Psyllid ID: psy16257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MSTEDYNEQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMSTNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGDSYKRSYDSKDDRYKSSSRYASPERKKYRDDSRDTYRDRDKYSSSSKYDKYSKDDRYSSSKDD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccccccccEEEccccccccccHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHcccccccccccccccccEEEHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHcccccccccEEEHHHHHHHHHHcccHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mstedyneqqeeeatgnhpgykknnvlplwgnertmnmnplILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVqhlepwekgsrktsgqtgmcggvrgvgagGIVSTAFCLLYKLFTLKMTRKQLNGlinhtdspyirglgfmyirytqppadlwdwyepyledeeevdvkagggqvMTIGNMLRSFLTKLewhgtlfpripvpiQQKLEkqmsakfppvysqagsgnyqqgrggggnyqnrsapgamstnakhipdneahygeaerhaktsgysdhkksdrgdsykrsydskddryksssryasperkkyrddsrdtyrdrdkysssskydkyskddryssskdd
Flexible Loop (DISEMBL)
mstedyneqqeeeatgnhpgykkNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLepwekgsrktsgqtgmCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMSTNAKHIPDNEAHYGEAErhaktsgysdhkksdrgdsykrsydskddryksssryasperkkyrddsrdtyrdrdkysssskydkyskddryssskdd
Low Complexity Region (SEG)
MSTEDYNEQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSgqtgmcggvrgvgaggivSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYSQAgsgnyqqgrggggnyqnrsAPGAMSTNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGdsykrsydskddryksssryASPErkkyrddsrdtyrdrdkysssskydkyskddryssskdd
Disordered region (IsUnstruct)
***********************NNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK*******QTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQ********************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************LWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSA***********************************************************************************************************************************
Disordered Region (DISEMBL)
****************NHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPW**********TGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMSTNAKHIPDNEAH*************************************************************************************
Disordered Region (DISPRO)
**********E*****N*****KNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFP********************************************************************************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTEDYNEQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMSTNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGDSYKRSYDSKDDRYKSSSRYASPERKKYRDDSRDTYRDRDKYSSSSKYDKYSKDDRYSSSKDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q6AXY7	542	Pre-mRNA-splicing factor	yes	N/A	0.563	0.359	0.789	2e-89
Q80SY5	542	Pre-mRNA-splicing factor	yes	N/A	0.563	0.359	0.789	2e-89
Q5VTL8	546	Pre-mRNA-splicing factor	yes	N/A	0.563	0.357	0.789	3e-89
Q6P7Y3	501	Pre-mRNA-splicing factor	yes	N/A	0.586	0.405	0.743	4e-86
Q4FZQ6	312	Pre-mRNA-splicing factor	N/A	N/A	0.306	0.339	0.275	2e-05
Q28H87	312	Pre-mRNA-splicing factor	no	N/A	0.306	0.339	0.275	2e-05
Q6DHU4	313	Pre-mRNA-splicing factor	no	N/A	0.306	0.338	0.256	0.0004
Q5RDD2	312	Pre-mRNA-splicing factor	no	N/A	0.306	0.339	0.256	0.0007
Q8HXH6	312	Pre-mRNA-splicing factor	N/A	N/A	0.306	0.339	0.256	0.0007
Q8NAV1	312	Pre-mRNA-splicing factor	no	N/A	0.306	0.339	0.256	0.0007

>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=2 SV=1

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 177/195 (90%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 42  KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 101

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 102 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 161

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW  TLFPRI
Sbjct: 162 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221

Query: 202 PVPIQQKLEKQMSAK 216
           PVP+Q+ +++Q+  +
Sbjct: 222 PVPVQKNIDQQIKTR 236

May be required for pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)

>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 177/195 (90%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 43  KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 102

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 103 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 162

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW  TLFPRI
Sbjct: 163 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 222

Query: 202 PVPIQQKLEKQMSAK 216
           PVP+Q+ +++Q+  +
Sbjct: 223 PVPVQKNIDQQIKTR 237

May be required for pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 177/195 (90%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 42  KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 101

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 102 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 161

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW  TLFPRI
Sbjct: 162 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221

Query: 202 PVPIQQKLEKQMSAK 216
           PVP+Q+ +++Q+  +
Sbjct: 222 PVPVQKNIDQQIKTR 236

May be required for pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 175/203 (86%)

Query: 14  ATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKV 73
           A     G K  N LPLWGNE+TMN+NP+ILTN+ SS YFKV LYELKTYHEV+DE+Y+KV
Sbjct: 12  AVSKPTGGKHGNNLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKV 71

Query: 74  QHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTD 133
            H+EPWEKGSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI H+D
Sbjct: 72  NHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSD 131

Query: 134 SPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEW 193
           SP IR LGFMYIRYTQPP DL DWY+ +L+DEEE+DVKAGGG VMT+G MLRSFLTKLEW
Sbjct: 132 SPDIRALGFMYIRYTQPPPDLVDWYDEFLDDEEELDVKAGGGCVMTVGEMLRSFLTKLEW 191

Query: 194 HGTLFPRIPVPIQQKLEKQMSAK 216
             TLFPRIPVP+Q+ +++ M ++
Sbjct: 192 FSTLFPRIPVPVQKAIDQHMKSR 214

May be required for pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G I  T F CL  K+  ++  +  +   I + D  Y+R LG +Y+R T    D 
Sbjct: 57  VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  +V V+   G  ++M +   +   L +      + PR+
Sbjct: 117 YKYLEPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRL 165

May be required for pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G I  T F CL  K+  ++  +  +   I + D  Y+R LG +Y+R T    D 
Sbjct: 57  VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTGTATDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  +V V+   G  ++M +   +   L +      + PR+
Sbjct: 117 YKYLEPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRL 165

May be required for pre-mRNA splicing.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G +  T F CL  K+  ++  +  +   I + D  Y+R LG MY+R T    D 
Sbjct: 57  VGGVYGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  ++  +   G  ++M +   +   L        + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRL 165

May be required for pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G I  T F CL  K+  ++  +  +   I + D  Y+R LG +Y+R T    D 
Sbjct: 57  VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  ++  +   G  ++M +   +   L        + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165

May be required for pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G I  T F CL  K+  ++  +  +   I + D  Y+R LG +Y+R T    D 
Sbjct: 57  VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  ++  +   G  ++M +   +   L        + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165

May be required for pre-mRNA splicing.

Macaca fascicularis (taxid: 9541)

>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 96  VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
           V GV  G I  T F CL  K+  ++  +  +   I + D  Y+R LG +Y+R T    D 
Sbjct: 57  VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116

Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
           + + EP   D  ++  +   G  ++M +   +   L        + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165

May be required for pre-mRNA splicing.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
383852280	389	PREDICTED: pre-mRNA-splicing factor 38B-	0.734	0.652	0.681	1e-97
307178226	390	Pre-mRNA-splicing factor 38B [Camponotus	0.754	0.669	0.694	1e-97
380013814	388	PREDICTED: pre-mRNA-splicing factor 38B-	0.736	0.657	0.677	3e-97
350411792	372	PREDICTED: pre-mRNA-splicing factor 38B-	0.736	0.685	0.678	3e-97
340711227	389	PREDICTED: pre-mRNA-splicing factor 38B-	0.736	0.655	0.678	4e-97
332020662	439	Pre-mRNA-splicing factor 38B [Acromyrmex	0.702	0.553	0.704	2e-96
193643441	324	PREDICTED: pre-mRNA-splicing factor 38B-	0.838	0.895	0.628	7e-96
322800390	358	hypothetical protein SINV_06871 [Solenop	0.702	0.678	0.697	3e-94
242009647	323	conserved hypothetical protein [Pediculu	0.682	0.730	0.691	2e-91
301605148	502	PREDICTED: hypothetical protein LOC10017	0.563	0.388	0.8	3e-90

>gi|383852280|ref|XP_003701656.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Megachile rotundata]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/273 (68%), Positives = 218/273 (79%), Gaps = 19/273 (6%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+N+LPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 32  KKSNILPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 91

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 92  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALG 151

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDEEE+DVKAGGGQVM +G++L+ FLTKLEW  TLFPRI
Sbjct: 152 FMYIRYTQPPADLFSWYSDYLEDEEELDVKAGGGQVMKMGDILKQFLTKLEWFSTLFPRI 211

Query: 202 PVPIQQKLEKQMSAKFP----------PVYSQAGSGNYQQG--RGGGGNYQNRSAPGAMS 249
           PVPIQ++LE +++ +FP          P  +    G Y     R   GN  +R+ P    
Sbjct: 212 PVPIQKELEHRLAERFPQQSMNARNAKPPITLNSHGKYSNSGNRKDNGNLTSRNQP---- 267

Query: 250 TNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDR 282
              +HIPD+EA +GEAER ++    SD ++ D+
Sbjct: 268 ---RHIPDSEAQWGEAERTSQWRARSDEERKDK 297

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178226|gb|EFN67011.1| Pre-mRNA-splicing factor 38B [Camponotus floridanus]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/268 (69%), Positives = 215/268 (80%), Gaps = 7/268 (2%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+NVLPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 30  KKSNVLPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 89

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 90  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALG 149

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDEEE+DVKAGGGQ M +G++L+ FLTKLEW  TLFPRI
Sbjct: 150 FMYIRYTQPPADLFSWYSDYLEDEEELDVKAGGGQTMKMGDILKQFLTKLEWFSTLFPRI 209

Query: 202 PVPIQQKLEKQMSAKFPPVYSQAGSGN-----YQQGRGGGGNYQNRSAPGAMSTN--AKH 254
           PVPIQ+ LE +++ +FP     A +          G+ G  + +N+     MS N  A+H
Sbjct: 210 PVPIQKDLELRLAERFPQQQVNARNAKPPITLNSHGKYGNKDSRNKDNGNLMSRNQQARH 269

Query: 255 IPDNEAHYGEAERHAKTSGYSDHKKSDR 282
           IPDNE  +GEAER +     SD  + D+
Sbjct: 270 IPDNETQWGEAERMSHWRARSDEDRKDK 297

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013814|ref|XP_003690941.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Apis florea]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/276 (67%), Positives = 217/276 (78%), Gaps = 21/276 (7%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+N+LPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 32  KKSNILPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 91

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 92  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALG 151

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL++WY  YLEDEEE+DVKAGGGQVM +G++L+ FLTKLEW  TLFPRI
Sbjct: 152 FMYIRYTQPPADLFNWYSDYLEDEEELDVKAGGGQVMKMGDILKQFLTKLEWFSTLFPRI 211

Query: 202 PVPIQQKLEKQMSAKF-----------PPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMST 250
           PVPIQ++LE +++ +F           PP+   +        R   GN  +R+ P     
Sbjct: 212 PVPIQKELEHRLAERFPQQSMNARNAKPPIILNSHGKYSNSSRKDNGNLTSRNQP----- 266

Query: 251 NAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGDSY 286
             +HIPD+EA +GEAER   TS +      DR D Y
Sbjct: 267 --RHIPDSEAQWGEAER---TSHWRARSDEDRKDKY 297

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411792|ref|XP_003489453.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Bombus impatiens]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 217/277 (78%), Gaps = 22/277 (7%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+N+LPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 32  KKSNILPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 91

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 92  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHLDSPYIRALG 151

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDE+E+DVKAGGGQVM +G++L+ FLTKLEW  TLFPRI
Sbjct: 152 FMYIRYTQPPADLFSWYSDYLEDEDELDVKAGGGQVMKMGDILKQFLTKLEWFSTLFPRI 211

Query: 202 PVPIQQKLEKQMSAKFP----------PVYSQAGSGNYQQ--GRGGGGNYQNRSAPGAMS 249
           PVPIQ++LE +++ +FP          P  +    G Y     R   GN  +R+ P    
Sbjct: 212 PVPIQKELEHRLAERFPQQSMNARNAKPPITLNSHGKYSNSSSRKDNGNLTSRNQP---- 267

Query: 250 TNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGDSY 286
              +HIPD+EA +GEAER   TS +      DR D Y
Sbjct: 268 ---RHIPDSEAQWGEAER---TSHWRARSDEDRKDKY 298

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711227|ref|XP_003394180.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Bombus terrestris]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 217/277 (78%), Gaps = 22/277 (7%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+N+LPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 32  KKSNILPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 91

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 92  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHLDSPYIRALG 151

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDE+E+DVKAGGGQVM +G++L+ FLTKLEW  TLFPRI
Sbjct: 152 FMYIRYTQPPADLFSWYSDYLEDEDELDVKAGGGQVMKMGDILKQFLTKLEWFSTLFPRI 211

Query: 202 PVPIQQKLEKQMSAKFP----------PVYSQAGSGNYQQ--GRGGGGNYQNRSAPGAMS 249
           PVPIQ++LE +++ +FP          P  +    G Y     R   GN  +R+ P    
Sbjct: 212 PVPIQKELEHRLAERFPQQSMNARNAKPPITLNSHGKYSNSSSRKDNGNLTSRNQP---- 267

Query: 250 TNAKHIPDNEAHYGEAERHAKTSGYSDHKKSDRGDSY 286
              +HIPD+EA +GEAER   TS +      DR D Y
Sbjct: 268 ---RHIPDSEAQWGEAER---TSHWRARSDEDRKDKY 298

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020662|gb|EGI61068.1| Pre-mRNA-splicing factor 38B [Acromyrmex echinatior]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/261 (70%), Positives = 211/261 (80%), Gaps = 18/261 (6%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+NVLPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 32  KKSNVLPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 91

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 92  GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALG 151

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDEEE+DVKAGGGQVM +G++L+ FLTKLEW  TLFPRI
Sbjct: 152 FMYIRYTQPPADLFSWYNDYLEDEEELDVKAGGGQVMKMGDILKQFLTKLEWFSTLFPRI 211

Query: 202 PVPIQQKLEKQMSAKFP----------PVYSQAGSGNY--QQGRGGGGNYQNRSAPGAMS 249
           PVPIQ+ LE +++ +FP          P  +    G Y  + GR   GN  +R+      
Sbjct: 212 PVPIQKDLELRLAERFPQQQVNARNAKPPITLNSHGKYGNKDGRKDNGNLTSRNQ----- 266

Query: 250 TNAKHIPDNEAHYGEAERHAK 270
              +HIPDNE  +GEAER ++
Sbjct: 267 -QPRHIPDNETQWGEAERMSQ 286

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643441|ref|XP_001945550.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Acyrthosiphon pisum]

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 201/320 (62%), Positives = 232/320 (72%), Gaps = 30/320 (9%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           +KNN +P+WGNERTMN+N LILTNIQSSHYFKVNLYELKTYHEV+DE+YYKVQHLEPWEK
Sbjct: 25  RKNNTMPVWGNERTMNLNTLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVQHLEPWEK 84

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLK+TRKQ+ GLI H DSPYIR LG
Sbjct: 85  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKLTRKQVTGLITHCDSPYIRALG 144

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPP DLWDWYE +L+DEEE+DV+AGGGQ MTIGN+L+SFL KLEW+ TLFPRI
Sbjct: 145 FMYIRYTQPPGDLWDWYESFLDDEEEMDVRAGGGQTMTIGNILKSFLFKLEWYSTLFPRI 204

Query: 202 PVPIQQKLEKQMSAKFPPVYSQAGSGNYQQGRG--GGGNYQNRSAPGAMSTNAKHIPDNE 259
           PVPIQQ++EK+MS K+PPV  +         R      +++NR   G +S  A+      
Sbjct: 205 PVPIQQQMEKKMSEKYPPVVEETPRRINIPERNFRDRDDHRNR---GDLSDTAR------ 255

Query: 260 AHYGEAERHAKTSGYSD---HKKSDRGDSYKRS-YDSKDDRYKSSS----RYASPERKKY 311
                  R      Y D    +KS   +S +RS Y S+ D YK SS    +Y S +R   
Sbjct: 256 PRERNERRERSHRDYRDRDYERKSSNANSRERSPYVSRRDEYKKSSSRSPKYGSSKR--- 312

Query: 312 RDDSRDTYRDRDKYSSSSKY 331
                   RDRD Y S SKY
Sbjct: 313 --------RDRDDYKSRSKY 324

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800390|gb|EFZ21394.1| hypothetical protein SINV_06871 [Solenopsis invicta]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/261 (69%), Positives = 209/261 (80%), Gaps = 18/261 (6%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           KK+NVLPLWGNERTMN+NPLILTNIQSSHYFKVNLYELKTYHEV+DE+YYKV HLEPWEK
Sbjct: 77  KKSNVLPLWGNERTMNLNPLILTNIQSSHYFKVNLYELKTYHEVIDEIYYKVSHLEPWEK 136

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVGAGGIVSTA+CLLYKLFTL++TRKQLNGLINH DSPYIR LG
Sbjct: 137 GSRKTAGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLRLTRKQLNGLINHPDSPYIRALG 196

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADL+ WY  YLEDEEE+DVKAGGGQ M +G++L+ FLTKLEW  TLFPRI
Sbjct: 197 FMYIRYTQPPADLFSWYSDYLEDEEELDVKAGGGQTMKMGDILKQFLTKLEWFSTLFPRI 256

Query: 202 PVPIQQKLEKQMSAKFP----------PVYSQAGSGNY--QQGRGGGGNYQNRSAPGAMS 249
           PVPIQ+ LE +++ +FP          P  +    G Y  + GR   GN   R+      
Sbjct: 257 PVPIQKDLELRLAERFPQQQVNARNAKPPITLNSHGKYGNKDGRKDNGNLTTRNQ----- 311

Query: 250 TNAKHIPDNEAHYGEAERHAK 270
              +HIPD+E  +GEAER ++
Sbjct: 312 -QPRHIPDSETQWGEAERMSQ 331

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009647|ref|XP_002425594.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509487|gb|EEB12856.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 206/253 (81%), Gaps = 17/253 (6%)

Query: 36  MNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGG 95
           MN+NPLILTNIQSS+YFKVNLYELKTY EV+DE++YKV HLEPWEKGSRKT+GQTGMCGG
Sbjct: 1   MNLNPLILTNIQSSYYFKVNLYELKTYREVIDEIFYKVNHLEPWEKGSRKTAGQTGMCGG 60

Query: 96  VRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLW 155
           VRGVGAGGIVSTA+CLLYKLFTL +TRKQLNGLINH DSPYIR LGFMYIRYTQPPADL+
Sbjct: 61  VRGVGAGGIVSTAYCLLYKLFTLHLTRKQLNGLINHRDSPYIRALGFMYIRYTQPPADLY 120

Query: 156 DWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSA 215
           DW+E YLED EE+DVKAGGGQ+MTIG+MLR FLTKLEW  TLFPRIPVPIQQK+E++++ 
Sbjct: 121 DWFENYLEDAEEMDVKAGGGQIMTIGDMLRHFLTKLEWFSTLFPRIPVPIQQKIERKINE 180

Query: 216 KFPPVYSQAGSGNYQQGRGGGGNYQNRSAPGAMSTNAKHIPDNEAHYGEAERHAKTSGYS 275
           +FPP      + N Q+ +G   N++           A+HIPD+E  +GEAE++++ SG  
Sbjct: 181 RFPP-----HAQNRQKNQGFDSNHE-----------ARHIPDDEVSFGEAEKYSR-SGLM 223

Query: 276 DHKKSDRGDSYKR 288
                 RGD Y R
Sbjct: 224 GRSNDRRGDRYNR 236

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301605148|ref|XP_002932194.1| PREDICTED: hypothetical protein LOC100170167 [Xenopus (Silurana) tropicalis]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 156/195 (80%), Positives = 177/195 (90%)

Query: 22  KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
           K  NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 30  KSGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 89

Query: 82  GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
           GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 90  GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 149

Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
           FMYIRYTQPPADLWDWYE +L+DEEE+DVKAGGG +MTIG MLRS+LTKLEW  TLFPRI
Sbjct: 150 FMYIRYTQPPADLWDWYEDFLDDEEELDVKAGGGCIMTIGEMLRSYLTKLEWFSTLFPRI 209

Query: 202 PVPIQQKLEKQMSAK 216
           PVP+Q+ +++Q+  K
Sbjct: 210 PVPVQKHIDQQIKTK 224

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
UNIPROTKB|Q5VTL8	546	PRPF38B "Pre-mRNA-splicing fac	0.601	0.380	0.661	1.3e-75
RGD|1562940	542	Prpf38b "PRP38 pre-mRNA proces	0.601	0.383	0.661	1.3e-75
MGI|MGI:1914171	542	Prpf38b "PRP38 pre-mRNA proces	0.563	0.359	0.702	1.7e-75
ZFIN|ZDB-GENE-040426-2878	501	prpf38b "PRP38 pre-mRNA proces	0.604	0.417	0.650	5.1e-74
FB|FBgn0030468	418	CG1622 [Drosophila melanogaste	0.601	0.497	0.628	5.9e-73
WB|WBGene00022434	327	Y108G3AL.2 [Caenorhabditis ele	0.609	0.645	0.492	5e-60
TAIR|locus:2169160	393	ATSRL1 [Arabidopsis thaliana (	0.297	0.262	0.519	4.6e-40
DICTYBASE|DDB_G0288401	418	prpf38b "putative U4/U6.U5 sma	0.306	0.253	0.481	9e-38

UNIPROTKB|Q5VTL8 PRPF38B "Pre-mRNA-splicing factor 38B" [Homo sapiens (taxid:9606)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 141/213 (66%), Positives = 167/213 (78%)

Query:     9 QQEEEATGN---HPGY--KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYH 63
             QQ+++  G     P    K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYH
Sbjct:    24 QQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYH 83

Query:    64 EVLDEVYYKVQHLEPWEKGSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRK 123
             EV+DE+Y+KV H+EPWEKGSRKT+                  STAFCLLYKLFTLK+TRK
Sbjct:    84 EVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRK 143

Query:   124 QLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNM 183
             Q+ GLI HTDSPYIR LGFMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG M
Sbjct:   144 QVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEM 203

Query:   184 LRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAK 216
             LRSFLTKLEW  TLFPRIPVP+Q+ +++Q+  +
Sbjct:   204 LRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTR 236

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1562940 Prpf38b "PRP38 pre-mRNA processing factor 38 (yeast) domain containing B" [Rattus norvegicus (taxid:10116)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 141/213 (66%), Positives = 167/213 (78%)

Query:     9 QQEEEATGN---HPGY--KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYH 63
             QQ+++  G     P    K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYH
Sbjct:    24 QQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYH 83

Query:    64 EVLDEVYYKVQHLEPWEKGSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRK 123
             EV+DE+Y+KV H+EPWEKGSRKT+                  STAFCLLYKLFTLK+TRK
Sbjct:    84 EVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRK 143

Query:   124 QLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNM 183
             Q+ GLI HTDSPYIR LGFMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG M
Sbjct:   144 QVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEM 203

Query:   184 LRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAK 216
             LRSFLTKLEW  TLFPRIPVP+Q+ +++Q+  +
Sbjct:   204 LRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTR 236

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

MGI|MGI:1914171 Prpf38b "PRP38 pre-mRNA processing factor 38 (yeast) domain containing B" [Mus musculus (taxid:10090)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 137/195 (70%), Positives = 160/195 (82%)

Query:    22 KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
             K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct:    43 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 102

Query:    82 GSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
             GSRKT+                  STAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct:   103 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 162

Query:   142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
             FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW  TLFPRI
Sbjct:   163 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 222

Query:   202 PVPIQQKLEKQMSAK 216
             PVP+Q+ +++Q+  +
Sbjct:   223 PVPVQKNIDQQIKTR 237

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

ZFIN|ZDB-GENE-040426-2878 prpf38b "PRP38 pre-mRNA processing factor 38 (yeast) domain containing B" [Danio rerio (taxid:7955)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 136/209 (65%), Positives = 164/209 (78%)

Query:     8 EQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLD 67
             +QQ+++A     G K  N LPLWGNE+TMN+NP+ILTN+ SS YFKV LYELKTYHEV+D
Sbjct:     6 QQQQQQAVSKPTGGKHGNNLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTYHEVVD 65

Query:    68 EVYYKVQHLEPWEKGSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRKQLNG 127
             E+Y+KV H+EPWEKGSRKT+                  STAFCLLYKLFTLK+TRKQ+ G
Sbjct:    66 EIYFKVNHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMG 125

Query:   128 LINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSF 187
             LI H+DSP IR LGFMYIRYTQPP DL DWY+ +L+DEEE+DVKAGGG VMT+G MLRSF
Sbjct:   126 LITHSDSPDIRALGFMYIRYTQPPPDLVDWYDEFLDDEEELDVKAGGGCVMTVGEMLRSF 185

Query:   188 LTKLEWHGTLFPRIPVPIQQKLEKQMSAK 216
             LTKLEW  TLFPRIPVP+Q+ +++ M ++
Sbjct:   186 LTKLEWFSTLFPRIPVPVQKAIDQHMKSR 214

GO:0003674 "molecular_function" evidence=ND

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

FB|FBgn0030468 CG1622 [Drosophila melanogaster (taxid:7227)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 132/210 (62%), Positives = 165/210 (78%)

Query:     4 EDYNEQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYH 63
             EDY+      A G     K++N LP WGNE +MN+N LIL NIQSS YFKV+L++LKTYH
Sbjct:     3 EDYSASSS--AGGGKKAGKQHNTLPFWGNESSMNLNALILANIQSSSYFKVHLFKLKTYH 60

Query:    64 EVLDEVYYKVQHLEPWEKGSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRK 123
             EV+DE+YY+V+H+EPWE+GSRKTS                  STA+CLLYKL+TL++TRK
Sbjct:    61 EVVDEIYYQVKHMEPWERGSRKTSGQTGMCGGVRGVGAGGIVSTAYCLLYKLYTLRLTRK 120

Query:   124 QLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNM 183
             Q+NGL+NHTDS YIR LGFMY+RYTQPP DL+DWYE YL+DEEE+DVKAGGGQV+TIG M
Sbjct:   121 QINGLLNHTDSAYIRALGFMYLRYTQPPGDLYDWYEDYLQDEEEIDVKAGGGQVLTIGQM 180

Query:   184 LRSFLTKLEWHGTLFPRIPVPIQQKLEKQM 213
             +  F+TKL+W  TLFPRIPVPIQ+++EK++
Sbjct:   181 VYQFMTKLDWFSTLFPRIPVPIQKQIEKRI 210

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

WB|WBGene00022434 Y108G3AL.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 105/213 (49%), Positives = 156/213 (73%)

Query:     5 DYNEQQE-EEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYH 63
             +Y E++E E+  G + G K++N LP+WGN+ TMN+N L+L NI+ S+Y+K NL E+  + 
Sbjct:    33 NYGEEEEYEDEEGTYKG-KRSNTLPVWGNKVTMNLNTLVLENIRESYYYKNNLVEIDNFQ 91

Query:    64 EVLDEVYYKVQHLEPWEKGSRKTSXXXXXXXXXXXXXXXXXXSTAFCLLYKLFTLKMTRK 123
              ++++++Y+V+HLEPWEKG+R+                    S+A+CLLY+LF LK++RK
Sbjct:    92 TLIEQIFYQVKHLEPWEKGTRRLQGMTGMCGGVRGVGAGGVVSSAYCLLYRLFNLKISRK 151

Query:   124 QLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNM 183
             QL  ++N   S YIRGLGFMYIRYTQPPADLW W EPYL+D+ E+D ++GGG +MT G +
Sbjct:   152 QLISMLNSRQSVYIRGLGFMYIRYTQPPADLWYWLEPYLDDDREIDPRSGGGDLMTFGQL 211

Query:   184 LRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAK 216
             +R+ + KL+W+GTLFPRIPVPIQ+ ++++ S +
Sbjct:   212 VRTMINKLDWYGTLFPRIPVPIQKDIDEKFSER 244

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2169160 ATSRL1 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 54/104 (51%), Positives = 75/104 (72%)

Query:   106 STAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDE 165
             STA+CLLYK FT+K+T KQ++GL+ HTDSPYIR +GF+Y+RY      LW WYEPY++D+
Sbjct:    64 STAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDD 123

Query:   166 EEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKL 209
             EE       G++ T+G  +R  L  L +  TLFPRIPVP+ +++
Sbjct:   124 EEFS-PGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQI 166

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=ISS

GO:0009651 "response to salt stress" evidence=IGI;IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

DICTYBASE|DDB_G0288401 prpf38b "putative U4/U6.U5 small nuclear ribonucleoparticle-associated protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 281 (104.0 bits), Expect = 9.0e-38, Sum P(2) = 9.0e-38
 Identities = 52/108 (48%), Positives = 72/108 (66%)

Query:   106 STAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDE 165
             ST FCLLYK F +K+T KQ+ GL+ + +SPYIR +G +Y+RY  PPA+LWDWY  YL+D+
Sbjct:    62 STTFCLLYKFFLMKLTVKQMKGLLGNNESPYIRAIGALYLRYCHPPANLWDWYVDYLDDQ 121

Query:   166 EEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQM 213
             E V +       +TI   L   L   ++ GT+ PRIP  IQQ L+K++
Sbjct:   122 ETVFISKN--TEVTIQRFLLDLLKDNKFSGTVLPRIPTKIQQDLDKKI 167

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P7Y3	PR38B_DANRE	No assigned EC number	0.7438	0.5867	0.4051	yes	N/A
Q5VTL8	PR38B_HUMAN	No assigned EC number	0.7897	0.5635	0.3571	yes	N/A
Q80SY5	PR38B_MOUSE	No assigned EC number	0.7897	0.5635	0.3597	yes	N/A
Q6AXY7	PR38B_RAT	No assigned EC number	0.7897	0.5635	0.3597	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	346
pfam03371	173	pfam03371, PRP38, PRP38 family	7e-67

>gnl|CDD|217519 pfam03371, PRP38, PRP38 family

 Score =  207 bits (530), Expect = 7e-67
 Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 22/182 (12%)

Query: 27  LPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKT 86
             L G   T+ +  +I   I  S Y+K NL+ L     ++DE+   V H+     G+R+ 
Sbjct: 5   DKLNGTNPTLLIEKIIRDRIYDSPYYKENLFGLNA-ETIVDEIVEIVDHIGGTYGGNRR- 62

Query: 87  SGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIR 146
                              S   CLL KL  ++ +++ +  L+N+ D  YIR LG  Y+R
Sbjct: 63  ------------------PSPFLCLLLKLLQIQPSKEIIKELLNNEDFKYIRALGLFYLR 104

Query: 147 YTQPPADLWDWYEPYLEDEEEVDVKAGGGQ--VMTIGNMLRSFLTKLEWHGTLFPRIPVP 204
            T PPADL+ W EPYL+D  ++  K G G   +  +   +   LTK     T+ PRIP  
Sbjct: 105 LTYPPADLYKWLEPYLQDYRKLRPKLGDGDFKLTHMDEFVDDLLTKDRVCDTILPRIPKR 164

Query: 205 IQ 206
           I 
Sbjct: 165 II 166

Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG2888|consensus	453		100.0
PF03371	172	PRP38: PRP38 family; InterPro: IPR005037 Members o	100.0
KOG2889|consensus	204		100.0
KOG0835|consensus	367		96.79
KOG4676|consensus	479		95.97
KOG0151|consensus	877		93.52
KOG0147|consensus	549		93.26
KOG0670|consensus	752		92.99
KOG0113|consensus	335		91.16
KOG2888|consensus	453		91.15
KOG0151|consensus	877		91.02
KOG4246|consensus	1194		89.49
KOG4368|consensus	757		88.46
KOG0113|consensus	335		87.51
KOG0835|consensus	367		87.32
KOG0796|consensus	319		81.78
KOG0796|consensus	319		81.08

>KOG2888|consensus

Probab=100.00  E-value=5.9e-78  Score=579.91  Aligned_cols=206  Identities=74%  Similarity=1.315  Sum_probs=201.7

Q ss_pred             cCCCCCCCCCCeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccC
Q psy16257         15 TGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCG   94 (346)
Q Consensus        15 ~~~~~~~~~~n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~G   94 (346)
                      ++...++|+.|+||+|||..|||||+||..||++|.|||++||+|+||++||||||++|+|||||+.||++|+||+||||
T Consensus        35 ~k~~~~gkq~ntlp~wGne~tmnLn~lil~NIlsS~YfKv~LyelktyhevideIyyqVkHvEPWekGsrkt~gqtgmCg  114 (453)
T KOG2888|consen   35 EKGTYKGKQSNTLPVWGNEVTMNLNTLILENILSSYYFKVNLYELKTYHEVIDEIYYQVKHVEPWEKGSRKTQGQTGMCG  114 (453)
T ss_pred             cccccccccccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccCchhcCCccccccccccc
Confidence            36667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCcCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCC
Q psy16257         95 GVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGG  174 (346)
Q Consensus        95 G~~g~~a~~~PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~  174 (346)
                      ||+||||||++||+||||||||+|++|.+||.+||+|.|++|||||||||||||.||.+||.||||||+|.++|.+++++
T Consensus       115 gvRGvgaggivSTAyCLLYklftlklTrKQ~~gllnhtdSpYIRalGFmYiRYtqpp~dLw~WyEpyldDdeeidpkagg  194 (453)
T KOG2888|consen  115 GVRGVGAGGIVSTAYCLLYKLFTLKLTRKQLIGLLNHTDSPYIRALGFMYIRYTQPPADLWDWYEPYLDDDEEIDPKAGG  194 (453)
T ss_pred             cccccCcCcchhhHHHHHHHHHHHHhHHHHHHHHhhcCCchhhhhheeeEEeecCChhHHHHHhhhhccchhhcCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeHHHHHHHHHhcccccccCCCCCChhHhHHHhhcccccCCCC
Q psy16257        175 GQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPV  220 (346)
Q Consensus       175 g~~~tmdefvd~LLt~~~~~~~~LPRip~ri~le~~~~L~~r~~p~  220 (346)
                      |.+|||+++|..||++..||+|.|||||++|+++|..+|+.+..|.
T Consensus       195 G~vmTiGqmvr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~r~t  240 (453)
T KOG2888|consen  195 GDVMTIGQMVRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERKRPT  240 (453)
T ss_pred             CceeeHHHHHHHHHhhhhHHhccCCCCCchHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999988754

>PF03371 PRP38: PRP38 family; InterPro: IPR005037 Members of this family are related to the pre mRNA splicing factor PRP38 from yeast [], therefore all the members of this family could be involved in splicing

Probab=100.00  E-value=2.2e-62  Score=440.03  Aligned_cols=171  Identities=39%  Similarity=0.811  Sum_probs=163.6

Q ss_pred             CCeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCC
Q psy16257         24 NNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGG  103 (346)
Q Consensus        24 ~n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~  103 (346)
                      +|++++|||++|||||+|+|+||++|.|||++||+++++++|||+|+++|+|||||..|+                   +
T Consensus         1 s~~~~~~g~~~~~~i~~ilr~~I~~S~Y~K~~l~~l~~~~~vvd~i~~~v~~ig~~~~g~-------------------~   61 (172)
T PF03371_consen    1 SNALQIHGNNPTFNIEKILRQNIYNSEYYKENLFGLSTFETVVDEIYEIVRYIGPWYGGN-------------------R   61 (172)
T ss_pred             CCCcccCCCCchhcccHHHHHHHhcCHHHHHHhhcCCcHHHHHHHHHHHhhhhhcccCCC-------------------C
Confidence            367899999999999999999999999999999999999999999998899998886433                   3


Q ss_pred             CcCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCCC-ceeeHHH
Q psy16257        104 IVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGG-QVMTIGN  182 (346)
Q Consensus       104 ~PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~g-~~~tmde  182 (346)
                      +||+|||||||||||+||++||.+||+|.+||||||||||||||+++|.++|+||||||+||+||+++..+| +++||||
T Consensus        62 ~Ps~f~CLL~KLl~l~pt~~~v~~~l~~~d~kYiralg~lYlR~~~~p~~~~~~lep~l~D~rkl~~~~~~~~~~~~~de  141 (172)
T PF03371_consen   62 RPSPFFCLLYKLLQLRPTKEQVKELLNNDDFKYIRALGFLYLRYVGPPEELYKWLEPYLNDYRKLRVRNDGGDKITHMDE  141 (172)
T ss_pred             CCchHHHHHHHHHhcccCHHHHHHHHcCCCccHHHHHHHHHheeeCCHHHHHHHHHHHhccceeeeeecCCCceeEEHHH
Confidence            599999999999999999999999999999999999999999999999999999999999999999999988 7999999


Q ss_pred             HHHHHHhcccccccCCCCCChhHhHHHhhcc
Q psy16257        183 MLRSFLTKLEWHGTLFPRIPVPIQQKLEKQM  213 (346)
Q Consensus       183 fvd~LLt~~~~~~~~LPRip~ri~le~~~~L  213 (346)
                      ||++||++++||||+|||||++.++|+.++|
T Consensus       142 ~vd~LL~~~~~~~~~LPrlp~r~~~e~~~~~  172 (172)
T PF03371_consen  142 FVDDLLTKDRYCGTILPRLPKRIVLEIDDEL  172 (172)
T ss_pred             HHHHHhhhCcEecccCCCCCchHHHHhhccC
Confidence            9999999999999999999999999999886

This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation [].

>KOG2889|consensus

Probab=100.00  E-value=7.1e-48  Score=345.22  Aligned_cols=177  Identities=21%  Similarity=0.353  Sum_probs=165.5

Q ss_pred             CeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCC
Q psy16257         25 NVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGI  104 (346)
Q Consensus        25 n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~  104 (346)
                      -+..+||+++|+++++|+|++||+|.|||++||+|+ ++.|||.+. ++.|+             ||.+||      +.+
T Consensus         8 ~a~~~retnpq~lv~KiiRsri~~sv~wke~cfgl~-aellvdkam-~l~~l-------------gg~yGg------n~k   66 (204)
T KOG2889|consen    8 IARMTRETNPQFLVEKIIRSRIYDSVYWKEQCFGLT-AELLVDKAM-ELLYL-------------GGKYGG------NSK   66 (204)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHhcchH-HHHHH-------------HHHhcC------CCC
Confidence            356789999999999999999999999999999998 699999996 78888             344554      468


Q ss_pred             cCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCCC--ceeeHHH
Q psy16257        105 VSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGG--QVMTIGN  182 (346)
Q Consensus       105 PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~g--~~~tmde  182 (346)
                      |++|+||++|||||+|+++++.++|.+.+|||||||||||+||++...++|++|||+|+|||||++.+.+|  ..|||||
T Consensus        67 pt~fKOG~lkmLqiqpeK~i~~efi~~~~fkY~ralgafYlRLt~~~~~~y~ylepl~nDyRKir~~~~~g~~~l~ylDe  146 (204)
T KOG2889|consen   67 PTPFLCLDLKMLQIQPEKEIGSEFIMNHDFKYVRALGAFYLRLTGTDVDVYKYLEPLLNDYRKIRVVNGQGNRTLMYLDE  146 (204)
T ss_pred             CccHHHHHHHHcCCCCCcccchHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhcCCCceeeeeHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988  4789999


Q ss_pred             HHHHHHhcccccccCCCCCChhHhHHHhhcccccCCCCcc
Q psy16257        183 MLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYS  222 (346)
Q Consensus       183 fvd~LLt~~~~~~~~LPRip~ri~le~~~~L~~r~~p~~~  222 (346)
                      |||+||+++++|+|.|||+.++.++|..+.|+++.+.+-+
T Consensus       147 ~iDdLL~~~r~cdI~Lprl~kr~~le~~~~lep~~s~ld~  186 (204)
T KOG2889|consen  147 VIDDLLNKSRICDIHLPRLDKRWQLEELDLLEPRKSSLDE  186 (204)
T ss_pred             HHHHHhhhcceeccccchhhhhhhhhhhcccccccccccc
Confidence            9999999999999999999999999999999999997754

>KOG0835|consensus

Probab=96.79  E-value=0.0045  Score=61.65  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             CcCchhHhHhhhccccCCHHHHHHh---hcC--------CCCCceeeehhhhh
Q psy16257        104 IVSTAFCLLYKLFTLKMTRKQLNGL---INH--------TDSPYIRGLGFMYI  145 (346)
Q Consensus       104 ~PStffCLL~KLlqi~pt~~qi~~~---L~~--------~d~kYiRaLg~lYl  145 (346)
                      .|..++--.+.-||+-|..++++..   .+.        -..|-+.|+|++||
T Consensus       140 hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyL  192 (367)
T KOG0835|consen  140 HPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYL  192 (367)
T ss_pred             ccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHH
Confidence            4667777777888888888665543   321        25778889999998

>KOG4676|consensus

Probab=95.97  E-value=0.0045  Score=62.91  Aligned_cols=13  Identities=0%  Similarity=0.046  Sum_probs=6.2

Q ss_pred             cCCCCCCcccchh
Q psy16257        251 NAKHIPDNEAHYG  263 (346)
Q Consensus       251 ~~r~~~~~~~~~~  263 (346)
                      +.++++.++++.+
T Consensus       292 rrrdRs~dRERrr  304 (479)
T KOG4676|consen  292 RRRDRSKDRERRR  304 (479)
T ss_pred             chhhccchhhhhh
Confidence            4444555554444

>KOG0151|consensus

Probab=93.52  E-value=0.06  Score=58.37  Aligned_cols=15  Identities=13%  Similarity=-0.108  Sum_probs=10.3

Q ss_pred             eeeHHHHHHHHHhcc
Q psy16257        177 VMTIGNMLRSFLTKL  191 (346)
Q Consensus       177 ~~tmdefvd~LLt~~  191 (346)
                      ..+.+.+.+-||..+
T Consensus       735 ~~qpe~~~d~~l~q~  749 (877)
T KOG0151|consen  735 REQPENERDRLLRQD  749 (877)
T ss_pred             ccChhhHHHHHHHHH
Confidence            346777777777665

>KOG0147|consensus

Probab=93.26  E-value=0.16  Score=53.52  Aligned_cols=12  Identities=8%  Similarity=0.221  Sum_probs=7.3

Q ss_pred             HHHHHHHHHhcc
Q psy16257        180 IGNMLRSFLTKL  191 (346)
Q Consensus       180 mdefvd~LLt~~  191 (346)
                      |++.++.+|...
T Consensus         5 ~~~d~Ea~lE~p   16 (549)
T KOG0147|consen    5 LDSDIEAMLEAP   16 (549)
T ss_pred             hhhHHHHHhhhh
Confidence            566666666554

>KOG0670|consensus

Probab=92.99  E-value=0.12  Score=55.16  Aligned_cols=17  Identities=24%  Similarity=0.433  Sum_probs=7.6

Q ss_pred             hhccCCCCCCccccCCC
Q psy16257        266 ERHAKTSGYSDHKKSDR  282 (346)
Q Consensus       266 ~R~~~~~~r~~~r~rdr  282 (346)
                      ++.+.+++++..++.++
T Consensus       137 ~rrsiDR~r~~~r~~~~  153 (752)
T KOG0670|consen  137 ERRSIDRDREDNRRDPR  153 (752)
T ss_pred             hhhhhhccccccccCcc
Confidence            34344555544444433

>KOG0113|consensus

Probab=91.16  E-value=0.51  Score=46.90  Aligned_cols=14  Identities=21%  Similarity=0.299  Sum_probs=6.3

Q ss_pred             CCCceeeehhhhhhhcc
Q psy16257        133 DSPYIRGLGFMYIRYTQ  149 (346)
Q Consensus       133 d~kYiRaLg~lYlRl~~  149 (346)
                      +-||.+.   |--||-+
T Consensus        98 gDPy~TL---Fv~RLny  111 (335)
T KOG0113|consen   98 GDPYKTL---FVARLNY  111 (335)
T ss_pred             CCcccee---eeeeccc
Confidence            3455443   3335554

>KOG2888|consensus

Probab=91.15  E-value=0.17  Score=50.92  Aligned_cols=12  Identities=33%  Similarity=0.268  Sum_probs=6.7

Q ss_pred             hhcCCCCCceee
Q psy16257        128 LINHTDSPYIRG  139 (346)
Q Consensus       128 ~L~~~d~kYiRa  139 (346)
                      ||..-.|-|||-
T Consensus       156 YIRalGFmYiRY  167 (453)
T KOG2888|consen  156 YIRALGFMYIRY  167 (453)
T ss_pred             hhhhheeeEEee
Confidence            455555666654

>KOG0151|consensus

Probab=91.02  E-value=0.17  Score=55.10  Aligned_cols=11  Identities=0%  Similarity=0.060  Sum_probs=6.4

Q ss_pred             ccchHHHHhhh
Q psy16257         36 MNMNPLILTNI   46 (346)
Q Consensus        36 ~~i~~ilR~~I   46 (346)
                      |+|+.||.+-|
T Consensus       490 yLvsDIL~N~s  500 (877)
T KOG0151|consen  490 YLVSDILHNSS  500 (877)
T ss_pred             HHHHHHHhhhh
Confidence            55666666544

>KOG4246|consensus

Probab=89.49  E-value=0.4  Score=53.08  Aligned_cols=16  Identities=13%  Similarity=-0.062  Sum_probs=12.4

Q ss_pred             hhhccccCCHHHHHHh
Q psy16257        113 YKLFTLKMTRKQLNGL  128 (346)
Q Consensus       113 ~KLlqi~pt~~qi~~~  128 (346)
                      .||-..+|+..|-..+
T Consensus       116 ~~ls~~qP~~q~q~s~  131 (1194)
T KOG4246|consen  116 DKLSGYQPVDQRQYSE  131 (1194)
T ss_pred             ccccCCCchhhhhhcc
Confidence            6788888988876655

>KOG4368|consensus

Probab=88.46  E-value=0.8  Score=49.12  Aligned_cols=11  Identities=9%  Similarity=0.365  Sum_probs=5.1

Q ss_pred             HHHhccccccc
Q psy16257        186 SFLTKLEWHGT  196 (346)
Q Consensus       186 ~LLt~~~~~~~  196 (346)
                      .++..--||+.
T Consensus       510 ~~iPn~py~dl  520 (757)
T KOG4368|consen  510 SLIPNVPYFDL  520 (757)
T ss_pred             ccCCCCccccc
Confidence            34444455553

>KOG0113|consensus

Probab=87.51  E-value=1.2  Score=44.42  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=17.1

Q ss_pred             chhH-hHhhhccccCCHHHHHH-hhcCCCCCceee
Q psy16257        107 TAFC-LLYKLFTLKMTRKQLNG-LINHTDSPYIRG  139 (346)
Q Consensus       107 tffC-LL~KLlqi~pt~~qi~~-~L~~~d~kYiRa  139 (346)
                      -.|| |++--|...-++.-|.. |-....-|=|++
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrirl  133 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRL  133 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcceeEEE
Confidence            3455 44445566666666653 334455555544

>KOG0835|consensus

Probab=87.32  E-value=1.5  Score=44.13  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=12.1

Q ss_pred             ehhhhhhhcc-Cchh-HHHhhhhhcccc
Q psy16257        140 LGFMYIRYTQ-PPAD-LWDWYEPYLEDE  165 (346)
Q Consensus       140 Lg~lYlRl~~-~p~e-l~~~lep~l~Dy  165 (346)
                      |..+||--.. +|.. |-+..-.|++|-
T Consensus       144 lii~YLqtL~~~~~~~l~Q~~wNfmNDs  171 (367)
T KOG0835|consen  144 LIIMYLQTLQLPPNLKLLQAAWNFMNDS  171 (367)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhhc
Confidence            4455664443 4443 433333455553

>KOG0796|consensus

Probab=81.78  E-value=0.67  Score=46.25  Aligned_cols=7  Identities=0%  Similarity=-0.031  Sum_probs=2.5

Q ss_pred             hHHHhhh
Q psy16257        153 DLWDWYE  159 (346)
Q Consensus       153 el~~~le  159 (346)
                      .|-....
T Consensus       187 ~VCeVCG  193 (319)
T KOG0796|consen  187 RVCEVCG  193 (319)
T ss_pred             hHHHhhh
Confidence            3333333

>KOG0796|consensus

Probab=81.08  E-value=0.8  Score=45.74  Aligned_cols=15  Identities=27%  Similarity=0.315  Sum_probs=6.9

Q ss_pred             hhcCcchHHHHHHHHH
Q psy16257         55 NLYELKTYHEVLDEVY   70 (346)
Q Consensus        55 ~l~~L~t~~~vvdeI~   70 (346)
                      ..|... +.++|..++
T Consensus        78 ~~~E~d-~~~~l~~~v   92 (319)
T KOG0796|consen   78 YGYEWD-ALEILERFV   92 (319)
T ss_pred             hhhhHH-HHHHHHHHH
Confidence            445554 444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.35
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.31

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.35  E-value=0.00022  Score=71.02  Aligned_cols=17  Identities=12%  Similarity=0.096  Sum_probs=7.9

Q ss_pred             hhccccCCHHHHHHhhc
Q psy16257        114 KLFTLKMTRKQLNGLIN  130 (346)
Q Consensus       114 KLlqi~pt~~qi~~~L~  130 (346)
                      .=|-...|.++|..++.
T Consensus       108 ~nL~~~~te~~L~~~F~  124 (437)
T 3pgw_S          108 ARVNYDTTESKLRREFE  124 (437)
T ss_pred             eCCCCCCCHHHHHHHHH
Confidence            33334445555555443

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.31  E-value=0.00012  Score=72.87  Aligned_cols=9  Identities=22%  Similarity=0.236  Sum_probs=4.1

Q ss_pred             hhHHHhhhh
Q psy16257        152 ADLWDWYEP  160 (346)
Q Consensus       152 ~el~~~lep  160 (346)
                      .+|..+|..
T Consensus       117 ~~L~~~F~~  125 (437)
T 3pgw_S          117 SKLRREFEV  125 (437)
T ss_pred             HHHHHHHHH
Confidence            344444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00