Psyllid ID: psy16250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
MNSSSPKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQESTYLARYPSENDKEKPGSLDD
ccccccccccccEEEEEEcccHHcHHHHHccHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHcccccccHHHccccccccccHHHHHHHHcccccccEEEEEEcccccccccccccEEEEEccccccEEEEEccHHHHHHHHHHcccccccccccccEEEEccccccccccHHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccccEEEEEEEEEEEcccccccccccccccccccccHHHHHHHccccccEEEEEccccccccEEEccccccEEEEEccccccHHHHHHHccccEEEEcccccccHHHHHHHcccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHccccEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccccccccHHcEEEEEEccccccccHHHccHHHHHHHcccccccccEEEEEEcccHHHcccHHHHHHHHHccccccEEEEEcccccccccccccccHHHcccccEEEEEccccccccccccccEEEEEccccccEEEEEccHHHHHHHHHHccccccccHHHHHHEEEHccccccHccHHHHHHHcccccccccEEEEccHHHHHHHHHHHHHccccEEEEEEEccEEEEcccEEEEEEcccccccccHHHHHHHHHHcccccccEcccccEEcccccccccccccEEEEEccccccHHHHHHHccccEEEEEccccccHHHHHHHHcccHHHHHHHHHHHHcccEEEEHcccHHHHHHHHHHHHHccccEEHHcccEEEccccccccccccHHHHccccccccccHHHHHcccccEHEEcccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
mnssspkvtecssvtvldcpsedyldsllgesifsqhqscamnedDKAALVAhfsphhimshprykefmskfpsttqhlvlnesnecqgstavhKIQCKLnildkeifpmlsdsgfplldkgkqvlairgpgpdtcilldcgegtYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSrvkpeckltllAPRQIITWLSVYAARFESVghlyrlvplslfntkgliegteqhgqnrpaldpdTVQILSSLGlesmttclvrhcpnafgVTMVTKsghkitysgdtmpcdalvsigknsdlliHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSqryaklprlnkdlsenvgiafdnmrfpekkkKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKkislanlpklklFYPALKAMFAEYQDEIENRAIRRNLKQESTYlarypsendkekpgsldd
mnssspkvtecssvtvlDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEqhgqnrpaldPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSqryaklprlnkdlsenvgiafdnmrfpekkkkkkkkkkkrkkkkkkkkkkvnnsiqissrpeicrEFDSKkislanlpkLKLFYPALKAMFAEYQDEIENRAIRRNLKQEstylarypsendkekpgsldd
MNSSSPKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEkkkkkkkkkkkrkkkkkkkkkkVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQESTYLARYPSENDKEKPGSLDD
*************VTVLDCPSEDYLDSLLGESIFSQHQSCAM****KAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEG*************DTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEA*************MHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAF******************************************CREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAI****************************
*********ECSSVTVLDCPSEDYLDSLLGESIF**********DDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLN******************NILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEK******************************RPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQ************************************
*************VTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFP****************************QISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQESTYLARYP*************
**SSSPKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQE**YL*****************
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MNSSSPKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPExxxxxxxxxxxxxxxxxxxxxxxxxxIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQESTYLARYPSENDKEKPGSLDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
Q8MKW7766 Ribonuclease Z, mitochond yes N/A 0.552 0.349 0.433 3e-69
Q8HY87826 Zinc phosphodiesterase EL N/A N/A 0.492 0.289 0.488 8e-64
Q9BQ52826 Zinc phosphodiesterase EL yes N/A 0.492 0.289 0.5 1e-63
Q9GL72826 Zinc phosphodiesterase EL yes N/A 0.492 0.289 0.492 3e-63
Q9GL73826 Zinc phosphodiesterase EL N/A N/A 0.492 0.289 0.492 1e-62
Q8CGS5827 Zinc phosphodiesterase EL yes N/A 0.569 0.333 0.394 3e-61
Q80Y81831 Zinc phosphodiesterase EL yes N/A 0.492 0.287 0.468 6e-61
Q10155809 Ribonuclease Z 1 OS=Schiz yes N/A 0.546 0.327 0.354 1e-39
O44476833 Ribonuclease Z OS=Caenorh yes N/A 0.505 0.294 0.373 2e-36
P36159838 Ribonuclease Z OS=Sacchar yes N/A 0.496 0.287 0.333 2e-32
>sp|Q8MKW7|RNZ_DROME Ribonuclease Z, mitochondrial OS=Drosophila melanogaster GN=JhI-1 PE=1 SV=2 Back     alignment and function desciption
 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/339 (43%), Positives = 191/339 (56%), Gaps = 71/339 (20%)

Query: 134 DTCILLDCGEGTYSQLVRLYGSAVDTL-LSQLSAVYISHLHADHHLGLFSVIKAWSRVKP 192
           D  +LLDCGEGTY Q+VRLYG     L L QL A+Y+SHLHADHH+GL  +++   ++KP
Sbjct: 483 DAYVLLDCGEGTYGQIVRLYGHEKGQLILRQLQAIYVSHLHADHHIGLIGLLRERRQLKP 542

Query: 193 ECK-LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDP 251
               L LLAPRQI  WL  Y  + E+V   Y LV                 G       P
Sbjct: 543 RADPLILLAPRQIEPWLEFYNRQIETVEDAYTLV-----------------GNGELLASP 585

Query: 252 DTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGH-----KITYSGDTMPCDALVSIGK 306
            + + +  LG+ S++TCLVRHCPN+FG+++   + H     KITYSGDTMPC  L+ +G+
Sbjct: 586 LSGEQVERLGITSISTCLVRHCPNSFGISLTLAAKHNSEPVKITYSGDTMPCQDLIDLGR 645

Query: 307 NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKD 366
           +S +LIHEAT ED+LE+EA LK HSTVSQAI+ GR M A+  +LTHFSQRYAK PRL  D
Sbjct: 646 DSTVLIHEATMEDDLEEEARLKTHSTVSQAIQQGRNMNARHTILTHFSQRYAKCPRLPSD 705

Query: 367 LS-ENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKK 425
              + V IAFDNM                                              +
Sbjct: 706 EDMQRVAIAFDNM----------------------------------------------E 719

Query: 426 ISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQE 464
           +++ +L      YPAL AM+AEY +E+E RA++R LKQE
Sbjct: 720 VTIEDLQHYHKLYPALFAMYAEYTEELEQRAVKRELKQE 758
Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity of nuclear and mitochondrial pre-tRNA. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. May participate in tRNA processing in the developing embryo.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 1EC: 1
>sp|Q8HY87|RNZ2_MACFA Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis GN=ELAC2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BQ52|RNZ2_HUMAN Zinc phosphodiesterase ELAC protein 2 OS=Homo sapiens GN=ELAC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9GL72|RNZ2_PANTR Zinc phosphodiesterase ELAC protein 2 OS=Pan troglodytes GN=ELAC2 PE=2 SV=1 Back     alignment and function description
>sp|Q9GL73|RNZ2_GORGO Zinc phosphodiesterase ELAC protein 2 OS=Gorilla gorilla gorilla GN=ELAC2 PE=2 SV=1 Back     alignment and function description
>sp|Q8CGS5|RNZ2_RAT Zinc phosphodiesterase ELAC protein 2 OS=Rattus norvegicus GN=Elac2 PE=2 SV=1 Back     alignment and function description
>sp|Q80Y81|RNZ2_MOUSE Zinc phosphodiesterase ELAC protein 2 OS=Mus musculus GN=Elac2 PE=1 SV=1 Back     alignment and function description
>sp|Q10155|RNZ1_SCHPO Ribonuclease Z 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trz1 PE=3 SV=1 Back     alignment and function description
>sp|O44476|RNZ_CAEEL Ribonuclease Z OS=Caenorhabditis elegans GN=hoe-1 PE=2 SV=2 Back     alignment and function description
>sp|P36159|RNZ_YEAST Ribonuclease Z OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRZ1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
189240495 827 PREDICTED: similar to AGAP009743-PA [Tri 0.560 0.328 0.460 4e-75
170041665 784 ribonuclease Z, mitochondrial [Culex qui 0.608 0.376 0.428 1e-68
9802011 789 juvenile hormone-inducible protein 1 [Dr 0.552 0.339 0.433 1e-67
42559651 766 RecName: Full=Ribonuclease Z, mitochondr 0.552 0.349 0.433 2e-67
21430922 766 SD27051p [Drosophila melanogaster] 0.552 0.349 0.433 2e-67
125808678 763 GA17222 [Drosophila pseudoobscura pseudo 0.546 0.347 0.440 3e-67
194753954 768 GF12130 [Drosophila ananassae] gi|190620 0.552 0.348 0.427 5e-67
24652403 766 juvenile hormone-inducible protein 1 [Dr 0.552 0.349 0.430 5e-67
195582146 743 GD25997 [Drosophila simulans] gi|1941928 0.552 0.360 0.430 6e-67
195442272 745 GK18015 [Drosophila willistoni] gi|19416 0.546 0.355 0.425 1e-66
>gi|189240495|ref|XP_968692.2| PREDICTED: similar to AGAP009743-PA [Tribolium castaneum] gi|270012571|gb|EFA09019.1| hypothetical protein TcasGA2_TC006728 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/339 (46%), Positives = 198/339 (58%), Gaps = 67/339 (19%)

Query: 134 DTCILLDCGEGTYSQLVRLYGS-AVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRV-- 190
           +T I++DCGEGT  Q++R YG    +  L+++ AVYISHLHADHHLGL  V++   R   
Sbjct: 539 NTSIVIDCGEGTVGQIIRFYGQDKANAELAKIRAVYISHLHADHHLGLIGVLQGRQRAMQ 598

Query: 191 ---KPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLS--LFNTKGLIEGTEQHGQN 245
              K    L LLAP+QI+ WL+ Y   FE +   + LVP     FN   L +  E+    
Sbjct: 599 KLEKGAQPLFLLAPKQIMWWLNFYDRCFEKISEEFVLVPNGELFFNNHELDQLLEK---- 654

Query: 246 RPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIG 305
                    Q+L  L +  ++TCLV+HCPNAFGV+ V ++G+KITYSGDTMP + LV +G
Sbjct: 655 ---------QLLEGLQMRDISTCLVKHCPNAFGVSFVHQNGYKITYSGDTMPSENLVQLG 705

Query: 306 KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNK 365
           K SDLLIHEAT EDEL  EA +KMHST SQAI IGR+M AK+ LLTHFSQRYAKLPR N+
Sbjct: 706 KTSDLLIHEATMEDELAAEAVIKMHSTTSQAIEIGRQMEAKYTLLTHFSQRYAKLPRFNE 765

Query: 366 DLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKK 425
           + S+NVGIAFDNMR                                              
Sbjct: 766 NFSDNVGIAFDNMR---------------------------------------------- 779

Query: 426 ISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQE 464
           + L  LP + L YPALK MF EY +E+E +A +R +K E
Sbjct: 780 VKLDELPLIPLLYPALKLMFVEYYEEMEQKAAKRQMKIE 818

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170041665|ref|XP_001848575.1| ribonuclease Z, mitochondrial [Culex quinquefasciatus] gi|167865235|gb|EDS28618.1| ribonuclease Z, mitochondrial [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|9802011|gb|AAF99588.1|AF215894_1 juvenile hormone-inducible protein 1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|42559651|sp|Q8MKW7.2|RNZ_DROME RecName: Full=Ribonuclease Z, mitochondrial; Short=RNase Z; AltName: Full=Juvenile hormone-inducible protein 1; AltName: Full=dRNAse Z; AltName: Full=tRNA 3 endonuclease; Short=DmeZ; AltName: Full=tRNase Z; Flags: Precursor Back     alignment and taxonomy information
>gi|21430922|gb|AAM51139.1| SD27051p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|125808678|ref|XP_001360827.1| GA17222 [Drosophila pseudoobscura pseudoobscura] gi|54635999|gb|EAL25402.1| GA17222 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194753954|ref|XP_001959270.1| GF12130 [Drosophila ananassae] gi|190620568|gb|EDV36092.1| GF12130 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|24652403|ref|NP_724916.1| juvenile hormone-inducible protein 1 [Drosophila melanogaster] gi|21627583|gb|AAM68783.1| juvenile hormone-inducible protein 1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195582146|ref|XP_002080889.1| GD25997 [Drosophila simulans] gi|194192898|gb|EDX06474.1| GD25997 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195442272|ref|XP_002068882.1| GK18015 [Drosophila willistoni] gi|194164967|gb|EDW79868.1| GK18015 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
FB|FBgn0028426766 JhI-1 "Juvenile hormone-induci 0.470 0.297 0.505 2.8e-84
UNIPROTKB|E1BDK7777 ELAC2 "Uncharacterized protein 0.492 0.307 0.496 3.2e-83
UNIPROTKB|G5E9D5807 ELAC2 "Zinc phosphodiesterase 0.544 0.327 0.475 1.4e-82
UNIPROTKB|Q9BQ52826 ELAC2 "Zinc phosphodiesterase 0.544 0.319 0.475 1.4e-82
UNIPROTKB|E2RHF6821 ELAC2 "Uncharacterized protein 0.544 0.321 0.475 2.5e-81
UNIPROTKB|F1P100824 ELAC2 "Uncharacterized protein 0.484 0.285 0.479 5.6e-79
RGD|628882827 Elac2 "elaC homolog 2 (E. coli 0.492 0.288 0.476 4.3e-78
UNIPROTKB|G3V6F5827 Elac2 "Zinc phosphodiesterase 0.492 0.288 0.476 4.3e-78
MGI|MGI:1890496831 Elac2 "elaC homolog 2 (E. coli 0.492 0.287 0.480 5.5e-78
ZFIN|ZDB-GENE-041111-227865 elac2 "elaC homolog 2 (E. coli 0.480 0.269 0.472 7.7e-78
FB|FBgn0028426 JhI-1 "Juvenile hormone-inducible protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 594 (214.2 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
 Identities = 128/253 (50%), Positives = 162/253 (64%)

Query:   134 DTCILLDCGEGTYSQLVRLYGSAVDTL-LSQLSAVYISHLHADHHLGLFSVIKAWSRVKP 192
             D  +LLDCGEGTY Q+VRLYG     L L QL A+Y+SHLHADHH+GL  +++   ++KP
Sbjct:   483 DAYVLLDCGEGTYGQIVRLYGHEKGQLILRQLQAIYVSHLHADHHIGLIGLLRERRQLKP 542

Query:   193 ECK-LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDP 251
                 L LLAPRQI  WL  Y  + E+V   Y LV                 G       P
Sbjct:   543 RADPLILLAPRQIEPWLEFYNRQIETVEDAYTLV-----------------GNGELLASP 585

Query:   252 DTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGH-----KITYSGDTMPCDALVSIGK 306
              + + +  LG+ S++TCLVRHCPN+FG+++   + H     KITYSGDTMPC  L+ +G+
Sbjct:   586 LSGEQVERLGITSISTCLVRHCPNSFGISLTLAAKHNSEPVKITYSGDTMPCQDLIDLGR 645

Query:   307 NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKD 366
             +S +LIHEAT ED+LE+EA LK HSTVSQAI+ GR M A+  +LTHFSQRYAK PRL  D
Sbjct:   646 DSTVLIHEATMEDDLEEEARLKTHSTVSQAIQQGRNMNARHTILTHFSQRYAKCPRLPSD 705

Query:   367 LS-ENVGIAFDNM 378
                + V IAFDNM
Sbjct:   706 EDMQRVAIAFDNM 718
GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IMP
GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IMP
GO:0005739 "mitochondrion" evidence=NAS
GO:0042779 "tRNA 3'-trailer cleavage" evidence=IDA
GO:0005634 "nucleus" evidence=NAS
GO:0001558 "regulation of cell growth" evidence=IMP
GO:0042780 "tRNA 3'-end processing" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
GO:0046331 "lateral inhibition" evidence=IMP
UNIPROTKB|E1BDK7 ELAC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G5E9D5 ELAC2 "Zinc phosphodiesterase ELAC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQ52 ELAC2 "Zinc phosphodiesterase ELAC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHF6 ELAC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P100 ELAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|628882 Elac2 "elaC homolog 2 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6F5 Elac2 "Zinc phosphodiesterase ELAC protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890496 Elac2 "elaC homolog 2 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-227 elac2 "elaC homolog 2 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.110.737
3rd Layer3.1.260.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
COG1234292 COG1234, ElaC, Metal-dependent hydrolases of the b 2e-47
PRK00055270 PRK00055, PRK00055, ribonuclease Z; Reviewed 4e-35
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 3e-30
TIGR02651299 TIGR02651, RNase_Z, ribonuclease Z 3e-26
TIGR02649303 TIGR02649, true_RNase_BN, ribonuclease BN 4e-14
PRK02126334 PRK02126, PRK02126, ribonuclease Z; Provisional 3e-09
TIGR02651299 TIGR02651, RNase_Z, ribonuclease Z 5e-08
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 3e-05
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 1e-04
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 2e-04
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 6e-04
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 7e-04
pfam09420173 pfam09420, Nop16, Ribosome biogenesis protein Nop1 7e-04
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 8e-04
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.001
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.001
pfam09831177 pfam09831, DUF2058, Uncharacterized protein conser 0.001
pfam03343 603 pfam03343, SART-1, SART-1 family 0.002
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 0.002
pfam07771120 pfam07771, TSGP1, Tick salivary peptide group 1 0.002
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.003
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.003
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 0.003
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 0.003
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 0.004
pfam10278178 pfam10278, Med19, Mediator of RNA pol II transcrip 0.004
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including 0.004
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information 
 Score =  165 bits (420), Expect = 2e-47
 Identities = 83/289 (28%), Positives = 117/289 (40%), Gaps = 30/289 (10%)

Query: 114 SGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLH 173
              P  D+    + +R  G     L DCGEGT  QL+R           ++ A++I+HLH
Sbjct: 11  GAVPTKDRNVSSILLRLEGEK--FLFDCGEGTQHQLLRAGLP-----PRKIDAIFITHLH 63

Query: 174 ADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITW------LSVYAARFESVGHLYRLVPL 227
            DH  GL  ++ + S       L +  P  I  +      LS     +E +GH       
Sbjct: 64  GDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAF 123

Query: 228 SLFNTKGLIEGTEQHG----QNRPALDPDTVQILSSLGLESMTTCLVRHCPN------AF 277
                  L  G    G    +       D  ++        +T     H         A 
Sbjct: 124 -EVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPAD 182

Query: 278 GVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAI 337
            +    + G  + YSGDT PCD L+ + K +DLLIHEAT ED+LE  A    HST  +A 
Sbjct: 183 RIGE-PRKGKSVVYSGDTRPCDELIDLAKGADLLIHEATFEDDLEDLANEGGHSTAEEAA 241

Query: 338 RIGREMRAKFVLLTHFSQRYAK-LPRLNKDLSE----NVGIAFDNMRFP 381
            I +E   K ++LTHFS RY K    L K+          +A D + F 
Sbjct: 242 EIAKEAGVKKLILTHFSPRYPKDDEELLKEARAIFPGETIVARDGLVFE 290

Length = 292
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z Back     alignment and domain information
>gnl|CDD|131697 TIGR02649, true_RNase_BN, ribonuclease BN Back     alignment and domain information
>gnl|CDD|235006 PRK02126, PRK02126, ribonuclease Z; Provisional Back     alignment and domain information
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16 Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) Back     alignment and domain information
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1 Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19 Back     alignment and domain information
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
KOG2121|consensus746 100.0
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 100.0
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 100.0
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 100.0
PRK00055270 ribonuclease Z; Reviewed 100.0
PRK02113252 putative hydrolase; Provisional 99.97
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.97
PRK02126334 ribonuclease Z; Provisional 99.96
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.96
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.95
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.95
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.94
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.92
PRK00685228 metal-dependent hydrolase; Provisional 99.76
PRK04286298 hypothetical protein; Provisional 99.76
TIGR00649422 MG423 conserved hypothetical protein. Contains an 99.72
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.57
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.51
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.38
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.36
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.29
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 99.16
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.0
COG1782637 Predicted metal-dependent RNase, consists of a met 98.92
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 98.9
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.88
KOG1136|consensus 501 98.84
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.73
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 98.71
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.59
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.49
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.48
KOG1361|consensus481 98.4
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 98.37
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.3
KOG1137|consensus 668 98.28
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 98.22
PLN02469258 hydroxyacylglutathione hydrolase 98.21
PLN02398329 hydroxyacylglutathione hydrolase 98.2
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.08
PLN02962251 hydroxyacylglutathione hydrolase 98.03
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.0
KOG3798|consensus343 97.87
PRK11539755 ComEC family competence protein; Provisional 97.65
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 97.4
KOG0813|consensus265 97.22
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 97.02
PF1369163 Lactamase_B_4: tRNase Z endonuclease 97.02
KOG1135|consensus 764 96.88
KOG0814|consensus237 95.85
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 94.76
KOG3592|consensus 934 87.85
KOG2121|consensus 746 84.22
>KOG2121|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.1e-79  Score=646.06  Aligned_cols=395  Identities=42%  Similarity=0.669  Sum_probs=329.3

Q ss_pred             CCCCCCCeEEEEEcCChhhHHHhhcccchhhccccccCCCCceEEEEEecCCCccCChhHHHHHHhCCCCceEEecCCCC
Q psy16250          6 PKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESN   85 (485)
Q Consensus         6 ~~~~~g~~~~i~d~p~~~yl~~l~~~~~~~~~~~~~~~~~~~~~~v~h~~~~~v~~~~~y~~~~~~f~~~~~Hi~~~~~~   85 (485)
                      -|+.||+.|+|+|||++.||+.++++-....|.+..  . ..|.||+|++|.+|..+++|+.||.+|++.+||+++++++
T Consensus       261 gp~~~~~~f~il~cp~e~~l~~i~~~~~~~~y~~~~--~-~~V~civh~~p~~v~~~~~y~~~~~~f~s~~qH~~~~~~~  337 (746)
T KOG2121|consen  261 GPSRPGASFLILDCPDESYLNAILENIKKHKYSGLP--D-EPVACIVHITPASVYSSDRYQSWMEKFYSEAQHIILSEEN  337 (746)
T ss_pred             CCCCCccEEEEecCCcHHHHHHHHhccchhhhccCC--C-cceeEEEEEcccceeccHHHHhhHhhccchhhhhhhcccc
Confidence            378999999999999999999999987655555432  2 4599999999999999999999999999999999999886


Q ss_pred             cc-ccchhHHHHHHHhhcccccccCCCCCCCCCC-----------------CCCC-------------------------
Q psy16250         86 EC-QGSTAVHKIQCKLNILDKEIFPMLSDSGFPL-----------------LDKG-------------------------  122 (485)
Q Consensus        86 ~~-~~~~~~~~~~~~l~~~~~~~fp~~~~~~~~~-----------------l~p~-------------------------  122 (485)
                      .. ..+.+++++|++||.++|.+||++.....+.                 |||.                         
T Consensus       338 ~~~~~~~~~~~~~~~ln~l~p~~Fpl~~~f~~~~s~~~~~~~~~~~~~k~~Lrp~~g~d~~~~~~~pe~~~~~~~~~~~~  417 (746)
T KOG2121|consen  338 AAFPNLRASHRIQAQLNLLLPQVFPLLGSFDVKLSGLGIQIPSPSNLLKYVLRPEGGIDDEVLFDIPEEKSEELKQSPNK  417 (746)
T ss_pred             ccccccccHHHHHHhhcccCchhccCcccceeeccCCcccccCCcccceeEeeccCCCCcceeecCchhhhhhhccCcch
Confidence            54 4678899999999999999999985422110                 3332                         


Q ss_pred             --------------------------------------cceeeeeee----cCCceEEEeCCCCHHHHHHHHhC-Ccccc
Q psy16250        123 --------------------------------------KQVLAIRGP----GPDTCILLDCGEGTYSQLVRLYG-SAVDT  159 (485)
Q Consensus       123 --------------------------------------~k~RNvS~~----~~~~~ILlDcGegt~~qL~r~~G-~~~~~  159 (485)
                                                            +||||||++    ..+.+||+||||||++||.|+|| +.++.
T Consensus       418 ~~~~~~i~k~~~~~~~~P~~~e~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~  497 (746)
T KOG2121|consen  418 QKRSTKIQKYHLSGDHFPNFAEKKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDT  497 (746)
T ss_pred             hcchhhhhhhhccCCCCCCccccCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHH
Confidence                                                  399999999    46678999999999999999999 78888


Q ss_pred             cccCcCEEEeecCchhhhcChHHHHHHHhcc---CCCceeEEEcCccHHHHHHHHHHHHHhhcccccccc--ccccccCC
Q psy16250        160 LLSQLSAVYISHLHADHHLGLFSVIKAWSRV---KPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVP--LSLFNTKG  234 (485)
Q Consensus       160 ~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~---~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~--~~l~~~~~  234 (485)
                      .++++++|||||+|||||+|+++++.+|...   ....|+.|++|+++..||++|..+-.-....+..+.  ..++....
T Consensus       498 ~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s  577 (746)
T KOG2121|consen  498 ALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKS  577 (746)
T ss_pred             HHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccC
Confidence            9999999999999999999999999999875   256799999999999999998742111111111111  12221111


Q ss_pred             CccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEEEEECCCCCchhHHHhhcCCChhhhc
Q psy16250        235 LIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHE  314 (485)
Q Consensus       235 ~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhE  314 (485)
                      .+      +    ........++..+|+.+|.+++|.||+++||..|++..||||+||||||||+.++++++||||||||
T Consensus       578 ~~------s----~~~~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~g~datlLIHE  647 (746)
T KOG2121|consen  578 PD------S----VPERLLSYLLRELGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKAGKDATLLIHE  647 (746)
T ss_pred             cc------c----cchhhhhHHHHhcCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhhccCCceEEee
Confidence            00      0    0112345678889999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCChHHHhhhcCcceeeeccCcEeeccchhhhhHHHHH
Q psy16250        315 ATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKR  394 (485)
Q Consensus       315 ATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~~~l~~~~~~~v~iA~Dgm~i~l~~~~~~~~~~~~  394 (485)
                      |||+|++.|+|..++|||++||+.+++.|||+++|||||||||++.| +..+          +..               
T Consensus       648 AT~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~p-l~~d----------~~~---------------  701 (746)
T KOG2121|consen  648 ATLEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVP-LPSD----------GEM---------------  701 (746)
T ss_pred             hhhchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCC-CCCc----------ccc---------------
Confidence            99999999999999999999999999999999999999999999987 4321          111               


Q ss_pred             HHHHHHhhhhccccccccCCCceeeeccccccccCChhhhhhhHHHHHHhHHhhHHHHHHHHHHH
Q psy16250        395 KKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRR  459 (485)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  459 (485)
                                          ..+|+|||.|.|.++|++.++++.|+++.+|+++.+|+|++++||
T Consensus       702 --------------------~~~~~afd~m~v~~~D~~~~~~~~p~l~~~f~e~~~e~E~~~~~~  746 (746)
T KOG2121|consen  702 --------------------DPVCVAFDKMAVSVADLQEVPKFEPYLKALFAEEKEEEEERDEKR  746 (746)
T ss_pred             --------------------chHHHhhhcceeeccccchhhhhhhHHHHHhhhhhhhhhhhhccC
Confidence                                236788888889999999999999999999999999999998875

>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>KOG1136|consensus Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>KOG1361|consensus Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG1137|consensus Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>KOG3798|consensus Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0813|consensus Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>KOG1135|consensus Back     alignment and domain information
>KOG0814|consensus Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3592|consensus Back     alignment and domain information
>KOG2121|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
4gcw_A320 Crystal Structure Of Rnase Z In Complex With Precur 8e-13
2fk6_A320 Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Lengt 1e-11
1y44_A320 Crystal Structure Of Rnase Z Length = 320 1e-11
2cbn_A306 Crystal Structure Of Zipd From Escherichia Coli Len 5e-09
3zwf_A368 Crystal Structure Of Human Trnase Z, Short Form (El 3e-06
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor Trna(Thr) Length = 320 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 138 LLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLT 197
           L DCGE T  Q++            ++  ++I+H+H DH  GL  ++ + S    E +LT
Sbjct: 35  LFDCGEATQHQMLH-----TTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELT 89
Query: 198 LLAPRQIITWLSVYAARFESVGHLYRLVPLSL---------------FNTKGLIEGTEQH 242
           +  P+ I  ++    A    V   +   PL++                    +I G E  
Sbjct: 90  VYGPKGIKAFIETSLA----VTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAF 145
Query: 243 G-----QNRP-ALDPDTVQ--------ILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHK 288
           G     ++ P +L  D ++        +   +      T       N        K G  
Sbjct: 146 GYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRS 205
Query: 289 ITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFV 348
           + +SGDT   D L  + ++ D+++HEAT   E  K A    HST  QA    +E RAK +
Sbjct: 206 VVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQL 265
Query: 349 LLTHFSQRY 357
           +LTH S RY
Sbjct: 266 ILTHISARY 274
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Length = 320 Back     alignment and structure
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z Length = 320 Back     alignment and structure
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli Length = 306 Back     alignment and structure
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1). Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 1e-57
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 2e-55
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 1e-54
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 1e-39
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 3e-25
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 3e-11
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 5e-10
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 2e-09
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 4e-04
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
 Score =  190 bits (486), Expect = 1e-57
 Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 52/258 (20%)

Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW----- 187
               +L+DCG G  +QL +          S + AV +SH H DH   +  +  A      
Sbjct: 51  DGFRLLVDCGSGVLAQLQKYIT------PSDIDAVVLSHYHHDHVADIGVLQYARLITSA 104

Query: 188 --SRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQN 245
              ++     L +            ++   E         P                   
Sbjct: 105 TKGQLPE---LPIYGHTF--DENGFHSLTHEPHTKGIPYNPEETLQIGPF---------- 149

Query: 246 RPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIG 305
                             S++     H    F +  +T     + YS D+      +   
Sbjct: 150 ------------------SISFLKTVHPVTCFAMR-ITAGNDIVVYSADSSYIPEFIPFT 190

Query: 306 KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLN- 364
           K++DL I E        +EAA   H   ++   I ++   K +LLTH          +  
Sbjct: 191 KDADLFICECNMYA--HQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTE 248

Query: 365 --KDLSENVGIAFDNMRF 380
             +  S ++ +A     +
Sbjct: 249 AKQIFSGHITLAHSGYVW 266
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 100.0
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 100.0
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 100.0
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.97
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.97
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.97
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.96
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.96
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.79
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.79
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.75
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.74
2az4_A429 Hypothetical protein EF2904; structural genomics, 99.73
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.72
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.72
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.67
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.63
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.61
2i7t_A459 Cleavage and polyadenylation specificity factor 73 99.56
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.53
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.52
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.52
3af5_A651 Putative uncharacterized protein PH1404; archaeal 99.49
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.48
2xr1_A640 Cleavage and polyadenylation specificity factor 1 99.42
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.25
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.19
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.16
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.16
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.13
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.02
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 98.98
1ztc_A221 Hypothetical protein TM0894; structural genomics, 98.98
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 98.96
3esh_A280 Protein similar to metal-dependent hydrolase; stru 98.96
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 98.94
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 98.93
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 98.92
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 98.89
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 98.88
4efz_A298 Metallo-beta-lactamase family protein; structural 98.88
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 98.84
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 98.82
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.82
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 98.8
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.8
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.76
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 98.76
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.75
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.74
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 98.72
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.71
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 98.7
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 98.69
1xm8_A254 Glyoxalase II; structural genomics, protein struct 98.68
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.67
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 98.64
3h3e_A267 Uncharacterized protein TM1679; structural genomic 98.63
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 98.61
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 98.59
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 98.57
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 98.57
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.56
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.51
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.49
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.46
3r2u_A 466 Metallo-beta-lactamase family protein; structural 98.41
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.3
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.09
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.0
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 96.0
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
Probab=100.00  E-value=6.2e-35  Score=291.91  Aligned_cols=230  Identities=28%  Similarity=0.402  Sum_probs=177.7

Q ss_pred             ceeeeeee---c----CCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCcee
Q psy16250        124 QVLAIRGP---G----PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKL  196 (485)
Q Consensus       124 k~RNvS~~---~----~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL  196 (485)
                      ..||++|+   .    ++..||||||+|+..++.+ .|    ..+.+|++|||||.|+||++|++.++..+...++..++
T Consensus        16 ~~r~~~~~li~~~~~~~~~~iliD~G~~~~~~l~~-~~----~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~   90 (306)
T 2cbn_A           16 RTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLH-TA----FNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPL   90 (306)
T ss_dssp             SSCCBCEEEEECCCSSCCCEEEECCCTTHHHHHHT-SC----CCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCE
T ss_pred             CCCCCCEEEEEeecCCCCcEEEEECCHHHHHHHHH-hC----CCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCe
Confidence            57898888   4    7789999999999888776 44    34678999999999999999999998866544455689


Q ss_pred             EEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCc
Q psy16250        197 TLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNA  276 (485)
Q Consensus       197 ~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a  276 (485)
                      .||+|..+..+++...... .....+.   ..+....+        |           +.+ .+|..+|+++++.|+.++
T Consensus        91 ~i~~~~~~~~~l~~~~~~~-~~~~~~~---~~~~~~~~--------g-----------~~~-~~~~~~v~~~~~~H~~~~  146 (306)
T 2cbn_A           91 TIYGPQGIREFVETALRIS-GSWTDYP---LEIVEIGA--------G-----------EIL-DDGLRKVTAYPLEHPLEC  146 (306)
T ss_dssp             EEEESTTHHHHHHHHHHHT-TCCCSSC---EEEEECCS--------E-----------EEE-ECSSEEEEEEECBSSSCC
T ss_pred             EEEcCccHHHHHHHHHHhh-ccCCCce---EEEEEcCC--------C-----------cEe-ecCCEEEEEEEccCCCCc
Confidence            9999999988887543211 0000000   00000000        0           001 234459999999999999


Q ss_pred             cEEEEEEe-------------------------------------------------CCcEEEEECCCCCchhHHHhhcC
Q psy16250        277 FGVTMVTK-------------------------------------------------SGHKITYSGDTMPCDALVSIGKN  307 (485)
Q Consensus       277 ~G~~i~~~-------------------------------------------------~G~kIvYSGDT~p~~~l~~~~~~  307 (485)
                      +||+++..                                                 +|++|+|+|||++++.+.+++++
T Consensus       147 ~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~sgDt~~~~~~~~~~~~  226 (306)
T 2cbn_A          147 YGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKG  226 (306)
T ss_dssp             EEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCSTHHHHHTT
T ss_pred             cEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEEeCCCCCHHHHHHHhcC
Confidence            99999741                                                 57899999999999999999999


Q ss_pred             CChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCCh--HHHh---hhcCcceeeeccCcEeec
Q psy16250        308 SDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKL--PRLN---KDLSENVGIAFDNMRFPE  382 (485)
Q Consensus       308 aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~--~~l~---~~~~~~v~iA~Dgm~i~l  382 (485)
                      +|+|||||||.+++.+.+..++|+|++||+++++++++++++|||||+||++.  ..+.   +....++.+|+|||+|+|
T Consensus       227 ~D~li~E~t~~~~~~~~a~~~~H~t~~~a~~~a~~~~~~~lvl~H~s~~~~~~~~~~~~~e~~~~~~~~~~a~Dg~~~~~  306 (306)
T 2cbn_A          227 VDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDFTVFNV  306 (306)
T ss_dssp             CSEEEEECCBCGGGHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTCCHHHHHHHHHHHHTTCSCEEECCTTCEEEC
T ss_pred             CCEEEEECcCChhhHhHHhhcCCCCHHHHHHHHHHcCCcEEEEEeecCCCCCCchhHHHHHHHHhCCCcEEcccccEeeC
Confidence            99999999999988877889999999999999999999999999999999853  2221   222347999999999864
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 485
d1y44a1307 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci 1e-28
d2cbna1305 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch 2e-25
d2e7ya1280 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther 1e-22
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 3e-20
d1zkpa1244 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B 1e-14
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 2e-05
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 3e-04
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 6e-04
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 0.003
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Bacillus subtilis [TaxId: 1423]

 Score =  112 bits (281), Expect = 1e-28
 Identities = 67/299 (22%), Positives = 109/299 (36%), Gaps = 36/299 (12%)

Query: 114 SGFPLLDKGKQVLAIR-GPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHL 172
           +G P   +    +A++      +  L DCGE T  Q++            ++  ++I+H+
Sbjct: 10  AGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIK-----PRKIEKIFITHM 64

Query: 173 HADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITW----LSVYAARFESVGHLYRLVPLS 228
           H DH  GL  ++ + S    E +LT+  P+ I  +    L+V          +  +    
Sbjct: 65  HGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGI 124

Query: 229 LFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLES---------------------MTT 267
           +F     I           A      +      L++                       T
Sbjct: 125 VFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVT 184

Query: 268 CLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAAL 327
                  N        K G  + +SGDT   D L  + ++ D+++HEAT   E  K A  
Sbjct: 185 LEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYD 244

Query: 328 KMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLN-----KDLSENVGIAFDNMRFP 381
             HST  QA    +E RAK ++LTH S RY     L       D+  N   A+D +   
Sbjct: 245 YYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVAAYDFLEVN 303
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 100.0
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.97
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.97
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.96
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.67
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 99.57
d2i7ta1451 Cleavage and polyadenylation specificity factor su 99.37
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.29
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.1
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 98.96
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 98.92
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 98.79
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 98.69
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 98.56
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.56
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 98.53
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.48
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.4
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 98.37
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 98.37
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.25
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.22
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.16
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.1
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.1
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.1
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.03
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 97.97
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 97.53
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 96.98
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.7e-39  Score=321.48  Aligned_cols=232  Identities=27%  Similarity=0.353  Sum_probs=175.3

Q ss_pred             cceeeeeee------cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCcee
Q psy16250        123 KQVLAIRGP------GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKL  196 (485)
Q Consensus       123 ~k~RNvS~~------~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL  196 (485)
                      +++||+||+      .++..||||||+|+..||.+ .|    ..+.+|++|||||.|+||+.||+.++..++..++..++
T Consensus        14 ~~~r~~s~~~v~~~~~~~~~iLiD~G~g~~~~l~~-~~----~~~~~i~~I~iTH~H~DH~~Gl~~ll~~~~~~~~~~~l   88 (307)
T d1y44a1          14 AKARNVTSVALKLLEERRSVWLFDCGEATQHQMLH-TT----IKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDEL   88 (307)
T ss_dssp             CSSCCBCEEEEEETTTTSEEEEECCCTTHHHHHTT-SS----CCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCE
T ss_pred             CCCCCcCEEEEEEEccCCCEEEEeCcHHHHHHHHH-cC----CChhHCCEEEEcccchHhccchhhhhhhhcccCCCCcc
Confidence            368999998      36778999999999999987 55    45678999999999999999999999888776778899


Q ss_pred             EEEcCccHHHHHHHHHHHHHhhc-cccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCC
Q psy16250        197 TLLAPRQIITWLSVYAARFESVG-HLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN  275 (485)
Q Consensus       197 ~V~~P~~~~~~L~~~~~~~~~l~-~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~  275 (485)
                      .||+|+++..+++.+........ ..+.+..   +....                     .+ ......++++++.|...
T Consensus        89 ~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~~---i~~~~---------------------~~-~~~~~~v~~~~~~~~~~  143 (307)
T d1y44a1          89 TVYGPKGIKAFIETSLAVTKTHLTYPLAIQE---IEEGI---------------------VF-EDDQFIVTAVSVIHGVE  143 (307)
T ss_dssp             EEEESTTHHHHHHHHHHHTTCCCSSCEEEEE---CCSEE---------------------EE-ECSSEEEEEEECBSSSS
T ss_pred             cccCCcchhHHHHHHhhhcccccCcceeEEE---ccCCc---------------------eE-eccCceEEEeeeccccc
Confidence            99999999999877543322111 0000000   00000                     00 00112344444444444


Q ss_pred             ccEEEEEE-------------------------------------------------eCCcEEEEECCCCCchhHHHhhc
Q psy16250        276 AFGVTMVT-------------------------------------------------KSGHKITYSGDTMPCDALVSIGK  306 (485)
Q Consensus       276 a~G~~i~~-------------------------------------------------~~G~kIvYSGDT~p~~~l~~~~~  306 (485)
                      ++||.++.                                                 ..|++++|||||++++.++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~g~~~~~sgDt~~~~~l~~~~~  223 (307)
T d1y44a1         144 AFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELAR  223 (307)
T ss_dssp             BEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEECCSCBCCHHHHHHTT
T ss_pred             cccccccccccccchhhhhhhhcCCCCcchhhhcccccEEEEeeeEEeecceeeecccccccccccccccchHHHHHhhc
Confidence            44444321                                                 35789999999999999999999


Q ss_pred             CCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCChH--HHh---hhcCcceeeeccCcEee
Q psy16250        307 NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLP--RLN---KDLSENVGIAFDNMRFP  381 (485)
Q Consensus       307 ~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~~--~l~---~~~~~~v~iA~Dgm~i~  381 (485)
                      +||+|||||+|.++..+.|..++|||+.||+++++++++|+++|||||+||....  .+.   +....++.+|+|||+|+
T Consensus       224 ~~DlLi~E~~~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvltH~s~r~~~~~~~~~~~e~~~~~~~~~~a~Dg~~i~  303 (307)
T d1y44a1         224 DCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVAAYDFLEVN  303 (307)
T ss_dssp             TCSEEEEECCBCTTCHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHHHCSSEEECCTTCEEE
T ss_pred             CCceEEEeccccchhhhhcccCCCCCHHHHHHHHHHcCCCEEEEECcCcccCCchHHHHHHHHHHHCCCcEEccCCCEEe
Confidence            9999999999999998889999999999999999999999999999999998643  222   23445788999999999


Q ss_pred             ccc
Q psy16250        382 EKK  384 (485)
Q Consensus       382 l~~  384 (485)
                      |++
T Consensus       304 i~~  306 (307)
T d1y44a1         304 VPR  306 (307)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            964
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure