRTDCEDKCLNEFT--FVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLE  176 (346)
Q Consensus       101 ~Fer~~~~~L~g~~~--~~~~~~~~S~~~Cl~~Cl~e~~--f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfE  176 (346)
                      .|.+..|..|.....  ..+...+.|+++|..+|-.+.+  |.||++.|+..++.|.|-.+++.|.+-....+..++.||
T Consensus        16 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ca~~c~~~~~~~f~craf~~~~~~~~c~~~~~~~~s~~~~~~~~~~~~l~e   95 (264)
T 3sp8_A           16 EFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYE   95 (264)
T ss_dssp             GEEEETTEEEEESSTTCCCEEEECSCHHHHHHHHHSTTCSSSCCCEEEEETTTTEEEEESCCTTSTTEEEEECTTEEEEE
T ss_pred             hhhhccCeEEEeccccccceeeccCCHHHHHHHHhhccCCCccccceeeeccCCeEEEccccCCCCceEeecCccEEeee
Confidence            588999998876421  1256678999999999999976  999999999999999999999988764444444566665


Q ss_pred             c
Q psy1624         177 N  177 (346)
Q Consensus       177 N  177 (346)
                      +
T Consensus        96 k   96 (264)
T 3sp8_A           96 N   96 (264)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=95.85  E-value=0.01  Score=63.44  Aligned_cols=61  Identities=23%  Similarity=0.394  Sum_probs=54.3

Q ss_pred             eEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCC
Q psy1624         101 VFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHP  163 (346)
Q Consensus       101 ~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p  163 (346)
                      .|.+..|..|...  ..+...+.++++|..+|-.+..|.||++.|+...+.|.|-..++.|..
T Consensus         5 ~~~~~~~~~~~~~--~~~~~~~~~~~~ca~~c~~~~~~~cr~f~~~~~~~~c~~~~~~~~~~~   65 (791)
T 4dur_A            5 DYVNTQGASLFSV--TKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSI   65 (791)
T ss_dssp             TEEEEEEEEECCS--SEEEEECSSHHHHHHHHHHCSSSCCCEEEEETTTTEEEEESCCTTTSC
T ss_pred             hhhhcCCeEEecc--ChhhcccCCHHHHHHHhhccCCcceeeeeeeccCCceEECCCcCCCch
Confidence            3889999999763  567778999999999999998899999999999999999999988765

>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*

Probab=95.64  E-value=0.014  Score=45.00  Aligned_cols=53  Identities=15%  Similarity=0.422  Sum_probs=41.6

Q ss_pred             CcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccCCCCCCCcceeeecCceeEecccc
Q psy1624           7 PFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIGNLVLVPNSVHYNEVCL   86 (346)
Q Consensus         7 ~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~~~p~g~~~l~~~p~~~Y~eK~Cl   86 (346)
                      ...+|++|+.+|+.+.        .|++|+|+..             .+.|+|-+.      ...+...+|..--.++|-
T Consensus        28 ~~~sl~~Cq~aC~a~~--------~C~aFTyN~~-------------s~~CflKs~------~~~~~~~~Gavsg~~tC~   80 (82)
T 2ll3_A           28 RASSLSECRARCQAEK--------ECSHYTYNVK-------------SGLCYPKRG------KPQFYKYLGDMTGSRTCD   80 (82)
T ss_dssp             ECSSHHHHHHHHHHCT--------TEEEEEEETT-------------TTEEEEEES------SCCEEEEEEEEEECSCC-
T ss_pred             cCCCHHHHHHHhhccC--------CCCeEEeccC-------------CCceEcccC------CCceeecCCceEcccccC
Confidence            4568999999999987        9999999988             999999863      234556667666666663

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}

Probab=95.54  E-value=0.032  Score=48.18  Aligned_cols=114  Identities=18%  Similarity=0.318  Sum_probs=72.9

Q ss_pred             cCceecCCccce-eEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceecccccCCcc
Q psy1624         106 ARKKLKLPAADV-KEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSER  184 (346)
Q Consensus       106 ~~~~L~g~~~~~-~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN~C~~~~~  184 (346)
                      ++...+|-  ++ ..+.+.+.++|..+|....  .|+.+.|+...+.|.|-+..    |.. +...       +.+.-++
T Consensus        15 ~n~~~~g~--~i~~~~~~~s~~~Cq~~C~~~p--~C~~fTf~~~~~~C~LK~s~----~~~-~~~~-------g~iSG~k   78 (161)
T 4a5v_A           15 DNKGSRAP--TIGEPVPDVSLEQCAAQCKAVD--GCTHFTYNDDSKMCHVKEGK----PDL-YDLT-------GGKTASR   78 (161)
T ss_dssp             SSEEECSC--BCSCCBTTCCHHHHHHHHHHST--TCSEEEEETTTCCEEEECSS----CCE-EECT-------TEEEEES
T ss_pred             CCccccCC--CeeeeecCCCHHHHHHHCcCCC--CCcEEEEECCCCEEEEeCCC----CCE-EEcC-------CceeCCC
Confidence            34445552  33 5567999999999999975  89999999999999999754    221 1111       1111124


Q ss_pred             CCCCcceEEEecccccCCCceE-EEecCCCHHHHHHHHhcCCCCcceee-ecCCCCccc
Q psy1624         185 RCDGPVIFVKEENKRLGGPFEV-DIYANLSLLECQAQCLGAEKFKGTDL-YLTKGNDFP  241 (346)
Q Consensus       185 ~C~~~~~F~r~~~~~L~g~~~v-d~~~~~s~~eC~~~Cl~~~~F~CrS~-y~~~g~~~~  241 (346)
                      .|...+..   .+.-+.|...+ ......+.++|+++|....  .|+.| |+. ....|
T Consensus        79 ~C~~~C~~---~~vD~~G~~dl~~~~~~~s~~~Cq~~C~~~~--~C~~fTy~~-~~~~C  131 (161)
T 4a5v_A           79 SCDRSCFE---QHVSYEGAPDVMTAMVTSQSADCQAACAADP--SCEIFTYNE-HDQKC  131 (161)
T ss_dssp             CCCCTTCE---ESEEECSSCBSSCCCBCSCHHHHHHHHHHCT--TCCEEEEET-TTTEE
T ss_pred             cCCcchhh---CCCcccCchhccccccCCCHHHHHHHcccCC--CCCEEEeeC-CCCee
Confidence            45432222   35555553112 1134569999999999985  99999 764 34456

>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*

Probab=95.30  E-value=0.012  Score=55.05  Aligned_cols=75  Identities=20%  Similarity=0.438  Sum_probs=57.4

Q ss_pred             cccceeeccccCCccc----eeecCCChhHHHHHHhccCc--eeecceeeeeecceEEeeecccCCCc-eeecCCCchhh
Q psy1624         258 TAFQRYRNSKLGGEFH----SEITGRSLSECLDECLRQAS--FQCRSAVYSERFRICRLSRFNQRDGH-RIVYDPDYDYY  330 (346)
Q Consensus       258 ~~f~r~~~~~l~~~~~----~~~~~~sl~~C~~~C~~~~~--~~Crs~~y~~~~~~c~L~~~~~~~~~-~~~~~~~~dy~  330 (346)
                      ..|++..+..|.....    +.....++++|-.+|.++..  |.||+..|..+.+.|.+-.+++++.. ...-|..+|-|
T Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ca~~c~~~~~~~f~craf~~~~~~~~c~~~~~~~~s~~~~~~~~~~~~l~   94 (264)
T 3sp8_A           15 HEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLY   94 (264)
T ss_dssp             GGEEEETTEEEEESSTTCCCEEEECSCHHHHHHHHHSTTCSSSCCCEEEEETTTTEEEEESCCTTSTTEEEEECTTEEEE
T ss_pred             hhhhhccCeEEEeccccccceeeccCCHHHHHHHHhhccCCCccccceeeeccCCeEEEccccCCCCceEeecCccEEee
Confidence            4666666666665433    55656699999999999987  99999999999999999999999953 33344346666


Q ss_pred             hh
Q psy1624         331 EN  332 (346)
Q Consensus       331 ~~  332 (346)
                      |+
T Consensus        95 ek   96 (264)
T 3sp8_A           95 EN   96 (264)
T ss_dssp             EE
T ss_pred             ec
Confidence            65

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*

Probab=94.99  E-value=0.061  Score=45.40  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             EeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceecccccCCccCCCCcceEEEeccc
Q psy1624         119 EIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVKEENK  198 (346)
Q Consensus       119 ~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN~C~~~~~~C~~~~~F~r~~~~  198 (346)
                      +..+.|.++|+.+|....  .|+-+.|+...+.|.|-..    .|. +....++.       .-++.|.. +-|+.  +.
T Consensus        25 ~~~v~Sa~~Cq~~C~~~~--~C~~FTf~~~~k~C~LK~~----~~~-~~~~~g~v-------SGpk~C~~-~C~~~--~v   87 (138)
T 2yil_A           25 VVHVASAQDCMKECQALP--TCSHFTYNKNSKKCHLKAG----APE-FYTYTGDM-------TGPRSCEH-NCSDA--CW   87 (138)
T ss_dssp             EEECSSHHHHHHHHHHST--TCCEEEEETTTCEEEEECS----CCC-EEECTTEE-------EEESCTTC-CCCSS--EE
T ss_pred             ccCCCCHHHHHHHccCCC--CCCEEEEECCCCEEEeccC----chh-eeecCCce-------ecCCcCcc-cHHhc--CC
Confidence            467999999999999875  8999999999999999853    222 32222222       22344431 11221  22


Q ss_pred             ccCCCceEEE-ecCCCHHHHHHHHhcCCCCcceee-ecC
Q psy1624         199 RLGGPFEVDI-YANLSLLECQAQCLGAEKFKGTDL-YLT  235 (346)
Q Consensus       199 ~L~g~~~vd~-~~~~s~~eC~~~Cl~~~~F~CrS~-y~~  235 (346)
                      -..|..-+.. +...+..+|+++|....  .|.-| |..
T Consensus        88 dy~G~d~~~~~~s~~~a~~CQ~~C~~~~--~C~~fTf~~  124 (138)
T 2yil_A           88 MDGNNPLAVWDYSGQPPALCWAACMGTP--GCDLYTFQG  124 (138)
T ss_dssp             TTCCCCSEEEECTTCCTHHHHHHHHTST--TCCEEECGG
T ss_pred             CccCccccccccccCCHHHHHHHhCCCC--CCcEEEEeC
Confidence            3334221221 11257999999999774  89988 655

>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A

Probab=94.71  E-value=0.062  Score=47.49  Aligned_cols=59  Identities=20%  Similarity=0.472  Sum_probs=47.0

Q ss_pred             eEEEecCceecCCc--cceeEeecCCHHHHHHHhhccC--CCceeceeecCCCceeEecccCc
Q psy1624         101 VFERHARKKLKLPA--ADVKEIMASNRTDCEDKCLNEF--TFVCRSASYDSVAKTCSLSRFTR  159 (346)
Q Consensus       101 ~Fer~~~~~L~g~~--~~~~~~~~~S~~~Cl~~Cl~e~--~f~CrSa~y~~~~~~C~Ls~~dr  159 (346)
                      .|.+..+..|...+  ...++..+.++++|..+|..+.  .|.||++.|+...+.|.+--.+.
T Consensus        16 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~Ca~~C~~~~~~~~~C~af~y~~~~~~C~~~p~~~   78 (184)
T 2qj2_A           16 EFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNS   78 (184)
T ss_dssp             GEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCT
T ss_pred             HHhhhcCcEEeccCccccccccccCCHHHHHHHHHhccCCcceeecceEeccCCeEEEcCCcC
Confidence            58899999887522  2344557899999999999984  69999999999999999854443

>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*

Probab=90.12  E-value=0.26  Score=37.92  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             eEeecCCHHHHHHHhhccCCCceeceeecCCCceeEeccc
Q psy1624         118 KEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRF  157 (346)
Q Consensus       118 ~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~  157 (346)
                      ..+.+.++++|..+|+.+.  .|+.+.|+...+.|+|-..
T Consensus        25 ~~~~~~sl~~Cq~aC~a~~--~C~aFTyN~~s~~CflKs~   62 (82)
T 2ll3_A           25 EVKRASSLSECRARCQAEK--ECSHYTYNVKSGLCYPKRG   62 (82)
T ss_dssp             SCEECSSHHHHHHHHHHCT--TEEEEEEETTTTEEEEEES
T ss_pred             ccccCCCHHHHHHHhhccC--CCCeEEeccCCCceEcccC
Confidence            4557899999999999875  8999999999999998753

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=89.84  E-value=0.15  Score=54.37  Aligned_cols=73  Identities=19%  Similarity=0.389  Sum_probs=54.7

Q ss_pred             ccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCCCceeecCCCchhhhh
Q psy1624         259 AFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYEN  332 (346)
Q Consensus       259 ~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~~~~~~~~~~~dy~~~  332 (346)
                      .|++=.+..|....-.....+++++|-.+|.++..|.||+..|..+.+.|.|-.++++.. .+.-..++|-||+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~ca~~c~~~~~~~cr~f~~~~~~~~c~~~~~~~~~~-~~~~~~~~~l~~~   77 (791)
T 4dur_A            5 DYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSS-IIIRMRDVVLFEK   77 (791)
T ss_dssp             TEEEEEEEEECCSSEEEEECSSHHHHHHHHHHCSSSCCCEEEEETTTTEEEEESCCTTTS-CEEEEEEEEEEEE
T ss_pred             hhhhcCCeEEeccChhhcccCCHHHHHHHhhccCCcceeeeeeeccCCceEECCCcCCCc-hhhccccccchhc
Confidence            344444555666545666667999999999999889999999999999999999999985 3322234555554

>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A

Probab=88.79  E-value=0.34  Score=42.78  Aligned_cols=60  Identities=18%  Similarity=0.381  Sum_probs=44.9

Q ss_pred             cccceeeccccCCc-c---ceeecCCChhHHHHHHhccC--ceeecceeeeeecceEEeeecccCC
Q psy1624         258 TAFQRYRNSKLGGE-F---HSEITGRSLSECLDECLRQA--SFQCRSAVYSERFRICRLSRFNQRD  317 (346)
Q Consensus       258 ~~f~r~~~~~l~~~-~---~~~~~~~sl~~C~~~C~~~~--~~~Crs~~y~~~~~~c~L~~~~~~~  317 (346)
                      -.|++-.+..|... +   -......++++|-.+|.++.  +|.||+..|..+.+.|.+-.++...
T Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~Ca~~C~~~~~~~~~C~af~y~~~~~~C~~~p~~~~s   80 (184)
T 2qj2_A           15 HEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMS   80 (184)
T ss_dssp             GGEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCTTS
T ss_pred             HHHhhhcCcEEeccCccccccccccCCHHHHHHHHHhccCCcceeecceEeccCCeEEEcCCcCCC
Confidence            46666666666652 2   12223358999999999995  6999999999999999987777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d2qj2a1	91	g.10.1.1 (A:36-126) Hepatocyte growth factor {Huma	5e-13
d2qj2a1	91	g.10.1.1 (A:36-126) Hepatocyte growth factor {Huma	5e-11

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 113 PAADVKEIMASNRTDCEDKCLN--EFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDP 170
           PA  +K    +    C ++C       F C++  +D   K C    F   S     E   
Sbjct: 20  PALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGH 79

Query: 171 NADYLEN 177
             D  EN
Sbjct: 80  EFDLYEN 86

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 5e-11
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 260 FQRYRNSKL----GGEFHSEITGRSLSECLDECLR--QASFQCRSAVYSERFRICRLSRF 313
           F++   + L               +  +C + C R     F C++ V+ +  + C    F
Sbjct: 7   FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 66

Query: 314 NQR-DGHRIVYDPDYDYYEN 332
           N    G +  +  ++D YEN
Sbjct: 67  NSMSSGVKKEFGHEFDLYEN 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2qj2a1	91	Hepatocyte growth factor {Human (Homo sapiens) [Ta	99.15
d2qj2a1	91	Hepatocyte growth factor {Human (Homo sapiens) [Ta	98.77

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.2e-11  Score=95.03  Aligned_cols=78  Identities=22%  Similarity=0.396  Sum_probs=67.2

Q ss_pred             eEEEecCceecCCcc--ceeEeecCCHHHHHHHhhcc--CCCceeceeecCCCceeEecccCcccCCCCcccCCCcceec
Q psy1624         101 VFERHARKKLKLPAA--DVKEIMASNRTDCEDKCLNE--FTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLE  176 (346)
Q Consensus       101 ~Fer~~~~~L~g~~~--~~~~~~~~S~~~Cl~~Cl~e--~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfE  176 (346)
                      .|.+..|..|.....  ..++..+.|+++|..+|+.+  ..|.|||++|+...+.|.|+.+++.|.|-.+..+++.||||
T Consensus         6 dy~kt~~~~L~~~~~~~~~~~~~~~s~eeCA~rC~~~~~~~f~CrSF~y~~~~~~C~Ls~~n~~t~~~~l~~~~~~DyYE   85 (91)
T d2qj2a1           6 EFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYE   85 (91)
T ss_dssp             GEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCTTSTTEEEEECTTEEEEE
T ss_pred             hhhhcCCceEeccCccccccccccCCHHHHHHHHHccCCCCceEEeEEEECCCCeEEEccccCCCCCeeeecCCCccccc
Confidence            489999999987432  22445688999999999984  46999999999999999999999999998888899999999


Q ss_pred             cc
Q psy1624         177 NT  178 (346)
Q Consensus       177 N~  178 (346)
                      +.
T Consensus        86 ~k   87 (91)
T d2qj2a1          86 NK   87 (91)
T ss_dssp             EG
T ss_pred             cc
Confidence            85

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.8e-09  Score=83.88  Aligned_cols=76  Identities=21%  Similarity=0.444  Sum_probs=62.5

Q ss_pred             cccceeeccccCCccc----eeecCCChhHHHHHHhcc--CceeecceeeeeecceEEeeecccCC-CceeecCCCchhh
Q psy1624         258 TAFQRYRNSKLGGEFH----SEITGRSLSECLDECLRQ--ASFQCRSAVYSERFRICRLSRFNQRD-GHRIVYDPDYDYY  330 (346)
Q Consensus       258 ~~f~r~~~~~l~~~~~----~~~~~~sl~~C~~~C~~~--~~~~Crs~~y~~~~~~c~L~~~~~~~-~~~~~~~~~~dy~  330 (346)
                      ..|++..+..|.+.+.    +.....++++|..+|+++  ++|.|||++|....+.|.|+++++.+ |..+..+|.+|||
T Consensus         5 ~dy~kt~~~~L~~~~~~~~~~~~~~~s~eeCA~rC~~~~~~~f~CrSF~y~~~~~~C~Ls~~n~~t~~~~l~~~~~~DyY   84 (91)
T d2qj2a1           5 HEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLY   84 (91)
T ss_dssp             GGEEEETTEEEEECSTTCCCEEEECSCHHHHHHHHHTTTTCSSCCCEEEEETTTTEEEEESSCTTSTTEEEEECTTEEEE
T ss_pred             HhhhhcCCceEeccCccccccccccCCHHHHHHHHHccCCCCceEEeEEEECCCCeEEEccccCCCCCeeeecCCCcccc
Confidence            4677777777776422    333345999999999985  46999999999999999999999998 6678899999999


Q ss_pred             hhc
Q psy1624         331 ENL  333 (346)
Q Consensus       331 ~~~  333 (346)
                      |+-
T Consensus        85 E~k   87 (91)
T d2qj2a1          85 ENK   87 (91)
T ss_dssp             EEG
T ss_pred             ccc
Confidence            985