Psyllid ID: psy16261

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVYL
Secondary Structure (PSIPRED)
cEEEcccEEEEcccccEEEEEEEEEEcccEEEEEEcccEEEEcccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cEEccccEEEccccccEEEEEEEEcccccEEEEEEccccEEEccccEEEEEEEcccEEEEEEEEEEEccHcccccEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcc
Coil and Loop (DISEMBL)
mivipsqligarlaapltldchvesypkpitfwthengslihegsryhmwteKFSSYKFYMRLYIGslsksdfgtykcnakntlggsegvIKVYNigyfgsdtqyvtdEEMQRTNQIARskwgsertNQIArskwgsgyrytsgpirlpdpsgdpvyl
Flexible Loop (DISEMBL)
mivipsqliGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKntlggsegvIKVYNIGYFGSDTQYVTDEEMQRTNqiarskwgsertnqiarskwgsgyrytsgpirlpdpsgdpvyl
Low Complexity Region (SEG)
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVYL
Disordered region (IsUnstruct)
**VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT***************************************************
Disordered Region (DISOPRED)
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI************************************************************YL
Disordered Region (DISEMBL)
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPD********
Disordered Region (DISPRO)
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF***********************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVYL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.575	0.253	0.270	6e-07
P15364	333	Protein amalgam OS=Drosop	no	N/A	0.481	0.228	0.324	5e-06
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.550	0.012	0.295	6e-06
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.588	0.266	0.242	1e-05
A2AAJ9	8891	Obscurin OS=Mus musculus	no	N/A	0.569	0.010	0.3	1e-05
Q810U4	1256	Neuronal cell adhesion mo	no	N/A	0.430	0.054	0.350	2e-05
Q92823	1304	Neuronal cell adhesion mo	no	N/A	0.430	0.052	0.350	2e-05
P97686	1214	Neuronal cell adhesion mo	yes	N/A	0.430	0.056	0.337	3e-05
P0C5E3	603	Palladin (Fragment) OS=Ra	no	N/A	0.417	0.109	0.371	3e-05
P35331	1284	Neuronal cell adhesion mo	no	N/A	0.430	0.052	0.337	5e-05

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           +I +P   +G  L   + L+CH+E+YP P   WT ++   I   +  H     F++   Y
Sbjct: 227 VITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDD---IQLANNQHYSISHFATADEY 283

Query: 61  M--RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
               L + ++ K  +G Y C A N  G +E  + ++
Sbjct: 284 TDSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLF 319

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.
Drosophila melanogaster (taxid: 7227)

>sp|P15364|AMAL_DROME Protein amalgam OS=Drosophila melanogaster GN=Ama PE=2 SV=2

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 19  LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
           L+C V+ YP P   W H+NG  +     + +     SS      L I S+ + DFG Y C
Sbjct: 249 LECSVQGYPAPTVVW-HKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDYYC 307

Query: 79  NAKNTLGGSEGVIKVYN 95
           NA N LG ++  + ++ 
Sbjct: 308 NATNKLGHADARLHLFQ 324

Drosophila melanogaster (taxid: 7227)

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L ++CH+E+ P+P   W H +G+L+    R            +   L I   +  D G Y
Sbjct: 21  LLMECHLEADPQPTIAWQH-SGNLLEPSGRVVQTLTPLGGSLYKATLVIKEPNAGDGGAY 79

Query: 77  KCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
           KC A+N LG S   I +   G  G + +
Sbjct: 80  KCTARNQLGESNANINLNFAGAGGDEAK 107

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           +I +P   +G  L   + L+CHVE+YP P   W  +   L    ++++  +   ++ +F 
Sbjct: 224 VITVPRPRLGQALQYDMDLECHVEAYPPPAITWLKDETVL--SNNQHYSISHFATADEFT 281

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95
               + ++ K  +G Y+C A N LG +   ++++ 
Sbjct: 282 DTTRVITIEKRQYGKYQCKAANKLGEAREEVELFE 316

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 1    MIVIPSQLIGARLAAPLT------LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKF 54
            ++ +P + +    A P        + C VE  P P   W +++G+L+  G+RY M  E  
Sbjct: 7043 LVQVPPRFVNKVRATPFVEGEDAQITCTVEGAPYPQIRW-YKDGTLLAPGNRYRMLNEPR 7101

Query: 55   SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            S     + L I + SK D G Y+C   N LG + G  ++Y
Sbjct: 7102 SGV---LVLVIQAASKEDLGHYECELVNRLGSTRGGGELY 7138

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L+L+C  E  P PI +W  E+G L    + Y           F   L I  +S++D G Y
Sbjct: 282 LSLECIAEGLPTPIIYWIKEDGMLPANRTFYR---------NFKKTLQITHVSEADSGNY 332

Query: 77  KCNAKNTLGGSEGVIKV 93
           +C AKN LG     I V
Sbjct: 333 QCIAKNALGAVHHTISV 349

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Mus musculus (taxid: 10090)

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L+L+C  E  P PI +W  E+G L    + Y           F   L I  +S++D G Y
Sbjct: 288 LSLECIAEGLPTPIIYWAKEDGMLPKNRTVYK---------NFEKTLQIIHVSEADSGNY 338

Query: 77  KCNAKNTLGGSEGVIKV 93
           +C AKN LG     I V
Sbjct: 339 QCIAKNALGAIHHTISV 355

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Homo sapiens (taxid: 9606)

>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule OS=Rattus norvegicus GN=Nrcam PE=1 SV=2

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L+L+C  E  P P+ +W  E+G+L    + Y           F   L I  +S++D G Y
Sbjct: 288 LSLECIAEGLPTPVIYWIKEDGTLPVNRTFYR---------NFKKTLQIIHVSEADSGNY 338

Query: 77  KCNAKNTLGGSEGVIKV 93
           +C AKN LG     I V
Sbjct: 339 QCIAKNALGAVHHTISV 355

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Rattus norvegicus (taxid: 10116)

>sp|P0C5E3|PALLD_RAT Palladin (Fragment) OS=Rattus norvegicus GN=Palld PE=2 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           P+ L+C V   P P  FW  EN SL H   R  M  +       Y+ L I   +K D G 
Sbjct: 527 PVRLECRVSGVPPPQIFWKKENESLTHSTDRVSMHQDNHG----YICLLIQGATKEDAGW 582

Query: 76  YKCNAKNTLG 85
           Y  +AKN  G
Sbjct: 583 YTVSAKNEAG 592

Cytoskeletal protein required for organization of normal actin cytoskeleton. Roles in establishing cell morphology, motility, cell adhesion and cell-extracellular matrix interactions in a variety of cell types. May function as a scaffolding molecule with the potential to influence both actin polymerization and the assembly of existing actin filaments into higher-order arrays. Binds to proteins that bind to either monomeric or filamentous actin. Localizes at sites where active actin remodeling takes place, such as lamellipodia and membrane ruffles. Different isoforms may have functional differences. Plays a role in neurite outgrowth and in the establishment of polarity during neuronal morphogenesis. Participates in the acquisition of the reactive astrocyte morphology.

Rattus norvegicus (taxid: 10116)

>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule OS=Gallus gallus PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L L+C     P P+  W  E G L    + +           F   L I  +S++D G Y
Sbjct: 264 LLLECIAAGLPTPVIRWIKEGGELPANRTFFE---------NFKKTLKIIDVSEADSGNY 314

Query: 77  KCNAKNTLGGSEGVIKV 93
           KC A+NTLG +  VI V
Sbjct: 315 KCTARNTLGSTHHVISV 331

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Specifically involved in the development of optic fibres in the retina.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
357620070	383	hypothetical protein KGM_15280 [Danaus p	0.797	0.328	0.382	1e-19
241622079	273	lachesin, putative [Ixodes scapularis] g	0.639	0.369	0.435	1e-19
195047264	394	GH24280 [Drosophila grimshawi] gi|193893	0.943	0.378	0.345	2e-19
195173782	286	GL15980 [Drosophila persimilis] gi|19411	0.810	0.447	0.358	1e-18
198470348	292	GA22895 [Drosophila pseudoobscura pseudo	0.810	0.438	0.358	1e-18
328709297	351	PREDICTED: hemicentin-2-like [Acyrthosip	0.594	0.267	0.447	2e-18
239790285	368	ACYPI006654 [Acyrthosiphon pisum]	0.594	0.255	0.447	3e-18
383851554	449	PREDICTED: neurotrimin-like [Megachile r	0.601	0.211	0.458	3e-18
242006982	740	predicted protein [Pediculus humanus cor	0.670	0.143	0.448	3e-18
340712175	419	PREDICTED: neurotrimin-like, partial [Bo	0.601	0.226	0.458	3e-18

>gi|357620070|gb|EHJ72393.1| hypothetical protein KGM_15280 [Danaus plexippus]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 2/128 (1%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           ++ +P+QL+GA     +TL CHVE+ PK I +WT ENG +I    +Y M     S+Y   
Sbjct: 218 LVQVPNQLVGAPTGTDVTLQCHVEASPKAINYWTRENGEMIISNDKYEMSEINSSAYSVQ 277

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY--NIGYFGSDTQYVTDEEMQRTNQIA 118
           MRL I ++ ++D G YKC +KN++G +EG I++Y   + Y  +      D E++ TN + 
Sbjct: 278 MRLVIRNIQRNDLGGYKCISKNSIGDAEGNIRLYEMELPYRKTRLDDERDSELEETNDVR 337

Query: 119 RSKWGSER 126
            S  GS R
Sbjct: 338 SSLQGSLR 345

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241622079|ref|XP_002408881.1| lachesin, putative [Ixodes scapularis] gi|215503058|gb|EEC12552.1| lachesin, putative [Ixodes scapularis]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 67/101 (66%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           MI IP+QL+GA +   +TLDC++ES+PK +T+WT    ++IH+ ++Y + T + + YK  
Sbjct: 165 MIWIPNQLVGASVETDVTLDCNLESHPKSVTYWTRNTDTIIHQNAKYSVLTVQHAMYKVQ 224

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGS 101
           M+L +  L   DFG Y C AKN+LG +EG IK+Y   +  S
Sbjct: 225 MQLVVRRLKPEDFGEYHCVAKNSLGETEGTIKLYGKFFLSS 265

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195047264|ref|XP_001992305.1| GH24280 [Drosophila grimshawi] gi|193893146|gb|EDV92012.1| GH24280 [Drosophila grimshawi]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           ++ +P+QL+GA +   +TL C+VE+ PK I +W  ENG +I  G RY +  ++ + Y   
Sbjct: 130 LVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGERYALTEKEHNMYSIE 189

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIA-- 118
           M L+I  L  SDFG YKC +KN++G +EG I++Y +   G   Q   D      N++   
Sbjct: 190 MILHIRRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKNQREEDLNEVTKNEVVVK 249

Query: 119 --RSKWGSERTN------QIARSKWGSGYRYTSGPIRLP 149
             RS+ GS   N      +   +  GSG    +GP  +P
Sbjct: 250 DNRSEDGSRNQNGRLYKDRSQAADVGSGALSRNGPGTMP 288

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195173782|ref|XP_002027665.1| GL15980 [Drosophila persimilis] gi|194114600|gb|EDW36643.1| GL15980 [Drosophila persimilis]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           ++ +P+QL+GA +   +TL C+VE+ PK I +W  ENG +I  G RY +  ++ + Y   
Sbjct: 35  LVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKEHNMYSME 94

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFG------SDTQYVTDEEMQRT 114
           M L+I  L  SDFG YKC +KN++G +EG I++Y +   G       D   VT  E++  
Sbjct: 95  MVLHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGRKQMRDDDINEVTRHEVENR 154

Query: 115 NQIARSKWGSERTN 128
           ++  R + G+   N
Sbjct: 155 HKENRHEEGARNQN 168

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198470348|ref|XP_002133435.1| GA22895 [Drosophila pseudoobscura pseudoobscura] gi|198145408|gb|EDY72063.1| GA22895 [Drosophila pseudoobscura pseudoobscura]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           ++ +P+QL+GA +   +TL C+VE+ PK I +W  ENG +I  G RY +  ++ + Y   
Sbjct: 35  LVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKEHNMYSME 94

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFG------SDTQYVTDEEMQRT 114
           M L+I  L  SDFG YKC +KN++G +EG I++Y +   G       D   VT  E++  
Sbjct: 95  MVLHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGRKQMRDDDINEVTRHEVENR 154

Query: 115 NQIARSKWGSERTN 128
           ++  R + G+   N
Sbjct: 155 HKENRHEEGARNQN 168

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709297|ref|XP_001949888.2| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWT-HENGSLIHEGSRYHMWTEKFSSYKFY 60
           +V+P+QL+GA L   +T+DC  E+YP+PI+FW+  E  ++I  G +YH+ T++ + YK +
Sbjct: 232 LVVPNQLVGAPLGTDVTIDCQTEAYPRPISFWSFQEFRNMIFSGPKYHIVTDE-NGYKTH 290

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
           M+L I SLS  D+G+Y+C  KN+LG +EG +++Y I
Sbjct: 291 MKLTIRSLSPEDYGSYRCVTKNSLGEAEGSMRIYEI 326

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790285|dbj|BAH71713.1| ACYPI006654 [Acyrthosiphon pisum]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWT-HENGSLIHEGSRYHMWTEKFSSYKFY 60
           +V+P+QL+GA L   +T+DC  E+YP+PI+FW+  E  ++I  G +YH+ T++ + YK +
Sbjct: 232 LVVPNQLVGAPLGTDVTIDCQTEAYPRPISFWSFQEFRNMIFSGPKYHIVTDE-NGYKTH 290

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
           M+L I SLS  D+G+Y+C  KN+LG +EG +++Y I
Sbjct: 291 MKLTIRSLSPEDYGSYRCVTKNSLGEAEGSMRIYEI 326

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851554|ref|XP_003701297.1| PREDICTED: neurotrimin-like [Megachile rotundata]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           MI I +QL+GA+    +TL+CH E++PK I +WT EN  +I  G +Y       ++YK  
Sbjct: 233 MISIQNQLVGAQEGQKMTLECHSEAFPKSINYWTKENNEIIKTGEKYEQSVTD-NAYKIQ 291

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
           M+L I S+++SD+GTYKC +KN+LG ++G IK+Y+I
Sbjct: 292 MKLTIFSVTQSDYGTYKCISKNSLGETDGNIKLYHI 327

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006982|ref|XP_002424321.1| predicted protein [Pediculus humanus corporis] gi|212507721|gb|EEB11583.1| predicted protein [Pediculus humanus corporis]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           MI I +QL+GA     +TL+CH E+YPK I +WT + G +I +G++Y       ++YK +
Sbjct: 220 MIWIQNQLVGAFEGQEVTLECHSEAYPKSINYWTGDRGDIIAQGNKYEPQLVD-NAYKVH 278

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
           M+L I S+S SDFGTYKC +KN+LG ++G IK+Y++  F    + VT
Sbjct: 279 MKLIIKSVSASDFGTYKCVSKNSLGHTDGSIKLYHVPEFVGPIKNVT 325

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712175|ref|XP_003394639.1| PREDICTED: neurotrimin-like, partial [Bombus terrestris]

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           MI I +QL+GA+    +TL+C+ E++PK I +WT EN  +I  G +Y+  T  ++ YK +
Sbjct: 201 MISIQNQLVGAQEGQRMTLECNSEAFPKSINYWTKENNEIIKNGEKYNQ-TFSYNEYKVH 259

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
           M+L I S+  SD+GTYKC +KN+LG ++G IK+Y+I
Sbjct: 260 MKLTISSVEMSDYGTYKCISKNSLGETDGSIKLYHI 295

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.797	0.227	0.358	6.2e-18
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.594	0.201	0.431	1.3e-15
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.506	0.212	0.325	7.4e-08
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.575	0.253	0.270	5e-07
FB|FBgn0000071	333	Ama "Amalgam" [Drosophila mela	0.575	0.273	0.319	5.6e-07
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.474	0.008	0.337	1.3e-05
UNIPROTKB|D6RBN8	152	FGFRL1 "Fibroblast growth fact	0.455	0.473	0.349	1.5e-05
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.512	0.039	0.345	2.1e-05
ZFIN|ZDB-GENE-000209-4	1419	robo3 "roundabout homolog 3" [	0.493	0.054	0.357	0.00011
UNIPROTKB|F1P0G8	1089	PALLD "Uncharacterized protein	0.474	0.068	0.329	0.00017

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 48/134 (35%), Positives = 79/134 (58%)

Query:     1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             ++ +P+QL+GA +   +TL C+VE+ PK I +W  ENG +I  G RY +  ++ + Y   
Sbjct:   312 LVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDRYALTEKENNMYAIE 371

Query:    61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRT--NQIA 118
             M L+I  L  SDFG YKC +KN++G +EG I++Y +   G   + + D+++     N++ 
Sbjct:   372 MILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGK--KILRDDDLNEVSKNEVV 429

Query:   119 ----RSKWGSERTN 128
                 RS+ GS   N
Sbjct:   430 QKDTRSEDGSRNLN 443

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/95 (43%), Positives = 57/95 (60%)

Query:     1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWT-EKFSSYKF 59
             M+ IP QL+G  +   +TL+C +E+ P  + +WT EN  +I E S+Y   T     SYK 
Sbjct:   254 MVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKTETIPGHPSYKA 313

Query:    60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
              MRL I ++  SD+G YKC AKN  G  +G IK+Y
Sbjct:   314 TMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLY 348

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query:    13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
             L   LTL+C  ES P  + FW  ++  L+  GS   +  +    ++  MR+ +  ++K D
Sbjct:   244 LGQKLTLECITESQPASVNFWLRDS-QLLQGGSYESVSVDHV--FRIVMRITLRPITKRD 300

Query:    73 FGTYKCNAKNTLGGSEGVIKVYN 95
             FG Y C AKN +G ++ +I V++
Sbjct:   301 FGEYICRAKNAMGQTDRIITVHH 323

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:     1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +I +P   +G  L   + L+CH+E+YP P   WT ++   I   +  H     F++   Y
Sbjct:   227 VITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDD---IQLANNQHYSISHFATADEY 283

Query:    61 M--RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
                 L + ++ K  +G Y C A N  G +E  + ++
Sbjct:   284 TDSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLF 319

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0000071 Ama "Amalgam" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 30/94 (31%), Positives = 46/94 (48%)

Query:     2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             I +    I   ++    L+C V+ YP P   W H+NG  + + SR+H      SS     
Sbjct:   232 IAVQRPKIAQMVSHSAELECSVQGYPAPTVVW-HKNGVPL-QSSRHHEVANTASSSGTTT 289

Query:    62 R-LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
               L I S+ + DFG Y CNA N LG ++  + ++
Sbjct:   290 SVLRIDSVGEEDFGDYYCNATNKLGHADARLHLF 323

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007155 "cell adhesion" evidence=NAS

GO:0003823 "antigen binding" evidence=NAS

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query:    17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
             L  +C V + P P   W H NG+ + E  R+ +  +K   + ++  L I +++  D G Y
Sbjct:   136 LLFECRVNADPIPAIIWFH-NGAAVKESERHKITVDK-DVHSYFATLEILNVTVEDAGKY 193

Query:    77 KCNAKNTLGGSEGVIKV 93
             K NAKN LG S   I +
Sbjct:   194 KVNAKNELGESNATISL 210

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|D6RBN8 FGFRL1 "Fibroblast growth factor receptor-like 1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 29/83 (34%), Positives = 40/83 (48%)

Query:     3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
             V+P Q+  ARL   + L C VE  P P+T WT ++G  IH G     W+ +F        
Sbjct:    35 VVPRQV--ARLGRTVRLQCPVEGDPPPLTMWT-KDGRTIHSG-----WS-RFRVLP--QG 83

Query:    63 LYIGSLSKSDFGTYKCNAKNTLG 85
             L +  + + D G Y C A N  G
Sbjct:    84 LKVKQVEREDAGVYVCKATNGFG 106

GO:0001501 "skeletal system development" evidence=IEA

GO:0003179 "heart valve morphogenesis" evidence=IEA

GO:0005007 "fibroblast growth factor-activated receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0017134 "fibroblast growth factor binding" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060539 "diaphragm development" evidence=IEA

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query:     9 IGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGS 67
             I +R   P+TLDCH +   +PIT  WT  NG +     R+ +  E  +      +L IG 
Sbjct:   787 ISSRRNDPVTLDCHAKG-DEPITIGWTQNNGRIDLNNFRFSI-AEMKTEKGVDSQLTIGH 844

Query:    68 LSKSDFGTYKCNAKNTLGGSEGVI 91
               + D G Y+C A+N  G +E +I
Sbjct:   845 SDRHDSGVYRCIAENPYGRAEQII 868

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

ZFIN|ZDB-GENE-000209-4 robo3 "roundabout homolog 3" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 30/84 (35%), Positives = 42/84 (50%)

Query:     5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYM 61
             PS LI ++   P TL+C  E  P P+  W +++G  +    E  R H       S  F++
Sbjct:    69 PSDLIVSK-GEPATLNCKAEGRPTPMVEW-YKDGERVETDREDPRSHRMLLPSGSL-FFL 125

Query:    62 RLYIGSLSKSDFGTYKCNAKNTLG 85
             R+  G  SK D G Y C A+N LG
Sbjct:   126 RIVHGRRSKPDEGVYVCVARNYLG 149

GO:0005515 "protein binding" evidence=IPI

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0071679 "commissural neuron axon guidance" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0048675 "axon extension" evidence=IMP

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI;IMP

UNIPROTKB|F1P0G8 PALLD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 0.00017, P = 0.00017
 Identities = 26/79 (32%), Positives = 35/79 (44%)

Query:     7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
             Q  G     P+ L+C +   P P  FW  EN S+ H   R  M  + +     Y+ L I 
Sbjct:   947 QNTGVTEGFPVRLECRISGEPSPQIFWKKENESITHNTDRVSMHQDNYG----YICLLIQ 1002

Query:    67 SLSKSDFGTYKCNAKNTLG 85
               +K D G Y  +AKN  G
Sbjct:  1003 GATKEDAGWYTVSAKNEAG 1021

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-12
smart00409	85	smart00409, IG, Immunoglobulin	3e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-08
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	1e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	1e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-04

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C     P P   W  + G L+ E  R+ +     +S      L I +++  D GT
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST-----LTISNVTPEDSGT 65

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y C A N+ G +     + 
Sbjct: 66 YTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C     P P   W  + G L+ E  R+ +     +S      L I +++  D GT
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST-----LTISNVTPEDSGT 65

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y C A N+ G +     + 
Sbjct: 66 YTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
               + +  +        C V   P P   W   +G  +    R+ +  E  +      
Sbjct: 3  FTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLRSSDRFKVTYEGGTY----- 56

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           L I ++   D G Y C A N+ G +E   ++
Sbjct: 57 TLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
          L L+C  E  P P   W    G L           ++     F   L I ++S+ D G Y
Sbjct: 1  LLLECIAEGLPTPEISWIKIGGELP---------ADRTKFENFNKTLKIDNVSEEDDGEY 51

Query: 77 KCNAKNTLGGSEGVIKV 93
          +C A N+LG +   I V
Sbjct: 52 RCTASNSLGSARHTISV 68

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 46.7 bits (110), Expect = 8e-08
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
          +TL C     P P   W      L          +   SS      L I +++  D GTY
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSST--LTISNVTLEDSGTY 58

Query: 77 KCNAKNTLGGSEGVIK 92
           C A N+ G     + 
Sbjct: 59 TCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
          L+C V   P P  FW  EN SL H   R  M  +       Y+ L I   +K D G Y  
Sbjct: 3  LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG----YICLLIQGATKEDAGWYTV 58

Query: 79 NAKNTLG 85
          +AKN  G
Sbjct: 59 SAKNEAG 65

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C  E  P P   W   +G  + E +R+               L I S+S  D G 
Sbjct: 4  SVTLTCPAEGNPVPNITWLK-DGKPLPESNRFVASGS---------TLTIKSVSLEDSGL 53

Query: 76 YKCNAKNTLG 85
          Y C A+N+ G
Sbjct: 54 YTCVAENSAG 63

Length = 63

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
          A L   +TL C  + +P+P   WT ++G  I  G   + + E  S       + I  + K
Sbjct: 15 ANLGQSVTLACDADGFPEPTMTWT-KDGEPIESGEEKYSFNEDGS------EMTILDVDK 67

Query: 71 SDFGTYKCNAKNTLGGSEGVI--KVY 94
           D   Y C A+N  G  E  I  KV+
Sbjct: 68 LDEAEYTCIAENKAGEQEAEIHLKVF 93

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
          L+C V + P P  FW   N  L +   R  ++ +        + L I + +K D G Y  
Sbjct: 3  LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG----RICLLIQNANKEDAGWYTV 58

Query: 79 NAKNTLG 85
          +A N  G
Sbjct: 59 SAVNEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
             C V   P P   W  E+G L     R  +  +K         L I +++  D G+Y 
Sbjct: 2  EFQCEVGGDPVPTVLWRKEDGEL--PKGRAEILDDK--------SLKIRNVTAGDEGSYT 51

Query: 78 CNAKNTLGGSE 88
          C A+N +G  E
Sbjct: 52 CEAENMVGKIE 62

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
          +TL C V   P+    W  E   L               +    + L I +++  D GTY
Sbjct: 4  VTLTCSVSGPPQVDVTWFKEGKGLEES-----TTVGTDENRVSSITLTISNVTPEDSGTY 58

Query: 77 KCNA 80
           C  
Sbjct: 59 TCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
          ++C  ++ PKP   W+ +   L+   SR  +W +          L I +++KSD G Y C
Sbjct: 6  IECKPKAAPKPTISWS-KGTELLTNSSRICIWPDG--------SLEILNVTKSDEGKYTC 56

Query: 79 NAKNTLGGSEG 89
           A+N  G +  
Sbjct: 57 FAENFFGKANS 67

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-----SLIHEGSRYHMWTEKFSSYKF 59
          PS LI      P TL+C  E  P P   W  +NG           S   +     S   F
Sbjct: 8  PSDLI-VSKGDPATLNCKAEGRPTPTIQW-LKNGQPLETDKDDPRSHRIVLP---SGSLF 62

Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLG 85
          ++R+  G   +SD G Y C A N+LG
Sbjct: 63 FLRVVHGRKGRSDEGVYVCVAHNSLG 88

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 27/95 (28%)

Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMR 62
          PS ++  R   P+ L+C  E  P P   W  ++G L++  S  R                
Sbjct: 6  PSDIVAVR-GGPVVLNCSAEGEPPPKIEWK-KDGVLLNLVSDERRQQLPN---------- 53

Query: 63 LYIGSL----------SKSDFGTYKCNAKNTLGGS 87
             GSL          +K D G Y+C A+N   GS
Sbjct: 54 ---GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.84
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.78
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.76
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.76
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.76
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.76
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.75
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.75
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.75
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.74
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.73
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.72
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.72
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.72
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.72
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.71
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.71
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.71
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.7
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.7
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.69
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.69
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.69
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.68
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.68
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.68
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.67
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.67
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.66
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.66
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.66
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.66
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.66
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.65
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.64
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.64
KOG3513|consensus	1051		99.64
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.64
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.64
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.64
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.64
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.64
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.63
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.63
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.63
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.63
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.62
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.62
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.61
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.61
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.6
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.6
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.6
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.6
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.6
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.6
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.59
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.59
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.58
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.57
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.57
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.55
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.54
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.54
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.53
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.53
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.53
KOG3513|consensus	1051		99.53
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.51
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.51
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.49
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.48
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.47
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.46
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.46
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.45
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.45
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.44
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.44
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.44
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.43
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.43
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.4
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.4
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.39
KOG4194|consensus	873		99.37
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.33
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.32
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.28
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.27
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.26
KOG4221|consensus	1381		99.26
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.26
smart00409	86	IG Immunoglobulin.	99.26
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.25
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.21
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.15
KOG4222|consensus	1281		99.12
PHA02826	227	IL-1 receptor-like protein; Provisional	99.12
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.1
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.1
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.09
PHA02785	326	IL-beta-binding protein; Provisional	99.06
KOG4221|consensus	1381		99.05
PHA02785	326	IL-beta-binding protein; Provisional	99.05
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.05
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.01
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.98
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.95
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.94
PHA02826	227	IL-1 receptor-like protein; Provisional	98.94
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.92
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.92
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.92
KOG4194|consensus	873		98.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.87
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.83
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.83
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.82
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.81
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.79
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.76
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.73
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.71
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.68
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.68
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.67
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.66
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.61
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.61
KOG4222|consensus	1281		98.6
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.59
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.58
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.53
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.51
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.5
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.49
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.49
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.46
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.45
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.45
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.44
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.43
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.41
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.4
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.33
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.3
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.3
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.28
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.25
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.24
smart00407	75	IGc1 Immunoglobulin C-Type.	98.23
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.23
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.21
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.18
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.17
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.12
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.06
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.05
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.05
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.99
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.98
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.92
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.86
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.8
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.8
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.77
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.76
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.76
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.74
smart00406	81	IGv Immunoglobulin V-Type.	97.72
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.72
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.69
PHA03376	221	BARF1; Provisional	97.66
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.62
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.52
PHA02633	63	hypothetical protein; Provisional	97.38
KOG3515|consensus	741		97.25
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.24
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.22
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.09
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.01
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.9
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.88
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.82
KOG1480|consensus	909		96.47
KOG4597|consensus	560		96.22
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	96.05
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	95.74
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.33
PHA02982	251	hypothetical protein; Provisional	95.2
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.7
PHA03042	286	CD47-like protein; Provisional	94.64
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.28
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	94.08
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.74
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.26
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	93.25
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	92.79
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	91.83
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	91.82
PHA02865	338	MHC-like TNF binding protein; Provisional	91.7
PHA03052	69	Hypothetical protein; Provisional	91.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	91.29
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	91.18
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	90.88
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	90.21
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	89.65
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	88.29
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	88.02
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	87.93
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	87.73
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	87.53
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	87.2
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	86.76
PHA02914	500	Immunoglobulin-like domain protein; Provisional	86.26
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	85.91
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	85.32
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	85.32
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	85.17
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	85.15
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	84.95
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	84.87
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	84.63
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	84.08
KOG3515|consensus	741		84.07
PHA03269	566	envelope glycoprotein C; Provisional	83.97
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	83.93
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	83.9
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	83.68
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	83.55
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	83.45
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	83.24
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	82.87
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	82.79
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	82.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	82.35
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	81.86
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	81.23
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	81.23
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	80.15
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	80.02
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	80.02

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.84  E-value=2.3e-19  Score=111.46  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=82.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...++.+.+..|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+....     ..+.|.|.++.++|+|.|+|.|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd-g~~l~~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF-RKQIQEGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             eEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC-CEEecCCCcEEEEecC-----CeeEEEECCCChhhCEEEEEEEE
Confidence            45677788899999999999999999999999999 8888777777665433     12479999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |.+|...+.+.|.|.+.|.+|
T Consensus        77 N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          77 NKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             cCCCceeEEEEEEEecCCCCC
Confidence            999999999999999987655

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.78  E-value=9.4e-18  Score=103.06  Aligned_cols=89  Identities=24%  Similarity=0.326  Sum_probs=73.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +...|..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....+.    .++|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~   78 (92)
T cd05737           4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKN-DQALALSDHYNVKVEQGK----YASLTIKGVSSEDSGKYGIVVK   78 (92)
T ss_pred             eccCCceEEEeCCCcEEEEEEEEecCCCeEEEEEC-CEECccCCCEEEEEcCCC----EEEEEEccCChhhCEEEEEEEE
Confidence            34456778899999999999999999999999999 888776666665533211    2379999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy16261         82 NTLGGSEGVIKVYN   95 (158)
Q Consensus        82 n~~g~~~~~~~l~v   95 (158)
                      |.+|.....+.|.|
T Consensus        79 N~~G~~~~~~~v~v   92 (92)
T cd05737          79 NKYGGETVDVTVSV   92 (92)
T ss_pred             ECCCcceEEEEEeC
Confidence            99999988887754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.76  E-value=6e-18  Score=99.49  Aligned_cols=73  Identities=26%  Similarity=0.507  Sum_probs=64.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      |+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+...+        +|.|.+++.+|.|.|+|.|.|..|.......|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~-~~~l~~~~r~~~~~~g--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKG-TELLVNNSRISIWDDG--------SLEILNITKLDEGSYTCFAENNRGKANSTGVL   71 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeC-CEecccCCCEEEcCCC--------EEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence            67899999999999999999999 7777667777776555        79999999999999999999999999888877


Q ss_pred             EE
Q psy16261         94 YN   95 (158)
Q Consensus        94 ~v   95 (158)
                      .|
T Consensus        72 ~~   73 (73)
T cd05852          72 SV   73 (73)
T ss_pred             EC
Confidence            54

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.76  E-value=1.2e-17  Score=101.72  Aligned_cols=85  Identities=25%  Similarity=0.318  Sum_probs=70.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |.+.+....+.+|+.+.|.|.+.|.|.|.++|+++ +..+....++... .        +.|.|.+++.+|.|.|+|.|.
T Consensus         4 i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~-~--------~~L~I~~v~~~D~G~Y~C~A~   73 (88)
T cd05851           4 INVKFKDTYALKGQNVTLECFALGNPVPVIRWRKI-LEPMPATAEISMS-G--------AVLKIFNIQPEDEGTYECEAE   73 (88)
T ss_pred             eEEccccEEEeCCCcEEEEEEecccCCCEEEEEEC-CcCCCCCCEEecC-C--------CEEEECcCChhhCEEEEEEEE
Confidence            45666777889999999999999999999999999 6665544443221 1        269999999999999999999


Q ss_pred             cCCCceEEEEEEEEe
Q psy16261         82 NTLGGSEGVIKVYNI   96 (158)
Q Consensus        82 n~~g~~~~~~~l~v~   96 (158)
                      |..|.....+.|.|+
T Consensus        74 N~~G~~~~~~~l~V~   88 (88)
T cd05851          74 NIKGKDKHQARVYVQ   88 (88)
T ss_pred             cCCCceEEEEEEEEC
Confidence            999999998888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.76  E-value=3.6e-17  Score=99.61  Aligned_cols=86  Identities=22%  Similarity=0.338  Sum_probs=70.4

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      |+.+.|.|.+.|.|.+.+.|+++ +..+... .++.+.... ......+.|.|.++...|+|.|+|.|.|.+|...+.+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~-~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKE-DRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeC-CEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence            78899999999999999999999 7766543 466555432 12234568999999999999999999999999999999


Q ss_pred             EEEeccCCC
Q psy16261         93 VYNIGYFGS  101 (158)
Q Consensus        93 l~v~~~~~~  101 (158)
                      |.|...|..
T Consensus        79 L~V~~~P~~   87 (88)
T cd05735          79 LTVQEPPDP   87 (88)
T ss_pred             EEEeCCCCC
Confidence            999887644

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.76  E-value=6.1e-18  Score=99.78  Aligned_cols=74  Identities=26%  Similarity=0.511  Sum_probs=63.4

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      +|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.+...+        .|.|.+++.+|.|.|+|.|.|.+|.....+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   71 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKG-GSQLSVDRRHLVLSSG--------TLRISRVALHDQGQYECQAVNIVGSQRTVAQ   71 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEEC-CEECCCCCCeEEccCC--------eEEEeeCCHHhCEEEEEEEEeCCCceeEEEE
Confidence            589999999999999999999999 7777655555444433        7999999999999999999999999988888


Q ss_pred             EEE
Q psy16261         93 VYN   95 (158)
Q Consensus        93 l~v   95 (158)
                      |.|
T Consensus        72 L~V   74 (74)
T cd05745          72 LTV   74 (74)
T ss_pred             EeC
Confidence            754

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.75  E-value=5.2e-17  Score=98.48  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=68.5

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.+....     ..+.|.|.++.++|+|.|+|.|.|.+|.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G~   77 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRG-DKAFTETEGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVGE   77 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEEC-CEECccCCCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence            45688999999999999999999999999 7777543 466554432     1347999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ..+.+.|.|
T Consensus        78 ~~~~~~l~V   86 (86)
T cd05894          78 DHASLFVKV   86 (86)
T ss_pred             EEEEEEEEC
Confidence            988888764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.75  E-value=7.5e-17  Score=100.49  Aligned_cols=90  Identities=24%  Similarity=0.294  Sum_probs=70.6

Q ss_pred             CceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+.+.+.+|+.+.|.|.+.| .|.|.+.|+|+ +..+.......+...........+.|.|..+..+|+|.|+|.|.|..
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            34677899999999999999 89999999999 88776544332222110112234589999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                      |..+..+.|.|.
T Consensus        89 G~~~~t~~L~V~  100 (101)
T cd04975          89 ASKSLTFELYVN  100 (101)
T ss_pred             ccEEEEEEEEEE
Confidence            999998888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.75  E-value=7.8e-17  Score=98.55  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..+++...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+............     ..+.|.|.++..+|.|.|+|.|.
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~-g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~g~Y~C~A~   76 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIA-GLIVIQTRTDTLETTV-----DIYNLQLSNITSETQTTVTCTAE   76 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEEC-CEEccCCccEEEEecC-----CEEEEEEecCCcccCEEEEEEEE
Confidence            44567777799999999999999999999999999 7666444332121111     23479999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy16261         82 NTLGGSEGVIKVYN   95 (158)
Q Consensus        82 n~~g~~~~~~~l~v   95 (158)
                      |..|...+.+.|.|
T Consensus        77 N~~G~~~~~~~L~v   90 (90)
T cd04972          77 NPVGQANVSVQVTV   90 (90)
T ss_pred             CCCCceeEEEEEeC
Confidence            99999988888753

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.74  E-value=1.4e-16  Score=97.85  Aligned_cols=85  Identities=20%  Similarity=0.397  Sum_probs=71.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTE-----YKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             cccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcC-----CeeEEEECCCCcccCEeEEEEEEc
Confidence            3456678899999999999999999999999999 7777666666665432     124799999999999999999999


Q ss_pred             CCCceEEEEEE
Q psy16261         83 TLGGSEGVIKV   93 (158)
Q Consensus        83 ~~g~~~~~~~l   93 (158)
                      ..|.....+.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.73  E-value=8.4e-17  Score=94.14  Aligned_cols=71  Identities=25%  Similarity=0.535  Sum_probs=60.7

Q ss_pred             CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      ++.|.|.+.|.|.|.++|+++ +..+....++.+...+        .|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~-g~~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKN-GDMVIPSDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEEC-CeECCCCCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999 7766666666665554        5888899999999999999999999998888754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.72  E-value=2.9e-16  Score=95.57  Aligned_cols=84  Identities=24%  Similarity=0.341  Sum_probs=68.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +...+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....... ...        +.|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~-~~~~~~~~~~~-~~~--------~~L~i~~v~~~D~G~Y~C~a~   73 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKV-DGSMPSSAEIS-MSG--------AVLKIPNIQFEDEGTYECEAE   73 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEEC-CCcCCCccEEE-EeC--------CEEEECCCCcccCEEEEEEEE
Confidence            45566777789999999999999999999999998 54443333332 122        279999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy16261         82 NTLGGSEGVIKVYN   95 (158)
Q Consensus        82 n~~g~~~~~~~l~v   95 (158)
                      |..|.......|.|
T Consensus        74 N~~G~~~~~~~l~V   87 (88)
T cd04968          74 NIKGKDTHQGRIYV   87 (88)
T ss_pred             ECCCcEEEEEEEEE
Confidence            99999988888866

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.72  E-value=9.8e-17  Score=97.09  Aligned_cols=82  Identities=24%  Similarity=0.362  Sum_probs=69.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..|....+..|+.+.|.|.+.|.|.|.+.|+++ +..+....++... .+        .|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~-~~--------~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVE-AG--------DLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEEC-CEECCCCCeEEEe-CC--------EEEEeeCCHHHCEEEEEEEECC
Confidence            356667789999999999999999999999999 7777666666543 22        6999999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy16261         84 LGGSEGVIKVYN   95 (158)
Q Consensus        84 ~g~~~~~~~l~v   95 (158)
                      .|...+.+.|.|
T Consensus        74 ~G~~~~~~~l~V   85 (85)
T cd05728          74 HGTIYASAELAV   85 (85)
T ss_pred             CCeEEEEEEEEC
Confidence            999988887754

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.72  E-value=7.1e-17  Score=94.93  Aligned_cols=73  Identities=27%  Similarity=0.549  Sum_probs=64.2

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....++.+...+        .|.|.+++.+|+|.|+|.|.|.+|.....+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~--------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKG-TELLTNSSRICIWPDG--------SLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEEC-CEEcccCCCEEECCCC--------eEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            67899999999999999999999 7777766777665544        79999999999999999999999999988887


Q ss_pred             EE
Q psy16261         94 YN   95 (158)
Q Consensus        94 ~v   95 (158)
                      .|
T Consensus        72 ~V   73 (73)
T cd04969          72 SV   73 (73)
T ss_pred             EC
Confidence            64

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=1.1e-16  Score=94.43  Aligned_cols=74  Identities=22%  Similarity=0.477  Sum_probs=60.8

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+.. ..++.+.....+    .++|.|.++..+|+|.|+|.|.|..|...+...|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~-~~~i~~~~~r~~~~~~~~g----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRN-NEMVQYNTDRISLYQDNSG----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEEC-CEECcCCCCeEEEEEcCCC----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999 777764 356666543311    136999999999999999999999999998888764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.72  E-value=3.2e-16  Score=96.86  Aligned_cols=89  Identities=22%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPK-PITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      .+.|....+..|+.+.|.|.+.|.|. |.+.|++.++..+.. ..++.+.... +   ..+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~-~---~~~~L~I~~v~~~D~G~YtC~A   79 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRND-D---YSSTLTIYNANIDDAGIYKCVV   79 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCC-C---CceEEEEeccChhhCEEEEEEE
Confidence            45566667899999999999999995 799999832665544 4455544332 1   1247999999999999999999


Q ss_pred             EcCC-CceEEEEEEEE
Q psy16261         81 KNTL-GGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~-g~~~~~~~l~v   95 (158)
                      .|.. |..++++.|.|
T Consensus        80 ~N~~~g~~~~s~~l~v   95 (96)
T cd05865          80 SNEDEGESEATVNVKI   95 (96)
T ss_pred             EcCCCCcEEEEEEEEE
Confidence            9997 87888887765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.71  E-value=2.6e-16  Score=96.62  Aligned_cols=88  Identities=25%  Similarity=0.367  Sum_probs=71.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...|..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++...... +.   .++|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~-~~---~~~L~I~~~~~~D~G~Y~C~a~N   79 (92)
T cd05891           5 GGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQ-GK---YASLTIKGVTSEDSGKYSINVKN   79 (92)
T ss_pred             ccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcC-CC---EEEEEECCCChhhCEEEEEEEEe
Confidence            3456778899999999999999999999999999 7766666555443322 11   24699999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy16261         83 TLGGSEGVIKVYN   95 (158)
Q Consensus        83 ~~g~~~~~~~l~v   95 (158)
                      .+|.....+.|.|
T Consensus        80 ~~G~~~~~~~v~~   92 (92)
T cd05891          80 KYGGETVDVTVSV   92 (92)
T ss_pred             CCCceeeEEEEEC
Confidence            9999998888754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=4.8e-16  Score=94.80  Aligned_cols=88  Identities=23%  Similarity=0.449  Sum_probs=76.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+..+.++.+....     ..+.|.|.++..+|+|.|+|.+.
T Consensus         3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEEE
T ss_pred             EEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEEE
Confidence            44566788899999999999999999999999999 8888888888776654     24589999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy16261         82 NTLGGSEGVIKVYN   95 (158)
Q Consensus        82 n~~g~~~~~~~l~v   95 (158)
                      |..|...+.+.|.|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            99999988888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.71  E-value=4.9e-16  Score=95.20  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +.+++..+.+.+|+.+.|.|.+.|.|. .+.|+++++..+..+.++.+...+     ..+.|.|.++..+|+|.|+|.|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-----~~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-----CeeEEEEecCChHHCEEEEEEEE
Confidence            346677788999999999999999998 899998647777666677665433     12379999999999999999999


Q ss_pred             cCCCce-EEEEEEEE
Q psy16261         82 NTLGGS-EGVIKVYN   95 (158)
Q Consensus        82 n~~g~~-~~~~~l~v   95 (158)
                      |..|.. ..++.|.+
T Consensus        77 N~~G~~~~~~i~l~~   91 (92)
T cd05866          77 DAKGQTQEATVVLEI   91 (92)
T ss_pred             cCCCcEEEEEEEEEE
Confidence            999986 55566543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.71  E-value=3.9e-16  Score=92.00  Aligned_cols=74  Identities=24%  Similarity=0.396  Sum_probs=62.3

Q ss_pred             CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      .+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKD-GKPLKLSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEEC-CEEcCCCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            378999999999999999999 8877666666665432     1347999999999999999999999999988888754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.70  E-value=6.7e-16  Score=96.27  Aligned_cols=88  Identities=19%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEee-cccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEK-FSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.+....... ...+...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kd-g~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKD-NRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEEC-CEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            45678899999999999999999999999 8877655432221110 011223458999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy16261         87 SEGVIKVYNI   96 (158)
Q Consensus        87 ~~~~~~l~v~   96 (158)
                      .+.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.70  E-value=2e-16  Score=93.40  Aligned_cols=74  Identities=28%  Similarity=0.482  Sum_probs=59.7

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+.. ..++.+.....    ....|.|.+++.+|+|.|+|.|.|..|..++...|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKE-NESLTHNTDRVSMHQDNC----GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEEC-CEECCCCCCeEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999999999999 666654 35665544321    1236999999999999999999999999998888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.69  E-value=4.6e-16  Score=92.19  Aligned_cols=72  Identities=29%  Similarity=0.510  Sum_probs=60.3

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV   90 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~   90 (158)
                      |+.+.|.|.+.|.|.|.++|+++ +..+...   .++.. ..+        .|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~-g~~i~~~~~~~~~~~-~~~--------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSIN-GAPIEGTDPDPRRHV-SSG--------ALILTDVQPSDTAVYQCEARNRHGNLLAN   70 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEEC-CEECCCCCCCceEEe-eCC--------EEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence            67899999999999999999999 7766543   23322 222        69999999999999999999999999888


Q ss_pred             EEEEE
Q psy16261         91 IKVYN   95 (158)
Q Consensus        91 ~~l~v   95 (158)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd05867          71 AHVHV   75 (76)
T ss_pred             EEEEE
Confidence            88876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=1e-15  Score=94.86  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=66.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |...+....+..|+.+.|.|.+.|.|.|.+.|+++ +..+...     .++.+....     ..+.|.|.+++.+|.|.|
T Consensus         5 i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~-~~~~~~~~~~~~~~~~v~~~~-----~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           5 ITYVENQTAMELEEQITLTCEASGDPIPSITWRTS-TRNISSEEKTLDGHIVVRSHA-----RVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             EEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEEC-CccccCCccccCccEEEEcCc-----cEEEEEEecCccCcCEEE
Confidence            34445444456689999999999999999999998 6554322     223222211     235799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy16261         77 KCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v   95 (158)
                      +|.|.|..|.....+.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999998888764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=7.9e-16  Score=94.97  Aligned_cols=82  Identities=28%  Similarity=0.524  Sum_probs=67.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.....+       +.|.|.+++.+|.|.|+|.|.|..|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~-g~~~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDG-------SEMTILDVDKLDEAEYTCIAENKAGE   83 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEEC-CEECcCCCCEEEEeCCC-------CEEEECCCChhhCEEEEEEEEcCCCe
Confidence            34678999999999999999999999999 7776554 444433222       26999999999999999999999999


Q ss_pred             eEEEEEEEEec
Q psy16261         87 SEGVIKVYNIG   97 (158)
Q Consensus        87 ~~~~~~l~v~~   97 (158)
                      ....+.|.|..
T Consensus        84 ~~~~~~L~V~~   94 (95)
T cd05730          84 QEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEEEe
Confidence            99888888753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.69  E-value=6.2e-16  Score=91.39  Aligned_cols=74  Identities=23%  Similarity=0.450  Sum_probs=59.8

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.++|+|+ +..+.. ..++.+.....+    ...|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKN-NEMLTYNTDRISLYQDNCG----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEEC-CEECCCCCCcEEEEEcCCC----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999 777764 356655433211    236999999999999999999999999998888754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.68  E-value=5.4e-16  Score=91.36  Aligned_cols=74  Identities=26%  Similarity=0.474  Sum_probs=61.9

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      |+.+.|.|.+.|.|.|.+.|+++++..+....++.....+        .|.|..+..+|+|.|+|.|.|..|.....+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--------TLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--------EEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999999999999997547776655555554444        79999999999999999999999998888777


Q ss_pred             EE
Q psy16261         94 YN   95 (158)
Q Consensus        94 ~v   95 (158)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            54

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.68  E-value=2.6e-16  Score=91.55  Aligned_cols=68  Identities=26%  Similarity=0.592  Sum_probs=59.0

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      +.|.|.+.|.|.|.++|+|+ +..+....++.+...+        .|.|.++..+|+|.|+|.|.|.+|..+..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKD-GVQVTESGKFHISPEG--------YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEEC-CEECCCCCCEEECCCC--------EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999999999999999999 7777666666665444        79999999999999999999999999887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.68  E-value=8.4e-16  Score=91.06  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....  ........        .|.|.+++..|.|.|+|.|.|..|...+.+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~-g~~i~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   71 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTN-GVPIEIAPTDPSRKVDGD--------TIIFSKVQERSSAVYQCNASNEYGYLLANA   71 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEEC-CEEccccCCCceEEecCC--------EEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence            67899999999999999999999 87775332  11111122        588999999999999999999999999998


Q ss_pred             EEEE
Q psy16261         92 KVYN   95 (158)
Q Consensus        92 ~l~v   95 (158)
                      .|.|
T Consensus        72 ~l~v   75 (76)
T cd05868          72 FVNV   75 (76)
T ss_pred             EEEe
Confidence            8876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.67  E-value=1.6e-15  Score=91.59  Aligned_cols=82  Identities=20%  Similarity=0.326  Sum_probs=64.5

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....+........    ....|.|.++..+|+|.|+|.|.|..|...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKN-GKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEEC-CEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            4577899999999999999999999999 77776543321111110    123699999999999999999999999999


Q ss_pred             EEEEEEE
Q psy16261         89 GVIKVYN   95 (158)
Q Consensus        89 ~~~~l~v   95 (158)
                      ..+.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            8888764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.67  E-value=1.8e-15  Score=89.84  Aligned_cols=76  Identities=22%  Similarity=0.343  Sum_probs=58.0

Q ss_pred             EEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        18 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      -|.|.+.|.|.|.++|+|+ +..+..+.++.............+.|.|.++...|+|.|+|.|+|.+|..+..+.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kn-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHE-GAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEEC-CEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            3789999999999999999 888876654422211101111245799999999999999999999999988877653

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.66  E-value=2.7e-15  Score=93.13  Aligned_cols=85  Identities=24%  Similarity=0.341  Sum_probs=65.6

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeeec-----CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIHE-----GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++.+ +..+..     ..++.+....     ..+.|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~D~G~Y~C~   82 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLSDSGRYDCE   82 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcCCCEEEEEE
Confidence            45567889999999999999999999999852 333321     2355443211     123799999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy16261         80 AKNTLGGSEGVIKVYN   95 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v   95 (158)
                      |.|.+|....++.|.|
T Consensus        83 A~N~~G~~~~~~~l~~   98 (98)
T cd05870          83 AASRIGGHQKSMYLDI   98 (98)
T ss_pred             EeccCCcceeEEEEeC
Confidence            9999999888877753

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.66  E-value=5.4e-15  Score=93.50  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=67.0

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEEEEEcCCCceEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKCNAKNTLGGSEGV   90 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~a~n~~g~~~~~   90 (158)
                      .|..+.|.|.+.|.|.|.++|+++ +..+.. ..++...... ......+.|.|.++. .+|.|.|+|.|.|.+|.....
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~-g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~   99 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKN-GVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD   99 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEEC-CEECCCCCCeEEEEeec-cCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence            467899999999999999999999 777653 3455443222 111123579999997 589999999999999999999


Q ss_pred             EEEEEeccC
Q psy16261         91 IKVYNIGYF   99 (158)
Q Consensus        91 ~~l~v~~~~   99 (158)
                      +.|.+...|
T Consensus       100 i~L~~~~~p  108 (109)
T cd05773         100 IQLVSTSRP  108 (109)
T ss_pred             EEEEecCCC
Confidence            999988765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.66  E-value=1.5e-15  Score=92.82  Aligned_cols=78  Identities=23%  Similarity=0.447  Sum_probs=63.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |+.+.|.|.+.|.|.|.+.|++++...+       ....++.+...+        .|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG--------DLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC--------eEEEeeCChhhCEEEEEEEEcCCCc
Confidence            6789999999999999999999833321       123455554333        6999999999999999999999999


Q ss_pred             eEEEEEEEEeccC
Q psy16261         87 SEGVIKVYNIGYF   99 (158)
Q Consensus        87 ~~~~~~l~v~~~~   99 (158)
                      ....+.|.|....
T Consensus        73 ~~~~~~l~V~~~~   85 (90)
T cd05726          73 ILTKAYLEVTDVI   85 (90)
T ss_pred             eEEEEEEEEeecc
Confidence            9999999988753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.66  E-value=1.9e-15  Score=90.00  Aligned_cols=75  Identities=27%  Similarity=0.421  Sum_probs=60.4

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLN-WGHVPDSARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEEC-CeECCCCCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            67899999999999999999999 6666555566554332     12479999999999999999999999988665544


Q ss_pred             E
Q psy16261         94 Y   94 (158)
Q Consensus        94 ~   94 (158)
                      .
T Consensus        75 ~   75 (78)
T cd05743          75 I   75 (78)
T ss_pred             E
Confidence            3

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.66  E-value=1e-15  Score=89.52  Aligned_cols=70  Identities=24%  Similarity=0.432  Sum_probs=55.6

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+++ +..+...........        +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRI-DGPLSPNRTKKLNNN--------KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEEC-CcCCCCCceeEEcCC--------CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999999 555443322111111        37999999999999999999999999988888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=1.6e-15  Score=89.73  Aligned_cols=73  Identities=26%  Similarity=0.341  Sum_probs=60.1

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....+.  .....        +.|.|.+++.+|+|.|+|.|.|..|...+.+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~-g~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   71 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLN-GVPIEELPPDPRRRVDG--------GTLILSNVQPNDTAVYQCNASNVHGYLLANA   71 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEEC-CEECCCCCCcceEEccC--------CEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence            67899999999999999999999 7766544321  11112        2799999999999999999999999999888


Q ss_pred             EEEE
Q psy16261         92 KVYN   95 (158)
Q Consensus        92 ~l~v   95 (158)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd04978          72 FVHV   75 (76)
T ss_pred             EEEE
Confidence            8876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.65  E-value=4.6e-15  Score=89.73  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=62.1

Q ss_pred             CCEEEEeEEeecCCC--eeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         15 APLTLDCHVESYPKP--ITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        15 ~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +++.|.|.+.|.|.|  .++|+++ +..+...   .++......    ...++|.|.+++..|+|.|+|.|.|.+|...+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLD-DFPIDLDKPNGHYRRMEVK----ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC-CeEccccCCCCcEEEEEec----ceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            468999999999988  5789999 7776532   233221111    01247999999999999999999999999999


Q ss_pred             EEEEEEeccC
Q psy16261         90 VIKVYNIGYF   99 (158)
Q Consensus        90 ~~~l~v~~~~   99 (158)
                      .+.|.|.++|
T Consensus        76 ~~~L~V~~~P   85 (85)
T cd05854          76 SATLVVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            9999988653

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.64  E-value=8e-15  Score=89.97  Aligned_cols=88  Identities=20%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +.+.|....+..|+.+.|.|.+.|.| +.+.|++.++..+....++......    ...++|.|.+++.+|+|.|+|.|.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQND----DVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCC----CCEEEEEEecCCcccCEEEEEEEE
Confidence            45667778899999999999999997 4999998536665544444433222    123479999999999999999999


Q ss_pred             cCCCc-eEEEEEEE
Q psy16261         82 NTLGG-SEGVIKVY   94 (158)
Q Consensus        82 n~~g~-~~~~~~l~   94 (158)
                      |..|. ..+++.|.
T Consensus        78 N~~g~~~~~sv~l~   91 (92)
T cd04977          78 DAKGTESEATVNLK   91 (92)
T ss_pred             cCCCCcceeEEEEE
Confidence            99765 46666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.64  E-value=4.9e-15  Score=91.51  Aligned_cols=83  Identities=24%  Similarity=0.377  Sum_probs=65.1

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...     .++.+....     ..+.|.|.+++.+|+|.|+|.|.
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~   82 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRRA-TRNFSEGDKSLDGRIVVRGHA-----RVSSLTLKDVQLTDAGRYDCEAS   82 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEEC-CcccCCCCccccceEEEeCCc-----cEEEEEECcCCcCcCEEeEEEEE
Confidence            345688999999999999999999999998 6544322     233332211     23579999999999999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy16261         82 NTLGGSEGVIKVYN   95 (158)
Q Consensus        82 n~~g~~~~~~~l~v   95 (158)
                      |..|....++.|.|
T Consensus        83 N~~G~~~~s~~l~v   96 (96)
T cd05732          83 NRIGGDQQSMYLEV   96 (96)
T ss_pred             eCCCCcEEEEEEeC
Confidence            99999988887754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>KOG3513|consensus

Probab=99.64  E-value=2.2e-15  Score=122.94  Aligned_cols=131  Identities=20%  Similarity=0.307  Sum_probs=107.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCe---EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSR---YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .++.+.+..|+++.|.|.+.|.|.|.++|++| +..+....+   +.+...         .|+|.++...|+|.|+|.|+
T Consensus       337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN-g~pl~~~~r~~~~~i~~g---------~L~is~v~~~dsg~YQC~A~  406 (1051)
T KOG3513|consen  337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKN-GEPLEPAERDPRYKIDDG---------TLIISNVQESDSGVYQCIAE  406 (1051)
T ss_pred             ccceeEecCCCCeEEEEEecCCCCCceEEeeC-CeecCccCCCcceEEeCC---------EEEEEecccccCeEEEeeee
Confidence            45667788999999999999999999999999 888876554   555544         59999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCC-CCc----------------------------------------------ccchhhhhhh
Q psy16261         82 NTLGGSEGVIKVYNIGYFGS-DTQ----------------------------------------------YVTDEEMQRT  114 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~-~~~----------------------------------------------~~~~~~~~~~  114 (158)
                      |.+|...+.+.|.|....+. ...                                              ....+.+...
T Consensus       407 Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~  486 (1051)
T KOG3513|consen  407 NKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNV  486 (1051)
T ss_pred             cccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEeccc
Confidence            99999999999988876211 000                                              2234677777


Q ss_pred             cccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        115 NQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       115 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      .+.|+|.|       +|.|.|-.|.....+.|.|.+++
T Consensus       487 t~~DaG~Y-------tC~A~N~~G~a~~~~~L~Vkd~t  517 (1051)
T KOG3513|consen  487 TRSDAGKY-------TCVAENKLGKAESTGNLIVKDAT  517 (1051)
T ss_pred             CcccCcEE-------EEEEEcccCccceEEEEEEecCc
Confidence            88899999       99999999999999999887765

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.64  E-value=1.9e-15  Score=88.37  Aligned_cols=70  Identities=26%  Similarity=0.389  Sum_probs=57.6

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+....++... .        +.|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~~~~~~~~-~--------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRTKKS-G--------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEEcC-C--------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46899999999999999999 8877665544322 2        269999999999999999999999988777776653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=5.1e-15  Score=88.64  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             EEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        18 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      .+.|.+.|.|.|.++|+|+ +..+....+........  ......+.|.|.+++..|+|.|+|.|.|.+|.....+.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHN-GAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEEC-CEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            4789999999999999999 88887665433222110  1122345799999999999999999999999998877664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=3.3e-15  Score=90.38  Aligned_cols=80  Identities=26%  Similarity=0.476  Sum_probs=64.5

Q ss_pred             cCceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .|..+.+.+|+++.|.|.+ .|.|.|.+.|+++ +..+.. ..++.....+        .|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a~N   72 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKD-GQPLNLDNERVRIVDDG--------NLLIAEARKSDEGTYKCVATN   72 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEEC-CEECCCCCCCEEEccCC--------EEEEeECCcccCEEEEEEEEe
Confidence            4566778899999999998 7999999999999 776654 3455444433        799999999999999999999


Q ss_pred             CCCceE-EEEEE
Q psy16261         83 TLGGSE-GVIKV   93 (158)
Q Consensus        83 ~~g~~~-~~~~l   93 (158)
                      ..|... ..+.|
T Consensus        73 ~~G~~~s~~~~l   84 (86)
T cd05724          73 MVGERESAAARL   84 (86)
T ss_pred             ccCceeeeeEEE
Confidence            999864 34444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.64  E-value=2.6e-15  Score=89.89  Aligned_cols=80  Identities=20%  Similarity=0.359  Sum_probs=62.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+.+..|+.+.|.|.+.|.|.|.++|+++ +..+...........       .+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   74 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKD-NKPLTPTEIGESRKK-------KWTLSLKNLKPEDSGKYTCHVSNRAGEI   74 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEEC-CcCCcCCccceecCc-------eEEEEEccCChhhCEEEEEEEEcCCccE
Confidence            34577899999999999999999999999 665543322211111       1379999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      .+.+.|.|
T Consensus        75 ~~~~~v~v   82 (82)
T cd05856          75 NATYKVDV   82 (82)
T ss_pred             EEEEEEeC
Confidence            88877753

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.64  E-value=2.4e-15  Score=86.65  Aligned_cols=66  Identities=29%  Similarity=0.422  Sum_probs=54.6

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+....     .        .+.|.|.++..+|+|.|+|.|.|..|..+..+.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~~-----~--------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKD-GKLISGKH-----S--------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEEC-CEECcccC-----C--------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999999999999 87764221     1        1269999999999999999999999988777776653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=4.3e-15  Score=88.65  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=64.4

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|+ +..+....++.+.. .        .|.|.+++.+|+|.|+|.|.|..|.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~~~-~--------~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRITG-E--------EVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEEeC-C--------EEEECCCChhhCEEEEEEEeCCCCc
Confidence            45567899999999999996 578999999 88877666665542 2        6999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ....+.|.|
T Consensus        71 ~~~~~~v~V   79 (79)
T cd04973          71 DTTYFSVNV   79 (79)
T ss_pred             ccEEEEEeC
Confidence            777766643

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.63  E-value=5.5e-15  Score=85.88  Aligned_cols=68  Identities=21%  Similarity=0.375  Sum_probs=54.2

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      |+.+.|.|.+.|.|.|.+.|+|+ +..+....++... .        ..|.|.++.  |+|.|+|.|.|..|...+...|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~-g~~l~~~~~~~~~-~--------~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKG-GEELTKEDEMPVG-R--------NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEEC-CEECCCccceecC-c--------cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999 7666544433221 1        258888874  7899999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=3.6e-15  Score=86.64  Aligned_cols=69  Identities=26%  Similarity=0.530  Sum_probs=56.8

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+++ +..+. ..++......        .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~-~~~~~-~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKE-DGELP-KGRAEILDDK--------SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEEC-CccCC-CCcEEEeeCC--------EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999 54443 3455554443        7999999999999999999999999988887754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.63  E-value=2.2e-14  Score=89.00  Aligned_cols=86  Identities=27%  Similarity=0.426  Sum_probs=67.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAK   81 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~   81 (158)
                      +....+.+|+.+.|.|.+.|.|.| .+.|+++ +..+...  .++.+.... ......+.|.|.++..+| .|.|+|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~-~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~   85 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWK-ENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAW   85 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEEC-CEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEE
Confidence            445668999999999999999999 6999999 7766543  566665542 122334689999999955 899999999


Q ss_pred             cCCCceEEEEEE
Q psy16261         82 NTLGGSEGVIKV   93 (158)
Q Consensus        82 n~~g~~~~~~~l   93 (158)
                      |..|.....+.|
T Consensus        86 N~~G~~~~~~~L   97 (98)
T cd05758          86 NSFGSGTAIISL   97 (98)
T ss_pred             cCCCcccEEEEe
Confidence            999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.62  E-value=4.2e-15  Score=86.52  Aligned_cols=68  Identities=21%  Similarity=0.314  Sum_probs=55.3

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+....++  ...        +.|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~-g~~l~~~~~~--~~~--------~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKN-GQLIVLNHTF--KRG--------VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEEC-CEECCCCCEE--ccC--------CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            36899999999999999999 8877654332  222        26999999999999999999999998877665554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.62  E-value=5.9e-15  Score=86.94  Aligned_cols=70  Identities=24%  Similarity=0.405  Sum_probs=56.7

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKV   93 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l   93 (158)
                      +.|.|.+.|.|.|.+.|+++ +..+.  ...++.....+        .|.|.+++.+|+|.|+|.|.|..|.. +....|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~g--------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKD-FLPVDTTSNGRIKQLRSG--------ALQIENSEESDQGKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CEEEEEEeEecCCEEEEEEC-CEECccCCCCCEEEcCCc--------EEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence            47999999999999999999 77665  34555554443        69999999999999999999999985 555666


Q ss_pred             EE
Q psy16261         94 YN   95 (158)
Q Consensus        94 ~v   95 (158)
                      .|
T Consensus        72 ~v   73 (74)
T cd05738          72 YV   73 (74)
T ss_pred             EE
Confidence            54

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.61  E-value=9.5e-15  Score=89.43  Aligned_cols=79  Identities=23%  Similarity=0.434  Sum_probs=63.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+.+.+|+.+.|.|.+.|. .|.+.|+++ +..+.. .++.+....       +.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kn-g~~l~~-~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNN-GSLLVP-PRLQLSNDN-------RTLTFNNVTRSDTGHYQCEASNEVSN   80 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEEC-CEECCC-CCEEEeCCC-------CEEEECcCChhhCEEEEEEEEcCCCC
Confidence            45578899999999999999 999999999 766543 344433221       26999999999999999999999998


Q ss_pred             e-EEEEEEEE
Q psy16261         87 S-EGVIKVYN   95 (158)
Q Consensus        87 ~-~~~~~l~v   95 (158)
                      . +..+.|.|
T Consensus        81 ~~S~~~~L~V   90 (91)
T cd05740          81 MTSDPYILNV   90 (91)
T ss_pred             EEeeeEEEEe
Confidence            6 44666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.61  E-value=8.2e-15  Score=88.25  Aligned_cols=80  Identities=19%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             CCEEEEeEEeecC--CCeeEEEcCCCeeeec---CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         15 APLTLDCHVESYP--KPITFWTHENGSLIHE---GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        15 ~~v~l~C~~~g~p--~p~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +++.|.|.+.+.|  .+.+.|+++ ++.+..   ..++......    ...+.|.|.+++..|+|+|+|.|+|.++..++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~d-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFN-GHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEEC-CEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            4689999998744  778999999 887752   2354442110    01137999999999999999999999999999


Q ss_pred             EEEEEEeccC
Q psy16261         90 VIKVYNIGYF   99 (158)
Q Consensus        90 ~~~l~v~~~~   99 (158)
                      ...|.|.++|
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            9999998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.60  E-value=1.1e-14  Score=88.00  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=61.1

Q ss_pred             CCEEEEeEEeecCCC--eeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         15 APLTLDCHVESYPKP--ITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        15 ~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +.+.|.|.+.|.|.|  .+.|+++ +..+...   .++......    ...+.|.|.+++..|+|.|+|.|.|..|....
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFN-GVPIDFDKDGGHYRRVGGK----DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC-CeEeeccCCCccEEEEecc----cccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            468999999999988  5689999 7776532   122111110    01247999999999999999999999999999


Q ss_pred             EEEEEEeccC
Q psy16261         90 VIKVYNIGYF   99 (158)
Q Consensus        90 ~~~l~v~~~~   99 (158)
                      .+.|.|.++|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            9999988753

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.60  E-value=1.1e-14  Score=86.46  Aligned_cols=72  Identities=28%  Similarity=0.570  Sum_probs=55.9

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE--EEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE--GVIKV   93 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l   93 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+... .++.+....       +.|.|.++..+|+|.|+|.|.|.+|...  ..++|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRD-GTPLSDGQGNYSVSSKE-------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEEC-CEECCCCCccEEEeCCC-------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            47999999999999999999 7776544 233333221       2699999999999999999999999874  35666


Q ss_pred             EEe
Q psy16261         94 YNI   96 (158)
Q Consensus        94 ~v~   96 (158)
                      .|.
T Consensus        73 ~v~   75 (77)
T cd05760          73 SII   75 (77)
T ss_pred             EEe
Confidence            553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.60  E-value=7.6e-15  Score=85.59  Aligned_cols=70  Identities=31%  Similarity=0.513  Sum_probs=55.3

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      +.|.|.+.|.|.|.+.|+++ +..+... +......       .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~-~~~~~~~-~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKI-GGELPAD-RTKFENF-------NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEEC-CeECCCC-ceeEecC-------CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999999999999999999 5544332 2222111       136999999999999999999999999988888766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.60  E-value=1.8e-14  Score=89.23  Aligned_cols=90  Identities=28%  Similarity=0.443  Sum_probs=63.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+...     .+......+ ..  ....+.+..+..+|+|.|
T Consensus         4 i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           4 IVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN-GQPLETDKDDPRSHRIVLPSG-SL--FFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             EEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC-CEECccccCCCCcceEEecCC-cE--EEEEeeccCCCcCcCEEE
Confidence            44566778899999999999999999999999999 7766541     111111111 00  011222333478999999


Q ss_pred             EEEEEcCCCc-eEEEEEEEE
Q psy16261         77 KCNAKNTLGG-SEGVIKVYN   95 (158)
Q Consensus        77 ~C~a~n~~g~-~~~~~~l~v   95 (158)
                      +|.|.|..|. .+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 466677665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.60  E-value=1.9e-14  Score=87.94  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCC---CeeeecCC--eEEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHEN---GSLIHEGS--RYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |+.+.|.|.+.|.|.|.+.|++.+   +..+....  ...+....+  ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999841   33333222  111111110  00001247999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ....+.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.60  E-value=9.6e-15  Score=86.23  Aligned_cols=72  Identities=25%  Similarity=0.477  Sum_probs=55.7

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      +.|.|.+.|.|.|.++|+|++...+..  ..++......       +.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED-------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC-------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            478999999999999999993322222  2344333222       2699999999999999999999999998888887


Q ss_pred             E
Q psy16261         95 N   95 (158)
Q Consensus        95 v   95 (158)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            6

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.59  E-value=3e-14  Score=87.74  Aligned_cols=77  Identities=25%  Similarity=0.372  Sum_probs=57.5

Q ss_pred             ecCceEEEe---cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEE-EeecccceEEEEEEEcCCC-CCCCeEEEE
Q psy16261          4 IPSQLIGAR---LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMW-TEKFSSYKFYMRLYIGSLS-KSDFGTYKC   78 (158)
Q Consensus         4 ~~~~~~~~~---~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C   78 (158)
                      ..|..+.+.   +|+.+.|.|.+.|.|.|.++|+++ +..+......... ..+        .|.|.++. ..|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~g--------~L~i~~~~~~~D~G~Y~C   76 (94)
T cd05848           6 QEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN-GTEIDTESDYRYSLIDG--------NLIISNPSEVKDSGRYQC   76 (94)
T ss_pred             ECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC-CeECccCCCceEEeeCC--------eEEEccCCccCcCEEEEE
Confidence            344444443   478999999999999999999999 7777543322222 222        68898875 699999999


Q ss_pred             EEEcCCCceEE
Q psy16261         79 NAKNTLGGSEG   89 (158)
Q Consensus        79 ~a~n~~g~~~~   89 (158)
                      .|.|..|....
T Consensus        77 ~A~N~~G~~~S   87 (94)
T cd05848          77 LATNSIGSILS   87 (94)
T ss_pred             EEEcCCCeEEe
Confidence            99999998743

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.59  E-value=2.5e-14  Score=88.22  Aligned_cols=83  Identities=30%  Similarity=0.478  Sum_probs=62.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCC-----CCCCCeE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSL-----SKSDFGT   75 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v-----~~~d~G~   75 (158)
                      ...|....+.+|+++.|.|.+.|.|.|.+.|+|+ +..+....  ++.....+        .+.|.++     .+.|.|.
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~--------~l~i~~v~~~~~~~~D~G~   73 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD-GVLLNLVSDERRQQLPNG--------SLLITSVVHSKHNKPDEGF   73 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC-CeECccccCcceEEccCC--------eEEEeeeeccCCCCCcCEE
Confidence            3456667788999999999999999999999999 77775443  23333332        4556655     6899999


Q ss_pred             EEEEEEcC-CCce-EEEEEEE
Q psy16261         76 YKCNAKNT-LGGS-EGVIKVY   94 (158)
Q Consensus        76 Y~C~a~n~-~g~~-~~~~~l~   94 (158)
                      |+|.|.|. .|.. +..+.|.
T Consensus        74 Y~C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          74 YQCVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEEEEECCccCcEEEeeeEEe
Confidence            99999999 9987 4456654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.58  E-value=5.1e-14  Score=86.53  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             cCceEEEecC---CCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEEE
Q psy16261          5 PSQLIGARLA---APLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKCN   79 (158)
Q Consensus         5 ~~~~~~~~~g---~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~   79 (158)
                      .|..+.+.++   ..+.|.|.+.|.|.|.++|+|+ +..+.. ..++.+. .+        .|.|.++. ..|+|.|+|.
T Consensus         7 ~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~-~~~i~~~~~~~~~~-~g--------~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKN-NLDIDLTNDRYSMV-GG--------NLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEEC-CEEccCCCCeEEEE-CC--------EEEECcCCcCCCCEEEEEE
Confidence            4444444443   4799999999999999999999 766643 3444332 23        69999985 6899999999


Q ss_pred             EEcCCCceEE-EEEE
Q psy16261         80 AKNTLGGSEG-VIKV   93 (158)
Q Consensus        80 a~n~~g~~~~-~~~l   93 (158)
                      |.|..|.... .+.|
T Consensus        77 A~N~~G~~~s~~a~l   91 (93)
T cd05849          77 VSNIYGKVRSREATL   91 (93)
T ss_pred             EEeCcceEEEccEEE
Confidence            9999998744 3443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.57  E-value=3.7e-14  Score=86.68  Aligned_cols=82  Identities=22%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCC---CeeeecC--CeEEEEEeec-ccc-eEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHEN---GSLIHEG--SRYHMWTEKF-SSY-KFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~---~~~~~~~--~~~~~~~~~~-~~~-~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |+.+.|.|.+.|.|.|.++|+|++   +..+...  .......... ..+ .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999861   2222211  1111111100 000 01126999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ..+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.57  E-value=1e-13  Score=85.33  Aligned_cols=81  Identities=23%  Similarity=0.335  Sum_probs=60.4

Q ss_pred             eecCceEEEecC---CCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCC-CCCCeEE
Q psy16261          3 VIPSQLIGARLA---APLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTY   76 (158)
Q Consensus         3 ~~~~~~~~~~~g---~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y   76 (158)
                      ...|..+.+.+|   +.+.|.|.+.|.|.|.++|+++ +..+...  .++.+. .+        .|.|.++. ..|.|.|
T Consensus         5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~-g~~l~~~~~~~~~~~-~g--------~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           5 EEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN-GTEIKFAPESRYTLV-AG--------NLVINNPQKARDAGSY   74 (94)
T ss_pred             EECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC-CEECccCCCceEEEE-CC--------eEEEccCCccCcCEEE
Confidence            345666656555   5799999999999999999999 7776533  344332 22        68898865 5999999


Q ss_pred             EEEEEcCCCceEE-EEEE
Q psy16261         77 KCNAKNTLGGSEG-VIKV   93 (158)
Q Consensus        77 ~C~a~n~~g~~~~-~~~l   93 (158)
                      +|.|.|..|.... .+.|
T Consensus        75 ~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          75 QCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEEcCcCcEEEEEEEE
Confidence            9999999998754 4443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.55  E-value=7.3e-14  Score=82.61  Aligned_cols=72  Identities=28%  Similarity=0.470  Sum_probs=58.6

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+....  ++.....+       +.|.|.++..+|.|.|+|.+.|..|.....+.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~-~~~l~~~~~~~~~~~~~~-------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKN-GMDITPKLSKQLTLIANG-------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF   72 (76)
T ss_pred             CEeEeEeeecCCCEEEEEEC-CEECCCCCCccEEEeCCC-------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence            46899999999999999999 77665442  33332221       2699999999999999999999999999999887


Q ss_pred             Ee
Q psy16261         95 NI   96 (158)
Q Consensus        95 v~   96 (158)
                      |.
T Consensus        73 V~   74 (76)
T cd05736          73 VE   74 (76)
T ss_pred             EE
Confidence            75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=6.4e-14  Score=83.74  Aligned_cols=74  Identities=19%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCC--Ceee-e-cC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHEN--GSLI-H-EG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~--~~~~-~-~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |+.+.|.|.+.|.|.|.+.|+|+.  +..+ . ..   .++....        .+.|.|.+++.+|+|.|.|.|.|..|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~   72 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN--------IGQLVIYNAQPQDAGLYTCTARNSGGL   72 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc--------ccEEEEccCCcccCEEEEEEEecCCce
Confidence            688999999999999999999972  1111 1 11   1111111        137999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ....+.|.|
T Consensus        73 ~~~~~~l~v   81 (81)
T cd05765          73 LRANFPLSV   81 (81)
T ss_pred             EEEEEEEeC
Confidence            988888764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.54  E-value=7.1e-14  Score=83.32  Aligned_cols=70  Identities=27%  Similarity=0.564  Sum_probs=52.8

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-E
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-E   88 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~   88 (158)
                      +.|.|.+.|.|.|.+.|+++++....       ...++.....+        +|.|.++..+|+|.|.|.|.|..|.. +
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG--------SLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC--------eEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            47999999999999999997332111       23344443333        79999999999999999999999987 4


Q ss_pred             EEEEEE
Q psy16261         89 GVIKVY   94 (158)
Q Consensus        89 ~~~~l~   94 (158)
                      ..+.|.
T Consensus        73 ~~~~l~   78 (79)
T cd05734          73 KSMVLT   78 (79)
T ss_pred             eEEEEe
Confidence            455554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.54  E-value=7.2e-14  Score=83.60  Aligned_cols=73  Identities=19%  Similarity=0.401  Sum_probs=56.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..|+.+.+.+|+.+.|.|.+.|.|.| .+.|.++ +..+...  ... .        .+.|.|..+  .|.|.|+|.|.
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~-g~~l~~~--~~~-~--------~s~L~i~~~--~d~g~Y~C~A~   67 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG-GSPLGDP--PAP-S--------PSVLNVPGL--NETSKFSCEAH   67 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC-CEECCCC--CCC-C--------CCEEEEccc--cCCeEEEEEEE
Confidence            345677889999999999999999999 7999999 7766431  111 1        126888877  47899999999


Q ss_pred             cCCCceEE
Q psy16261         82 NTLGGSEG   89 (158)
Q Consensus        82 n~~g~~~~   89 (158)
                      |.+|....
T Consensus        68 N~~G~~~s   75 (81)
T cd05749          68 NAKGVTTS   75 (81)
T ss_pred             eccCcEEe
Confidence            99997643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.53  E-value=9.3e-14  Score=81.14  Aligned_cols=67  Identities=24%  Similarity=0.366  Sum_probs=52.0

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      +.|.|.+.|.|.|.+.|+|+ +..+... .++.. ...        +|.|.+++.+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~~~~~~~-~~~--------~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKD-GLPAAEKCSRYHV-DGY--------SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEEC-CEECCCCCcEEEe-CCC--------EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            36899999999999999999 7776554 34332 112        69999999999999999999986665444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.53  E-value=5.2e-13  Score=82.45  Aligned_cols=88  Identities=20%  Similarity=0.384  Sum_probs=69.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCN   79 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~   79 (158)
                      .......+.+|+.+.|.|.+.+.|.| .+.|.+. +..+..  ..++.+.... ......+.|+|.++...| .|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~-~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~Y~C~   83 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWK-ENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTHYNCT   83 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEc-cccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcEEEEE
Confidence            45566778999999999999998887 5789888 656544  3677776543 223346789999998877 6899999


Q ss_pred             EEcCCCceEEEEEE
Q psy16261         80 AKNTLGGSEGVIKV   93 (158)
Q Consensus        80 a~n~~g~~~~~~~l   93 (158)
                      |.|.+|.....++|
T Consensus        84 a~N~~G~d~~~i~L   97 (98)
T cd05898          84 AWNSFGSGTAIIQL   97 (98)
T ss_pred             EEeCCccceEEEEe
Confidence            99999999888776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.53  E-value=2e-13  Score=82.28  Aligned_cols=81  Identities=22%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             CCCEEEEeEEeec--CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         14 AAPLTLDCHVESY--PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        14 g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      |+.+.|.|.+.+.  |.|.+.|.++ +..+...................+.|.|.+++.+|+|.|.|.|.|..|..+.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYP-GKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecC-CcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            6889999999999  7889999987 543322111000000001122346899999999999999999999999988887


Q ss_pred             EEEE
Q psy16261         92 KVYN   95 (158)
Q Consensus        92 ~l~v   95 (158)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            7754

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG3513|consensus

Probab=99.53  E-value=9.3e-14  Score=113.60  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=96.6

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ++......|+.+.|.|.+.|.|.|.+.|.|.++..+.  .+......+       ..|.|.+++.+|+|.|+|.|+|..|
T Consensus       248 p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~--~r~~~~~~~-------~vL~I~nv~~~D~G~Y~C~AeN~~G  318 (1051)
T KOG3513|consen  248 PETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP--RRATYSNYG-------KVLKIPNVQYEDAGEYECIAENSRG  318 (1051)
T ss_pred             CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC--cceeeeccc-------cEEEecccCcCCCeEEEEEEecccc
Confidence            4456678999999999999999999999999665443  223232222       2799999999999999999999999


Q ss_pred             ceEEEEEEEEeccCCC------------------------CCc----------------------ccchhhhhhhccccc
Q psy16261         86 GSEGVIKVYNIGYFGS------------------------DTQ----------------------YVTDEEMQRTNQIAR  119 (158)
Q Consensus        86 ~~~~~~~l~v~~~~~~------------------------~~~----------------------~~~~~~~~~~~~~~~  119 (158)
                      .......|.|...|.-                        |.+                      ....+.+......+.
T Consensus       319 ~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~ds  398 (1051)
T KOG3513|consen  319 SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDS  398 (1051)
T ss_pred             cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccC
Confidence            8888888887765411                        000                      011123333445677


Q ss_pred             ccccCcccceEeeeccCCceEEEEccccCCCC
Q psy16261        120 SKWGSERTNQIARSKWGSGYRYTSGPIRLPDP  151 (158)
Q Consensus       120 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~  151 (158)
                      |+|       -|.|.|.-|+.+.+++|+|-+.
T Consensus       399 g~Y-------QC~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  399 GVY-------QCIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             eEE-------EeeeecccceEeeeeEEEEEcc
Confidence            888       9999999999999999996433

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.51  E-value=1.6e-13  Score=84.50  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             ceEEEecCCCEEEEeEEee-----cCCCeeEEEcCCCeeeec----CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          7 QLIGARLAAPLTLDCHVES-----YPKPITFWTHENGSLIHE----GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g-----~p~p~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      ....+.+|+.+.|.|.+.+     .|.|.+.|+|+ +..+..    ..++... ..        .|.|..+..+|+|.|+
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~~~~~~~~~~r~~~~-~~--------~L~I~~~~~~DsG~Y~   76 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGKTPIPTEERSRMHQQ-KD--------LLWFLPAALEDSGLYT   76 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEc-CCCCcccccccceeeec-CC--------eEEEccCCcccCeEEE
Confidence            3455789999999999999     68899999999 544321    2233221 22        6999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy16261         78 CNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v   95 (158)
                      |.+.|..|.....+.|.|
T Consensus        77 C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          77 CVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             EEEcCCCccEEEEEEEEC
Confidence            999999999888887754

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.51  E-value=1.7e-13  Score=80.70  Aligned_cols=70  Identities=26%  Similarity=0.451  Sum_probs=54.3

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEE---EEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYH---MWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      +.|.|.+.| .|.|.+.|+++ +..+....+..   +....     ..+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~-g~~l~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKD-GKELNRKNKPRNIKIRNKK-----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcC-CeeccccCCcceEEEEecC-----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 99999999999 77776543322   21111     2347999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.49  E-value=8.2e-13  Score=79.41  Aligned_cols=83  Identities=24%  Similarity=0.408  Sum_probs=64.0

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+.+..|+.+.|.|.+.+.|.+.+.|+++ +..+.....+......    .....|.|.++..+|.|.|.|.+.|..|..
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~   77 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKD-GKPFKKEHRIGGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYGSI   77 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEEC-CEECcccCceeEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence            35677899999999999999999999999 7666544333222111    112369999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      ..++.|.|
T Consensus        78 ~~~~~l~v   85 (85)
T cd05729          78 NHTYKVDV   85 (85)
T ss_pred             EEEEEEeC
Confidence            88877753

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.48  E-value=1.3e-12  Score=80.46  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      .+.+.+.+|+++.|.|.+.+.|.|.+.|++++...+.       ...|+.+.....    ....|.|.+++.+|.|.|+|
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~nV~~~D~G~YtC   79 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP----TELIISISNVQLSDEGEYTC   79 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC----ceEEEEECCCCcccCEEEEE
Confidence            3556789999999999999999999999998333222       223444332221    12379999999999999999


Q ss_pred             EEEcCCCceEEEEEE
Q psy16261         79 NAKNTLGGSEGVIKV   93 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l   93 (158)
                      .+... -..++..+|
T Consensus        80 ~~~t~-~~~~~~~~~   93 (95)
T cd05882          80 SIFTM-PVRTAKATV   93 (95)
T ss_pred             EEEee-ccccEEEEE
Confidence            99872 233444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.47  E-value=9.2e-13  Score=80.24  Aligned_cols=82  Identities=17%  Similarity=0.310  Sum_probs=62.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ++..+.+.+|+.+.|.|.+.+ |.+.+.|+++ +..+...    .++.....         .|.|.+++.+|+|.|.|.|
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~-~~~~~~~~~~~~~~~~~~~---------~L~I~~~~~~D~G~Y~C~a   70 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQ-GGPLQRKEEPEERLLVTED---------GLLIRSVSPADAGVYTCQS   70 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEEC-CcccccccCcCceEEEcCC---------CEEEccCCHHHCEEEEEEE
Confidence            456677899999999999987 8889999999 6555433    23333222         4999999999999999999


Q ss_pred             EcCC-CceEEEEEEEEec
Q psy16261         81 KNTL-GGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~-g~~~~~~~l~v~~   97 (158)
                      .+.. +...+++.|.|..
T Consensus        71 ~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          71 VEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             ecCccceeEeEEEEEEec
Confidence            8764 4446677777653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.46  E-value=2.8e-13  Score=80.37  Aligned_cols=65  Identities=26%  Similarity=0.515  Sum_probs=48.9

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCC----CCCeEEEEEEEcCCCceEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSK----SDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~----~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +.|.|.+.|.|.|.++|+|+ +..+...  .++......       +.|.|..+..    +|+|.|+|.|.|.+|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~-g~~l~~~~~~~~~~~~~~-------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRN-GTHFDPEKDPRVTMKPDS-------GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEEC-CeECCCCCCCCEEEeCCC-------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            47899999999999999999 7766433  333332211       2688888754    6899999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.46  E-value=8.9e-13  Score=78.19  Aligned_cols=65  Identities=26%  Similarity=0.518  Sum_probs=48.4

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCC----CCCCeEEEEEEEcCCCceEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLS----KSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~----~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +.|.|.+.|.|.|.++|+++ +..+.  ...++.+....       ++|.|..+.    ..|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~-g~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRN-GKFFNVAKDPRVSMRRRS-------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEEC-CEEccCcCCCcEEEeCCC-------ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            47999999999999999999 77653  33444432211       268888764    24699999999999997744

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.45  E-value=1.7e-12  Score=78.52  Aligned_cols=69  Identities=20%  Similarity=0.416  Sum_probs=56.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|+...+..|+++.|.|.+.+ +.+.+.|+++ +..+..+ .++.+. .+        .|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n-g~~i~~~~~r~~~~-~~--------~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFD-GKVLTPESAKYLLY-RD--------GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEEC-CEECCCCCceEEEE-CC--------cEEEeCCCHHHCEEEEEEEEec
Confidence            466778999999999999864 6789999999 8877665 455443 33        5999999999999999999886


Q ss_pred             C
Q psy16261         84 L   84 (158)
Q Consensus        84 ~   84 (158)
                      .
T Consensus        71 ~   71 (87)
T cd05873          71 S   71 (87)
T ss_pred             c
Confidence            3

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.45  E-value=2.5e-12  Score=79.26  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      .++.+.+.+|+++.|.|.+.+.|.+.+.|++.+...+       ...+|+.......    ...+|.|.+++.+|+|.|.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~----~~~sL~I~~v~~~DsG~Y~   78 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISISDVSLSDEGQYT   78 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCC----CcEEEEECcCCcccCEEEE
Confidence            4567889999999999999999999999987522222       1234554422211    1237999999999999999


Q ss_pred             EEEEcCCCceEEEEEEE
Q psy16261         78 CNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~   94 (158)
                      |.+.+.. .......|.
T Consensus        79 C~~~t~~-~~~~~~~l~   94 (95)
T cd07701          79 CSLFTMP-VKTSKAYLT   94 (95)
T ss_pred             EEeEeec-CccEEEEEE
Confidence            9999853 335555554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.44  E-value=8.9e-13  Score=78.32  Aligned_cols=66  Identities=21%  Similarity=0.429  Sum_probs=54.6

Q ss_pred             CeeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          1 MIVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         1 ~i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +|++.|+...+.+|+++.|.|.+.+.|.+ .+.|+++ +..+...       .        ..|.|.++ .+|+|.|+|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn-g~~l~~~-------~--------~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN-GKLLETT-------T--------NSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC-CEEeecc-------C--------CeEEEeec-ccCCEEeEEE
Confidence            36778888889999999999999998864 7999999 7765221       1        16889999 9999999999


Q ss_pred             EEcC
Q psy16261         80 AKNT   83 (158)
Q Consensus        80 a~n~   83 (158)
                      |.|.
T Consensus        65 a~~~   68 (78)
T cd05752          65 TQGS   68 (78)
T ss_pred             CCCC
Confidence            9986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.44  E-value=7.6e-13  Score=78.49  Aligned_cols=65  Identities=23%  Similarity=0.476  Sum_probs=47.8

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCC----CCCeEEEEEEEcCCCceEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSK----SDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~----~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +.|.|.+.|.|.|.++|+++ +..+...  .++......       ++|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~~~-------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRN-GTHFDIDKDPKVTMKPNT-------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEEC-CeECCCcCCCCEEEeCCC-------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            47999999999999999999 7765322  333332221       2677777654    3789999999999998754

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.44  E-value=8.2e-12  Score=75.25  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecC-Ce-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC--ceEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG-SR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG--GSEG   89 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~   89 (158)
                      |+.+.|.|.+.+.|.+.+.|.+. ++..... .. .....   +.....+.|.|.+++.+|+|.|.|.|.|..+  ....
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~---~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~   76 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYP-GKDIGKGIPEVEEVKV---PATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK   76 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEEC-CccCCCCceEEEEEec---CCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence            78899999999999999999987 4322111 00 00100   1122346899999999999999999999876  4566


Q ss_pred             EEEEEEe
Q psy16261         90 VIKVYNI   96 (158)
Q Consensus        90 ~~~l~v~   96 (158)
                      ++.|.|.
T Consensus        77 sv~i~V~   83 (84)
T cd05861          77 KVNITVH   83 (84)
T ss_pred             EEEEEEe
Confidence            6666653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.43  E-value=1.3e-12  Score=78.93  Aligned_cols=78  Identities=26%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             ecCceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+|..+.+.+|+.+.|.|.+.+ .|.+.+.|+++ +..+...  . ....        +.|.|.+++.+|+|.|.|.|.|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~-~~~~~~~--~-~~~~--------~~L~I~~v~~~DsG~Y~C~a~n   73 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRV-GGGLPSR--A-MDFN--------GILTIRNVQLSDAGTYVCTGSN   73 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEEC-CCcCCCc--c-cccC--------CEEEECCCCHHHCEEEEEEEec
Confidence            3566778899999999999975 68889999999 5433221  1 1111        2799999999999999999999


Q ss_pred             CCCceEEEEEE
Q psy16261         83 TLGGSEGVIKV   93 (158)
Q Consensus        83 ~~g~~~~~~~l   93 (158)
                      ..|...+.+.|
T Consensus        74 ~~g~~~~~~~l   84 (85)
T cd05754          74 MLDTDEATATL   84 (85)
T ss_pred             cCCeEeEEEEE
Confidence            99998887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.43  E-value=2.5e-12  Score=78.61  Aligned_cols=65  Identities=32%  Similarity=0.589  Sum_probs=51.1

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEEEcCCCceE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g~~~   88 (158)
                      ++.+.|.|.+.|.|.|.++|+++ +..+..  ..++... .+        .|.|.++.. +|.|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~-~~~l~~~~~~~~~~~-~~--------~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMN-GTEIDDEPDSRYSLV-GG--------NLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEEC-CEECCCCCCCCEEEE-CC--------EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            45799999999999999999999 776633  2333332 22        688988874 899999999999999764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.40  E-value=3.5e-12  Score=75.35  Aligned_cols=70  Identities=29%  Similarity=0.437  Sum_probs=52.0

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecC----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEG----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      +.|.|.+.+ .|.+.+.|+++ ++.+...    .++......     ..+.|.|.++..+|+|.|+|.+.|..|....++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~-g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKN-GKEIGAKNKPDNKIKIRKKK-----KSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEEC-CcccccCCCCCceEEEEeCC-----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            479999875 67789999999 7766432    222222111     124799999999999999999999999887765


Q ss_pred             E
Q psy16261         92 K   92 (158)
Q Consensus        92 ~   92 (158)
                      .
T Consensus        75 ~   75 (76)
T cd05895          75 N   75 (76)
T ss_pred             e
Confidence            4

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=1.2e-12  Score=80.15  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=60.3

Q ss_pred             CceEEEecCCCEEEEeE-EeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKNT   83 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~   83 (158)
                      .+.+.+.+|+.+.|.|. ..|.|.|.+.|++++...+..+.|+.+...+        .|.|.+++..|+| .|.|.|.|.
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--------nL~fs~v~~~D~g~~Y~C~a~~~   81 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--------NLYFANVEEQDSHPDYICHAHFP   81 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--------eEEEEEEehhhCCCCeEEEEEcc
Confidence            45678999999999997 6999999999998844445556777666555        8999999999999 799999998


Q ss_pred             CCc
Q psy16261         84 LGG   86 (158)
Q Consensus        84 ~g~   86 (158)
                      ...
T Consensus        82 ~~~   84 (95)
T cd05845          82 GLR   84 (95)
T ss_pred             ccc
Confidence            643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.39  E-value=4.9e-12  Score=77.47  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             eEEEecCCCEEEEeEEeec-----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          8 LIGARLAAPLTLDCHVESY-----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.+|+...|.|...+.     |.|.+.|+|+ +..+....+.. ....        .|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~-~~~i~~~~~~~-~~~~--------~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKD-CKLLEGDRKRF-VKGS--------KLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeEC-CEECCCCccEE-ecCC--------EEEEeeCChhhCEEEEEEEEe
Confidence            3457889999999987543     5779999999 77776544332 2333        799999999999999999999


Q ss_pred             CCCceEEEEEEE
Q psy16261         83 TLGGSEGVIKVY   94 (158)
Q Consensus        83 ~~g~~~~~~~l~   94 (158)
                      ..+.....++..
T Consensus        74 ~~~~~~~~~t~t   85 (92)
T cd05757          74 THNGKQYNVTRT   85 (92)
T ss_pred             cCCCEEEEEEEE
Confidence            988876554443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>KOG4194|consensus

Probab=99.37  E-value=5.2e-12  Score=98.23  Aligned_cols=93  Identities=19%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .|..+....|+.+.|.|.+.|.|.|+|.|.|++|..++..  .|+++..+++       .+.|.+++.+|.|.|+|.|.|
T Consensus       618 tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd-------~f~Itnvk~eD~GiYtC~A~n  690 (873)
T KOG4194|consen  618 TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD-------VFFITNVKIEDQGIYTCTAQN  690 (873)
T ss_pred             CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC-------EEEEecccccccceeEEeeec
Confidence            3566778899999999999999999999999977656543  5666666552       588999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCCCCCc
Q psy16261         83 TLGGSEGVIKVYNIGYFGSDTQ  104 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~~~~~  104 (158)
                      .+|...+..+|.|.+.|....+
T Consensus       691 ~AG~isanAtL~V~e~p~f~~P  712 (873)
T KOG4194|consen  691 VAGQISANATLTVLETPSFSIP  712 (873)
T ss_pred             cccceeeceEEEEecCCccccc
Confidence            9999999999999887654443

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.33  E-value=5.3e-11  Score=73.28  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+.       ...|+.+......    ...|.|.+++.+|+|.|.|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSAN----ELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCC----eeEEEEccCCcccCEEEEEE
Confidence            456789999999999999988899999875232221       1245554322111    23699999999999999999


Q ss_pred             EEcCCCceEEEEEEE
Q psy16261         80 AKNTLGGSEGVIKVY   94 (158)
Q Consensus        80 a~n~~g~~~~~~~l~   94 (158)
                      +.+... ..+.+.|.
T Consensus        81 ~~~~~~-~~~~~~~~   94 (95)
T cd05717          81 LYTMPV-QTAKATVT   94 (95)
T ss_pred             EecCCC-ceEEEEEE
Confidence            998653 35555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.32  E-value=1.5e-10  Score=71.37  Aligned_cols=90  Identities=21%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ...+.+.+|+++.|.|.+.++|.|. +.|.++ +..+.............+.++..+.|.+..++.+|.|.|+|.|.|..
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~-~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~   88 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYM-NRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD   88 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcC-CcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence            3456799999999999999999997 999998 65443322212232222456678899999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                      +..+.++.|.|.
T Consensus        89 ~~~s~tF~l~v~  100 (101)
T cd05860          89 ASASVTFNVYVN  100 (101)
T ss_pred             CeEEEEEEEEEe
Confidence            988888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.28  E-value=8.5e-11  Score=71.85  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee----ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..+...+|+.+.|.|.. +.|.|.++|++.+ +...    ....++....         +.|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~---------~~L~I~~~~~~DsG~Y~C~a~   73 (91)
T cd05871           4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE---------RGLLLRSLQRSDAGVYTCTAV   73 (91)
T ss_pred             eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec---------CeEEEeeCChhHCEEEEEEEE
Confidence            34568899999999997 5788999999842 2111    1223443322         259999999999999999998


Q ss_pred             -cCCCceEEEEEEEEe
Q psy16261         82 -NTLGGSEGVIKVYNI   96 (158)
Q Consensus        82 -n~~g~~~~~~~l~v~   96 (158)
                       |..+.....++|.|.
T Consensus        74 ~~~~~~~~~~~~l~v~   89 (91)
T cd05871          74 EHSFSQTLAKYTLHVI   89 (91)
T ss_pred             ccCCeEEEEEEEEEEe
Confidence             466656667777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.27  E-value=1.7e-11  Score=75.28  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             ceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeee--ecCCeEEEEE-eecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLI--HEGSRYHMWT-EKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+.+|+.+.|.|.. .|.|.+.+.|+++ +..+  ..+.|..+.. .+        .|.|.+++.+|+|.|+|.|+|
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~d~r~~~~~~~G--------~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPEDGRRFVSQTNG--------NLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-CcccccccCCCeEEeCCCC--------cEEEeecCHhhCceeEEEEEe
Confidence            44568899999999965 7789999999999 6543  2233333332 34        799999999999999999999


Q ss_pred             CCCce
Q psy16261         83 TLGGS   87 (158)
Q Consensus        83 ~~g~~   87 (158)
                      .+...
T Consensus        82 ~~~~~   86 (96)
T cd05727          82 PSSTK   86 (96)
T ss_pred             cccCC
Confidence            86543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.26  E-value=8.7e-11  Score=71.06  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeec---CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHE---GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      |+.+.|.|.+.+.+.+  .+.|..+ +.....   ....+...  ...+...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p-~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYP-GKKEQRAKSVSENRRSL--QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcC-Ccccccceecccccccc--cccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            7889999999987654  6789877 432211   11100000  01123456899999999999999999999999888


Q ss_pred             EEEEEEEe
Q psy16261         89 GVIKVYNI   96 (158)
Q Consensus        89 ~~~~l~v~   96 (158)
                      ..+.|.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            88888774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG4221|consensus

Probab=99.26  E-value=7.5e-11  Score=97.39  Aligned_cols=89  Identities=24%  Similarity=0.321  Sum_probs=70.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|.++ +..+.-+ .++.+...        ++|.|.+++..|+|.|+|.|.|.
T Consensus       243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrn-g~~i~~ds~rivl~g~--------~slliS~a~~~dSg~YtC~Atn~  313 (1381)
T KOG4221|consen  243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLRN-GEKISVDSYRIVLVGG--------SSLLISNATDDDSGKYTCRATNT  313 (1381)
T ss_pred             CCCccccccCCcEEEEEEecCCCCCceEEeeC-CeeeeecceEEEEecc--------cceEEeccccccCceEEEEecCC
Confidence            34455678999999999999999999999999 7776654 34433333        37999999999999999999997


Q ss_pred             CCceEEEEEEEEeccCCCC
Q psy16261         84 LGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~~~  102 (158)
                      .....+...|.|...|..+
T Consensus       314 ~D~idasaev~V~a~P~~~  332 (1381)
T KOG4221|consen  314 NDSIDASAEVTVLAPPGFT  332 (1381)
T ss_pred             CcccccceEEEEEcCCCCC
Confidence            6666777777777765443

>smart00410 IG_like Immunoglobulin like

Probab=99.26  E-value=4e-10  Score=66.82  Aligned_cols=84  Identities=26%  Similarity=0.490  Sum_probs=64.6

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|+++++..+....++...... .    ...|.|.+++..|.|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-S----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-C----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            34567899999999999998888999998734444444555554443 1    347999999999999999999988887


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            766666654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.26  E-value=4e-10  Score=66.82  Aligned_cols=84  Identities=26%  Similarity=0.490  Sum_probs=64.6

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|+++++..+....++...... .    ...|.|.+++..|.|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-S----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-C----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            34567899999999999998888999998734444444555554443 1    347999999999999999999988887


Q ss_pred             eEEEEEEEE
Q psy16261         87 SEGVIKVYN   95 (158)
Q Consensus        87 ~~~~~~l~v   95 (158)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            766666654

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.25  E-value=6.1e-11  Score=66.50  Aligned_cols=63  Identities=32%  Similarity=0.501  Sum_probs=49.0

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +|+.+.|.|.+.+.|.+.+.|+++ +..+..  .......       ...|.|.++...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~--~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKD-GKPLPE--SNRLSAS-------GSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEEC-CEECCC--CCEEecC-------CcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999998999999999998 665542  1111111       12699999999999999999998765

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.21  E-value=7e-11  Score=71.00  Aligned_cols=66  Identities=21%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             eEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ...+.+|+.+.|.|.+.+ .+.+.+.|+|+ +..+....     ..        +.|.|..++.+|+|.|.|.+.+..|.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~~~-----~~--------~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKYSH-----SN--------SNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccccC-----CC--------ceEEECccCHHHCEEEEEEEEeCCce
Confidence            345889999999999854 55678999999 65543210     11        26999999999999999999999875


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus        74 ~   74 (83)
T cd05753          74 Y   74 (83)
T ss_pred             e
Confidence            4

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.15  E-value=3e-10  Score=69.72  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +.+.+|+++.|.|.+.+.+.+.+.|++++.+.+.             ..+|+......  ......+|.|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~--~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNL--WDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceeccc--CCCCeEEEEECCCCHHHCEE
Confidence            4577899999999999999999999976222211             11222222210  01123469999999999999


Q ss_pred             EEEEEEcCCCce
Q psy16261         76 YKCNAKNTLGGS   87 (158)
Q Consensus        76 Y~C~a~n~~g~~   87 (158)
                      |.|.+.|..+..
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999999986643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4222|consensus

Probab=99.12  E-value=2e-10  Score=94.39  Aligned_cols=133  Identities=18%  Similarity=0.283  Sum_probs=98.5

Q ss_pred             ecCceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +.+..+.+..|+.+.|.|.- .|.|.|.+.|.|+ +..+.  ..+++.+...+        .|.|.++...|.|+|.|++
T Consensus       136 v~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~~lisgG--------~LlIsnvrksD~GtY~CVa  206 (1281)
T KOG4222|consen  136 VSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPIIALISGG--------NLLISNVRKSDEGTYACVA  206 (1281)
T ss_pred             cCcccccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeEEEecCC--------cEEEeccccCCCceeeeee
Confidence            34455678889999999975 7899999999999 77766  33555555555        7999999999999999999


Q ss_pred             EcCCCceEE-EEEEEEeccCCC------------------------CCc-------------------c-cchhhhhhhc
Q psy16261         81 KNTLGGSEG-VIKVYNIGYFGS------------------------DTQ-------------------Y-VTDEEMQRTN  115 (158)
Q Consensus        81 ~n~~g~~~~-~~~l~v~~~~~~------------------------~~~-------------------~-~~~~~~~~~~  115 (158)
                      .|.+|..+. ...|.|...+..                        +..                   . ...+.+.+..
T Consensus       207 tNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t  286 (1281)
T KOG4222|consen  207 TNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT  286 (1281)
T ss_pred             cccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence            999998744 466666655422                        000                   1 1224455555


Q ss_pred             ccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        116 QIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       116 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      .++.+.|       .|.+.|..|-...++.++|-.|+
T Consensus       287 p~deg~y-------~C~a~n~vG~l~asa~ltV~apP  316 (1281)
T KOG4222|consen  287 PTDEGTY-------VCPAENLVGGLEASATLTVQAPP  316 (1281)
T ss_pred             CCcccce-------eeeccccccccccccceEEecCc
Confidence            5667777       99999999999999988876554

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.12  E-value=8.9e-10  Score=78.16  Aligned_cols=68  Identities=19%  Similarity=0.327  Sum_probs=54.7

Q ss_pred             EEEecCCCEEEEeEEee-----cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          9 IGARLAAPLTLDCHVES-----YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+.+|+.+.|.|.+.+     .|.|.++|+|+ +..+....++.+....       +.|.|.+++.+|+|.|+|.|...
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn-g~~l~~~~r~~~~~~~-------~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN-GNIVLYTDRIQLRNNN-------STLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEEC-CEECCCCCCEEEeCCC-------CEEEECcCCHHhCEEEEEEEEEe
Confidence            45678999999999863     45789999999 8887766666554322       26999999999999999999986


Q ss_pred             C
Q psy16261         84 L   84 (158)
Q Consensus        84 ~   84 (158)
                      .
T Consensus       211 ~  211 (227)
T PHA02826        211 K  211 (227)
T ss_pred             E
Confidence            4

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.10  E-value=1.1e-09  Score=65.79  Aligned_cols=66  Identities=23%  Similarity=0.375  Sum_probs=55.4

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+.+.+.+|+++.|.|...+. ...+.|+++ +..+..+.++.....+         |.|..++..|+|.|.|.+..
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~n-g~~l~~~~r~~~~~~G---------LlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFN-GTPLNAQFSYRVGTDG---------LLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC-CccEEEEEC-CcccCCCcceEEeCCC---------CEEEECCHhhCEEEEEEEec
Confidence            356678999999999999885 669999999 8877766777666665         88999999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.10  E-value=2.1e-09  Score=64.27  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce--EEEEEE
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS--EGVIKV   93 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l   93 (158)
                      +.|.|.+.| .|.+.++|+++ ++.+............+..+...+.|.+......|.|.|+|.|.|.....  ..+++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEEC-CEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 68889999999 87765432111111111234445678888777788999999999975443  444444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.09  E-value=5.5e-09  Score=64.14  Aligned_cols=74  Identities=18%  Similarity=0.268  Sum_probs=56.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      .+.+.+.+|+++.|.|.+.+.....+.|++.+...+       ....|+.......+.+    +|.|.+++.+|.|.|.|
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~----tL~I~~vq~~D~G~Y~C   79 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNEL----RVSLSNVSLSDEGRYFC   79 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEE----EEEECcCCcccCEEEEE
Confidence            456778999999999999998777888987732222       2346777665332333    69999999999999999


Q ss_pred             EEEcC
Q psy16261         79 NAKNT   83 (158)
Q Consensus        79 ~a~n~   83 (158)
                      .+...
T Consensus        80 qv~t~   84 (95)
T cd05881          80 QLYTD   84 (95)
T ss_pred             EEEcc
Confidence            98763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.06  E-value=1.8e-09  Score=80.65  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=57.2

Q ss_pred             EEecCCCEEEEeEE-----eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHV-----ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        10 ~~~~g~~v~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+.+|+.+.|.|.+     .|.|.+.+.|+|+ +..   ..+......+       ..|.|..+..+|+|.|+|.+.|..
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~-g~~---~~~~~~~~~g-------~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKR-GAD---NDRIIPIDNG-------SNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEEC-CCc---cceEEEccCC-------ceEEEcccCcccCeEEEEEEECCC
Confidence            35679999999997     6889999999999 532   1122222222       148899999999999999999998


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      |.....+.|.|..
T Consensus       106 g~~~~s~~L~V~~  118 (326)
T PHA02785        106 YCDMMSLNLTIVS  118 (326)
T ss_pred             cceEEEEEEEEEe
Confidence            8777776666543

>KOG4221|consensus

Probab=99.05  E-value=1.7e-09  Score=89.62  Aligned_cols=131  Identities=15%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+..|+.+.|.|.+.+.|.|.+.|.++ ...+..++++.....+        .|.|.+++..|.|.|.|.+.+..-.
T Consensus       148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn-~~pl~~~~r~i~lpsG--------~L~I~~~qp~d~g~yrc~vt~g~~~  218 (1381)
T KOG4221|consen  148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKN-DQPLPLDSRVIVLPSG--------ALEISGLQPSDTGEYRCVVTGGASQ  218 (1381)
T ss_pred             cceeEecCCcEEEEEEEcCccCceeEEecc-cccccCCCcEEEcCCC--------cEEecccccCCCceEEEEEecCCcC
Confidence            345678899999999999999999999999 7777767787777776        8999999999999999999987544


Q ss_pred             e-EEEEEEEEeccC------------CC------------------CCc---------------------ccchhhhhhh
Q psy16261         87 S-EGVIKVYNIGYF------------GS------------------DTQ---------------------YVTDEEMQRT  114 (158)
Q Consensus        87 ~-~~~~~l~v~~~~------------~~------------------~~~---------------------~~~~~~~~~~  114 (158)
                      . +....|.+...+            ..                  +..                     ....+.+.+.
T Consensus       219 r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a  298 (1381)
T KOG4221|consen  219 RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNA  298 (1381)
T ss_pred             CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecc
Confidence            3 223344333111            00                  000                     0123455556


Q ss_pred             cccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261        115 NQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG  153 (158)
Q Consensus       115 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (158)
                      ..++.|.|       .|||.|..-.-..++.++|-.||+
T Consensus       299 ~~~dSg~Y-------tC~Atn~~D~idasaev~V~a~P~  330 (1381)
T KOG4221|consen  299 TDDDSGKY-------TCRATNTNDSIDASAEVTVLAPPG  330 (1381)
T ss_pred             ccccCceE-------EEEecCCCcccccceEEEEEcCCC
Confidence            66777888       999999777777788888655544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.05  E-value=5.2e-09  Score=78.21  Aligned_cols=81  Identities=22%  Similarity=0.311  Sum_probs=57.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecC-----CeEEEEEee---cccceEEEEEEEcCCCCCCCe
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEG-----SRYHMWTEK---FSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      |+.+.+..|+.+.|.|.+.|.|.+   .+.|+++ +..+...     .++......   .......+.|.|.+++.+|+|
T Consensus       227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN-GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC-CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence            344566789999999999998864   8999999 7766432     233222110   011123457999999999999


Q ss_pred             EEEEEEEcCCCce
Q psy16261         75 TYKCNAKNTLGGS   87 (158)
Q Consensus        75 ~Y~C~a~n~~g~~   87 (158)
                      .|+|.|.|..+..
T Consensus       306 ~Y~C~A~n~~~~~  318 (326)
T PHA02785        306 TFTCMAFTIPSIS  318 (326)
T ss_pred             eeEEEEEeccCce
Confidence            9999999987544

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.05  E-value=1.6e-09  Score=64.03  Aligned_cols=71  Identities=30%  Similarity=0.530  Sum_probs=54.2

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc-e
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG-S   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~   87 (158)
                      ..+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....       .        .+.+..+..+|.|.|.|.+.+..+. .
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~-------~--------~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKN-GSPINSSQ-------N--------GLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEET-TEEEEEES-------S--------EEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeee-eeeeeeee-------e--------eeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            4578999999999999998999999998 65554221       1        2667888999999999999996543 3


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      +..+.|.|
T Consensus        73 s~~~~v~V   80 (80)
T PF13895_consen   73 STSVNVTV   80 (80)
T ss_dssp             EEEEEEEE
T ss_pred             eeeEEeeC
Confidence            45555543

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=3.9e-10  Score=64.13  Aligned_cols=63  Identities=30%  Similarity=0.512  Sum_probs=44.1

Q ss_pred             CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261         14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus        14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |+.+.|.|.+ .+.+...+.|.++ +...............   ......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKN-GQSLPEGSTTNRSTNS---VSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEET-TTTTSEEEEEEEEETT---TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEEC-CccccCcceeEeeccc---ceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 7777889999999 5544333222222211   111124999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.01  E-value=3.9e-09  Score=66.08  Aligned_cols=84  Identities=15%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCe----ee-e-------------cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS----LI-H-------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~----~~-~-------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++++-...+.+|+++.|.|.........+.|+|+...    .+ .             ...|..+...+        +|.
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--------SL~   73 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--------SLL   73 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--------cEE
Confidence            4445445678999999999765444448999997211    11 0             11333344333        899


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC-ceEEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG-GSEGVIKVY   94 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~   94 (158)
                      |.+++.+|+|.|+|.+.+... .....+.|.
T Consensus        74 I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          74 IQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            999999999999999998763 334455553

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.98  E-value=5.5e-09  Score=64.13  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             EEecCCCEEEEeEE-e----ecCCCeeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHV-E----SYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        10 ~~~~g~~v~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+..|....|.|.- .    ..+.|.+.|+|+ +..+.... ++......       +.|.|.++..+|+|.|+|.+.+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGS-------TYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCC-------CEEEEEEcChhhCEEEEEEEEEe
Confidence            45678899999973 2    346679999999 87775443 33221111       25999999999999999999998


Q ss_pred             CCce
Q psy16261         84 LGGS   87 (158)
Q Consensus        84 ~g~~   87 (158)
                      .|..
T Consensus        78 ~~g~   81 (95)
T cd05897          78 HEGK   81 (95)
T ss_pred             eCCE
Confidence            7655

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.95  E-value=9e-09  Score=63.72  Aligned_cols=77  Identities=13%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             eEEEecCCCEEEEeEEe-----------ecCCCeeEEEcCCCeeeecC-------CeEEEEEeecccceEEEEEEEcCCC
Q psy16261          8 LIGARLAAPLTLDCHVE-----------SYPKPITFWTHENGSLIHEG-------SRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~-----------g~p~p~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ...+.+|+.+.|.|...           ......+.|+|+ +......       .|+.....         .|.|..+.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~-~~~~~~~~~~~~~~~Ri~~~~~---------~Lwf~Pa~   78 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS-SGDGEEPIEIIFDGVRMSKEED---------SIWFRPAE   78 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEEC-CCCCCCCCcccccceeEEEeCC---------EEEEEeCC
Confidence            45688999999999961           112347899999 5333221       13333322         59999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         70 KSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      .+|+|.|+|.+.|.-......+.|.
T Consensus        79 ~eDSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          79 LQDSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             hhhCeEEEEEECCCCcceEEEEEEE
Confidence            9999999999999865555555544

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.94  E-value=4.3e-09  Score=61.21  Aligned_cols=71  Identities=30%  Similarity=0.442  Sum_probs=46.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+.......+. +.|.|.+.+.+ .+.+.|+.. .............        ..+.|.|.++..+|.|.|+|.|
T Consensus         4 I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~--------~~~~L~i~~v~~~~~g~y~C~a   73 (75)
T PF13927_consen    4 ISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRGSSS--------SNSTLTISNVTRSDNGTYTCIA   73 (75)
T ss_dssp             EEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEEEEE--------EEEEEEESSCCGGGTEEEEEEE
T ss_pred             EEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeeeccc--------eeeEEEEccCCHHhCcEEEEEE
Confidence            34444444333333 99999999988 779999922 1111111111111        2347999999999999999999


Q ss_pred             Ec
Q psy16261         81 KN   82 (158)
Q Consensus        81 ~n   82 (158)
                      .|
T Consensus        74 ~N   75 (75)
T PF13927_consen   74 SN   75 (75)
T ss_dssp             EE
T ss_pred             EC
Confidence            87

...

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.94  E-value=6.6e-09  Score=73.74  Aligned_cols=88  Identities=22%  Similarity=0.312  Sum_probs=60.5

Q ss_pred             ceEEEecCCCEEEEeEEeecC-----------CCeeEEEcCCCeee--e-cCCeE---EEEEeecccceEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYP-----------KPITFWTHENGSLI--H-EGSRY---HMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p-----------~p~i~W~~~~~~~~--~-~~~~~---~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ..+.+.+|+.+.|.|.+.+.|           .+.+.|+|. +...  . .+.+.   .+....  .......|.|.+++
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~-~s~~~v~~~~~~~~~~~i~~~~--~~~r~~~L~I~~v~  106 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT-DSLAFVRDSGARTKIKKITHNE--IGDRSENLWIGNVI  106 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeC-CeEEEEEcCCCccccccccccc--eecCCCeEEECCCC
Confidence            456789999999999997754           348999999 4331  1 11110   000000  00012379999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         70 KSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .+|+|.|+|.|.|..+.....+.|.|..
T Consensus       107 ~~DsG~Y~C~a~N~~~~~~~~i~L~V~~  134 (227)
T PHA02826        107 NIDEGIYICTISSGNICEESTIRLTFDS  134 (227)
T ss_pred             hHHCEEEEEEEEECCcceEEEEEEEEec
Confidence            9999999999999988877778777744

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.92  E-value=1.6e-08  Score=63.54  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC-e-e---ee--------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-S-L---IH--------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-~-~---~~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ..++..+.+.+|+++.|.|.+.+.+...+.|++... . .   +.        ..+|+.+.....   ....+|.|.+++
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~~~   78 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS---RKSSSLHISAAQ   78 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc---CCEEEEEECCCC
Confidence            456777889999999999999988888999987521 1 0   10        124554433210   123479999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy16261         70 KSDFGTYKCNAKNTL   84 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~   84 (158)
                      .+|+|.|.|.+.+..
T Consensus        79 ~~DsG~Y~C~~~~~~   93 (109)
T cd04983          79 LSDSAVYFCALSESG   93 (109)
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.92  E-value=2.8e-08  Score=62.29  Aligned_cols=85  Identities=22%  Similarity=0.395  Sum_probs=56.3

Q ss_pred             cCCCEEEEeEEeecC------CCeeEEEcCC--C--e-ee-e-cCCeEEEE------EeecccceEEEEEEEcCCCCCCC
Q psy16261         13 LAAPLTLDCHVESYP------KPITFWTHEN--G--S-LI-H-EGSRYHMW------TEKFSSYKFYMRLYIGSLSKSDF   73 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p------~p~i~W~~~~--~--~-~~-~-~~~~~~~~------~~~~~~~~~~~~l~i~~v~~~d~   73 (158)
                      .|+++.|.|.....+      ...+.|++..  .  . .+ . .+.+....      ...........+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987753      4589999861  1  1 11 1 11111110      00000111346899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEec
Q psy16261         74 GTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        74 G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877778888888765

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.92  E-value=1.5e-08  Score=63.99  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC-ee---ee-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-SL---IH-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-~~---~~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ...|..+.+.+|+++.|.|.+.+ +.+.+.|++... ..   +.             ..+|+........    ...|.|
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I   76 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLT----RSSLTI   76 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCC----ccEEEE
Confidence            34667788999999999999988 778999998621 11   10             0134433322111    247999


Q ss_pred             cCCCCCCCeEEEEEEEcCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+++.+|+|.|.|.+.+..
T Consensus        77 ~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          77 KSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CCCChhhCEEEEEEeeCCC
Confidence            9999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4194|consensus

Probab=98.91  E-value=3.6e-09  Score=82.82  Aligned_cols=142  Identities=10%  Similarity=0.121  Sum_probs=91.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCCCeeeec-----CCeEEEEEee---cccceEEEEEEEcCCCCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHENGSLIHE-----GSRYHMWTEK---FSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d   72 (158)
                      ...|..+.+..|+++.|.|.+.+.  .+-.+.|.++ .+....     .-++......   ++.....+.|.+.+|...|
T Consensus       507 ~~qPe~~~al~g~nirftC~a~sssasplsi~WR~d-nevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td  585 (873)
T KOG4194|consen  507 VTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKD-NEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTD  585 (873)
T ss_pred             ecCchHhhhhhccceEEEEEeccCCCCCceeEeeec-cccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeeccc
Confidence            345555667789999999999883  3448889998 443221     1111111100   1122234579999999999


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEeccCCC------------------------CCc----------ccch---------
Q psy16261         73 FGTYKCNAKNTLGGS-EGVIKVYNIGYFGS------------------------DTQ----------YVTD---------  108 (158)
Q Consensus        73 ~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~------------------------~~~----------~~~~---------  108 (158)
                      .|.|+|++.|.+|+. +..+.|.|-..|.-                        |.+          ..+.         
T Consensus       586 ~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm  665 (873)
T KOG4194|consen  586 EGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM  665 (873)
T ss_pred             CceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence            999999999999987 44555555443311                        111          0011         


Q ss_pred             -----hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        109 -----EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       109 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                           -.+...+..|.|.|       +|.|.|..|....++.++|-+.|
T Consensus       666 pedd~f~Itnvk~eD~GiY-------tC~A~n~AG~isanAtL~V~e~p  707 (873)
T KOG4194|consen  666 PEDDVFFITNVKIEDQGIY-------TCTAQNVAGQISANATLTVLETP  707 (873)
T ss_pred             CCCCEEEEeccccccccee-------EEeeeccccceeeceEEEEecCC
Confidence                 12223456677888       99999999999999999976554

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.87  E-value=2.7e-08  Score=59.08  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=49.1

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      +.|.|...+ .|.+.++|+++ ++.+.....   ....+..+...+.|.|.-....|.+.|.|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~-~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRD-RKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEEC-CEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999855 78889999999 877743211   01111223445679999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.83  E-value=2.1e-08  Score=61.18  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=49.5

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.. .+..|+++.|.|... .+...+.|+++ +...... ..   .    .....+.|.|.+++.+|+|.|+|...+
T Consensus         6 ~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~-g~~~~~~-~~---~----~~~~~~~f~i~~v~~~~~G~Y~C~~~~   74 (91)
T cd05751           6 WAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYRE-GSTFAVK-KP---P----EPQNKAKFFIPSMKREHAGRYRCYYRS   74 (91)
T ss_pred             EecCCC-ccCCCCcEEEEEecC-CCCCEEEEEEC-CCCcccc-cc---C----CCceeEEEEccCCChhHCEEEEEEEEC
Confidence            444544 378999999999885 56778889998 5532211 00   0    011224799999999999999999988


Q ss_pred             C
Q psy16261         83 T   83 (158)
Q Consensus        83 ~   83 (158)
                      .
T Consensus        75 ~   75 (91)
T cd05751          75 G   75 (91)
T ss_pred             C
Confidence            6

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.83  E-value=6.7e-08  Score=60.53  Aligned_cols=81  Identities=22%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             cCCCEEEEeEEeecC------CCeeEEEcCCCe-----e-eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESYP------KPITFWTHENGS-----L-IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p------~p~i~W~~~~~~-----~-~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .|+++.|.|.....|      ...+.|+|....     . +..           ..|+.+...    .....+|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA----HDLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC----CCCcEEEEEccCC
Confidence            488999999987653      347999986211     1 111           122222111    0123579999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         70 KSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .+|+|.|.|.+.+..+.....+.|.|.+
T Consensus        77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          77 LEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            9999999999999988888888888765

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.82  E-value=7.6e-08  Score=60.96  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             cCCCEEEEeEEeecC------------CCeeEEEcCC-C---eeee-cC----------CeEEEEEeecccceEEEEEEE
Q psy16261         13 LAAPLTLDCHVESYP------------KPITFWTHEN-G---SLIH-EG----------SRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p------------~p~i~W~~~~-~---~~~~-~~----------~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .|+++.|.|......            .+.+.|+|.. +   ..+. ..          .|+.+....  ......+|.|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence            489999999997643            4689999851 1   1111 11          244333210  0112358999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.+........+.|.|.+
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999999998777777777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.81  E-value=4.8e-08  Score=59.46  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCee----ee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSL----IH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |++|.|.|.........+.|+++....    +.             ...|+.+...        .+|.|.+++.+|+|.|
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--------~sL~I~~l~~~DsG~Y   72 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--------GSLLIQNLTKEDSGTY   72 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--------ceEEEccCCchhcEEE
Confidence            789999999887667799999873211    10             0123333222        3899999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEE
Q psy16261         77 KCNAKNTLGGS-EGVIKVY   94 (158)
Q Consensus        77 ~C~a~n~~g~~-~~~~~l~   94 (158)
                      .|.+....+.. ...+.|.
T Consensus        73 ~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          73 TLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             EEEEEcCCCcEEEEEEEEE
Confidence            99999876443 4445443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.79  E-value=1.2e-07  Score=58.66  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=51.8

Q ss_pred             CCCEEEEeEEeecCC---CeeEEEcCCCee-e--ecC-------------CeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261         14 AAPLTLDCHVESYPK---PITFWTHENGSL-I--HEG-------------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus        14 g~~v~l~C~~~g~p~---p~i~W~~~~~~~-~--~~~-------------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      |+++.|.|.......   ..+.|++..... +  ...             +|+.+....  ......+|.|.+++.+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL~I~~v~~~D~G   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDA--IAEGSVALRIHNVRASDEG   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeeccc--ccCCcEEEEEEcCChhhCE
Confidence            688999999864322   267898763211 1  000             233221110  0112357999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy16261         75 TYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        75 ~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      .|.|.+.|..+..+..+.|.|
T Consensus        79 ~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          79 LYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEecCCcEEEEEEEEEE
Confidence            999999998777777787766

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.76  E-value=8.9e-08  Score=60.02  Aligned_cols=77  Identities=17%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-C---eeee-c--------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-G---SLIH-E--------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~---~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +...|..+.+.+|+++.|.|.+.+.. ...+.|++.. +   ..+. .        ..++......     ....|.|.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~   77 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSG-----TDFTLTISR   77 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccC-----CEEEEEECC
Confidence            55667778899999999999997765 5689998752 1   1111 0        1234332211     124699999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy16261         68 LSKSDFGTYKCNAKNT   83 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~   83 (158)
                      ++.+|+|.|.|.+.+.
T Consensus        78 ~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          78 VEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CChHHCEEEEEEEeCC
Confidence            9999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.73  E-value=9.4e-08  Score=58.51  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=55.3

Q ss_pred             ecCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         12 RLAAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..|+.+.|.|.+.|. |. ..++|+++ +..+..... .......++.|...+.|.+......|.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKN-GKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEEC-CEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999998 53 58999999 777655433 334444445677777888877777799999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.71  E-value=1.1e-07  Score=59.25  Aligned_cols=73  Identities=22%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             EEecCCCEEEEeEEeec-CCCeeEEEcCCC----eeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261         10 GARLAAPLTLDCHVESY-PKPITFWTHENG----SLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      .+.+|+.+.|.|.+... +...+.|++...    ..+.            ...|+.+.....   ....+|.|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHHH
Confidence            46789999999999886 677899988522    1111            113444333221   123479999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy16261         73 FGTYKCNAKNTLG   85 (158)
Q Consensus        73 ~G~Y~C~a~n~~g   85 (158)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998764

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.68  E-value=7.3e-07  Score=56.32  Aligned_cols=83  Identities=20%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             cCCCEEEEeEEeecC----------CCeeEEEcCC-Cee--ee--cC----------CeEEEEEeecccceEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYP----------KPITFWTHEN-GSL--IH--EG----------SRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p----------~p~i~W~~~~-~~~--~~--~~----------~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .|+++.|.|.....+          ...+.|+|.. ++.  +.  .+          +|+.+....  .-....+|.|.+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~--~~~~~asL~I~~   78 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP--ENRGDASLEISR   78 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC--CCCCcEEEEECC
Confidence            489999999997654          2578999852 111  10  11          233221110  011235799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      ++.+|+|.|.|.+.......+..+.|.|.+
T Consensus        79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999999998777778888888865

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.68  E-value=5e-07  Score=55.63  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             CCEEEEeEEeecC---CCeeEEEcCCCe---ee--e---------c--CCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261         15 APLTLDCHVESYP---KPITFWTHENGS---LI--H---------E--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus        15 ~~v~l~C~~~g~p---~p~i~W~~~~~~---~~--~---------~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +++.|.|.....+   ...+.|+|....   .+  .         .  ..|.......    ....+|.|.+++.+|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I~~v~~~D~G~   76 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS----LEDATISISNLRLEDEGN   76 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC----CCceEEEEccCCcccCEE
Confidence            4689999997754   347999986321   10  0         0  0121111100    023589999999999999


Q ss_pred             EEEEEEc-CCCceEEEEEEEE
Q psy16261         76 YKCNAKN-TLGGSEGVIKVYN   95 (158)
Q Consensus        76 Y~C~a~n-~~g~~~~~~~l~v   95 (158)
                      |.|.+.+ ..|.....+.|.|
T Consensus        77 Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          77 YICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEEEeCCCCcEEEEEEEEe
Confidence            9999875 6677787777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.67  E-value=9.7e-07  Score=56.26  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC----CCeeEEEcC-C-------------Ceeee-cC----CeEEEEEeecccceEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHE-N-------------GSLIH-EG----SRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~-~-------------~~~~~-~~----~~~~~~~~~~~~~~~~~~   62 (158)
                      +..+.+..|+.+.|.|......    ...+.|... .             +.... ..    +|+....   +......+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS   81 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS   81 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence            3456788999999999997643    348899332 1             11111 00    1222211   11223468


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      |.|.+++.+|.|.|+|.+.|.-+..
T Consensus        82 I~I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          82 IVIHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             EEEccCCcccCEEEEEEEEcCCCcC
Confidence            9999999999999999999986543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.66  E-value=2e-07  Score=59.37  Aligned_cols=76  Identities=21%  Similarity=0.354  Sum_probs=52.7

Q ss_pred             ecCceEEEecCCCEEEEeEEee--cCCCeeEEEcCC--Cee---ee-------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVES--YPKPITFWTHEN--GSL---IH-------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g--~p~p~i~W~~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+++.|.|.+.+  .+.+.+.|++..  ..+   +.             ...|+.+.....   .....|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L   79 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG---KSTSTL   79 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC---CCEEEE
Confidence            3566778899999999999987  677889999851  111   10             123444432221   013479


Q ss_pred             EEcCCCCCCCeEEEEEEEc
Q psy16261         64 YIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEECCHHHCEEEEEEEec
Confidence            9999999999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.61  E-value=8.6e-07  Score=52.97  Aligned_cols=68  Identities=12%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             EEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         17 LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        17 v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.|.|.+.+. |.+.++|+++ +..+.... .......+..|...+.|.+......+.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~-~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKG-DKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEEC-CEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999775 8889999999 77765332 1222112234556667777666666678999999997554

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.61  E-value=1.3e-06  Score=55.69  Aligned_cols=80  Identities=21%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC----CCeeEEEcC---CCe--eee-c--------CCeEE--EEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHE---NGS--LIH-E--------GSRYH--MWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~---~~~--~~~-~--------~~~~~--~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+++.|.|.....+    ...+.|++.   ++.  .+. .        .+++.  ....+ +.....++|.|
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~I   83 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASILI   83 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEEE
Confidence            5567899999999999986543    236899742   111  111 0        11221  11000 11112357999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCc
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>KOG4222|consensus

Probab=98.60  E-value=7.2e-08  Score=79.88  Aligned_cols=85  Identities=26%  Similarity=0.466  Sum_probs=69.3

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEe-ecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTE-KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ++....+..|..+.|.|.+.|.|.|.+.|.|. +..+. ..|+.+... .        +|.|..++..|.|.|.|.+.|.
T Consensus       231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~-~~~~P-~~ry~i~~d~q--------tl~i~r~tp~deg~y~C~a~n~  300 (1281)
T KOG4222|consen  231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD-DPSLP-RSRYSILDDTQ--------TLRIDRVTPTDEGTYVCPAENL  300 (1281)
T ss_pred             ccccceeecccccccccccCCCCCCceeeecc-CCCCC-ccceeeeeccc--------cccccccCCCcccceeeecccc
Confidence            34456688899999999999999999999997 44443 245555544 4        7999999999999999999999


Q ss_pred             CCceEEEEEEEEeccC
Q psy16261         84 LGGSEGVIKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~   99 (158)
                      +|...+...|.|...+
T Consensus       301 vG~l~asa~ltV~apP  316 (1281)
T KOG4222|consen  301 VGGLEASATLTVQAPP  316 (1281)
T ss_pred             ccccccccceEEecCc
Confidence            9999888888877765

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.59  E-value=4.3e-07  Score=56.06  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             cCCCEEEEeEEee-cCCCeeEEEcCCCeeee-cC------------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261         13 LAAPLTLDCHVES-YPKPITFWTHENGSLIH-EG------------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      .|++|.|.|.... .....+.|++. ...+. ..            +++.....-   .....+|.|.+++.+|+|.|.|
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~-~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFN-TSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecC-CEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence            6999999998855 44558899987 33221 11            111110000   0112479999999999999999


Q ss_pred             EEEcCCCce-EEEEEEEE
Q psy16261         79 NAKNTLGGS-EGVIKVYN   95 (158)
Q Consensus        79 ~a~n~~g~~-~~~~~l~v   95 (158)
                      .+.+..|.. ...+.|.|
T Consensus        79 ~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          79 EINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEcCCCCeEEEEEEEEe
Confidence            999887654 44555544

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.58  E-value=9.6e-07  Score=55.36  Aligned_cols=91  Identities=21%  Similarity=0.306  Sum_probs=58.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCC----eeee---c-----------CCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENG----SLIH---E-----------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~~   62 (158)
                      ++.++..+.+.+|+++.|.|... ......+.|++...    ..+.   .           ..++.+.....   ....+
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~s   80 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS---QNNFS   80 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT---TTEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc---CCeEE
Confidence            34557788899999999999999 44566899988522    1111   0           12222222221   11347


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCC-CceEEEEEEEE
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTL-GGSEGVIKVYN   95 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~v   95 (158)
                      |.|.+++.+|+|.|.|.+.... ......+.|.|
T Consensus        81 L~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   81 LTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             EEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999999998872 22233455543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.53  E-value=2.4e-06  Score=51.15  Aligned_cols=68  Identities=9%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             EEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         17 LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        17 v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.|.|.+.|. |.+.|+|+++ +..+.... ........ ..|...+.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~-g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKG-DQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEEC-CEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6899999885 8889999999 77665432 23333332 24555677877666677778899999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.51  E-value=2.7e-06  Score=54.14  Aligned_cols=77  Identities=21%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             CceEEEecCCCEEEEeEEeecC----CCeeEEEcCCC-----ee-eec---------CCeE----EEEEeecccceEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHENG-----SL-IHE---------GSRY----HMWTEKFSSYKFYMR   62 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~~-----~~-~~~---------~~~~----~~~~~~~~~~~~~~~   62 (158)
                      |..+.+.+|+.+.|.|......    ...+.|++...     .. +..         .+++    ....   +.-...++
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~s   81 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVG---NPSRKDAS   81 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEec---CCcCCeeE
Confidence            5566788999999999986543    24688975311     11 110         1111    1111   11112357


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.|.+++.+|.|.|.|.+.|.-.
T Consensus        82 L~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          82 IVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EEEeeCCcccCEEEEEEEEeCCC
Confidence            99999999999999999998644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.50  E-value=3.4e-06  Score=53.25  Aligned_cols=83  Identities=20%  Similarity=0.348  Sum_probs=54.6

Q ss_pred             cCCCEEEEeEEeecC-------CCeeEEEcCC----Cee---ee-cC----------CeEEEEEeecccceEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYP-------KPITFWTHEN----GSL---IH-EG----------SRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p-------~p~i~W~~~~----~~~---~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .|+.+.|.|...-.|       .+.+.|.+..    ...   +. .+          +|..+....  .-....+|.|.+
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~--~~~~~asL~i~n   78 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP--KNRYNASLVLSR   78 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC--CCCceEEEEECC
Confidence            378899999976433       3689998751    111   10 11          233332211  112346899999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      ++.+|+|.|.|.+.......+..+.|.|.+
T Consensus        79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999999766667788888765

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.49  E-value=4.5e-06  Score=49.73  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVY   94 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~   94 (158)
                      +.|.|.+.| .|.+.|+|+++ +..+.....  ............++|.|.--...|...|+|.|.|..-.. .....|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~-~~~l~~~~~--~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKG-NKELTGKST--VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEEC-CEECcCccc--ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            689999877 57779999999 777644311  111111234455678886666666777999999975432 4455555


Q ss_pred             Ee
Q psy16261         95 NI   96 (158)
Q Consensus        95 v~   96 (158)
                      |.
T Consensus        79 V~   80 (82)
T cd05883          79 VQ   80 (82)
T ss_pred             EE
Confidence            54

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.49  E-value=1.7e-06  Score=51.86  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +.|.|.+.| .|...++|+++ +..+............+..|...+.|.+..-...+...|+|.+.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kn-g~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKN-DKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEEC-CEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999988 66778999999 777654332222233334566677888875556667789999998744

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.46  E-value=1.2e-06  Score=54.10  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEeEEeec--CCCeeEEEcCCC-ee---ee---------cCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261         10 GARLAAPLTLDCHVESY--PKPITFWTHENG-SL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~-~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      .+.+|+++.|.|...+.  ....+.|++... ..   +.         ..+|+......     ....|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-----NTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCChhhCE
Confidence            36789999999998775  556799987521 11   11         01244443322     2347999999999999


Q ss_pred             EEEEEEEcC
Q psy16261         75 TYKCNAKNT   83 (158)
Q Consensus        75 ~Y~C~a~n~   83 (158)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999988753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.45  E-value=2.6e-06  Score=54.18  Aligned_cols=79  Identities=19%  Similarity=0.349  Sum_probs=53.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +...+..+.+.+|+++.|.|..... ....+.|++.. +.   .+.         ..+|+.+....   .....+|.|.+
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   78 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQK---AQKSISLTISA   78 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEec---cCCEEEEEECC
Confidence            3456677889999999999998764 45679998751 11   111         12455544211   01134799999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy16261         68 LSKSDFGTYKCNAKNT   83 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~   83 (158)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          79 LQLEDSAKYFCALSTL   94 (116)
T ss_pred             CCHHHCEEEEEEEECC
Confidence            9999999999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.45  E-value=5.5e-06  Score=49.60  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=52.3

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+..|+++.|.|.....+.|  .++|...++.......    ...        -+|.+..+...|+|.++|.+....-..
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~----~~~--------ktL~~~qv~~qdSG~WtC~V~~~~k~~   77 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN----QDK--------KTLNLVQLGPNDSGTWDCIVSVNSSEK   77 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc----CCc--------cEEEeceeCcccCCEEEEEEEECceEE
Confidence            57899999999999665555  9999877444332110    011        169999999999999999997654444


Q ss_pred             EEEEEEEEe
Q psy16261         88 EGVIKVYNI   96 (158)
Q Consensus        88 ~~~~~l~v~   96 (158)
                      .+.+.+.|.
T Consensus        78 ~~~~~V~Vl   86 (88)
T cd07694          78 TLKLDIKVL   86 (88)
T ss_pred             EEEeeEEEE
Confidence            555555554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.44  E-value=8.7e-06  Score=51.77  Aligned_cols=82  Identities=20%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             CCCEEEEeEEeecCC-----------CeeEEEcCC----C-----eee--ecC----------CeEEEEEeecccceEEE
Q psy16261         14 AAPLTLDCHVESYPK-----------PITFWTHEN----G-----SLI--HEG----------SRYHMWTEKFSSYKFYM   61 (158)
Q Consensus        14 g~~v~l~C~~~g~p~-----------p~i~W~~~~----~-----~~~--~~~----------~~~~~~~~~~~~~~~~~   61 (158)
                      |.++.|.|...-.|.           ..|.|++-.    +     ..+  ..+          +|..+....  ......
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~--~~~g~a   79 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHP--EDQGDA   79 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccC--CcCCce
Confidence            678999999986542           389997640    1     111  111          233322111  111246


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      +|.|.+++.+|.|.|.|.+.+........+.|.|.+
T Consensus        80 sL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          80 SLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            899999999999999999999888788888888765

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.43  E-value=8e-06  Score=50.57  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy16261         60 YMRLYIGSLSKSDFGTYKCNAKN-TLGGSEGVIKVYN   95 (158)
Q Consensus        60 ~~~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v   95 (158)
                      .++|.|.+++.+|.|.|.|.+.+ ..|+.+..+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            46899999999999999999999 6887788888776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.41  E-value=4.3e-06  Score=51.50  Aligned_cols=78  Identities=22%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CCCEEEEeEEeecCC-CeeEEEcCCCe---eee---c----------CCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261         14 AAPLTLDCHVESYPK-PITFWTHENGS---LIH---E----------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus        14 g~~v~l~C~~~g~p~-p~i~W~~~~~~---~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |+++.|.|....... -.+.|+|..+.   .+.   .          ..|+.....    -...++|.|.+++.+|+|.|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~nv~~~D~G~Y   76 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL----GLNSTSITIWNVTLEDEGCY   76 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC----CCCccEEEEeCCceeeeEEE
Confidence            789999998755433 26899875221   110   0          012211111    11245799999999999999


Q ss_pred             EEEEE-cCCCceEEEEEEEE
Q psy16261         77 KCNAK-NTLGGSEGVIKVYN   95 (158)
Q Consensus        77 ~C~a~-n~~g~~~~~~~l~v   95 (158)
                      .|.+. ...|.....+.|.|
T Consensus        77 ~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          77 KCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEEEeCCCCCeeeEEEEEE
Confidence            99987 45677677777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.40  E-value=7.4e-06  Score=50.79  Aligned_cols=77  Identities=23%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             CEEEEeEEeecC---CCeeEEEcCCCe----ee---ec--C--------CeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261         16 PLTLDCHVESYP---KPITFWTHENGS----LI---HE--G--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus        16 ~v~l~C~~~g~p---~p~i~W~~~~~~----~~---~~--~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      ++.|.|......   ...+.|+|....    .+   ..  +        +|.+....   .....++|.|.+++.+|+|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~---~~~~~~sL~I~nv~~sD~Gt   78 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETP---NPIADGALILRNAVQADEGK   78 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCC---CCCCceEEEEecCccccceE
Confidence            689999987554   347889885211    11   10  1        22222211   11124579999999999999


Q ss_pred             EEEEEEc-CCCceEEEEEEEE
Q psy16261         76 YKCNAKN-TLGGSEGVIKVYN   95 (158)
Q Consensus        76 Y~C~a~n-~~g~~~~~~~l~v   95 (158)
                      |.|.+.+ ..|..++.+.|.|
T Consensus        79 Y~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          79 YKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEEEeCCCCCeeeEEEEEe
Confidence            9999997 6776677777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.33  E-value=3.7e-06  Score=51.57  Aligned_cols=71  Identities=17%  Similarity=0.272  Sum_probs=46.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..++..+ +..|++++|.|.... ....+.|+|+ +.....  .+ ....  ......+.+.|..++.+|+|.|.|...
T Consensus         5 ~a~p~~v-V~~G~~VTL~C~~~~-~~~~f~l~k~-g~~~~~--~~-~~~~--~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           5 SAHPSPV-VPSGENVTLQCHSDI-RFDRFILYKE-GRSKPV--LH-LYEK--HHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EecCCCc-cCCCCeEEEEEecCC-CCCEEEEEEC-CCCCCc--ee-cccc--cCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4445444 779999999998865 4567889998 433111  00 0000  001123479999999999999999875

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.30  E-value=1.1e-05  Score=49.66  Aligned_cols=73  Identities=16%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             EEEecCCCEEEEeEEee-cCCCeeEEEcCCCe----ee--------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261          9 IGARLAAPLTLDCHVES-YPKPITFWTHENGS----LI--------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +.+.+|+++.|.|.... .....+.|++....    .+        ....|+.+....   ......|.|.+++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP---DNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC---CCCEEEEEEcCCCHHHCEE
Confidence            35788999999999865 34567899987211    11        012344443221   1123479999999999999


Q ss_pred             EEEEEEcCC
Q psy16261         76 YKCNAKNTL   84 (158)
Q Consensus        76 Y~C~a~n~~   84 (158)
                      |.|.+....
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999887653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00096 Ig Immunoglobulin domain

Probab=98.30  E-value=1.4e-05  Score=44.65  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +.|.|.+.+.+...+.|+++ +......... ........+.....|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKN-GKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEEC-CEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899999877889999998 5443322111 001111233345579999999999999999998875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.28  E-value=9.1e-06  Score=50.98  Aligned_cols=71  Identities=15%  Similarity=0.281  Sum_probs=45.6

Q ss_pred             EEecCCCEEEEeEEeecC-CCeeEEEcCCCe----e----ee-c------------CCeEEEEEeecccceEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHVESYP-KPITFWTHENGS----L----IH-E------------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~----~----~~-~------------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+.+|+++.|.|.+.+.. ...+.|++....    .    +. .            .+++.......   .....|.|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD---SSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC---CCEEEEEECC
Confidence            467899999999987643 457999876221    0    00 0            12333321110   0123699999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy16261         68 LSKSDFGTYKCNAKNT   83 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~   83 (158)
                      ++.+|+|.|.|...+.
T Consensus        79 ~~~~Dsg~YyCa~~~~   94 (107)
T cd07700          79 VKPEDSGTYFCMTVGS   94 (107)
T ss_pred             CCHHHCEEEEEeEcCC
Confidence            9999999999987643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.25  E-value=3.4e-05  Score=52.52  Aligned_cols=88  Identities=15%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             ceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeee---c--------CCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          7 QLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIH---E--------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      ..+.+.+|+++.|.|... +...+.+.|+|.+.....   .        ..|+......    ...+.|.|.+++.+|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG   98 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence            356788999999999985 656789999987322111   0        1233221111    12357999999999999


Q ss_pred             EEEEEEEc-CCC-ceEEEEEEEEecc
Q psy16261         75 TYKCNAKN-TLG-GSEGVIKVYNIGY   98 (158)
Q Consensus        75 ~Y~C~a~n-~~g-~~~~~~~l~v~~~   98 (158)
                      .|.|...- ..| ..+..+-|.|...
T Consensus        99 cY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         99 CYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEEEEEecCCCCCceeEEEEEEEch
Confidence            99998764 455 5566666766654

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.24  E-value=1.3e-05  Score=49.54  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             ecCceEEEecCCCEEEEeEEee-cCCCe--eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVES-YPKPI--TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCN   79 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~   79 (158)
                      +.++...+.+|+.+.|.|.+.| .|.+.  +.|+++ +..+.... +... .. ......++|.+. +.++|.| .|.|.
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG-~~~l~~~~-~~~~-~~-~~~~~~stlt~~-~~r~D~g~~~sC~   80 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG-NETLSRQP-FGDN-TK-SPVNAPATITIT-VDREDHGANFSCE   80 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeC-CEEcccce-eccc-cC-CCceeEEEEEEe-cchhhCCcEEEEE
Confidence            3333344689999999999977 56665  699999 77664321 1110 00 111223456665 4455555 79999


Q ss_pred             EEcCCCc
Q psy16261         80 AKNTLGG   86 (158)
Q Consensus        80 a~n~~g~   86 (158)
                      |.+..+.
T Consensus        81 A~l~l~~   87 (100)
T cd05755          81 TELDLRP   87 (100)
T ss_pred             EEeccCc
Confidence            9987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.23  E-value=2.5e-05  Score=45.77  Aligned_cols=67  Identities=19%  Similarity=0.312  Sum_probs=46.7

Q ss_pred             EEEEeEEeec-CC-CeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         17 LTLDCHVESY-PK-PITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        17 v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +.|.|.+.|. |. ..+.|+++ +..+..+.. .......++.|...+.|.+......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~-g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRN-GQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEEC-CEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999996 44 48899999 775433321 12223344677778888887767777789999997653

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.23  E-value=2.9e-05  Score=47.76  Aligned_cols=77  Identities=21%  Similarity=0.373  Sum_probs=50.7

Q ss_pred             CCEEEEeEEeecC-CCeeEEEcCCC---eeee-c----C--------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261         15 APLTLDCHVESYP-KPITFWTHENG---SLIH-E----G--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus        15 ~~v~l~C~~~g~p-~p~i~W~~~~~---~~~~-~----~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      +++.|.|.....+ ...+.|.|...   ..+. .    +        +|.......    ...++|.|.+++.+|.|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~----~~d~sl~i~nv~~~D~G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYS----LLDATIMLENVGFSDIGVYI   76 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCC----CCccEEEEeCCCccccEEEE
Confidence            3689999987533 33888987522   1111 0    1        233332111    12458999999999999999


Q ss_pred             EEEE-cCCCceEEEEEEEE
Q psy16261         78 CNAK-NTLGGSEGVIKVYN   95 (158)
Q Consensus        78 C~a~-n~~g~~~~~~~l~v   95 (158)
                      |.+. ...|+..+.+.|.|
T Consensus        77 C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          77 CKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEEeCCCCCeeEEEEEEE
Confidence            9975 56888888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.21  E-value=1.8e-05  Score=50.61  Aligned_cols=76  Identities=12%  Similarity=0.137  Sum_probs=49.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecC------CCeeEEEcCCCe----e-ee--c---------CCeEEEEEeecccceEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP------KPITFWTHENGS----L-IH--E---------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p------~p~i~W~~~~~~----~-~~--~---------~~~~~~~~~~~~~~~~~~~   62 (158)
                      .|+.+.+.+|+.+.|.|......      ...+.|++....    . ..  .         .+|+.+..   +.....++
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~---~~~~~~~s   81 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG---DLGKKNCS   81 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec---CCCCCEEE
Confidence            35667899999999999875322      246889976211    1 11  0         12333321   11123468


Q ss_pred             EEEcCCCCCCCeEEEEEEEcC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.|.+++.+|+|.|.|.+...
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            999999999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.18  E-value=3.6e-05  Score=50.52  Aligned_cols=73  Identities=21%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             EecCCCEEEEeEEeec-CC-CeeEEEcCCCeeee-----cCC-eE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261         11 ARLAAPLTLDCHVESY-PK-PITFWTHENGSLIH-----EGS-RY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~-----~~~-~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ...|+.+.|.|.+.|. |. ..+.|+++ +....     ... .+ ......++.|...+.|.+..-...+...|.|.+.
T Consensus        50 ~~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~  128 (139)
T cd05771          50 SMIEEPQTLICHIAGYYPLDVQVEWTRE-PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVS  128 (139)
T ss_pred             eecCCcEEEEEEECCCCCCCeEEEEEEC-CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEE
Confidence            3367889999999996 43 38999999 53211     111 11 1223344567777888887666566778999998


Q ss_pred             cCC
Q psy16261         82 NTL   84 (158)
Q Consensus        82 n~~   84 (158)
                      +..
T Consensus       129 H~~  131 (139)
T cd05771         129 HVS  131 (139)
T ss_pred             cCC
Confidence            753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.17  E-value=3.4e-05  Score=46.52  Aligned_cols=72  Identities=17%  Similarity=0.282  Sum_probs=45.6

Q ss_pred             CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |+.+.+.|.+ .++|.|.++|+.+ +..+...............+...+.|.+..-...+...++|.+.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLD-GGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEET-TCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEEC-CCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            6799999966 5588899999999 5544111111222222244555567887655555667789999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.12  E-value=1.9e-05  Score=49.26  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCe---e---ee-c--------------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGS---L---IH-E--------------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~---~---~~-~--------------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +.+|+++.|.|.........+.|++....   .   +. .              ..++......     ....|.|.+++
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~   77 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-----NSFVLTLKNFQ   77 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-----CEEEEEECCCC
Confidence            56899999999986655567999876211   1   11 0              1122221111     23479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|+|.|.|.+.+
T Consensus        78 ~sDsgtY~Ca~~~   90 (104)
T cd05720          78 KENEGYYFCSVAS   90 (104)
T ss_pred             HHHCEEEEEEEcc
Confidence            9999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.06  E-value=6.5e-05  Score=45.86  Aligned_cols=68  Identities=19%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ++.+.|.|.+.|. |.+ .++|.++ +....... ........++.|...+.|.+..-   +...|+|.+.+..-
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRD-GEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEEC-CEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCCC
Confidence            6789999999995 444 8899999 64322221 11233344456666667777653   67899999987643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.05  E-value=0.00013  Score=46.10  Aligned_cols=71  Identities=13%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             EecCCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESYPK--PITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFG-TYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~~   84 (158)
                      ...|+.+.|.|.+.|.-+  ..++|++| +..+.... ......++ +.|...+.|.+.. ...|.| .|.|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kn-g~~~~~~~-~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKN-GNELSAEQ-PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEEC-CEECcccc-cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            446888999999999543  37899999 87765432 12222333 3677777787775 344444 4999998864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.05  E-value=6.8e-05  Score=46.11  Aligned_cols=75  Identities=27%  Similarity=0.382  Sum_probs=47.4

Q ss_pred             CCEEEEeEEee-cCCCeeEEEcCCC---eeee-----cC--------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261         15 APLTLDCHVES-YPKPITFWTHENG---SLIH-----EG--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus        15 ~~v~l~C~~~g-~p~p~i~W~~~~~---~~~~-----~~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      +.+.|.|.... .....+.|.|.++   ..+.     .+        +|+......    ...++|.|.+++.+|.|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~   76 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC   76 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence            46889999854 2345788987522   1111     01        233222111    12358999999999999999


Q ss_pred             EEEEc-CCCceEEEEEE
Q psy16261         78 CNAKN-TLGGSEGVIKV   93 (158)
Q Consensus        78 C~a~n-~~g~~~~~~~l   93 (158)
                      |.+.. ..|...+.+.+
T Consensus        77 C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          77 CSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             EEEEeCCCCCeEEEEEE
Confidence            99876 47777776665

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.99  E-value=0.00018  Score=42.85  Aligned_cols=69  Identities=22%  Similarity=0.364  Sum_probs=48.7

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEE-eecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWT-EKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .++.+.|.|.+.+. |.. .+.|+++ +..+.......... ..++.|...+.|.+.   ..+...|.|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~-~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKN-GKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEET-TEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEec-cceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            37889999999995 433 6889999 77765543332222 345678888888888   4445579999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.98  E-value=8.5e-05  Score=47.38  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=48.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCCC-e-e--e---ec-----------CCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHENG-S-L--I---HE-----------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~-~-~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .|..+.+.+|+++.|.|...+..  ...+.|++... . +  +   ..           ..|+.......   .....|.
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~   79 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS---KSTVYLQ   79 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc---CCEEEEE
Confidence            45566789999999999986543  45789987521 1 1  1   00           12333332210   0123699


Q ss_pred             EcCCCCCCCeEEEEEEEc
Q psy16261         65 IGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.+++.+|+|.|.|.+..
T Consensus        80 I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          80 LNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ECCCCHHHCEEEEEEEEc
Confidence            999999999999998765

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.92  E-value=0.00012  Score=44.90  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             cCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         13 LAAPLTLDCHVESY-PK-PITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+.+.|.|.+.|. |. -.++|.++ +..+..+ .........++.|...+.|.+..-.-.+...|.|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~d-g~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVD-GQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEEC-CEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45679999999995 43 37789999 7765332 111122223346777777877644434567899999876433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.86  E-value=0.00026  Score=43.26  Aligned_cols=67  Identities=15%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|+...|.|.+.|.-++  .++|+++ |..+...........++..|...+.|.+.   ..+...|.|.+...
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~   82 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHN   82 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEEC
Confidence            45567899999995444  6789999 87765222233445555667766777766   45666799999875

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.80  E-value=0.00016  Score=44.53  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             cCceEEEecCCCEEEEeEEeec-CCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY-PKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~-p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +|....+..++.+.|.|.+.|. -++  .++|.++++........ ......++.|...+.|.+..-.-.+.-.|.|.+.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~   83 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT   83 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence            3333335568899999999998 333  67899983333221111 1122333557666777776433233446999998


Q ss_pred             cCC
Q psy16261         82 NTL   84 (158)
Q Consensus        82 n~~   84 (158)
                      ...
T Consensus        84 H~~   86 (96)
T cd07696          84 HPD   86 (96)
T ss_pred             CCC
Confidence            764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.80  E-value=0.00075  Score=41.31  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=46.3

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..++.+.|.|.+.|.-++  .++|+++ +..+... ........++..|...+.|.+..   .+...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKN-GQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEEC-CeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            357889999999995444  6789999 7765443 11233334444576667776653   45568999998764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.77  E-value=5.2e-05  Score=49.73  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=34.0

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      +|.|.+++..|.|.|.|.+.+..|.....+.|.|...|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P   39 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP   39 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC
Confidence            69999999999999999999988888888888887654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.76  E-value=0.00051  Score=42.15  Aligned_cols=70  Identities=6%  Similarity=0.007  Sum_probs=43.3

Q ss_pred             CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .....+.|.+ .|.|.+.|+|+++ ...   ..........++.+...+.|.+.-....+...|+|.+.+..-..
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~-~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETT-LGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeC-CCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            3456888998 6789999999987 211   11111112221335556677775555556667999999976433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.76  E-value=9.8e-05  Score=45.76  Aligned_cols=73  Identities=15%  Similarity=0.304  Sum_probs=47.8

Q ss_pred             EecCCCEEEEeEEeec-C-CCeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESY-P-KPITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ...++.+.|.|.+.|. | ...+.|+++ +..+..+.. .......++.|...+.|.+..-.-.+...|+|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVD-GATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEEC-CEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            3457789999999994 4 337889999 776643311 11222334567777778775554445678999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.74  E-value=0.0006  Score=41.76  Aligned_cols=67  Identities=21%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .++...|.|.+.|. |.. .++|.++ |..+..+. .......+++.|...+.|.+..   .+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~-g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKN-GVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEEC-CeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence            35568999999994 433 6789999 77665432 2233445556677777887754   3456899999875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00406 IGv Immunoglobulin V-Type

Probab=97.72  E-value=0.00019  Score=41.99  Aligned_cols=61  Identities=23%  Similarity=0.398  Sum_probs=38.3

Q ss_pred             CEEEEeEEeecCCC--eeEEEcCCC-e---eee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261         16 PLTLDCHVESYPKP--ITFWTHENG-S---LIH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus        16 ~v~l~C~~~g~p~p--~i~W~~~~~-~---~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      ++.|.|.......+  .+.|++... .   .+.             ...|+......   -....+|.|.+++.+|+|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~i~~~~~~D~G~Y   77 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT---SKNDVSLTISNLRVEDTGTY   77 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC---cCCEEEEEEcCCCHHHCEEE
Confidence            47899998776554  788987521 1   111             01333333221   01234799999999999999


Q ss_pred             EEE
Q psy16261         77 KCN   79 (158)
Q Consensus        77 ~C~   79 (158)
                      .|.
T Consensus        78 ~C~   80 (81)
T smart00406       78 YCA   80 (81)
T ss_pred             EEc
Confidence            995

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.72  E-value=9e-05  Score=46.11  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=45.9

Q ss_pred             EecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEE--EEEe--ecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYH--MWTE--KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +..++.+.|.|.+.|..++  .++|+++ +..+.......  ....  +++.|...+.|.+..-.-.+...|+|.+....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~-g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQN-GQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEEC-CEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            3457889999999995544  5689999 77654322111  1111  13557777778774433334557999988753

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.69  E-value=0.00045  Score=42.48  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+..+.|.|.+.|.-++  .++|.++ |..+..+.. ......+ +.|...+.|.+..-..  ...|+|.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kn-g~~~~~~~~~~~~~~~~-dty~~~S~L~vt~~~~--~~~ysC~V~H~   84 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREG-NSPSILGSQKSEKDKDN-DVYSTTSWLTVTKDSL--GKKFRCIYKHE   84 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEEC-CEECcCCeEeccEecCC-CEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence            45678999999995444  6789999 776544322 2223333 3676677787764422  23499999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA03376 BARF1; Provisional

Probab=97.66  E-value=0.0044  Score=42.55  Aligned_cols=73  Identities=19%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             eEEEecCCCEEEEeEEeec---CCCeeEEEcCC---Ce-eeec------------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          8 LIGARLAAPLTLDCHVESY---PKPITFWTHEN---GS-LIHE------------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~---~~-~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+..|+++.|.|.....   +.-.+.|+|.+   .. .+..            ..++.+....     .+.+|.|.++
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-----gnvsLvI~~l   94 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-----NTFFLVVTAA   94 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-----CeEEEEEEee
Confidence            4557789999999987632   33478899941   11 1111            1222221111     2347999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy16261         69 SKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g   85 (158)
                      +.+|.|.|.|.++....
T Consensus        95 ~lSDdGtY~C~fQkge~  111 (221)
T PHA03376         95 NISHDGNYLCRMKLGET  111 (221)
T ss_pred             eecCCceEEEEEEcCCC
Confidence            99999999999986543

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.62  E-value=0.0014  Score=40.22  Aligned_cols=71  Identities=6%  Similarity=-0.012  Sum_probs=43.0

Q ss_pred             CCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         15 APLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        15 ~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      ....+.|.+. |.|.+.|+|+++ ....   .........+..+...+.|.+.--...|...|+|.+.+..-....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~-~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSST-LGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcC-CCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            3578899875 688889999987 2211   111111111123444567777555555667799999997644433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.52  E-value=0.00061  Score=43.31  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEEcCCCc
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAKNTLGG   86 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~n~~g~   86 (158)
                      ..+..+.|.|.+.|.-+.  .+.|+++ +..+..+...  ......++.|...+.|.+..-.-.+ ...|.|.+......
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kn-g~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVN-GKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEEC-CEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            356679999999995444  7889999 7766543211  1112212467777788877554333 45799999876444


Q ss_pred             eE
Q psy16261         87 SE   88 (158)
Q Consensus        87 ~~   88 (158)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            43

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA02633 hypothetical protein; Provisional

Probab=97.38  E-value=0.00095  Score=37.15  Aligned_cols=38  Identities=21%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      .|.|.++..+|+|.|.|..+|..-....++.|.|....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            59999999999999999999986666777777776543

>KOG3515|consensus

Probab=97.25  E-value=0.00026  Score=57.77  Aligned_cols=78  Identities=24%  Similarity=0.306  Sum_probs=56.2

Q ss_pred             EEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-
Q psy16261         10 GARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-   87 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-   87 (158)
                      .+.+|+.|.|.|.+.++|++ .+.|++. .....  .|+......        .|.+....+...+.|.|.+.|..+.. 
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~-~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~c~a~ns~~~~~   86 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHS-TSGEH--GRYATIADP--------TLVTTGDVRDTVAELNCRAFNSVGMPS   86 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEec-Ccccc--cccccccCC--------ceeeecchhhhhhhhhhhhcccccCce
Confidence            67899999999999987755 8999999 55443  333333333        68888888888899999999986654 


Q ss_pred             EEEEEEEEecc
Q psy16261         88 EGVIKVYNIGY   98 (158)
Q Consensus        88 ~~~~~l~v~~~   98 (158)
                      ...+.+.+.+.
T Consensus        87 ~~~~~l~v~~~   97 (741)
T KOG3515|consen   87 RCPMILDVDYP   97 (741)
T ss_pred             ecceeeccccC
Confidence            33444444443

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.24  E-value=0.0033  Score=38.56  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..+.+.|.|.+.|.-+.  .++|.++ +.. ..+.. .......++.|...+.|.+..-.-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~-g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSG-SNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeEC-CEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999995443  6789999 775 33211 11111213567767777766432122456999998753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.22  E-value=0.006  Score=38.60  Aligned_cols=74  Identities=9%  Similarity=0.037  Sum_probs=46.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeeee--------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLIH--------------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      +++....+..|..+.|.|.+.|....   .+.|.+.....+.              ...++.+......   ....|.|.
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~---ntv~L~l~   79 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN---EQVNFTLQ   79 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC---CEEEEEEc
Confidence            34445567889999999999775433   5778875211110              1123333322211   23479999


Q ss_pred             CCCCCCCeEEEEEE
Q psy16261         67 SLSKSDFGTYKCNA   80 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a   80 (158)
                      +++.+|.+.|.|..
T Consensus        80 ~L~a~DTa~Y~Ca~   93 (115)
T cd05721          80 NLRANQTDIYFCKI   93 (115)
T ss_pred             CCCHHHCeEEEEEe
Confidence            99999999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.09  E-value=0.001  Score=47.64  Aligned_cols=49  Identities=22%  Similarity=0.419  Sum_probs=42.9

Q ss_pred             CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         28 KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        28 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      -|.+.|.-.++..+....++.++..+        .|.+.+...+++|.|+|..+...
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence            57889998878888888899999888        89999999999999999987543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.01  E-value=0.0052  Score=35.03  Aligned_cols=49  Identities=20%  Similarity=0.413  Sum_probs=35.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...|.|.|..    ...+.|+++ .......       ..        .|.+..+.....|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~kG-~~~~~~~-------~~--------tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKKG-KEILEVS-------NT--------LLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEecC-ccccccc-------cc--------EEeccCcccCCCcceEecCcc
Confidence            4468999966    245999995 5543222       11        588888888999999998877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.90  E-value=0.024  Score=34.85  Aligned_cols=74  Identities=11%  Similarity=0.011  Sum_probs=46.4

Q ss_pred             eEEEecCCCEEE-EeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          8 LIGARLAAPLTL-DCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         8 ~~~~~~g~~v~l-~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+.+.+|+.+.+ .|.+ .|.|.+.|+|+.+ .....   .........+.+...+.+.+..-...|.-.++|.+....-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~-~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETN-VYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCC-CCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            345778888888 7775 6688889999977 32211   1111111112444556677765556677779999988743

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.88  E-value=0.0034  Score=38.79  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             EecCCCEEEEeEEeecC--CC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESYP--KP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p--~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ...+..+.|.|.+.+.-  .. .+.|.++ +..  ...........++.|...+.|.+..-.-.....|+|.+....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~-g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPS-GGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEEC-Ccc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            33577899999999944  32 7889999 543  111111112223567777778766322222345999998763

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.82  E-value=0.0027  Score=35.88  Aligned_cols=53  Identities=17%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ...|.+|.|.|......   +.|.++ ...+.....               .+...+-. ++.|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~~~---i~W~~n-~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSGDD---IKWKKN-DQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCCCC---ceEEeC-CccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence            35688999999876332   999999 544332211               12223333 7899999998654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG1480|consensus

Probab=96.47  E-value=0.0015  Score=53.27  Aligned_cols=83  Identities=24%  Similarity=0.388  Sum_probs=60.1

Q ss_pred             EEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+..+..+.+.|.. .+.|...++|+++ +..+.+...+......        .++|.-+...|.|+|+|.+.|.++..
T Consensus       139 q~V~~~s~~~l~cr~pe~~paae~~w~k~-e~~~~pd~n~~~~~d~--------~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  139 QEVQEETTLQLPCRPPEGDPKAEVEWLKN-EVVIDPDANVIRASDH--------NLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             heecccccccccccCcccchhhhhhcccc-CCCCCccccchhhhcC--------Cccccchhhhhcccceeeeehhhccc
Confidence            346667778888764 7788889999999 7777665444333333        68999999999999999999998876


Q ss_pred             ---EEEEEEEEeccCC
Q psy16261         88 ---EGVIKVYNIGYFG  100 (158)
Q Consensus        88 ---~~~~~l~v~~~~~  100 (158)
                         ...+.+.|.....
T Consensus       210 ~~~~~~v~vyv~ggws  225 (909)
T KOG1480|consen  210 KSDPATVQVYVNGGWS  225 (909)
T ss_pred             cccceEEEEEEcCccc
Confidence               3345555555443

>KOG4597|consensus

Probab=96.22  E-value=0.0087  Score=46.41  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=59.0

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcC--CCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHE--NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +-++++..++|-+.|.+.+.++|.+-  ++..+..... +..  +.-.+..++.|.|-+-...|+|.|+|.+.+..|...
T Consensus       208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~--e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTV--ENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             cccchhhcccccccCCcCceeeeehhhccccceeecCc-ccc--CCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            55788999999999999999999643  0221111100 000  001122345799999999999999999999999988


Q ss_pred             EEEEEEEecc
Q psy16261         89 GVIKVYNIGY   98 (158)
Q Consensus        89 ~~~~l~v~~~   98 (158)
                      ..+.+.+...
T Consensus       285 rdv~c~s~~g  294 (560)
T KOG4597|consen  285 RDVPCSSVKG  294 (560)
T ss_pred             ccceeeeecc
Confidence            8877765543

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.05  E-value=0.0034  Score=37.75  Aligned_cols=41  Identities=10%  Similarity=0.063  Sum_probs=35.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDP  155 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (158)
                      .+.+......|.|.|       .|.|.|..|.......|.|.++|..|
T Consensus        48 ~L~I~~~~~~D~G~Y-------tC~A~N~~G~~~~~~~L~V~~~P~~P   88 (88)
T cd05735          48 TLQILPTVREDSGFF-------SCHAINSYGEDRGIIQLTVQEPPDPP   88 (88)
T ss_pred             EEEECCCCcccCEEE-------EEEEEcCCCcceEEEEEEEeCCCCCC
Confidence            455556667889999       99999999999999999999998877

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=95.74  E-value=0.0058  Score=37.56  Aligned_cols=42  Identities=12%  Similarity=0.076  Sum_probs=36.4

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPV  156 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (158)
                      .+.+......|.|.|       +|.+.|..|....++.|.|-++|++|+
T Consensus        57 ~L~I~~~~~~D~G~Y-------tc~a~N~~G~~~~~~~l~V~~~P~pP~   98 (98)
T cd05762          57 KLTITEGQQEHCGCY-------TLEVENKLGSRQAQVNLTVVDKPDPPA   98 (98)
T ss_pred             EEEECCCChhhCEEE-------EEEEEcCCCceeEEEEEEEecCCCCCC
Confidence            345566678889999       999999999999999999989998884

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.33  E-value=0.01  Score=38.37  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             EecCCCEEEEeEEeec-----CCCeeEEEcCCCeeee-c-CCeEEEEEee------cccceEEEEEEEcCCCCCCCeEEE
Q psy16261         11 ARLAAPLTLDCHVESY-----PKPITFWTHENGSLIH-E-GSRYHMWTEK------FSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~-~-~~~~~~~~~~------~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      ..-.++|.|+|.+...     +.-.+.|..+ +..+. . +.........      .......++|.|.....- .|+|+
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~-~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFK-NKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEET-TEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEEC-CeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            4457889999999652     2236889988 55432 1 1111110000      012223446777764444 89999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy16261         78 CNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~   96 (158)
                      |.+.......+..+.|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9999887777777777653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=95.20  E-value=0.14  Score=35.80  Aligned_cols=73  Identities=15%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             EEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecC------------------CeEEEEEeecccceEEEEEEEcCCCC
Q psy16261         10 GARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEG------------------SRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ....++.+.|.|...... ..+..|+++++..+...                  ..+.++..+     ..|+|+|+++..
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-----~~STLTIkk~~i  109 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-----NSSTFTMKKPDP  109 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-----cceeEEeccCCc
Confidence            345689999999953322 34677998766554310                  112222222     246899999999


Q ss_pred             CCCeEEEEEEEcCCCce
Q psy16261         71 SDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~   87 (158)
                      +..|-|+|.+....+..
T Consensus       110 ~N~GCYtc~~ks~~~k~  126 (251)
T PHA02982        110 QNLGCFTCEAKDAEGKE  126 (251)
T ss_pred             ccCCceEEEEecCCCch
Confidence            99999999998865443

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.70  E-value=0.18  Score=31.06  Aligned_cols=71  Identities=21%  Similarity=0.257  Sum_probs=38.4

Q ss_pred             EecCCCEEEEeEEee-cCC--CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVES-YPK--PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~~   84 (158)
                      ..+|..+.+.|.+.+ .|.  ..+.|+++ ...+............ ......+.+.|.- .++|.| +|.|.|.-.+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG-~~~l~~~~f~~~~~~k-s~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKG-ETLLPSKSFLEDMDKK-SLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecC-cceecccccccccccC-CCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            468999999999976 444  36889887 5544332111000000 0000011344443 366666 7999987543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03042 CD47-like protein; Provisional

Probab=94.64  E-value=0.31  Score=35.47  Aligned_cols=73  Identities=14%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             EecCCCEEEEeEEeec-----CCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESY-----PKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..-.+++.++|....-     ..-.+.|..+ +..+. .++. ..           ++|.+.--. .-.|+|+|.|.+..
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~-~~~If~~n~t-n~-----------aSL~~~f~~-~l~GNYTCEv~~l~   93 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFN-NKVIFKKNNT-NT-----------SSLKFNFSK-NLSGNYTCEAINKF   93 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeC-CeeEEEecCC-cc-----------eEEEEeccc-cCCCceeEEEeecc
Confidence            4457889999998653     3457899999 55443 2221 11           256554333 33799999999876


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      ......+.|....
T Consensus        94 n~gk~~IeLk~~~  106 (286)
T PHA03042         94 NKIKNTIELQYVI  106 (286)
T ss_pred             cCccEEEEEEEEE
Confidence            6666666665553

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.28  E-value=0.38  Score=30.01  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNI   96 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~   96 (158)
                      .|.|+.++..|+|.|.-.+.+..|.. ...+.+.|.
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            69999999999999999999999987 334666553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.08  E-value=0.37  Score=29.41  Aligned_cols=72  Identities=10%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             EEEEeE-EeecCCCeeEEEcCC-CeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         17 LTLDCH-VESYPKPITFWTHEN-GSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        17 v~l~C~-~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      +.-.|. +.|.|+..|+|..+- |..     .++.....++....++.+.+--....|.-..+|.+....-....++.|
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            455788 688999999997541 111     111111221233344455555555667777899998764444444544

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.74  E-value=0.81  Score=27.04  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=23.3

Q ss_pred             EEEEcCCCCCCCeEEEEEE-EcCCCceEEEEEEEE
Q psy16261         62 RLYIGSLSKSDFGTYKCNA-KNTLGGSEGVIKVYN   95 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v   95 (158)
                      .+........|+|.+.|.| .+..-.......|.+
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4667778889999999999 555433444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.26  E-value=1.1  Score=27.06  Aligned_cols=65  Identities=15%  Similarity=0.310  Sum_probs=40.6

Q ss_pred             ceEEEecCCCEEEEeEEeec-----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESY-----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +...+..|+.+...|.....     ....+.|..+ +. ..+.++++.....      .+++++.+......-.|-|.
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln-~~-~iP~~qy~~in~~------~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLN-GE-KIPGSQYRVINDT------VSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECS-SC-ESTCGCEEEESTT------EEEEEESS--SSEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEEC-CE-ECChhHcceeCCe------EEEEEEccCCCCCceEEEEE
Confidence            33348899999999998542     4558999998 66 4445555555443      35788887766555556565

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=93.25  E-value=0.048  Score=32.47  Aligned_cols=37  Identities=5%  Similarity=0.012  Sum_probs=30.9

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      +.+......|.|.|       .|.|.|..|....++.|.|-.||
T Consensus        49 L~I~~v~~~D~G~Y-------tC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          49 LVIVNAQLSHAGTY-------TCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EEEccCChhhCeEE-------EEEEecCCCCEEEEEEEEEECCC
Confidence            44555667889999       99999999999999999986654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=92.79  E-value=0.065  Score=31.12  Aligned_cols=33  Identities=9%  Similarity=0.061  Sum_probs=28.0

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.|.|..|....++.|.|
T Consensus        43 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          43 LLIQGATKEDAGWY-------TVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEECCCCHHHCEEE-------EEEEEcCCCEEEEEEEEeC
Confidence            34566778899999       9999999999999988764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=91.83  E-value=0.092  Score=31.04  Aligned_cols=38  Identities=11%  Similarity=0.079  Sum_probs=31.7

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      .+.+......+.|.|       .|.+.|..|....++.|.|-.||
T Consensus        48 ~L~I~~v~~~D~G~Y-------~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          48 DLMIRNAQLKHAGKY-------TCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             eEEEccCCHHhCeee-------EEEEecCCCcEEEEEEEEEECCC
Confidence            355666677899999       99999999999999999986664

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=91.82  E-value=0.1  Score=30.35  Aligned_cols=33  Identities=6%  Similarity=0.039  Sum_probs=28.0

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|.....+.|.|
T Consensus        43 L~I~~~~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          43 LLIKNVNKKDAGWY-------TVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEECCCChhhCEEE-------EEEEEcCcCeEEEEEEEeC
Confidence            45566778899999       9999999999999988764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.70  E-value=1.4  Score=33.28  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=38.1

Q ss_pred             CEEEEeEEeecCCC--eeEEEcC--------CC---eeeecCC---------eEEEEEeec-ccceEEEEEEEcCCCCCC
Q psy16261         16 PLTLDCHVESYPKP--ITFWTHE--------NG---SLIHEGS---------RYHMWTEKF-SSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus        16 ~v~l~C~~~g~p~p--~i~W~~~--------~~---~~~~~~~---------~~~~~~~~~-~~~~~~~~l~i~~v~~~d   72 (158)
                      .+.|.|.|.|.-+.  .++|.++        .+   ..+..+.         ...+...++ +.|+....+.   +...+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~---v~~~~  292 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVR---VPTDM  292 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEE---eCCCC
Confidence            47999999996554  6679998        12   1111110         011344444 3565555554   34556


Q ss_pred             CeEEEEEEEcC
Q psy16261         73 FGTYKCNAKNT   83 (158)
Q Consensus        73 ~G~Y~C~a~n~   83 (158)
                      ...|+|.+...
T Consensus       293 ~~~Y~C~V~Hs  303 (338)
T PHA02865        293 SNQIVCVVFHS  303 (338)
T ss_pred             CCCcEEEEEeC
Confidence            66799999875

>PHA03052 Hypothetical protein; Provisional

Probab=91.36  E-value=1.1  Score=25.49  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=27.2

Q ss_pred             CceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCeee
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLI   41 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~   41 (158)
                      |..+.+..|+.+.+.|.+.-.+   .+.+.|..| +..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N-~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISN-GMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeC-CcEE
Confidence            3667788999999999995543   347889988 7666

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=91.29  E-value=0.064  Score=32.20  Aligned_cols=33  Identities=6%  Similarity=-0.058  Sum_probs=27.5

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.|.|..|....++.|+|
T Consensus        57 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          57 LYLRNVSFDDAGEY-------TCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             EEEeccccccCcEE-------EEEeecccCcccCCEEEEe
Confidence            34444567899999       9999999999999998876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=91.18  E-value=0.1  Score=31.21  Aligned_cols=38  Identities=8%  Similarity=0.086  Sum_probs=31.8

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      .+.+......+.|.|       +|.+.|..+....++.|.|-.||
T Consensus        48 ~L~I~nv~~~dsG~Y-------tC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          48 DLMIRSIQLKHAGKY-------VCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             cEEEecCCHHHCEEE-------EEEEEcccCceEEEEEEEEecCC
Confidence            355566677888999       99999999999999999987665

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=90.88  E-value=0.13  Score=29.61  Aligned_cols=33  Identities=9%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|+|
T Consensus        41 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          41 LEILNITKLDEGSY-------TCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             EEECcCChhHCEEE-------EEEEECCCCceeEEEEEEC
Confidence            55666678889999       9999999999999988864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=90.21  E-value=0.18  Score=29.12  Aligned_cols=33  Identities=9%  Similarity=0.048  Sum_probs=27.8

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+.+....|.|.|       .|.+.|..|....++.|.|
T Consensus        43 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          43 LLIQNANKEDAGWY-------TVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEECCCCcccCEEE-------EEEEEcCCCcEEEEEEEeC
Confidence            45567778999999       9999999999999887754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=89.65  E-value=0.11  Score=31.19  Aligned_cols=34  Identities=6%  Similarity=-0.054  Sum_probs=29.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....+++|.|
T Consensus        56 ~L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          56 VLYLRNVTFEDAGEY-------TCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             EEEEccCCHHHCEEE-------EEEEEeCCCcccceEEEEE
Confidence            456677788899999       9999999999999998875

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=88.29  E-value=0.24  Score=29.54  Aligned_cols=36  Identities=11%  Similarity=0.098  Sum_probs=30.1

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDP  151 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~  151 (158)
                      +.+......|.|.|       .|.+.|..|.....+.|.|.+.
T Consensus        49 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~~~   84 (90)
T cd05726          49 LTITNVQRSDVGYY-------ICQTLNVAGSILTKAYLEVTDV   84 (90)
T ss_pred             EEEeeCChhhCEEE-------EEEEEcCCCceEEEEEEEEeec
Confidence            45556667888999       9999999999999999998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=88.02  E-value=0.26  Score=28.21  Aligned_cols=33  Identities=9%  Similarity=0.086  Sum_probs=26.9

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        42 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          42 LRISRVALHDQGQY-------ECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             EEEeeCCHHhCEEE-------EEEEEeCCCceeEEEEEeC
Confidence            45556667888999       9999999999988887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=87.93  E-value=1.6  Score=25.48  Aligned_cols=32  Identities=0%  Similarity=-0.060  Sum_probs=26.0

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccc
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPI  146 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  146 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|
T Consensus        53 ~L~I~~v~~~DsG~Y-------~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          53 ILTIRNVQLSDAGTY-------VCTGSNMLDTDEATATL   84 (85)
T ss_pred             EEEECCCCHHHCEEE-------EEEEeccCCeEeEEEEE
Confidence            355666678888999       99999999999888765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=87.73  E-value=0.35  Score=27.44  Aligned_cols=29  Identities=7%  Similarity=-0.017  Sum_probs=24.2

Q ss_pred             hhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        113 RTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       113 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .....|.|.|       .|.+.|..|....++.|.|
T Consensus        43 ~v~~~D~G~Y-------~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          43 GLVKSDEGFY-------QCIAENDVGNVQASAQLII   71 (71)
T ss_pred             cCCcccCEEE-------EEEEEcCCCEEEEEEEEEC
Confidence            4456788899       9999999999999887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=87.53  E-value=0.27  Score=29.92  Aligned_cols=33  Identities=6%  Similarity=-0.002  Sum_probs=27.0

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+.+|.|
T Consensus        66 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          66 LHIKDVKLSDSGRY-------DCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeeCCcCCCEEE-------EEEEeccCCcceeEEEEeC
Confidence            45556667888999       9999999999988887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=87.20  E-value=0.35  Score=29.34  Aligned_cols=33  Identities=6%  Similarity=0.036  Sum_probs=26.9

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.|.|..|....+.+|.|
T Consensus        65 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          65 LTLKYIQYTDAGEY-------LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEecCccCcCEEE-------EEEEecCCCCeeEEEEEEC
Confidence            44555667888999       9999999999998888764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=86.76  E-value=0.4  Score=26.92  Aligned_cols=33  Identities=6%  Similarity=0.055  Sum_probs=26.0

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        37 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          37 LKIRNVTAGDEGSY-------TCEAENMVGKIEASASLTV   69 (69)
T ss_pred             EEECcCChhHCEEE-------EEEEEcCCCcEEEEEEEEC
Confidence            44555567788999       9999999999888877654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=86.26  E-value=11  Score=29.35  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=26.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEEecc
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNT-LGGSEGVIKVYNIGY   98 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~   98 (158)
                      ++.+.+++.+|.|.|.|...-. .-...+.+.+.|.+.
T Consensus        82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK  119 (500)
T PHA02914         82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK  119 (500)
T ss_pred             EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence            6889999999999999998743 333355566555443

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=85.91  E-value=0.4  Score=28.61  Aligned_cols=33  Identities=3%  Similarity=-0.021  Sum_probs=27.2

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.+.|
T Consensus        55 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          55 LKIFNIQPEDEGTY-------ECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEECcCChhhCEEE-------EEEEEcCCCceEEEEEEEE
Confidence            44556667888999       9999999999999888765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=85.32  E-value=0.45  Score=27.21  Aligned_cols=31  Identities=3%  Similarity=0.041  Sum_probs=25.0

Q ss_pred             hhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        111 MQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +......|.|.|       .|.+.|..|....++.|.|
T Consensus        44 I~~~~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          44 IVDVKIEDTGVY-------SCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EeeCCcccCEEE-------EEEEEcCCCEEEeeEEEEE
Confidence            344456788999       9999999999988887765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=85.32  E-value=0.48  Score=27.23  Aligned_cols=33  Identities=3%  Similarity=0.064  Sum_probs=26.2

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.+.|
T Consensus        43 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          43 LILTDVQPSDTAVY-------QCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             EEECCCChhhCEEE-------EEEEECCCCeEEEEEEEEE
Confidence            34445556788899       9999999999999888764

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=85.17  E-value=0.46  Score=28.13  Aligned_cols=34  Identities=9%  Similarity=0.022  Sum_probs=27.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|+|
T Consensus        54 ~L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          54 VLKIPNIQFEDEGTY-------ECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEEECCCCcccCEEE-------EEEEEECCCcEEEEEEEEE
Confidence            345556667888999       9999999999988888765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=85.15  E-value=0.43  Score=29.45  Aligned_cols=35  Identities=3%  Similarity=0.022  Sum_probs=29.0

Q ss_pred             chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        107 TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      ..+.+.+....|.|.|       +|.|.|..|.......|.|
T Consensus        65 ~~L~i~~v~~~D~G~Y-------tc~A~N~~G~~~~t~~L~V   99 (101)
T cd04975          65 SELKLVRLKESEAGTY-------TFLASNSDASKSLTFELYV   99 (101)
T ss_pred             EEEEEeecCHhhCeeE-------EEEEECCCccEEEEEEEEE
Confidence            4466777888999999       9999999999888777664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=84.95  E-value=0.55  Score=27.61  Aligned_cols=33  Identities=6%  Similarity=0.060  Sum_probs=25.6

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.|.|..|....+..+++
T Consensus        48 L~I~~~~~~D~G~Y-------tC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971          48 LQFDNPTHVNNGNY-------TLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEECCCCcccCeEE-------EEEEEeCCCCeeeEEEeee
Confidence            34445556788999       9999999999888776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=84.87  E-value=0.64  Score=26.81  Aligned_cols=33  Identities=6%  Similarity=0.090  Sum_probs=26.5

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..|.|
T Consensus        49 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          49 LVIYNAQPQDAGLY-------TCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             EEEccCCcccCEEE-------EEEEecCCceEEEEEEEeC
Confidence            45555667888999       9999999999888877654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=84.63  E-value=0.64  Score=26.44  Aligned_cols=33  Identities=9%  Similarity=0.123  Sum_probs=25.7

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..+.|
T Consensus        42 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          42 LVIKNAERSDSGKY-------TLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEECCCCcCcCEEE-------EEEEECCCccEEEEEEEEC
Confidence            44555667888999       9999999999888766643

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=84.08  E-value=0.59  Score=28.03  Aligned_cols=33  Identities=6%  Similarity=-0.007  Sum_probs=26.2

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+.+|.|
T Consensus        64 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          64 LTLKDVQLTDAGRY-------DCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEECcCCcCcCEEe-------EEEEEeCCCCcEEEEEEeC
Confidence            44555567888899       9999999999988877754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>KOG3515|consensus

Probab=84.07  E-value=3.5  Score=34.61  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEE-EEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR-LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      .+...|.+.+.|.+.+.|.|. ......+.++........ +...++ ..+..+-..|.+ ..|.+.|..|..-....+.
T Consensus       611 ~as~~~~a~~~~~~~~~~~k~-p~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~  687 (741)
T KOG3515|consen  611 NASDDCVASGVPSTSFTTAKT-PLQTTEGPHIREKATQQG-QTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIH  687 (741)
T ss_pred             cccccceecccccceeecccC-CCcccCCceEEEeeeecc-ccccccccccCCcchhhhc-ceeeecccCCCccccceec
Confidence            678899999999999999999 655555555444333322 333333 444555566666 8999999999876555543

>PHA03269 envelope glycoprotein C; Provisional

Probab=83.97  E-value=8.5  Score=30.70  Aligned_cols=71  Identities=21%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             EEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCC--CeEEEEEEE
Q psy16261         10 GARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSD--FGTYKCNAK   81 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d--~G~Y~C~a~   81 (158)
                      .+.+|+...-.|.+..+-+|   .+.|+.+ +..+.... +.......++....+|.|.+......|  --..+|.+.
T Consensus       338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n-g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~  414 (566)
T PHA03269        338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN-FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL  414 (566)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeC-CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence            36789999999999886544   7889999 65554321 112222333556677788775443333  345688775

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=83.93  E-value=0.51  Score=29.09  Aligned_cols=35  Identities=6%  Similarity=0.084  Sum_probs=29.4

Q ss_pred             chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        107 TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      ..+.+.+....|.|.|       +|.|.|..|....+..+.|
T Consensus        65 s~L~I~~v~~~D~G~Y-------tc~A~N~~g~~~~t~~l~V   99 (101)
T cd05859          65 SKLKLIRAKEEDSGLY-------TALAQNEDAVKSYTFALQI   99 (101)
T ss_pred             cEEEEeeCCHHHCEEE-------EEEEEcCCceEEEEEEEEE
Confidence            4567778888999999       9999999999888877664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=83.90  E-value=0.55  Score=26.29  Aligned_cols=33  Identities=3%  Similarity=0.053  Sum_probs=25.8

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..+.|
T Consensus        38 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          38 LKIDNVSEEDDGEY-------RCTASNSLGSARHTISVTV   70 (71)
T ss_pred             EEECCCCHHHCEEE-------EEEEEeCCceEEEEEEEEE
Confidence            45555667888999       9999999998887766654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=83.68  E-value=0.67  Score=26.07  Aligned_cols=31  Identities=10%  Similarity=0.132  Sum_probs=24.4

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccc
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPI  146 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  146 (158)
                      +.+......|.|.|       .|.+.|..|....+..|
T Consensus        38 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          38 LAIRDVGVADQGRY-------ECVARNTIGYASVSMVL   68 (69)
T ss_pred             EEECcCChhhCEEE-------EEEEECCCCcEEEEEEe
Confidence            34445557788999       99999999998887665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=83.55  E-value=0.62  Score=29.06  Aligned_cols=31  Identities=3%  Similarity=-0.058  Sum_probs=26.5

Q ss_pred             ccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261        116 QIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG  153 (158)
Q Consensus       116 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (158)
                      ..|.|.|       .|.|.|..|.......|.+..+|+
T Consensus        79 ~~D~G~Y-------~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          79 ALDYALF-------TCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             cCCCEEE-------EEEEEeCCccCcEEEEEEecCCCC
Confidence            3577788       999999999999999999887764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=83.45  E-value=0.62  Score=26.41  Aligned_cols=33  Identities=3%  Similarity=0.105  Sum_probs=25.5

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..+.|
T Consensus        38 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          38 LQLDNVLESDDGEY-------VCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             EEEcccCHHhCEEE-------EEEEEcCCCeEEEEEEEEE
Confidence            44455566788889       9999999999888776654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=83.24  E-value=0.55  Score=26.63  Aligned_cols=34  Identities=3%  Similarity=-0.069  Sum_probs=26.6

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+.+....|.|.|       +|.+.|..|...++..++|
T Consensus        32 ~L~i~~v~~~D~G~Y-------tC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863          32 SLQIKDVTEASAGTY-------TLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             EEEECCCCHHHCEEE-------EEEEEECCccEEEEEEEEE
Confidence            455566678899999       9999999998777766653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=82.87  E-value=0.72  Score=26.59  Aligned_cols=29  Identities=7%  Similarity=0.192  Sum_probs=24.5

Q ss_pred             hhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        113 RTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       113 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .....+.|.|       .|.+.|..|....++.|.|
T Consensus        47 ~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          47 KVQERSSAVY-------QCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCHhhCEEE-------EEEEEcCCCEEEEEEEEEe
Confidence            4456778888       9999999999999998875

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=82.79  E-value=0.68  Score=27.78  Aligned_cols=33  Identities=3%  Similarity=0.133  Sum_probs=26.1

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..|.|
T Consensus        60 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V   92 (95)
T cd05730          60 MTILDVDKLDEAEY-------TCIAENKAGEQEAEIHLKV   92 (95)
T ss_pred             EEECCCChhhCEEE-------EEEEEcCCCeEEEEEEEEE
Confidence            34445566788889       9999999999988887764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=82.54  E-value=0.79  Score=26.03  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=26.7

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        41 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          41 LEILNVTKSDEGKY-------TCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             EEEccCChhHCEEE-------EEEEECCCCceEEEEEEEC
Confidence            45556667888999       9999999999988877754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=82.35  E-value=0.71  Score=26.26  Aligned_cols=32  Identities=6%  Similarity=0.108  Sum_probs=25.1

Q ss_pred             hhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        110 EMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+......+.|.|       .|.+.|..|....++.++|
T Consensus        44 ~i~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          44 ILSNVQPNDTAVY-------QCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             EECCCChhhCEEE-------EEEEEccCCeEEEeEEEEE
Confidence            3444455778888       9999999999998888764

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=81.86  E-value=0.92  Score=26.90  Aligned_cols=34  Identities=6%  Similarity=-0.036  Sum_probs=26.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....+..|.|
T Consensus        53 ~L~I~~~~~~D~G~Y-------~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          53 SFVIEGAEREDEGVY-------TITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             EEEECCCccCcCEEE-------EEEEEeCCCcEEEEEEEEC
Confidence            345556677888999       9999999999887766543

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=81.23  E-value=0.64  Score=26.54  Aligned_cols=33  Identities=3%  Similarity=-0.090  Sum_probs=25.3

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..++|
T Consensus        36 L~I~~v~~~D~G~Y-------tC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864          36 LTIYEVTEKDAGNY-------TVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEECcCCHHHCEEE-------EEEEEECCCceeeEEEEEE
Confidence            34556667888999       9999999998777666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=81.23  E-value=0.91  Score=26.72  Aligned_cols=33  Identities=9%  Similarity=0.128  Sum_probs=26.1

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        53 L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          53 LRITKLSLSDSGMY-------QCVAENKHGTIYASAELAV   85 (85)
T ss_pred             EEEeeCCHHHCEEE-------EEEEECCCCeEEEEEEEEC
Confidence            34445556788889       9999999999998887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=80.15  E-value=1.2  Score=25.93  Aligned_cols=30  Identities=3%  Similarity=-0.018  Sum_probs=23.4

Q ss_pred             hhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        112 QRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       112 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      ......+.|.|       .|.+.|..|....+..|.|
T Consensus        56 ~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          56 ESVVPSDKGNY-------TCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             ccCCcccCEEE-------EEEEEeCCCEEEEEEEEEC
Confidence            33445677888       9999999999988877654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=80.02  E-value=0.83  Score=26.37  Aligned_cols=32  Identities=9%  Similarity=0.056  Sum_probs=24.1

Q ss_pred             hhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        110 EMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+......+.|.|       .|.+.|..|....++.++|
T Consensus        41 ~I~~~~~~D~G~Y-------~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760          41 TLRSAGPDDSGLY-------YCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             EEeeCCcccCEEE-------EEEEEeCCCeEeeCceEEE
Confidence            3444456788999       9999999998877666654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=80.02  E-value=1.1  Score=26.63  Aligned_cols=33  Identities=6%  Similarity=0.031  Sum_probs=25.5

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......+.|.|       .|.+.|..|....++.|.|
T Consensus        58 L~I~~v~~~D~g~Y-------~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          58 LQLSNITSETQTTV-------TCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEecCCcccCEEE-------EEEEECCCCceeEEEEEeC
Confidence            34445556678888       9999999999988877754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-05
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-04

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 1  MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
          +I  P + + A +    T  C VESYP+P   WT  N  LI       ++  ++S  +  
Sbjct: 9  VITTPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILI------KLFDTRYSIRENG 61
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGS 87
            L I S+  SD G Y C A N +GG+
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGA 88

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYM 61
          PS LI ++   P TL+C  E  P P   W ++ G  +    +  R H       S  F++
Sbjct: 16 PSDLIVSK-GEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLLPSGSL-FFL 72
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
          R+  G  S+ D G Y C A+N LG
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG 96

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9  IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
          +  R  +  TL C V  +PKPI  W  +   +I +G +Y +   K      Y +L I S+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 69
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
          +  D   Y+  A N  G   G
Sbjct: 70 TDDDATVYQVRATNQGGSVSG 90

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9  IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
          +  R  +  TL C V  +PKPI  W  +   +I +G +Y +   K      Y +L I S+
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 67
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
          +  D   Y+  A N  G   G
Sbjct: 68 TDDDATVYQVRATNQGGSVSG 88

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9  IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
          +  R  +  TL C V  +PKPI  W  +   +I +G +Y +   K      Y +L I S+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 69
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
          +  D   Y+  A N  G   G
Sbjct: 70 TDDDATVYQVRATNQGGSVSG 90

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYM 61
          PS LI ++   P TL+C  E  P P   W ++ G  +    +  R H       S  F++
Sbjct: 16 PSDLIVSK-GEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLLPSGSL-FFL 72
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
          R+  G  S+ D G Y C A+N LG
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG 96

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 11  ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
           A L+  +TL C  + +P+P   WT +   +  E +      EK+S       L I  + K
Sbjct: 25  ANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNE-----EKYSFNYDGSELIIKKVDK 79
Query: 71  SDFGTYKCNAKNTLGGSEGVI 91
           SD   Y C A+N  G  +  I
Sbjct: 80  SDEAEYICIAENKAGEQDATI 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-16
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-12
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-11
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-09
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-08
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	8e-13
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	9e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-10
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-12
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-10
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-12
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-12
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-11
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-11
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-10
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-10
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-10
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-10
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-10
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-08
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-06
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-08
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-07
2ens_A	96	Advanced glycosylation END product-specific recept	6e-09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-09
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	9e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-04
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	1e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-04

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 71.3 bits (175), Expect = 4e-17
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 6  SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYI 65
          + L          +   V+  PKP   W + NG++++E           +  +++  L +
Sbjct: 8  TFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCLQL 66

Query: 66 GSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           + +  + G Y   AKN  G  E  I  
Sbjct: 67 DNPTHMNNGDYTLIAKNEYGKDEKQISA 94

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 72.6 bits (178), Expect = 4e-16
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 1   MIVIPSQLIG--ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK 58
            +     ++   A L   +TL C  + +P+P   WT  +G  I          EK     
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDD---EKHIFSD 251

Query: 59  FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
               L I ++ K+D   Y C A+N  G  +  I +
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKF 59
           M          +      + C V S   P   W H+   +I +   R+ + +        
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------ 155

Query: 60  YMRLYIGSLSKSDFGTYKCNAKNTLGGS 87
              L I  + K+D GTY+C  +    G 
Sbjct: 156 --YLQIRGIKKTDEGTYRCEGRILARGE 181

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 17/89 (19%), Positives = 23/89 (25%), Gaps = 6/89 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEG-SRYHMWTEKFSSYKF 59
          + I        +       C V    K     W   NG  +     R  +      S   
Sbjct: 5  VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST- 63

Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
             L I + +  D G YKC      G   
Sbjct: 64 ---LTIYNANIDDAGIYKCVVTAEDGTQS 89

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 65.0 bits (159), Expect = 8e-15
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+  S+ I  +      L+      P P   WT    S         +  +  ++     
Sbjct: 5  ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSSTT----- 58

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           ++  S  ++D G YK   KN LG  E + +V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
                  +     A + L+C ++  P     W   +   +  G +Y + +E F +     
Sbjct: 195 FRKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLT----- 248

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            ++I ++  +D G Y+C A N +G    V  + 
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I         +       +C +   P+    W   + + I E S++ M   +  +     
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVA----- 155

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L + +LS  D G Y C A N  G
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAG 179

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +    +   L    T  CHV         W   +   I  G  Y M   + ++     
Sbjct: 8  FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA----- 61

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
           L +  ++K D G Y C A N  G
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAG 85

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L+C + + P P  FW   N  +     R  ++ +          L I  ++K D G 
Sbjct: 32 SVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV----TLLIKDVNKKDAGW 87

Query: 76 YKCNAKNTLG 85
          Y  +A N  G
Sbjct: 88 YTVSAVNEAG 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+   +    R    + L   V         W       I E     +   +  S     
Sbjct: 10 IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGS----- 63

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
          +L I +  +   G Y    +N LG  +  + +
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + L+C ++  P     W   +   +  G +Y + +E F +      ++I ++  +D G 
Sbjct: 401 DVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLT-----SIHILNVDSADIGE 454

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y+C A N +G    V  +
Sbjct: 455 YQCKASNDVGSDTCVGSI 472

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           P+  +C +         W   +G L+ + +          +      L I    +S  G 
Sbjct: 118 PVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFIHNVA-----TLQILQTDQSHVGQ 171

Query: 76  YKCNAKNTLGGSEGVIKVY 94
           Y C+A N LG +    K+ 
Sbjct: 172 YNCSASNPLGTASSSAKLT 190

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 61.0 bits (148), Expect = 9e-12
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             +    +   L    T  CHV         W   +   I  G  Y M   + ++     
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA----- 253

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L +  ++K D G Y C A N  G      ++
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            V     I   +   + L   +E        W  + G ++ E     +   +  +     
Sbjct: 480 FVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA----- 534

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L       ++ G Y C  KN  G  E    +
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I         +       +C +   P+    W   + + I E S++ M   +  +     
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVA----- 347

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L + +LS  D G Y C A N  G
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAG 371

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
          P+TL C V+  P+    W     + +     Y M  +   +      L I  +  SD G 
Sbjct: 22 PITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKMQFKNNVA-----SLVINKVDHSDVGE 75

Query: 76 YKCNAKNTLG 85
          Y C A+N++G
Sbjct: 76 YTCKAENSVG 85

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          + I    +   +       C     P+ I  W +  G  I    R  +  E   S     
Sbjct: 7  VTISLSKVELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRS----- 60

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGG---SEGVIKVY 94
          RL I + +  D G Y+C A +  G    +  V+++Y
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            +T  C     P+P   W   NG LI E  +Y +             L + ++  SD G 
Sbjct: 211 EMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTE-------LTVRNIINSDGGP 262

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A N  G  E    +
Sbjct: 263 YVCRATNKAGEDEKQAFL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
              + C V S P P   W + N  +      R+ M             L I +++KSD G
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--------NLQILNINKSDEG 166

Query: 75  TYKCNAKNTLGGS 87
            Y+C  +    G 
Sbjct: 167 IYRCEGRVEARGE 179

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +     + A     +++       P P+  W      LI     Y +      +  F  
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQV----IVTRSFTS 161

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            ++   + + D G Y   AKN  G
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFG 185

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            TL C V  +PKPI  W  +   +I +G +Y +   K   +    +L I S++  D   
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDATV 76

Query: 76 YKCNAKNTLG 85
          Y+  A N  G
Sbjct: 77 YQVRATNQGG 86

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            L L C+V   P P   W   N   +      ++  E   +        I  +S +D G 
Sbjct: 239 ALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFEAGRTA----YFTINGVSTADSGK 293

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y    KN  G       V
Sbjct: 294 YGLVVKNKYGSETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 55.3 bits (133), Expect = 7e-10
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           + L C V +  K     W   +   I    ++       +       L I   SK D G
Sbjct: 23 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 74

Query: 75 TYKCNAKNTLGGSEGVIKV 93
           Y+   K+  G  +  +K+
Sbjct: 75 IYEVILKDDRGKDKSRLKL 93

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 6/75 (8%)

Query: 19  LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
                         W+H NGS I    R                L I   + +D G Y  
Sbjct: 128 YSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKGKYVM 181

Query: 79  NAKNTLGGSEGVIKV 93
              +   G +  + +
Sbjct: 182 ELFDGKTGHQKTVDL 196

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 7  QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
           L    L     ++  V   P P   W H NG  + E    H+   +         L   
Sbjct: 13 SLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGEISEGC-LLFN 70

Query: 67 SLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            +  + G Y   AKN LG +   I  
Sbjct: 71 KPTHYNNGNYTLIAKNPLGTANQTING 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 4e-13
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             +D  V   P P   W   NG  +     + M   +   +     L    +  SD G 
Sbjct: 22 FCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEKGLH----SLIFEVVRASDAGA 76

Query: 76 YKCNAKNTLG 85
          Y C AKN  G
Sbjct: 77 YACVAKNRAG 86

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 5e-13
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 2   IVIPSQL---IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK 58
           I +P  L      ++   L L    +  P+P   WT     L  + SR H+ T  F +  
Sbjct: 24  IRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL--DTSRVHVRTSDFDT-- 79

Query: 59  FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
                ++   ++SD G Y+ + +         I++
Sbjct: 80  ---VFFVRQAARSDSGEYELSVQIENMKDTATIRI 111

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 64.2 bits (156), Expect = 6e-13
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I    Q         + L C     P P   W   +G  I    RY +      +     
Sbjct: 432 IRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYVTVNGDVVS 490

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L I S+  +D G YKC AK+ +G +E   K+
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 13/87 (14%)

Query: 5   PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
           P+  I    +    ++C     P P   W   +G+ + +           S      +L 
Sbjct: 45  PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ---ISSDG----KLV 97

Query: 65  IGSLSKSDF------GTYKCNAKNTLG 85
                  D+        Y C A+N  G
Sbjct: 98  FPPFRAEDYRQEVHAQVYACLARNQFG 124

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            LTL C V     P+   WT  +G  I E                   L I ++  S  G
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTL-DGQAISEDLGITTSRVGRRGSV----LTIEAVEASHAG 690

Query: 75  TYKCNAKNTLGGSE 88
            + C+A+N  G  +
Sbjct: 691 NFTCHARNLAGHQQ 704

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFG 74
            L + C V  YP     W   +   +    +  ++            L I ++ + SD  
Sbjct: 543 TLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNG--------TLIIENVERNSDQA 593

Query: 75  TYKCNAKNTLGGSE 88
           TY C AKN  G S 
Sbjct: 594 TYTCVAKNQEGYSA 607

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           + +    +     ++ + L C  + YP P+  W            +  +  ++       
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTR--KQAVVLNDRVKQVSG- 306

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L I      D G Y C   N++GG      +
Sbjct: 307 -TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM---RLYIGSLSKSD 72
              ++C  + +PKP   W    G    E            S    +    L++ ++ K++
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLK------KSDNIRVEEGTLHVDNIQKTN 784

Query: 73  FGTYKCNAKNTLG 85
            G Y C A N +G
Sbjct: 785 EGYYLCEAINGIG 797

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 16/70 (22%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           P    C     P     W   +G  I                     L I S+ K D G 
Sbjct: 360 PAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV---------------LRIESVKKEDKGM 403

Query: 76  YKCNAKNTLG 85
           Y+C  +N   
Sbjct: 404 YQCFVRNDRE 413

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 16  PLTLDCHVESY---PKPITFWTHENGSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSL 68
              + C + S+      +  W  +             +Y +             L+I  +
Sbjct: 155 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--------ELHIREV 206

Query: 69  SKSD-FGTYKCNAKNTLGGSE 88
              D + +Y+C  K+ L G  
Sbjct: 207 GPEDGYKSYQCRTKHRLTGET 227

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 60.0 bits (146), Expect = 8e-13
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
                     P+P   WT  +G  I +G +Y +  +K         L I     SD G 
Sbjct: 23 VAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDKGGF-----FLEIHKTDTSDSGL 76

Query: 76 YKCNAKNTLG 85
          Y C  KN+ G
Sbjct: 77 YTCTVKNSAG 86

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 60.0 bits (146), Expect = 9e-13
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
                +V+S P     W H NG  + E S+ H              L I      D GT
Sbjct: 25 NTRFILNVQSKPTAEVKWYH-NGVELQESSKIHYTNTSGVL-----TLEILDCHTDDSGT 78

Query: 76 YKCNAKNTLG 85
          Y+    N  G
Sbjct: 79 YRAVCTNYKG 88

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 59.6 bits (145), Expect = 9e-13
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + +   V+  PKP+  W   N   +    R      +        RL I +  + D G 
Sbjct: 22 DVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEGGLC----RLRILAAERGDAGF 76

Query: 76 YKCNAKNTLG 85
          Y C A N  G
Sbjct: 77 YTCKAVNEYG 86

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
                +    A +     L C  +   P     W   +G ++    +        S    
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVLN 167

Query: 60  Y--MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
                L    LS SD G Y C A+N  G       V
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           +      +      P+ L C    +  P   W  + G         +  T  +     ++
Sbjct: 7   VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66

Query: 62  --RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
              +   S+++ D GTY C      G S G +KV 
Sbjct: 67  PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
               C  +  P P   W    G ++   +R+ + T K+ S        I S+  SD G 
Sbjct: 31 SARFSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTTKYKS-----TFEISSVQASDEGN 84

Query: 76 YKCNAKNTLG 85
          Y    +N+ G
Sbjct: 85 YSVVVENSEG 94

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
               DC VE YP P   W   + + + E   + +  ++  +      L I  +   D   
Sbjct: 58  AARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDYDEEGNC----SLTISEVCGDDDAK 112

Query: 76  YKCNAKNTLG 85
           Y C A N+LG
Sbjct: 113 YTCKAVNSLG 122

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.8 bits (143), Expect = 2e-12
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
                 V   P P   W   NG  I    R + +  + +       L I  ++  D  +
Sbjct: 22 DAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVC----ELVIRDVTGEDSAS 76

Query: 76 YKCNAKNTLG 85
              A N  G
Sbjct: 77 IMVKAINIAG 86

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            +T  C     P+P   W   NG LI E  +Y +             L + ++  SD G 
Sbjct: 115 EMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTE-------LTVRNIINSDGGP 166

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A N  G  E    +
Sbjct: 167 YVCRATNKAGEDEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
             + C V S P P   W + N  +      R+ M             L I +++KSD G
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--------NLQILNINKSDEG 70

Query: 75 TYKCNAKNTLGGS 87
           Y+C  +    G 
Sbjct: 71 IYRCEGRVEARGE 83

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I  P   +         L C     PKP   W     S + E SR  +            
Sbjct: 103 ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSRIAVLESG-------- 153

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I ++ K D G Y+C AKN+LG
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLG 177

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I  P + + A +    T  C VESYP+P   WT     +    +RY +            
Sbjct: 10 ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL------ 63

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
           L I S+  SD G Y C A N +GG+
Sbjct: 64 -LTILSVEDSDDGIYCCTANNGVGGA 88

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + L   V   P P+  +   +G+ I     + +     S       L I      D GT
Sbjct: 120 QVRLQVRVTGIPTPVVKFYR-DGAEIQSSLDFQI-----SQEGDLYSLLIAEAYPEDSGT 173

Query: 76  YKCNAKNTLG 85
           Y  NA N++G
Sbjct: 174 YSVNATNSVG 183

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            T + H+  +P P   W   +G +I   +   +   + S      +L I +++K++ G 
Sbjct: 22 TATFEAHISGFPVPEVSWFR-DGQVISTSTLPGV---QISFSDGRAKLTIPAVTKANSGR 77

Query: 76 YKCNAKNTLG 85
          Y   A N  G
Sbjct: 78 YSLKATNGSG 87

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             +DC V   P P   W   +G  +   S + M   +   +     L I  ++  D G 
Sbjct: 26 LCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKMLVRENGVH----SLIIEPVTSRDAGI 80

Query: 76 YKCNAKNTLG 85
          Y C A N  G
Sbjct: 81 YTCIATNRAG 90

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 61.5 bits (149), Expect = 3e-12
 Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 3/93 (3%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            + +    +         + C   S       +   N + +    +        + Y+  
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF---HNNRYQKV 244

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           + L +  +     G Y C A N  G     +  
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 9/88 (10%), Positives = 18/88 (20%), Gaps = 9/88 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             + +Q +         L C +     +         G  +   + Y             
Sbjct: 92  WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH------- 144

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
               I          Y+C+A        
Sbjct: 145 -GFTIHRAKFIQSQDYQCSALMGGRKVM 171

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 15/79 (18%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C        +  W             + ++++  SS      L   + +  + GT
Sbjct: 21 TVTLRCVGNG---SVE-WDGPPSP------HWTLYSDGSSSI-----LSTNNATFQNTGT 65

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y+C       G    I +Y
Sbjct: 66 YRCTEPGDPLGGSAAIHLY 84

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 60.7 bits (147), Expect = 4e-12
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            L L C+V   P P   W   N   + +    ++  E   +        I  +S +D G 
Sbjct: 134 ALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTA----YFTINGVSTADSGK 188

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y    KN  G       V
Sbjct: 189 YGLVVKNKYGSETSDFTV 206

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 7/116 (6%)

Query: 17  LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L   V  Y       W+H NGS I    R                L I   + +D G 
Sbjct: 20  IQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKGK 73

Query: 76  YKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIA 131
           Y     +   G +  + +    Y  +  ++   ++     +      G        
Sbjct: 74  YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 129

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 61.4 bits (149), Expect = 5e-12
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +    +  +    P+ + C V+S P     W   +  ++   +  ++   K  S    M
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKNTTNL---KTYSTGRKM 158

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L I   S +DFG Y C A N +G       +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 16 PLTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           +TL C  E  P P   W    +G    EG +      +         L+I  +  SD G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76

Query: 75 TYKCNAKNTLGGSEGVIKV 93
           Y C A + +GG +  + +
Sbjct: 77 RYDCEAASRIGGHQKSMYL 95

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 57.7 bits (140), Expect = 5e-12
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           +   C +E+Y +     W       +    +Y +  E   +      LY+  ++K D G
Sbjct: 18 HVKYVCKIENYDQSTQVTWYF-GVRQLENSEKYEITYEDGVA-----ILYVKDITKLDDG 71

Query: 75 TYKCNAKNTLG 85
          TY+C   N  G
Sbjct: 72 TYRCKVVNDYG 82

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
          P+T  C V   PKP  +W  +   +  +   Y +  +   +      L+  + +  D G 
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC----SLHTTASTLDDDGN 80

Query: 76 YKCNAKNTLG 85
          Y   A N  G
Sbjct: 81 YTIMAANPQG 90

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + + C     P P   W   +   + E S   +     +       L I  + K D G 
Sbjct: 27 SIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRN-------LTIRRVRKEDEGL 78

Query: 76 YKCNAKNTLG 85
          Y C A + LG
Sbjct: 79 YTCQACSVLG 88

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             L C +   P P   W    G  + +  +Y M ++  +       L + +  + D G 
Sbjct: 24 AAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRTH-----TLTVMTEEQEDEGV 77

Query: 76 YKCNAKNTLG 85
          Y C A N +G
Sbjct: 78 YTCIATNEVG 87

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFG 74
            L L       P P   W H    L+       +      + + Y  L + ++  K+  G
Sbjct: 120 TLRLHVMYIGRPVPAMTWFH-GQKLLQNSENITI-----ENTEHYTHLVMKNVQRKTHAG 173

Query: 75  TYKCNAKNTLGGSEGVIKVY 94
            YK    N  G  + ++ V 
Sbjct: 174 KYKVQLSNVFGTVDAILDVE 193

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            V  +  +   ++A +TL   V++       W     S ++    + +      S     
Sbjct: 51  TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFDLQNRGVVS----- 104

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            + I  ++++  G Y    ++       +  V 
Sbjct: 105 -MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           PL + C            W  EN +L               +    +  ++ S++++D G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303

Query: 75  TYKCNAKNTLGGSEGVIKVYNIGYF 99
            Y C++         ++ +   G+ 
Sbjct: 304 YYTCSSSKHP-SQSALVTIVEKGFI 327

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 10/93 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
               S+                ++YP+    WT    S             +        
Sbjct: 329 ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGLDNGY 378

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            +      K   G Y  +A+N       +  + 
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSL---SK 70
                C  + YP P   W   +       E     +W  K +   F   +   +L     
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483

Query: 71  SDFGTYKCNAKNTLGGSEGVIKV 93
                 KC A N+LG S   I +
Sbjct: 484 IKGFLVKCCAYNSLGTSCETILL 506

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
            L C  ES P+PI  W   +                       ++     L +      +
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESP----------AVVKKEEKVLHELFGTDIR 207

Query: 78  CNAKNTLG 85
           C A+N LG
Sbjct: 208 CCARNELG 215

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
             T+ C ++     +   W     S      +Y+ W     +Y+    L I S   +D G
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKR-ENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286

Query: 75  TYKCNAKNTLGGSE--GVIKVYNIGYFGSDTQYVTDEE 110
            + C A NT G +     ++V + G+        T   
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 58.5 bits (141), Expect = 6e-11
 Identities = 15/79 (18%), Positives = 30/79 (37%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + L    E++PKP             +    +  +E  S+ ++   L++  L  ++ GT
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389

Query: 76  YKCNAKNTLGGSEGVIKVY 94
           Y     N+   +     VY
Sbjct: 390 YTFLVSNSDVNAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSR------YHMWTEKFSSYKFYMRLYIGSLS 69
              L C    +P+P   W    G+     +         + +      K  ++  I S +
Sbjct: 423 NGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSA 482

Query: 70  KSDFGTYKCNAKNTLGGSEGVIKVY 94
               GT +C A N +G +       
Sbjct: 483 FKHNGTVECKAYNDVGKTSAYFNFA 507

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 19/93 (20%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + L C    + K    WT E     +E  +                        ++ G 
Sbjct: 53  EIRLLCTDPGFVK----WTFEILDETNENKQN--------------EWITEKAEATNTGK 94

Query: 76  YKCNAKNTLGGSEGV-IKVYNIGYFGSDTQYVT 107
           Y C  K+ L  S  V ++     +    + Y  
Sbjct: 95  YTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 6/83 (7%), Positives = 22/83 (26%), Gaps = 9/83 (10%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            + +  + +  +      + C +              G  + +  R+    +        
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA------- 168

Query: 61  MRLYIGSLSKS-DFGTYKCNAKN 82
             + I S+ ++       C+   
Sbjct: 169 -GIMIKSVKRAYHRLCLHCSVDQ 190

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGS-RYHMWTEKFSSYK 58
           ++ +P      +     T+ C ++     +   W   N    H    +++ W     +Y+
Sbjct: 190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249

Query: 59  FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
               L I S    D G + C A NT G +     +
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 4/82 (4%), Positives = 17/82 (20%), Gaps = 7/82 (8%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            + +    +  +  +   + C +             +G  +     +    +        
Sbjct: 93  KLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI----- 147

Query: 61  MRLYIGSLSKSDFGTYKCNAKN 82
                           +C A+ 
Sbjct: 148 --TIKNVKRAYHRLCVRCAAQR 167

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            TL C V  +PKPI  W  +   +I +G +Y +   K   ++    L I S++  D   
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ----LIIASVTDDDATV 76

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y+  A N  G   G   + 
Sbjct: 77 YQVRATNQGGSVSGTASLE 95

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFG 74
            +++       P P+  W      LI     Y +  T  F+S      ++   + + D G
Sbjct: 121 VVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTRSFTS-----LVFPNGVERKDAG 174

Query: 75  TYKCNAKNTLGGSEGVIKV 93
            Y   AKN  G  +  +++
Sbjct: 175 FYVVCAKNRFGIDQKTVEL 193

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          ++     +      P+ L+C VE   +P   W   +G+++    + ++   +     F  
Sbjct: 5  LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSEQHWIGF-- 61

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
           L + S+ +SD G Y C  ++     
Sbjct: 62 -LSLKSVERSDAGRYWCQVEDGGETE 86

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 16/88 (18%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +  + +     AP  L C     P+P+T  W      +                    
Sbjct: 101 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------- 146

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
               +     +    + C A N  G + 
Sbjct: 147 -PSVLNVTGVTQSTMFSCEAHNLKGLAS 173

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 5/98 (5%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
                S      +     L C      P     W   +G  +             SS+  
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTI 164

Query: 60  YMR---LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
             +   L    ++  D G Y C A+N  G +      +
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 2/95 (2%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          +      +       + L C    +  P   W    GS           T  ++    + 
Sbjct: 4  VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 62 R--LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
             +   S+++ D G Y C      G + G + ++
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDFGT 75
           +   V+  P P   W   NGS+++E S       + ++ +      L +   +  + G 
Sbjct: 19 CIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y   A N  G +   I   
Sbjct: 78 YTLLAANPFGQASASIMAA 96

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 58.9 bits (142), Expect = 4e-11
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            V  +  +   ++A +TL   V++       W  ++ SL +    + +      S     
Sbjct: 51  TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL-NCQPHFDLQNRGVVS----- 104

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            + I  ++++  G Y    ++       +  V 
Sbjct: 105 -MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 10/80 (12%)

Query: 15  APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
                    ++YP+    WT    S   E          +S       +      K   G
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD---NGYS-------ISKFCNHKHQPG 391

Query: 75  TYKCNAKNTLGGSEGVIKVY 94
            Y  +A+N       +  + 
Sbjct: 392 EYIFHAENDDAQFTKMFTLN 411

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 16  PLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM-RLYIGSLSKSDF 73
           PL + C            W       + EG+ + M T   +     +   ++ S++++D 
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302

Query: 74  GTYKCNAKNTLGGSEGVIKVYNIGYF 99
           G Y C++      S  ++ +   G+ 
Sbjct: 303 GYYTCSSSKHPSQS-ALVTIVEKGFI 327

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
            L C  ES P+PI  W   +              +K           +  L  +D    +
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-------KVLHELFGTD---IR 207

Query: 78  CNAKNTLG 85
           C A+N LG
Sbjct: 208 CCARNELG 215

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           I+  +Q   A       + C + S P P    W+ +   L    S  +      +     
Sbjct: 16  IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75

Query: 61  MRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKVY 94
             L I ++ ++DF T Y C A N+ G    +I++ 
Sbjct: 76  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 4  IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
          +  +L+    A  +   C     P P   W   NG       R      +   +     L
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQW----SL 74

Query: 64 YIGSLSKSDFGTYKCNAKNTLG 85
           + S+  SD G Y C  +N  G
Sbjct: 75 VMESVVPSDRGNYTCVVENKFG 96

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 16  PLTLDCHVESYPKPITFWTHE---NGSLIHEGSRYHMWTEKFSSYKF---YMRLYIGSLS 69
            +   C V S  +P   W      NGS +      ++   K    +     +RL + ++S
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190

Query: 70  KSDFGTYKCNAKNTLGGSE 88
           + D G Y C A N +G +E
Sbjct: 191 ERDGGEYLCRATNFIGVAE 209

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           + V   + + A     + L+C     P P   W   +G  I   +R H            
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG-------- 258

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L I +  + D G+Y+C A+N+ G +    ++
Sbjct: 259 -ILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 16  PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + L C       +    W         +  R+               LYI  + KSD G
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--------NLYIAKVEKSDVG 170

Query: 75  TYKCNAKNTLGGSE 88
            Y C   NT+   +
Sbjct: 171 NYTCVVTNTVTNHK 184

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            V     I   +   +  +C     PKP   W   NG  +    R  +            
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTRDRIQIEQG--------- 347

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I  ++ SD G Y+C A+N  G
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHG 371

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFG 74
           + L C V+  PKP   W   NG+ +  G  +       S       L I + +K  D G
Sbjct: 25 KVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGS-------LLINNPNKTQDAG 76

Query: 75 TYKCNAKNTLG 85
          TY+C A N+ G
Sbjct: 77 TYQCIATNSFG 87

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 7  QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
          +L     A  +   C     P P   W   NG    +  R   +  +   +     L + 
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHW----SLIME 70

Query: 67 SLSKSDFGTYKCNAKNTLG 85
          S+  SD G Y C  +N  G
Sbjct: 71 SVVPSDKGNYTCVVENEYG 89

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.2 bits (140), Expect = 8e-11
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + + C     P P   W   +   + E S   +     +       L I  + K D G 
Sbjct: 683 SIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRN-------LTIRRVRKEDEGL 734

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A + LG ++     
Sbjct: 735 YTCQACSVLGCAKVEAFF 752

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG----SRYHMWTEKFSSY 57
           ++ PS  I   +   L L+C   +       +  E  S  H+     +R           
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286

Query: 58  KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           KF   L I  +++SD G Y C A + L   +    V
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 322

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 11/73 (15%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + +      YP P   W   NG  +                     L I  +S+ D G 
Sbjct: 347 RVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHV----------LTIMEVSERDTGN 395

Query: 76  YKCNAKNTLGGSE 88
           Y     N +   +
Sbjct: 396 YTVILTNPISKEK 408

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 14/93 (15%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIH--------------EGSRYHMWTEKFSSYKFYM 61
            ++L C  +        W       +               +       T   +S    +
Sbjct: 566 SVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            + + + S  D G Y C A++        +   
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)

Query: 16  PLTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + + C        ++          + +G+R    ++K           I S   S  G
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK--------GFTIPSYMISYAG 196

Query: 75  TYKCNAKNTLGGSE 88
              C AK      +
Sbjct: 197 MVFCEAKINDESYQ 210

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           + I   ++  +    L + C  +        W   N     E         + S   F  
Sbjct: 34  LSIQKDILTIKANTTLQITCRGQRDLD----WLWPNNQSGSEQRVEV---TECSDGLFCK 86

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L I  +  +D G YKC  + T   S   + V
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 25/107 (23%), Gaps = 28/107 (26%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTE---------------------- 52
             TL C V + P P    W  +            +                         
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499

Query: 53  -----KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
                     K      +   + +    YKC A N +G  E VI  +
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 57.9 bits (140), Expect = 9e-11
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +     + A  +  +  +C V   P P   W   NG ++     + +            
Sbjct: 315 FLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQIVGGS-------- 365

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I  + KSD G Y+C A+N  G
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAG 389

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +     + A       L+C V  YP P   W      +     +Y +     S+    
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SN---- 276

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLG 85
             L I +++  D GTY C       
Sbjct: 277 --LLISNVTDDDSGTYTCVVTYKNE 299

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSL--IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
            + L C V   P P   W      L  I   SR  +      S      L I  L   D 
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV----LPSGA----LQISRLQPGDS 189

Query: 74  GTYKCNAKNTLG 85
           G Y+C+A+N   
Sbjct: 190 GVYRCSARNPAS 201

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 16  PLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + L+C  E     P+  W   +G ++  G           S      +      K D G
Sbjct: 38  NVLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQQLPNGSLLI-QNILHSRHHKPDEG 95

Query: 75  TYKCNAKNTLGGS----EGVIKVYNIGYFGSDTQYVT 107
            Y+C A     GS       + V     F S T+ +T
Sbjct: 96  LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT 132

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 4   IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
           +  +L     A  +   C     P P   W   NG    +  R   +  +   +     L
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHW----SL 78

Query: 64  YIGSLSKSDFGTYKCNAKNTLG 85
            + S+  SD G Y C  +N  G
Sbjct: 79  IMESVVPSDKGNYTCVVENEYG 100

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR-----LYIGSLSKSD 72
              C V S  +P   W         +     +   K   +          L + +++++D
Sbjct: 137 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 196

Query: 73  FGTYKCNAKNTLG 85
            G Y C   N +G
Sbjct: 197 AGEYICKVSNYIG 209

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            +             + L C  ++ P    + WT  NGSL            K    +  
Sbjct: 235 TIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP-----------KGVEAQNR 283

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
              + G ++ S  GTY C A N +G   G ++V 
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 8/93 (8%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI---HEGSRYHMWTEKFSSY 57
            + + S+       + LT+ C V ++P P   W    G                      
Sbjct: 106 TLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK----EKDG 161

Query: 58  KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV 90
              + +   SL K       C  KN    + GV
Sbjct: 162 SLSVAV-DLSLPKPWHLPVTCVGKNDKEEAHGV 193

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + + C V +YP     W   +G L+   +  ++   K  +      L +   S++DFG 
Sbjct: 35  QVNITCEVFAYPSATISWFR-DGQLLPSSNYSNI---KIYNTPSASYLEVTPDSENDFGN 90

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A N +G       +
Sbjct: 91  YNCTAVNRIGQESLEFIL 108

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.2 bits (131), Expect = 1e-10
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L C +     P+  W   +   I +  +Y +  E   +      L I   S  D G 
Sbjct: 25 DVELRCELSRAGTPVH-WLK-DRKAIRKSQKYDVVCEGTMA-----MLVIRGASLKDAGE 77

Query: 76 YKCNAKNTLG 85
          Y C  + +  
Sbjct: 78 YTCEVEASKS 87

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
              + C V S   P   W H+   +I +     +             L I  + K+D GT
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-------LQIRGIKKTDEGT 169

Query: 76  YKCNAKNTLGGSEGVIKVY 94
           Y+C  +    G      + 
Sbjct: 170 YRCEGRILARGEINFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 6/86 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGS-RYHMWTEKFSSYKF 59
          + I        +       C V    K     W   NG  +     R  +      S   
Sbjct: 5  VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST- 63

Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLG 85
             L I + +  D G YKC      G
Sbjct: 64 ---LTIYNANIDDAGIYKCVVTAEDG 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           L L C +    + I  W   +G  + E +R  +  E          + +     +D G 
Sbjct: 20 LLQLRCRLRDDVQSIN-WLR-DGVQLAESNRTRITGE---------EVEVQDSVPADSGL 68

Query: 76 YKCNAKNTLG 85
          Y C   +  G
Sbjct: 69 YACVTSSPSG 78

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             L C V   P P   W   NG  I   +R                L+I      D GT
Sbjct: 28 DFVLQCSVRGTPVPRITWLL-NGQPIQY-ARSTCEAGVAE-------LHIQDALPEDHGT 78

Query: 76 YKCNAKNTLG 85
          Y C A+N LG
Sbjct: 79 YTCLAENALG 88

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + L C V +  K     W   +   I    ++       +       L I   SK D G
Sbjct: 238 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 289

Query: 75  TYKCNAKNTLG 85
            Y+   K+  G
Sbjct: 290 IYEVILKDDRG 300

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            L  +C     PK    W+  +     +  R  + ++   +     ++    L   D G
Sbjct: 19 ISLNFECDK-MTPKSEFSWSK-DYVSTEDSPRLEVESKGNKT-----KMTFKDLGMDDLG 71

Query: 75 TYKCNAKNTLGGSE 88
           Y C+  +T G + 
Sbjct: 72 IYSCDVTDTDGIAS 85

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 18  TLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
                 E         +   N   I EG +Y M           + +++  L   D GTY
Sbjct: 126 RFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 77  KCNAKNTLG 85
               ++   
Sbjct: 182 TFQLQDGKA 190

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 5   PSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
           P++++  R   P  L+C +E   + + + W   +G   +         +   S      L
Sbjct: 13  PAEVL-FRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKDEGS------L 64

Query: 64  YIGSLSKSDFGTYKCNAKNTLG---GSEGVIKVYNIGYFGSDTQYVTDEE 110
                  SD G Y+C A+   G         +   +    + T   T  E
Sbjct: 65  VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE 114

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSL-IHEGSRYHMWTEKFSSYKF 59
           +    S+ + A+      + C   S P     +      +  +   R             
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--- 270

Query: 60  YMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
             RL   +    D G Y C   N +G  +
Sbjct: 271 --RLLFKTTLPEDEGVYTCEVDNGVGKPQ 297

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
              P ++I  +    +T+ C V   P P   W+H N   +  G R  +            
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGG-RATVTDS--------- 360

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I  +   D G Y C A N  G
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHG 384

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 16  PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK---S 71
           P  LDC +  +YPKP+  W     S     +    +  + ++      LY   ++K   S
Sbjct: 117 PFQLDCVLPNAYPKPLITWKK-RLSGADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVS 174

Query: 72  DFGTYKCNAKNTLGGSEGVIKVYNI 96
           D   Y C AKN     E V+  Y I
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEI 199

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 11/108 (10%)

Query: 16  PLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + L C      P   T W   +G+ +    R  +  ++         L + + S  D G
Sbjct: 25  AVELSCPPPGGGPMGPTVWVK-DGTGLVPSERVLVGPQR---------LQVLNASHEDSG 74

Query: 75  TYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKW 122
            Y C  + T                  D +   DE            W
Sbjct: 75  AYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYW 122

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.8 bits (134), Expect = 4e-10
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 7   QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
           +L+    A  +   C     P P   W   NG       R      +   +     L + 
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQW----SLVME 185

Query: 67  SLSKSDFGTYKCNAKNTLG 85
           S+  SD G Y C  +N  G
Sbjct: 186 SVVPSDRGNYTCVVENKFG 204

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 16  PLTLDCHVESYPKPITFWTHE---NGSLIHEGSRYHMWTEKFSSYKFYMR----LYIGSL 68
            +   C V S  +P   W      NGS +      ++   K +      +    L + ++
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298

Query: 69  SKSDFGTYKCNAKNTLG 85
           +  D G Y C A N++G
Sbjct: 299 TFEDAGEYTCLAGNSIG 315

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 17/106 (16%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             I       R    L L CH  S P     W   NG+                      
Sbjct: 206 PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQE--------------- 249

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
            L+I +++ ++ G+Y C A N+  G           Y      ++T
Sbjct: 250 -LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT 294

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +  +          +   C  E+      +W   NG  +    R  +     +     
Sbjct: 469 PSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQLSNGNRT----- 521

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
             L + +++++D   Y C  +N++  + 
Sbjct: 522 --LTLFNVTRNDARAYVCGIQNSVSANR 547

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 17/87 (19%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +I          A L L CH  S P P   W   NG                       
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQQHTQV--------------- 605

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
            L+I  ++ ++ GTY C   N   G  
Sbjct: 606 -LFIAKITPNNNGTYACFVSNLATGRN 631

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 17/87 (19%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             I       R    L+L CH  S P     W   +G++                     
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQE--------------- 427

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
            L+I ++++ + G Y C A N+  G  
Sbjct: 428 -LFISNITEKNSGLYTCQANNSASGHS 453

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +  +          +   C  E+      +W   N   +    R  +     +      
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPETQDATYLWWV--NNQSLPVSPRLQLSNGNRT------ 165

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGS 87
            L + +++++D  +YKC  +N +   
Sbjct: 166 -LTLFNVTRNDTASYKCETQNPVSAR 190

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +  +          + L C  E       +W   N   +    R  +  +  +      
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLSNDNRT------ 343

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
            L + S++++D G Y+C  +N L    
Sbjct: 344 -LTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 16  PLTLDCHVESYPKPITFWTH-ENGSLIHEGSRYHMWTEKFSSYKFYMR---------LYI 65
            + L  H          W   E      +   Y + T++ +    Y           L I
Sbjct: 16  EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75

Query: 66  GSLSKSDFGTYKCNAKNTLGGSEGV 90
            ++ ++D G Y  +   +   +E  
Sbjct: 76  QNIIQNDTGFYTLHVIKSDLVNEEA 100

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I          +   + + C     P P  +W   N + +   +  +   +         
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLKDG-------- 163

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I +  + D G Y+C A+N++G
Sbjct: 164 FLQIENSREEDQGKYECVAENSMG 187

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYI-GSLSKSDFG 74
            +  C     P P   W      +    SRY +  +          L I    +  D  
Sbjct: 23 VASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDA 78

Query: 75 TYKCNAKNTLG 85
           Y+C A+N +G
Sbjct: 79 PYECVAENGVG 89

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.4 bits (126), Expect = 6e-10
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+         +     L C     P P+  W  E  +      R  +  E+ +      
Sbjct: 11 ILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI-QEQGT------ 63

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
           L I +L  SD GTY C A ++ G
Sbjct: 64 -LQIKNLRISDTGTYTCVATSSSG 86

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 54.2 bits (130), Expect = 7e-10
 Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 16/83 (19%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            LTL         P        G  I  G                  L +  L   D GT
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 157

Query: 76  YKCNAKNTLGGSEGVIKVYNIGY 98
           + C         E  I +  + +
Sbjct: 158 WTCTVLQNQKKVEFKIDIVVLAF 180

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 11/78 (14%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM------WTEKFSSYKFYMR-----LY 64
           + L C           W + N   I       +        ++  S +         L 
Sbjct: 12 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 71

Query: 65 IGSLSKSDFGTYKCNAKN 82
          I +L   D  TY C  ++
Sbjct: 72 IKNLKIEDSDTYICEVED 89

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 16/85 (18%), Positives = 21/85 (24%), Gaps = 8/85 (9%)

Query: 1  MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
          +I          +     L C     P P   W  +   +  + SR              
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN--GV---- 63

Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
            L I      D G Y C A    G
Sbjct: 64 --LQIRYAKLGDTGRYTCIASTPSG 86

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 54.7 bits (131), Expect = 9e-10
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 21/98 (21%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSL----IHEGSRYHMWTEKFSS 56
            +              TL C   S P+P  + W+   G L    + +G++          
Sbjct: 220 SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ---------- 269

Query: 57  YKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
                 L I  + K    T  CN  N LG  +  + V 
Sbjct: 270 ------LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 17/104 (16%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPIT-----FWTHEN------------GSLIHEG 44
           +V     +   L   +TL C+++     +T      W                G    E 
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 45  SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
            R      +  +      L +  L   D G Y C       GS 
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSR 106

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 54.1 bits (130), Expect = 9e-10
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I +  QL         T+ C     P P   W   +   +   +      +  S      
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSESIG-- 167

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I    +SD G Y+C A N+ G
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAG 191

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             P            +  C     P+P   W    G  +       +  +  S      
Sbjct: 10 TRTPVDQT-GVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVIEFDDGSGS---- 63

Query: 62 RLYIGSL-SKSDFGTYKCNAKNTLG 85
           L I  L +  D   Y+C A N +G
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVG 88

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I +  QL         T+ C     P P   W   +   +   +      +  S      
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSG----- 164

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
            L I S  ++D G Y+C A N+ G   
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRY 191

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 12/84 (14%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             I            + + C     P P   W       +       +            
Sbjct: 208 FSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPV-----------G 255

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
           R  +      D   Y C A ++LG
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLG 279

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFG 74
            +  C     PKP   W  +   +  +      + E   +      L I  L +  D  
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV-----LRIQPLRTPRDEN 77

Query: 75 TYKCNAKNTLG 85
           Y+C A+N++G
Sbjct: 78 VYECVAQNSVG 88

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            L L+C     P P   W  + G L  + +++  + +          L I ++S+ D G 
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK---------ALRITNVSEEDSGE 289

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A N +G     I V
Sbjct: 290 YFCLASNKMGSIRHTISV 307

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
              L C     PKP   W   NG  +              +      +       S    
Sbjct: 329 DGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVAGDT------IIFRDTQISSRAV 381

Query: 76  YKCNAKNTLG 85
           Y+CN  N  G
Sbjct: 382 YQCNTSNEHG 391

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 16  PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD-F 73
           PLTL C+     P P+ FW   +   I +  R                LY  ++   D  
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--------DLYFSNVMLQDMQ 184

Query: 74  GTYKCNAKNTLGGS 87
             Y CNA+     +
Sbjct: 185 TDYSCNARFHFTHT 198

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            + ++C  +  P P   WT  N    +      +   + S     +    G   +   G 
Sbjct: 34  NILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRRSG-TLVIDFRSGGRPEEYEGE 91

Query: 76  YKCNAKNTLG 85
           Y+C A+N  G
Sbjct: 92  YQCFARNKFG 101

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +       A + + L   C     P+P   W   +G  +   +R  +            
Sbjct: 297 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEVSGG--------- 346

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L    L   D G Y+C A+N  G
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHG 370

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 11/76 (14%)

Query: 16  PLTLDCHV-ESYPKPITFWTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
            +   C     YP     W           +G R+   T           LYI     SD
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--------NLYIAKTEASD 169

Query: 73  FGTYKCNAKNTLGGSE 88
            G Y C A + +    
Sbjct: 170 LGNYSCFATSHIDFIT 185

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           +         A     +TL+C     P P   W   +GS     S++             
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSE--------- 256

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L+I ++   D GTY+C A+N  G      ++
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C   + P     W   NG+ +  G        +  +    +      +   D G+
Sbjct: 24 KVTLTCRARANPPATYRWKM-NGTELKMGPDSRY---RLVAGDLVI---SNPVKAKDAGS 76

Query: 76 YKCNAKNTLG 85
          Y+C A N  G
Sbjct: 77 YQCVATNARG 86

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 7/81 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
               C V         W   NG  +    R  +            +L I  +   D G 
Sbjct: 25 QAVFKCEVSDEKVTGK-WYK-NGVEVRPSKRITISHVGRFH-----KLVIDDVRPEDEGD 77

Query: 76 YKCNAKNTLGGSEGVIKVYNI 96
          Y              +    I
Sbjct: 78 YTFVPDGYALSLSAKLNFLEI 98

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
          T  C +         W   + + +H      +  +    +     L +  L+  D GT  
Sbjct: 32 TFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGGYH----VLTLRQLALKDSGTIY 86

Query: 78 CNAKNT 83
            A + 
Sbjct: 87 FEAGDQ 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           L L C +    + I  W   +G  + E +R  +  E          + +     +D G 
Sbjct: 26 LLQLRCRLRDDVQSIN-WLR-DGVQLVESNRTRITGE---------EVEVRDSIPADSGL 74

Query: 76 YKCNAKNTLGGSEGVIKV 93
          Y C   +  G       V
Sbjct: 75 YACVTSSPSGSDTTYFSV 92

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
               +        +   N   I EG +Y M           + +++  L   D GTY  
Sbjct: 23 WMQAEKLSGNAKVNYIF-NEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTYTF 78

Query: 79 NAKNTLGGSE 88
            ++    + 
Sbjct: 79 QLQDGKATNH 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + L C V +  K     W   +   I    ++       +       L I   SK D G
Sbjct: 133 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 184

Query: 75  TYKCNAKNTLGGSEGVIKV 93
            Y+   K+  G  +  +K+
Sbjct: 185 IYEVILKDDRGKDKSRLKL 203

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDFG 74
             +   V+  P P   W   NGS+++E S       + ++ +      L +   +  + G
Sbjct: 264 WCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322

Query: 75  TYKCNAKNTLGGSEGVIKV 93
            Y   A N  G +   I  
Sbjct: 323 NYTLLAANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 7/94 (7%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            + +        +   + L C VE        W            +              
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL----- 214

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
                   S  +     C A+N +G +E  ++V 
Sbjct: 215 --TLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLIHEG--SRYHMWTEKFSSY 57
           ++ PS  I   +   L L+C   +     I F W + +    H+   +R           
Sbjct: 108 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 167

Query: 58  KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
           KF   L I  +++SD G Y C A + L   +    V 
Sbjct: 168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 13/87 (14%)

Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
          P+  I    +    ++C     P P   W   +G+ + +       +           L 
Sbjct: 10 PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK-------LV 62

Query: 65 IGSLSKSDF------GTYKCNAKNTLG 85
                 D+        Y C A+N  G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFG 89

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
              +  + +   +A  ++L C  + +P P   W            +  +  ++    +  
Sbjct: 214 TPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR--KQAVVLNDRVK--QVS 269

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L I      D G Y C   N++GG      +
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 16/84 (19%), Positives = 20/84 (23%), Gaps = 16/84 (19%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             I           P    C     P     W   +G  I                    
Sbjct: 310 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES--------------- 353

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLG 85
            L I S+ K D G Y+C  +N   
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRE 377

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 16  PLTLDCHVESY---PKPITFWTHENGSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSL 68
              + C + S+      +  W  +             +Y +      S +    L+I  +
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV----LPSGE----LHIREV 171

Query: 69  SKSD-FGTYKCNAKNTLGGSE 88
              D + +Y+C  K+ L G  
Sbjct: 172 GPEDGYKSYQCRTKHRLTGET 192

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            +TL C V         WT+              +      Y     L+I S    D GT
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-YHIRSILHIPSAELEDSGT 256

Query: 76  YKCNAKNTLG 85
           Y CN   ++ 
Sbjct: 257 YTCNVTESVN 266

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             L C   +   P+  W   +     E ++            F   L + +L+  D G 
Sbjct: 17 TFVLTCSGSA---PVV-WERMSQEPPQEMAKAQ-------DGTFSSVLTLTNLTGLDTGE 65

Query: 76 YKCNAKNTLG 85
          Y C   ++ G
Sbjct: 66 YFCTHNDSRG 75

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            TL C + S   P+  W +   +++  G +Y +  E          L + +L   D G 
Sbjct: 25 AATLRCVLSSVAAPVK-WCY-GNNVLRPGDKYSLRQEGAML-----ELVVRNLRPQDSGR 77

Query: 76 YKCNAKNT 83
          Y C+  + 
Sbjct: 78 YSCSFGDQ 85

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I +    +         + C   +             + +           + + YK   
Sbjct: 189 IKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS---DFQDNYYKKVR 245

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L + ++   D G Y C A N +G     +  
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 9/87 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             + +Q +         L C +     K       E G  +   + Y     +       
Sbjct: 92  WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR------- 144

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGS 87
               I      D  TY C        S
Sbjct: 145 -GFIIRKAKVLDSNTYVCKTMVNGRES 170

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 15/79 (18%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C        +  W                  E   S      L   + +  + GT
Sbjct: 21 TVTLRCVSNG---SVE-WDGPISPYWTLDP------ESPGS-----TLTTRNATFKNTGT 65

Query: 76 YKCNAKNTLGGSEGVIKVY 94
          Y+C            I +Y
Sbjct: 66 YRCTELEDPMAGSTTIHLY 84

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 15/84 (17%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I +  +         + L C    +P     W   N  + +  +                
Sbjct: 21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS--------------- 65

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
           L   ++   D G Y C   N   
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFT 89

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 15/70 (21%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            L L C     P P   W   N   +   ++                  +  +     GT
Sbjct: 135 TLVLQCVAVGSPIPHYQWFK-NELPLTHETKK--------------LYMVPYVDLEHQGT 179

Query: 76  YKCNAKNTLG 85
           Y C+  N   
Sbjct: 180 YWCHVYNDRD 189

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 20/120 (16%), Positives = 30/120 (25%), Gaps = 17/120 (14%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            LTL         P        G  I  G                  L +  L   D GT
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 156

Query: 76  YKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKW 135
           + C         E  I +  +  F   +  V  +E ++        +  E+        W
Sbjct: 157 WTCTVLQNQKKVEFKIDI-VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 7/88 (7%), Positives = 19/88 (21%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           L       S  K    +  +N  +  +        +       ++ L       +  G  
Sbjct: 213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272

Query: 77  KCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
               +   G     + +  +        
Sbjct: 273 TLALEAKTGKLHQEVNLVVMRATQLQKN 300

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 11/78 (14%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM------WTEKFSSYKFYMR-----LY 64
           + L C           W + N   I       +        ++  S +         L 
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70

Query: 65 IGSLSKSDFGTYKCNAKN 82
          I +L   D  TY C  ++
Sbjct: 71 IKNLKIEDSDTYICEVED 88

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKF 59
            +                L C  ES P    + W     S               SS + 
Sbjct: 85  RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144

Query: 60  YMRLYIGSLS-KSDFGTYKCNAKNTLGGSEGVIKV 93
              L+I +L+ ++D G Y+CN  ++ G  + +I +
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 15/74 (20%)

Query: 16 PLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
           + L C +      +T   W    G ++ E +                +      S   +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLK-GGVVLKEDA------------LPGQKTEFKVDSDDQW 61

Query: 74 GTYKCNAKNTLGGS 87
          G Y C       G+
Sbjct: 62 GEYSCVFLPEPMGT 75

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 7/65 (10%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
            +  + S P     W    G  +       +  +          L + +      G   
Sbjct: 24 HFEIEL-SEPDVHGQWKL-KGQPLAASPDCEIIEDGKKH-----ILILHNCQLGMTGEVS 76

Query: 78 CNAKN 82
            A N
Sbjct: 77 FQAAN 81

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
          P TL+C VE  P+P   W   +G  +    +     + F     +    +    + D G 
Sbjct: 26 PATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGE 83

Query: 76 YKCNAKNTLG 85
          Y C AKN +G
Sbjct: 84 YWCVAKNRVG 93

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +  +           L+C   +  P+P   W   +G  + +                 
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDG 169

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLG 85
             L I ++   D G YKC A+N +G
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVG 194

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          +V+  +         +TL C V + P P   W  +   L    S                
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-------------- 58

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
           L +  +   D GTY C A ++  G +
Sbjct: 59 -LILPEIGPQDQGTYSCVATHSSHGPQ 84

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYH-------MWTEK 53
           ++   ++ +   L + + L C+V      I +W   NGS+I E                 
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPAN 269

Query: 54  FSSYKFYMRLYIGSLSKSDF-GTYKCNAKNTLGGSEGVIKV 93
                    L I  +    +   + C AKNT G     I++
Sbjct: 270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 11  ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
             L  P       E+   P   W  +   L+ +   +    +         RL + ++++
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---------RLIVMNVAE 171

Query: 71  SDFGTYKCNAKNTLGGSEGVIK 92
              G Y C+A  T  G +  I 
Sbjct: 172 KHRGNYTCHASYTYLGKQYPIT 193

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 9/80 (11%)

Query: 16 PLTLDCHVESYPKPITF-WTHENGSL-IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
               C +       T  W  ++    +       +   K         L+       D 
Sbjct: 22 IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-------LWFVPAKVEDS 74

Query: 74 GTYKCNAKNTLGGSEGVIKV 93
          G Y C  +N+       I  
Sbjct: 75 GHYYCVVRNSSYCLRIKISA 94

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           IV+  + + A +   +TL+C     P P   W       +   +                
Sbjct: 116 IVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMPSTAEISTSGA--------- 165

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
            L I ++   D G Y+C A+N  G  +   ++Y
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 16 PLTLDCHVE-SYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
           + L C     +P  +++ W      +     +    ++   +      LYI ++  SD 
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN------LYIANVEASDK 78

Query: 74 GTYKCNAKNTLGGSE 88
          G Y C   +      
Sbjct: 79 GNYSCFVSSPSITKS 93

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 50.1 bits (119), Expect = 7e-09
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 3   VIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLIHEG--SRYHMWTEKFSSYK 58
           + PS  I   +   L L+C   +     I F W + +    H+   +R           K
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 59  FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           F   L I  +++SD G Y C A + L   +    V
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPIT----FWTHENGSLIHEGSRYHMWTEKFSSY 57
            +I    I   +  P  + C   S    +      W + +G +I      +         
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI 290

Query: 58  KFYMRLYIGSLSKSDFG-TYKCNAKNTLGGSEGVIKV 93
                LY  ++++   G TY C   N          V
Sbjct: 291 T-EATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 46.4 bits (109), Expect = 8e-07
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFY 60
            +  +  +G      + L C +          W   N  LI +G++Y    +        
Sbjct: 131 CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ-------- 182

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L I +    D G Y C         +  I V
Sbjct: 183 -NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI----HEGSRYHMWTEKFSSY 57
           I    +           + C    YP P   W  +   +     +   R+ +  ++  + 
Sbjct: 95  ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154

Query: 58  KFYMRLYIGSLS-KSDFGTYKCNAKNTLG 85
                L I +L    D G Y+CNA N++G
Sbjct: 155 -----LNIVNLQITEDPGEYECNATNSIG 178

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 14/94 (14%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKF 59
          IV   ++I      P+TL C++ S    +   +WT  NG  +    +     E       
Sbjct: 6  IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNME------- 57

Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
               I      D G Y C   + +   +    +
Sbjct: 58 ---YRINKPRAEDSGEYHCVY-HFVSAPKANATI 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 2  IVIPSQL--IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
          IV PS    + A     + L C +   P     WT  +G  + E     +  E       
Sbjct: 14 IVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQKEDTVR--- 68

Query: 60 YMRLYIGSLSKSDFGTYKCNAKN 82
            RL + ++   D G Y C   +
Sbjct: 69 --RLVLPAVQLEDSGEYLCEIDD 89

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
              C V +   P+  W H++   + +  +Y               L I  +   D G Y 
Sbjct: 501 NFYCRVIASSPPVVTW-HKDDRELKQSVKYMKRYNGNDYG-----LTINRVKGDDKGEYT 554

Query: 78  CNAKNTLGGSEGVIKV 93
             AKN+ G  E ++ +
Sbjct: 555 VRAKNSYGTKEEIVFL 570

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 5   PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMR 62
            +Q +       +   C  +  P P   W      L+   S  R  ++ +          
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT-------- 442

Query: 63  LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
           L +      D GTY C A N  G       ++
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK-FYMRLYIGSLSKSDFG 74
          P TL+C  E  P P   W      +  +            S   F++R+  G  S+ D G
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85

Query: 75 TYKCNAKNTLG 85
           Y C A+N LG
Sbjct: 86 VYVCVARNYLG 96

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
                   +   +  P  ++C     +P+P   W   +GS + +                
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITIRGG------ 165

Query: 60  YMRLYIGSLSKSDFGTYKCNAKNTLG 85
             +L I    KSD G Y C   N +G
Sbjct: 166 --KLMITYTRKSDAGKYVCVGTNMVG 189

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK-FY 60
          +  PS LI      P TL+C  E  P P   W      +  +            S   F+
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71

Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
          +R+  G  S+ D G Y C A+N LG
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +     + + PK    W   NG  I   ++Y    +          L+I +   +D   
Sbjct: 25 RVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYIFEHKGCQR-----ILFINNCQMTDDSE 77

Query: 76 YKCNAKNT 83
          Y   A + 
Sbjct: 78 YYVTAGDE 85

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           LT+ C  +       + +  N  ++ +GS   + + +         L+   +   D G Y
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV-SVRNGD------LFFKKVQVEDGGVY 316

Query: 77  KCNAKNTLGGSEGVIKV 93
            C A          +++
Sbjct: 317 TCYAMGETFNETLSVEL 333

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
             C    +P     W       +    ++    E  +      RL I +L K+D  TY 
Sbjct: 27 VFTCKT-EHPAATVTWRK-GLLELRASGKHQPSQEGLTL-----RLTISALEKADSDTYT 79

Query: 78 CNAKNT 83
          C+    
Sbjct: 80 CDIGQA 85

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 18  TLDCHVESYPKPITFWTHENGSL------IHEGSRYHMWTEKFSSYKFYM-RLYIGSLSK 70
            L C     P P   W  E          + +G+R        + ++     + I +L +
Sbjct: 40  ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99

Query: 71  SDFGTYKCNAKNTLG 85
            D GTY+C A N   
Sbjct: 100 EDTGTYECRASNDPD 114

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
            L             W   +  L+ + +   +     +       L +  ++  D G Y+
Sbjct: 144 DLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLSVRGTTH------LLVHDVALEDAGYYR 196

Query: 78  CNAKNTLGGSEG 89
           C       G + 
Sbjct: 197 CVLTFAHEGQQY 208

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 2   IVIPSQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHEGSRYHMWTE------ 52
           I+ P + I A L + LT+ C V      P     W   N + I         TE      
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288

Query: 53  -KFSSYKFYMRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKV 93
            + +     + L    +++ D    +KC   NTL        V
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 16  PLTLDC-------HVESYPKPITFWTHENGSL-IHEGSRYHMWTEKFSSYKFYMRLYIGS 67
           P+ L C            P+    W   + +  +       MW +  +       L++  
Sbjct: 35  PVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-------LWLLP 87

Query: 68  LSKSDFGTYKCNAKNTLGGSEGVIKV 93
             + D GTY C  +N     +  I++
Sbjct: 88  ALQEDSGTYVCTTRNASYCDKMSIEL 113

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L C +     P T W   +G  + E     +  +         RL +      D G 
Sbjct: 27 RVVLTCELSRVDFPAT-WYK-DGQKVEESELLVVKMDGRKH-----RLILPEAKVQDSGE 79

Query: 76 YKCNAKN 82
          ++C  + 
Sbjct: 80 FECRTEG 86

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            TL C V    +    W   +G  +   S+  +     +      RL +    +++ G 
Sbjct: 28 SATLSCEVAQ-AQTEVTWYK-DGKKLSSSSKVRVEAVGCTR-----RLVVQQAGQAEAGE 80

Query: 76 YKCNAKNT 83
          Y C A   
Sbjct: 81 YSCEAGGQ 88

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 12/85 (14%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
           V   +    R  A +T  C  +S  P     WT  +   +   +               
Sbjct: 13 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--------- 63

Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
            L I ++  SD GTY C   N   
Sbjct: 64 --LTIRNVQPSDAGTYVCTGSNMFA 86

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 9/93 (9%)

Query: 2   IVIPSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
                      +     L C   E        W   + S           T         
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV------ 177

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             + + + S    GTY C  +N +G  + ++++
Sbjct: 178 --ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 22/114 (19%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPIT----FWTHENGSLIHEGSRYHMWTEKFSSY 57
           I  P Q I         L C     P+        W               +++      
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62

Query: 58  KFYMR------------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            +Y                    + + +L  SD GTY+C  K   G +     +
Sbjct: 63  NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
          P   +   E     +  W    GS I   ++Y + TE          L +  +  +D G+
Sbjct: 25 PAVFEAETERAGVKVR-WQR-GGSDISASNKYGLATEGTRH-----TLTVREVGPADQGS 77

Query: 76 YKCNAKNT 83
          Y   A ++
Sbjct: 78 YAVIAGSS 85

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)

Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
            + +C +          WT   G  +   SR+    +          L +   + SD G
Sbjct: 25 SCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQATRQGRKY-----ILVVREAAPSDAG 78

Query: 75 TYKCNAKNTLG 85
              + +    
Sbjct: 79 EVVFSVRGLTS 89

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 15/87 (17%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I +          + L L C     P P   W   N   +   ++               
Sbjct: 6  ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETK--------------K 50

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
             +  +     GTY C+  N     +
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQD 77

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 19/78 (24%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             T  C     P P      +    +  G                      ++++   GT
Sbjct: 202 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-------------------TVTRDLEGT 242

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C A++T G     + V
Sbjct: 243 YLCRARSTQGEVTREVTV 260

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 3/93 (3%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
             +    L+   + +   L C  E YPK    WT  +  ++   +       +   +   
Sbjct: 118 NKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177

Query: 61  MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             L    ++ +    + C  +          ++
Sbjct: 178 STL---RINTTTNEIFYCTFRRLDPEENHTAEL 207

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           I+   + +         L C     P     W   NG+++   SR+     + S      
Sbjct: 355 IMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRH----PRISVLNDGT 408

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            L    +  SD G Y C   N  G S     +
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 8/65 (12%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
          TL C +         W       + +G RY +  +          L I  LS +D G Y 
Sbjct: 27 TLQCELS--KVAPVEWKK-GPETLRDGGRYSLKQDGTRC-----ELQIHDLSVADAGEYS 78

Query: 78 CNAKN 82
          C    
Sbjct: 79 CMCGQ 83

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L C +         WT  NG  + E  R  +  +         +L I +    D G 
Sbjct: 24 EICLKCEISENIPGK--WTK-NGLPVQESDRLKVVQKGRIH-----KLVIANALTEDEGD 75

Query: 76 YKCNAKN 82
          Y      
Sbjct: 76 YVFAPDA 82

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 19/92 (20%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
                        +  T  C     P P      +    +  G                 
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-------------- 418

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
                ++++   GTY C A++T G     + V
Sbjct: 419 -----TVTRDLEGTYLCRARSTQGEVTREVTV 445

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 1   MIVIPSQ--LIGARLAAPLTLDCHV----ESYPKPITFWTHENGSLIHEGSRYHMWTE-- 52
           +I  P+   +        L + C V        +   +WT  +G    + +      E  
Sbjct: 226 VIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVTINESI 284

Query: 53  ---KFSSYKFYMRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKV 93
              +         L I  ++  D    Y C+A++  G      KV
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 10/74 (13%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
            +D +  S  KP   W      +  +     +             L       S+ G Y 
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPEGM--------NLSFLIALISNNGNYT 193

Query: 78  CNAKNTLGGSEGVI 91
           C       G    +
Sbjct: 194 CVVTYPENGRTFHL 207

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYM----RLYIGSLSK 70
            TL C ++   +P    W   +G ++                +       +L I SL  
Sbjct: 19 TGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL 77

Query: 71 SDFGTYKCNAKNTLG 85
          SD G Y+C       
Sbjct: 78 SDTGQYQCLVFLGHQ 92

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 14/74 (18%)

Query: 16  PLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           P  L C  +  P+P+   W   +   +     +               L++  L+     
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGP----------QRSLHVPGLN--KTS 169

Query: 75  TYKCNAKNTLGGSE 88
           ++ C A N  G + 
Sbjct: 170 SFSCEAHNAKGVTT 183

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 15/70 (21%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C     P+  +     N SLI   +                  +I + + +D G 
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYFIDAATVNDSGE 68

Query: 76 YKCNAKNTLG 85
          Y+C    +  
Sbjct: 69 YRCQTNLSTL 78

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 19/74 (25%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLI---HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
           P+ L CH             +NG      H  S +H                I   +  D
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH----------------IPKATLKD 148

Query: 73  FGTYKCNAKNTLGG 86
            G+Y C        
Sbjct: 149 SGSYFCRGLVGSKN 162

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 20/113 (17%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSL-------IHEGSRYHMWTEK 53
           + V  ++++       +T+ C           W                  +  + +   
Sbjct: 138 VHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGIT 197

Query: 54  FSSYKFYMR--------LYIGSLSKSDFGTYKCNAKNTLGGSEG-----VIKV 93
           + S +   R        L I +   +D G   C      G  +      ++KV
Sbjct: 198 WFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 6/74 (8%)

Query: 18 TLDCHVESYP---KPITFWTHENGSLIHEGSRYHM---WTEKFSSYKFYMRLYIGSLSKS 71
          T    V++     KP   W       +   +  H+    T +  S  +   + I     +
Sbjct: 26 TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85

Query: 72 DFGTYKCNAKNTLG 85
            G Y+C       
Sbjct: 86 FAGNYRCEVTYKDK 99

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           IV P   +         L C   +       W   NG+++  G+                
Sbjct: 344 IVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---- 398

Query: 62  RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSD 102
            L   +++  D G Y C   N++G +     +   G     
Sbjct: 399 -LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L   +  +   +  W      +   GS+Y   +           L I   S +D   
Sbjct: 33 KIRLTVELADHDAEVK-WLKNGQEIQMSGSKYIFESIGAKR-----TLTISQCSLADDAA 86

Query: 76 YKCNAKN 82
          Y+C    
Sbjct: 87 YQCVVGG 93

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLI--HEGSRYHMWTEKFSSY 57
           I +  +   A   + ++  C   S     +TF W  +N +L      +  H+  +     
Sbjct: 13  ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELM 72

Query: 58  KFYMRLYIGSLSKSDFGTYKCNAKNTLG 85
           ++   L + ++  +  G Y+C   N  G
Sbjct: 73  EYTTILRLRNVEFTSEGXYQCVISNHFG 100

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 15/68 (22%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C     P+  +     N SLI   +                  +I + +  D G 
Sbjct: 24 SVTLKCQGAYSPEDQSTQWFHNESLISSQAS---------------SYFIDAATVDDSGE 68

Query: 76 YKCNAKNT 83
          Y+C  + +
Sbjct: 69 YRCQTQLS 76

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 13/71 (18%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           P+ L CH             +NG                         YI   +  D G+
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNS-------------DFYIPKATLKDSGS 151

Query: 76  YKCNAKNTLGG 86
           Y C        
Sbjct: 152 YFCRGLVGSKN 162

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             L C +     P+  W       + +G R+ +  +          L I  L   D G 
Sbjct: 36 TAVLRCELSKMA-PVE-WWK-GHETLRDGDRHSLRQDGARC-----ELQIRGLVAEDAGE 87

Query: 76 YKCNAKN 82
          Y C    
Sbjct: 88 YLCMCGK 94

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 15/68 (22%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C V   P   +     NG+     +                   I S S +D G 
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGE 62

Query: 76 YKCNAKNT 83
          Y+C    +
Sbjct: 63 YRCQRGLS 70

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 13/78 (16%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           PL L CH            + NG                        L I   + S  GT
Sbjct: 99  PLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNS-------------NLTILKTNISHNGT 145

Query: 76  YKCNAKNTLGGSEGVIKV 93
           Y C+       +   I V
Sbjct: 146 YHCSGMGKHRYTSAGISV 163

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 18 TLDCHVESYP---KPITFWTHENGSLIHEGSRYHMW---TEKFSSYKFYMRLYIGSLSKS 71
          T    V        P+  W       +      H+    +   +S  +   L+I     +
Sbjct: 23 TFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82

Query: 72 DFGTYKCNAKNTLG 85
            G+Y+C       
Sbjct: 83 FTGSYRCEVSTKDK 96

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C+  ++ +  +     NGSL  E +                 L I +    D G 
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------------SLNIVNAKFEDSGE 65

Query: 76 YKCNAKNT 83
          YKC  +  
Sbjct: 66 YKCQHQQV 73

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 13/73 (17%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           PL L CH            +++G  +      H              + I + +  D GT
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------------NISITNATVEDSGT 148

Query: 76  YKCNAKNTLGGSE 88
           Y C  K      E
Sbjct: 149 YYCTGKVWQLDYE 161

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY---MRLYIGSLSKSDF 73
          LTL C           W   +G  I       +   K+         + + + +++  D 
Sbjct: 19 LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78

Query: 74 GTYKCNAKNTLGGSEGVIKV 93
          G YKC    +   S   +KV
Sbjct: 79 GVYKCLH-YSDSVSTKEVKV 97

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS-----RYHMWTEKFSS 56
           +  P ++    + + ++L+C  +            +   +   +     R  +  E+   
Sbjct: 5   VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64

Query: 57  YKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF 99
            K     +I S+   D G Y+C            + V     +
Sbjct: 65  GKAL--FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 105

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 10/72 (13%), Positives = 16/72 (22%), Gaps = 8/72 (11%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
           + L C    YP     W + +        R        +    Y    +  L       +
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTSHIR--------TPEGLYQVTSVLRLKPQPSRNF 172

Query: 77  KCNAKNTLGGSE 88
            C   N      
Sbjct: 173 SCMFWNAHMKEL 184

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 3  VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
            P     A++   ++L C       P   W  +  S ++        T           
Sbjct: 5  TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT---------ST 55

Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
          L +  +S  +  +Y C A       E  I+V
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 3/111 (2%)

Query: 3   VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
           V     +G  +A      C   S                    R  +  +          
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS---FS 291

Query: 63  LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQR 113
           + I  L K D G Y C A +     EG        +   ++       + +
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 5   PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS-LIHEGSRYHMWTEKFSSYKFYMRL 63
            + ++G  L  P    C   SY K    W +     L  +                 + L
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL 511

Query: 64  YIGSLSKSDFGTYKCNAKNTLGGSE 88
            +  ++++D G Y C  K      E
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGE 536

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 13/95 (13%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLI--------HEGSRYHMWT 51
            I     ++     + + + C         I +W    G+           EG     + 
Sbjct: 333 TIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE 392

Query: 52  EKFS----SYKFYMRLYIGSLSKSDFGTYKCNAKN 82
            + S           + +  L+  D G Y C    
Sbjct: 393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNG 427

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 10/73 (13%), Positives = 15/73 (20%), Gaps = 19/73 (26%)

Query: 16  PLTLDCHVESYPKPITF-WTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
            + L CH       +   +     S    H    +                 I   + S 
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFS----------------IPQANHSH 145

Query: 73  FGTYKCNAKNTLG 85
            G Y C       
Sbjct: 146 SGDYHCTGNIGYT 158

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 17/69 (24%)

Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
           +TL C     P+  +  W H NG+LI   ++                 Y    + +D G
Sbjct: 21 SVTLTCQGARSPESDSIQWFH-NGNLIPTHTQ---------------PSYRFKANNNDSG 64

Query: 75 TYKCNAKNT 83
           Y C    T
Sbjct: 65 EYTCQTGQT 73

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 6  SQLIGARLAAPLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKFYMR- 62
          S  +   L   + L+         I    W     +L+ E  R      K  +++     
Sbjct: 3  SGTVWGALGHGINLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 63 -LYIGSLSKSDFGTYKCNAKNTLG 85
           L I +L++ D GTY     +T G
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNG 85

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 9/71 (12%)

Query: 18  TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
           TL C        I +    N   +    R  +             L I  + + D G Y+
Sbjct: 129 TLTCLSNDIGANIQWLF--NSQSLQLTERMTLSQNNSI-------LRIDPIKREDAGEYQ 179

Query: 78  CNAKNTLGGSE 88
           C   N +    
Sbjct: 180 CEISNPVSVRR 190

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 9/67 (13%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           L+C V      +  W   NG  I  G  SRY +  E          L I   +K+D   
Sbjct: 26 ELECEVSEDDANVK-WFK-NGEEIIPGPKSRYRIRVEGKKH-----ILIIEGATKADAAE 78

Query: 76 YKCNAKN 82
          Y      
Sbjct: 79 YSVMTTG 85

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 3/66 (4%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
           +   V S       W   NG  +     +          K +  L    + + D G Y+
Sbjct: 27 EMAVEV-SEEGAQVMWMK-NGVELTREDSFKARYRFKKDGKRH-ILIFSDVVQEDRGRYQ 83

Query: 78 CNAKNT 83
                
Sbjct: 84 VITNGG 89

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N Length = 113

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 17  LTLDCHVE--SYPKPITFW-----THENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLS 69
           LT++C +   SY    T W        N   I +G RY    E  +S      L I  L+
Sbjct: 18  LTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRY---VETVNSGSKSFSLRINDLT 74

Query: 70  KSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
             D GTY+C      G  +  +        G  T  VT
Sbjct: 75  VEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTA-VT 111

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 17/69 (24%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
            TL C V +   P       +G  +    R                +     + S    +
Sbjct: 118 TTLTCEVMNGTDPELNLYQ-DGKHLKLSQR----------------VITHKWTTSLSAKF 160

Query: 77  KCNAKNTLG 85
           KC A N + 
Sbjct: 161 KCTAGNKVS 169

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 16 PLTLDCH--VESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYM--RLYIGSLSK 70
           + LD      S       W    +   I +  +     ++  +YK +    L I  L  
Sbjct: 16 DINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKT 75

Query: 71 SDFGTYKCNAKNTLGGSEGVIKV 93
           D   YK +  +T G +      
Sbjct: 76 DDQDIYKVSIYDTKGKNVLEKIF 98

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 17  LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
             L C  +S      FW  +NG L  E  +Y +   K         L I +LS+ D G Y
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVY 601

Query: 77  KCNA 80
           +C +
Sbjct: 602 QCLS 605

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 21/113 (18%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITF---WTHENGSLIHEGSRYHMWTEKFSSY- 57
           +    + +  R+     + C ++S  +       W   +GS   E +     +   S   
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 58  ----KFYMR-------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
               +F  R             + + ++ +SD G Y C+       S   I +
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 17/110 (15%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHEGSRYHMWT-EKFSS 56
            + + S  +   +   + + C V   E        W                ++     +
Sbjct: 7   GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66

Query: 57  YKFYMR-------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            +F  R             L +  + K+D G Y C  +           V
Sbjct: 67  GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR---LYIGSLSKSDFG 74
           L C V+        W++     ++   +  +   +    +       + +  +S SD G
Sbjct: 25 ILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84

Query: 75 TYKC 78
           Y C
Sbjct: 85 QYTC 88

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 8/84 (9%)

Query: 5  PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
           S +I   L   + + C              +N +    G R   W E    +       
Sbjct: 16 SSPVI--PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF------V 67

Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
          I  +  +  G Y+C  +       
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFR 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.81
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.78
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.76
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.74
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.73
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.72
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.71
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.71
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.71
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.7
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.7
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.7
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.7
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.69
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.68
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.68
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.68
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.68
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.68
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.67
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.67
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.67
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.66
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.65
1he7_A	126	High affinity nerve growth factor receptor; transf	99.65
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.65
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.65
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.64
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.64
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.64
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.64
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.64
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.64
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.63
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.63
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.63
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.63
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.62
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.62
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.61
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.61
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.6
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.6
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.6
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.59
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.59
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.59
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.59
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.59
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.58
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.58
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.58
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.58
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.58
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.58
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.57
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.57
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.57
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.57
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.57
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.56
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.56
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.56
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.55
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.55
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.55
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.55
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.55
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.54
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.54
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.54
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.54
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.53
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.53
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.53
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.53
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.52
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.52
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.52
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.51
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.51
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.51
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.51
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.51
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.5
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.5
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.5
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.49
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.49
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.48
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.48
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.48
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.48
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.47
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.47
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.47
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.47
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.47
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.47
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.47
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.46
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.46
2ens_A	96	Advanced glycosylation END product-specific recept	99.46
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.46
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.46
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.45
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.44
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.44
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.44
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.44
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.44
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.44
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.44
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.44
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.43
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.43
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.43
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.43
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.43
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.42
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.42
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.42
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.42
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.42
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.41
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.41
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.41
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.4
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.4
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.4
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.4
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.39
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.39
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.39
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.39
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.39
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.39
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.38
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.38
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.38
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.38
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.38
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.37
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.37
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.37
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.37
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.37
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.36
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.36
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.36
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.36
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.36
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.36
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.36
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.36
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.36
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.35
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.35
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.35
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.35
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.34
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.34
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.33
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.33
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.32
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.32
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.32
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.32
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.31
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.31
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.3
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.3
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.3
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.3
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.3
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.29
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.29
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.28
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.28
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.28
3khq_A	133	B-cell antigen receptor complex-associated protei	99.28
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.28
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.27
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.27
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.27
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.27
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.27
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.27
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.27
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.27
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.27
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.27
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.27
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.26
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.26
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.26
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.25
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.25
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.24
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.23
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.23
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.23
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.22
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.22
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.22
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.22
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.22
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.21
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.21
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.21
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.21
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.2
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.2
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.2
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.19
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.19
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.19
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.19
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.18
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.18
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.17
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.17
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.17
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.17
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.17
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.16
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.16
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.16
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.16
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.16
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.15
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.15
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.14
1xt5_A	135	Variable region-containing chitin-binding protein	99.14
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.14
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.14
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.14
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.13
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.13
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.13
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.13
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.13
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.13
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.12
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.12
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.11
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.1
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.1
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.1
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.1
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.1
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.1
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.1
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.1
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.1
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.1
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.1
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.09
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.09
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.08
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.08
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.08
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.08
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.08
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.07
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.07
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.07
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.06
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.06
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.06
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.06
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.06
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.05
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.05
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.05
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.04
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.04
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.03
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.03
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.03
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.03
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.03
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.03
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.02
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.02
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.02
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.02
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.02
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.01
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.01
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.01
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.01
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.01
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.01
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.01
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.01
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.0
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.0
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.0
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.99
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.99
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.99
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.99
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.99
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.99
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.99
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.99
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.99
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.98
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.98
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.98
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.97
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.97
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.96
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.96
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.96
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.96
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.96
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.96
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.95
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.95
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.94
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.94
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.94
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.94
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.94
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.94
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.93
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.93
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.93
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.93
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.93
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.93
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.92
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.92
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.92
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.92
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.91
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.91
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.9
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.9
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.9
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.9
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.9
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.89
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.89
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.89
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.89
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.89
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.89
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.41
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.88
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.88
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.88
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.88
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.88
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.88
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.87
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.87
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.87
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.87
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.87
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.87
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.87
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.87
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.87
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.86
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.86
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.85
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.85
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.85
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.85
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.84
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.84
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.84
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.84
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.83
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.83
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.82
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.82
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.82
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.82
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.82
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.82
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.81
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.81
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.81
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.81
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.81
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.8
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.8
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.79
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.79
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.79
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.79
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.78
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.78
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.78
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.78
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.77
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.77
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.77
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.77
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.77
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.77
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.77
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.76
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.76
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.76
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.76
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.75
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.75
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.75
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.74
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.74
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.72
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.71
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.71
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.71
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.71
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.71
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.7
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.69
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.69
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.69
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.69
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.68
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.68
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.68
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.66
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.64
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.64
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.63
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.63
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.63
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.63
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.62
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.62
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.62
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.61
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.61
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.61
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.61
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.6
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.6
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.6
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.6
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.59
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.59
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.59
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.59
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.59
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.58
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.58

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.81  E-value=3.9e-19  Score=111.26  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=77.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+...+     ..+.|.|.+++.+|+|.|+|.|.|
T Consensus        17 ~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           17 LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKG-GQQLAASERLSFPADG-----AEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEECCEET-----TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEEC-cccccceeeEEEeecC-----ceEEEEEecCChhhCEEEEEEEEE
Confidence            4456778899999999999999999999999999 8888877777765544     134799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccC
Q psy16261         83 TLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~   99 (158)
                      ..|.....+.|.|..+|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999887643

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.78  E-value=5.2e-18  Score=104.80  Aligned_cols=89  Identities=22%  Similarity=0.330  Sum_probs=74.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...  .++.+....     ..++|.|.+++.+|+|.|+|.|
T Consensus         9 ~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            9 EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHSQEQGRFHIENTD-----DLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             CCCCSEEEEETTSEEEEEEEEEEESCCEEEEEET-TEECCTTGGGTEEEEECS-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred             EeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC-ceEeeeeccceeeeeccc-----ceEEEEEcCCCccCCEEEEEEE
Confidence            3456778899999999999999999999999999 8877654  356555443     1347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|..+..+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999988864

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.76  E-value=2.6e-17  Score=103.64  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=79.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A           11 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVENSE-----NGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             SCCCCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSSSEEEEECS-----SEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             EeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEEC-CEECcCCCCEEEEEcC-----CEEEEEECCCChhcCEEEEEEEEE
Confidence            3456677899999999999999999999999999 7777766677666432     134799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCCCCC
Q psy16261         83 TLGGSEGVIKVYNIGYFGSDT  103 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~~~~  103 (158)
                      ..|.....+.|.|...+..+.
T Consensus        85 ~~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             SSCEEECCEEEEEECSCSCCC
T ss_pred             CCCcEEEEEEEEEECCCCCCC
Confidence            999998899999988765543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.74  E-value=1.2e-16  Score=98.65  Aligned_cols=90  Identities=20%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A           12 TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-GVELQESSKIHYTNTS-----GVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             EECCCCEEEETTCCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EeCCcceEEeCCCeEEEEEEEEecCCCEEEEEEC-CEECCCCCCEEEEECC-----CEEEEEEcCCCcccCEEEEEEEEe
Confidence            3456677889999999999999999999999999 8888777777665443     124799999999999999999999


Q ss_pred             CCCceEEEEEEEEecc
Q psy16261         83 TLGGSEGVIKVYNIGY   98 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~   98 (158)
                      ..|.....+.|.|...
T Consensus        86 ~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           86 YKGEASDYATLDVTGG  101 (103)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCcEEEEEEEEEECC
Confidence            9999998888888653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.73  E-value=1.8e-16  Score=97.03  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.......+    .+.|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDN----VCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETT----EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCcceEEcCCCcEEEEEEEEEeCCCEEEEEEC-CEECCCCCCEEEEEcCCC----EEEEEECCCCcCCCEEEEEEEEE
Confidence            3456677899999999999999999999999999 887776666554432211    24799999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy16261         83 TLGGSEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~   97 (158)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999998888888764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.72  E-value=2.1e-16  Score=96.58  Aligned_cols=90  Identities=19%  Similarity=0.342  Sum_probs=76.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +..++..+.+.+|+.+.|.|.+.|. |.|.+.|+++ +..+....++.+....     ..+.|.|.+++.+|+|.|+|.|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-VRQLENSEKYEITYED-----GVAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEET-TEECCSSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEEC-CEECcCCCCEEEEEcC-----CeEEEEEecCChhhCeEEEEEE
Confidence            5567778889999999999999997 9999999999 8877777777665433     1347999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|.....+.|.|..
T Consensus        78 ~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ECSSCEEEEEEEEEETT
T ss_pred             ECCCCeEeEEEEEEEEe
Confidence            99999998888888765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.71  E-value=3.6e-16  Score=95.62  Aligned_cols=89  Identities=25%  Similarity=0.366  Sum_probs=75.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....++.+....     ..+.|.|.++..+|+|.|+|.|.|
T Consensus        10 ~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A           10 VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-GKAITQGGKYKLSEDK-----GGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             EECCCCEEEESSSCEEEEEEEEEESCCEEEEEET-TEECCSSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccEEEeCCCcEEEEEEEEecCCCEEEEEEC-CEECcCCCCEEEEEeC-----CEEEEEECCCCcccCEEEEEEEEe
Confidence            4456677899999999999999999999999999 8888777777766543     123699999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy16261         83 TLGGSEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~   97 (158)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999998888888764

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.71  E-value=9.1e-17  Score=97.52  Aligned_cols=85  Identities=21%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC--eeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG--SLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ..++..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +  ..+....++...  .     ..+.|.|.++..+|+|.|+|.|
T Consensus         6 ~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-~~~~~~~~~~~~~~~--~-----~~~~L~i~~~~~~D~G~Y~C~a   77 (93)
T 1wit_A            6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAK--S-----STTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCCCCEEEECTTBCCEEEEEEECCSSCEEEEECS-TTTCBCSTTSEEEEE--T-----TEEEEECTTBCGGGCEEEEEEE
T ss_pred             EcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEEC-CCCcccCCcEEEEec--C-----CEEEEEECCCChhcCEEEEEEE
Confidence            3456677899999999999999999999999999 6  666544333221  1     1247999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy16261         81 KNTLGGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v   95 (158)
                      .|..|.....+.|.|
T Consensus        78 ~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           78 KNELGEDEAIFEVIV   92 (93)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEEEE
Confidence            999998888888876

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=98.60  Aligned_cols=95  Identities=19%  Similarity=0.258  Sum_probs=77.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++.+......    .+.|.|.+++.+|+|.|+|.|.
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A           12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-GKQISPKSDHYTIQRDLDG----TCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             SSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECS-SCBCCTTCSSEEEEECTTC----EEEEEESSCCTTTCSCCEEEEE
T ss_pred             EecCcCeEEeCCCeEEEEEEEEecCCCEEEEEEC-CEECCCCCCeEEEEECCCc----EEEEEECCCChhhCEEEEEEEE
Confidence            3455667899999999999999999999999999 777664 456666544211    2369999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |..|.....+.|.|...+..+
T Consensus        87 N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             CTTCCEEECCCEEEECCSCCS
T ss_pred             ECCCeEEEEEEEEEECCCCCC
Confidence            999999888899888876554

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.1e-16  Score=98.27  Aligned_cols=87  Identities=21%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+. ..++.+....     ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~-~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G  103 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG-GAPLD-TSRVHVRTSD-----FDTVFFVRQAARSDSGEYELSVQIENM  103 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEET-TEECC-CSSCEEEECS-----SEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEEC-CEECC-CCcEEEEECC-----CeEEEEECCCChhcCEEEEEEEEeCCC
Confidence            4567788999999999999999999999999 77775 3444444322     124699999999999999999999999


Q ss_pred             ceEEEEEEEEeccC
Q psy16261         86 GSEGVIKVYNIGYF   99 (158)
Q Consensus        86 ~~~~~~~l~v~~~~   99 (158)
                      .....+.|.|...|
T Consensus       104 ~~~~~~~l~V~~~P  117 (118)
T 2e7c_A          104 KDTATIRIRVVEKA  117 (118)
T ss_dssp             EECCEEEEEEECCC
T ss_pred             eEEEEEEEEEEcCC
Confidence            98889999888765

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.70  E-value=3.2e-16  Score=96.10  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+........+    .+.|.|.+++..|+|.|+|.|.|.
T Consensus        10 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~   84 (100)
T 2kdg_A           10 QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN-GRTVQSDDLHKMIVSEKG----LHSLIFEVVRASDAGAYACVAKNR   84 (100)
T ss_dssp             CCCCCEEEETTCCEEEEEECEEESCCEEEEEET-TEEECCCSSSCEEEETTT----EEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eCCCCEEecCCCEEEEEEEEEeeCCCEEEEEEC-CEECcCCCcEEEEEcCCC----eEEEEECCCCcccCEEEEEEEEcC
Confidence            355667889999999999999999999999999 877765543322222211    237999999999999999999999


Q ss_pred             CCceEEEEEEEEecc
Q psy16261         84 LGGSEGVIKVYNIGY   98 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~   98 (158)
                      .|.....+.|.|...
T Consensus        85 ~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           85 AGEATFTVQLDVLAK   99 (100)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CCeEEEEEEEEEEec
Confidence            999988888888653

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.70  E-value=6.5e-16  Score=94.53  Aligned_cols=90  Identities=21%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.....+     ..+.|.|.+++.+|+|.|+|.|
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            8 FKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-RQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEECCCCEEEETTCCEEEEEEEEEESCCEEEEEET-TEECCCBTTEEEEECGG-----GEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCCCEEEEECCC-----CEEEEEEccCCcCCCEEEEEEE
Confidence            34556677899999999999999999999999999 7766544 444433222     1236999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|.....+.|.|.+
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           82 VNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCceeEEEEEEEEC
Confidence            99999998888888764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.69  E-value=5.2e-16  Score=96.17  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      .++.+.|.|.+.|.|.|.++|+++ +..+..+.+........+.....+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEEC-CEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            467789999999999999999999 8888766554232211122333457999999999999999999999999999999


Q ss_pred             EEEeccC
Q psy16261         93 VYNIGYF   99 (158)
Q Consensus        93 l~v~~~~   99 (158)
                      |.|...|
T Consensus        94 l~V~~~P  100 (103)
T 1wwb_X           94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEECCCC
Confidence            9887655

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=97.31  Aligned_cols=88  Identities=23%  Similarity=0.301  Sum_probs=72.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+. ...++.....+        .|.|.+++.+|+|.|+|.|
T Consensus        11 i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A           11 ILQGPANQTLAVDGTALLKCKATGDPLPVISWLKE-GFTFPGRDPRATIQEQG--------TLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             EEECCCCEEEESSSEEEECCEEECSSCCEEEEEES-SSEESSSCSSCEECTTC--------CEEEESCCTTTCCEEEEEE
T ss_pred             EEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEEC-CEECCCCCCCEEEcCCC--------EEEEccCCcccCEEEEEEE
Confidence            34456677789999999999999999999999999 66665 34455444333        6999999999999999999


Q ss_pred             EcCCCceEEEEEEEEecc
Q psy16261         81 KNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~   98 (158)
                      .|..|.....+.|.|...
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           82 TSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             ECSSCCCBCCEEEEEESC
T ss_pred             EcCCCCEEEEEEEEEecC
Confidence            999999988888888764

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=98.86  Aligned_cols=97  Identities=19%  Similarity=0.294  Sum_probs=77.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....+........+    .+.|.|.+++.+|+|.|+|.|.
T Consensus        12 i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A           12 FLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-GKPVRPDSAHKMLVRENG----VHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             EEECCCEEEEESSSCBCCEEEEECSSCCEEECBBS-SSBCCCCSSEEEEECTTS----CEEEEESSCCGGGCSBBCEEEE
T ss_pred             EEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCCceEEEEecCC----eEEEEEeeCCcccCEEEEEEEE
Confidence            34556778899999999999999999999999999 776665544433332211    2379999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSDT  103 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~~  103 (158)
                      |..|.....+.|.|...+..+.
T Consensus        87 n~~g~~~~~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKESGPS  108 (110)
T ss_dssp             CSSCEEEECCEEEEECCCCSSS
T ss_pred             CCCCEEEEEEEEEEeCCCCCCC
Confidence            9999998889999988765543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=4.2e-16  Score=98.57  Aligned_cols=95  Identities=18%  Similarity=0.314  Sum_probs=77.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++.+.....    ..++|.|.+++.+|+|.|+|.|.
T Consensus        19 ~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           19 IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-NEMVQFNTDRISLYQDNT----GRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             SSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEET-TEECCCCBTTEEEEECTT----CEEEEEEEEECGGGCEEEEEEEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEEC-CEECcCCCCeEEEEeCCC----CeEEEEECCCCcccCEEEEEEEE
Confidence            3456777899999999999999999999999999 776654 45666654431    12379999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |..|.....+.|.|...+..+
T Consensus        94 N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             ETTEEEEEEEEEEEECCSCCC
T ss_pred             cCCCeEEEEEEEEEeCCCCCC
Confidence            999999999999998876543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.67  E-value=1.7e-16  Score=98.90  Aligned_cols=89  Identities=20%  Similarity=0.352  Sum_probs=75.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.+++..|+|.|+|.|.
T Consensus        17 i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             EEECCCCEEESSSSCEECCEEEECSSCCBCCBCSS-SSCCTTCSSEEEEECS-----SEEEEEECCCCSSCCSEEEECCB
T ss_pred             EEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEC-CEECCCCCCEEEEECC-----CEEEEEECcCCchhCEEEEEEEE
Confidence            44567778899999999999999999999999999 7777767777666532     12479999999999999999999


Q ss_pred             cCCCceEEEEEEEEe
Q psy16261         82 NTLGGSEGVIKVYNI   96 (158)
Q Consensus        82 n~~g~~~~~~~l~v~   96 (158)
                      |..|.....+.|.|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999998888888774

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.2e-16  Score=95.49  Aligned_cols=84  Identities=24%  Similarity=0.247  Sum_probs=67.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..........        .+.|.|.++..+|+|.|+|.|.|
T Consensus        15 ~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A           15 SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYARSTCEAG--------VAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             EECCCCEEECTTCCEEEECEEEEESCCCCEEEES-SSBCSSCCCEEETT--------EEEEEECSCCTTCCBCEEEEEEC
T ss_pred             eecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEEC-CEECcccceEeeCC--------eEEEEECCCChhhCEEEEEEEEE
Confidence            3455667789999999999999999999999999 77665443221111        23799999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy16261         83 TLGGSEGVIKVYN   95 (158)
Q Consensus        83 ~~g~~~~~~~l~v   95 (158)
                      ..|.....+.|.|
T Consensus        86 ~~g~~~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQVSCSAWVTV   98 (99)
T ss_dssp             SSCEEEEECCEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9999888777765

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5.3e-16  Score=95.69  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+.+.+|+.+.|.|.+  .|.|.+.|+|+ +..+..+.++.+...+     ..+.|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~-g~~l~~~~r~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKN-GLPVQESDRLKVVQKG-----RIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEET-TEECCCCSSEEEEECS-----SEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEEC-CEECCCCCcEEEEEeC-----CEEEEEECCCChhhCEEEEEEEcCC
Confidence            45667789999999999999  78999999999 8888888888776554     2347999999999999999999998


Q ss_pred             CCceEEEEEEEEeccCC
Q psy16261         84 LGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~  100 (158)
                        ..+....|.|..+|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              456677777776653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.66  E-value=2.4e-15  Score=99.54  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+......    .+.|.|.+++..|+|.|+|.|.|
T Consensus        45 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~-g~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N  119 (154)
T 1fhg_A           45 TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDEEG----NCSLTISEVCGDDDAKYTCKAVN  119 (154)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEECTTC----EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EccCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC-CEECCCCCcEEEEECCCC----eEEEEECCCChhcCEEEEEEEEE
Confidence            3445667789999999999999999999999999 888777777766543211    24799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCCC
Q psy16261         83 TLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~~  101 (158)
                      ..|.....+.|.|...+..
T Consensus       120 ~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          120 SLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             TTEEEEEEEEEEEECC---
T ss_pred             CCCeEEEEEEEEEeCcCcC
Confidence            9999988889988876533

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.66  E-value=6.5e-15  Score=101.61  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=73.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCN   79 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~   79 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.+.+.|+++ +..+. ...++.+.....+    .+.|.|.++.. .|+|.|+|.
T Consensus         9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            9 IIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET-TEECCTTSTTEEEEEETTT----EEEEEESSCCTTTTCSEEEEE
T ss_pred             EEcCCCceEEecCCEEEEEEEEccCCCCeEEEEEC-CEECCCCcceeEEEEcCCC----eEEEEEEecCCCCcCceEEEE
Confidence            34566777899999999999999999999999999 77765 4466665543211    24799999999 999999999


Q ss_pred             EEcCCCc-eEEEEEEEEecc
Q psy16261         80 AKNTLGG-SEGVIKVYNIGY   98 (158)
Q Consensus        80 a~n~~g~-~~~~~~l~v~~~   98 (158)
                      +.|..|. ....+.|.|...
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECT
T ss_pred             EEeCCCCeEEeeEEEEEecc
Confidence            9999998 677777777653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.65  E-value=8.9e-16  Score=93.55  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+.|.| |.+.|+++ +..+....++.+. ..        .|.|.+++.+|+|.|+|.|.|.
T Consensus        14 ~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~-g~~~~~~~~~~~~-~~--------~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A           14 VEVESLLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLVESNRTRIT-GE--------EVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             TBBCCEEECTTSCEEEECCEESSC-CEEEEEBT-TBCCCCCSSEEEC-SS--------EEEESSCCGGGSEEEEEEEEET
T ss_pred             cCcceEEEcCCCeEEEEEECCCCC-CceEEEEC-CEecCCCCCEEEe-CC--------EEEECCCChHHCEEEEEEeccC
Confidence            345667789999999999999997 89999998 8777766666554 22        6999999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy16261         84 LGGSEGVIKVYN   95 (158)
Q Consensus        84 ~g~~~~~~~l~v   95 (158)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~l~V   94 (95)
T 2ckn_A           83 SGSDTTYFSVNV   94 (95)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999888887766

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.65  E-value=1.6e-15  Score=97.14  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEee--cccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEK--FSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV   90 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~   90 (158)
                      .+..+.|.|.+.|.|.|.++|+|+ |..+....++......  .+.....+.|.|.++...|+|.|+|.|.|.+|...+.
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~kn-G~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEET-TEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEEC-CEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            466789999999999999999999 8888777665443221  0111123579999999999999999999999999999


Q ss_pred             EEEEEeccCCC
Q psy16261         91 IKVYNIGYFGS  101 (158)
Q Consensus        91 ~~l~v~~~~~~  101 (158)
                      +.|.+...|..
T Consensus        93 ~~l~v~~~P~~  103 (126)
T 1he7_A           93 IMAAFMDNPFE  103 (126)
T ss_dssp             EEECCCSCTTS
T ss_pred             EEEEEEcCCCC
Confidence            88888776543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=7.3e-16  Score=97.47  Aligned_cols=89  Identities=19%  Similarity=0.258  Sum_probs=74.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.. ..++.....+        .|.|.+++.+|+|.|+|.|.
T Consensus        12 ~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~--------~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A           12 RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKD-GVLVSTQDSRIKQLENG--------VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             SBCCCCEEEETTCEEEEECBCCCSSCCEEEEEES-SSBCCTTSTTEEEEETT--------EEEEESCCGGGCCCEEEEEE
T ss_pred             EcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEEC-CEECcCCCCeEEEccCC--------EEEEccCCcCCCEEEEEEEE
Confidence            3456667899999999999999999999999999 766653 4566665555        79999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~  100 (158)
                      |..|.....+.|.|...+.
T Consensus        83 n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             CSSCEEEEECCEEEECCSC
T ss_pred             cCCCcEEEEEEEEEEeCCC
Confidence            9999988888888887643

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.65  E-value=4.7e-16  Score=96.64  Aligned_cols=89  Identities=19%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++......       +.|.|.+++.+|+|.|+|.|.|.
T Consensus        15 ~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~-------~~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A           15 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKD-NETLVEDSGIVLKDGN-------RNLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             SCCCCEEEETTCCEEEECBCC----CCEEEEES-SSBCCCBTTEEEETTT-------TEEEECSCCGGGCEEEEEEEC--
T ss_pred             cCCCCeEEeCCCeEEEEEECcCcCCCeEEEEEC-CeEcccCCCeEEeCCC-------cEEEEeecCcccCEEEEEEEEeC
Confidence            345667789999999999999999999999999 7666555444443221       26999999999999999999999


Q ss_pred             CCceEEEEEEEEeccCC
Q psy16261         84 LGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~  100 (158)
                      .|.....+.|.|...+.
T Consensus        87 ~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           87 LGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             --CEEEEEEEEEEC---
T ss_pred             CCceEEEEEEEEeCCCc
Confidence            99999999998887654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.64  E-value=9.7e-15  Score=90.98  Aligned_cols=92  Identities=13%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCC---CeeEEEcCCCeeeec---CCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPK---PITFWTHENGSLIHE---GSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      ..+..+.+.+|+.+.|.|.+.|.|.   |.+.|+|+ +.....   ..++.+..... ......+.|.|.+++.+|+|.|
T Consensus         9 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (108)
T 3cx2_A            9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKG-KWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSY   87 (108)
T ss_dssp             BCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEET-TTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEE
T ss_pred             eCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccC-CcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEE
Confidence            4567788999999999999999998   99999998 522211   23444432110 1111245799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEe
Q psy16261         77 KCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v~   96 (158)
                      .|.|.|..|..++.+.|.|.
T Consensus        88 ~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           88 RCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEEEe
Confidence            99999999999999998875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.64  E-value=2.6e-15  Score=108.62  Aligned_cols=91  Identities=26%  Similarity=0.358  Sum_probs=72.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +...+..+.+.+|+.+.|.|.+.|.|.+.+.|+++ +..+... .++.+....++    .+.|.|.+++.+|+|.|+|.|
T Consensus         7 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            7 FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQEFKGG----YHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSCCEEEEEET-TEECCCCSSSEEEEEETTT----EEEEEESSCCGGGCSEEEEEE
T ss_pred             eeecccceEEeCCCcEEEEEEEeCCCCCeEEEEEC-CEEcccCCCeEEEEECCCC----EEEEEEccCChhhCeEEEEEE
Confidence            34556778899999999999999999999999999 7666543 45555443211    237999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|.....+.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEV   98 (305)
T ss_dssp             EETTEEEEEEEEEEECE
T ss_pred             EcCCCCccceEEEEEec
Confidence            99999887777777654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.64  E-value=4.2e-15  Score=90.48  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=67.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |..+++.+.+.+|+.+.|.|.+.+ +.+.+.|+|+ +..+..+.++.+...+     ..+.|.|.+++.+|+|.|+|.|.
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~-g~~i~~~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T 1waa_A            8 VEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLK-GQPLAASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAA   80 (93)
T ss_dssp             EEECCCCEEEETTSCEEEEEEESS-SSCCCEEEET-TEECCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEET
T ss_pred             eeccCcceEEeCCCCEEEEEEECC-CCCeEEEEEC-CEECcCCCCEEEEEEC-----CEEEEEECCCChhhCEEEEEEEC
Confidence            345667788999999999999976 5588999999 8888777777776543     12479999999999999999998


Q ss_pred             cCCCceEEEEEEEEec
Q psy16261         82 NTLGGSEGVIKVYNIG   97 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~   97 (158)
                      |.    ..+..|.|..
T Consensus        81 n~----~~sa~L~V~~   92 (93)
T 1waa_A           81 NT----KSAANLKVKE   92 (93)
T ss_dssp             TE----EEEEEEEEEC
T ss_pred             CC----cEEEEEEEEc
Confidence            84    3455666543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.64  E-value=6.1e-15  Score=100.01  Aligned_cols=90  Identities=21%  Similarity=0.314  Sum_probs=73.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....++.+...+     ..+.|.|.+++.+|+|.|+|.+.|
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A           11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDG-----RTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             EECCCCEEEETTSEEEEEEEEEEESCCEEEEEET-TEEECCCSSEEEEESS-----SEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             cccCCceEEeCCCcEEEEEEEecCCCCEEEEEEC-CEECCCCccEEEEeCC-----CEEEEEEecCCccCCEEEEEEEEC
Confidence            3456677899999999999999999999999999 8877777777666543     134799999999999999999999


Q ss_pred             CCCceEEEEEEEEecc
Q psy16261         83 TLGGSEGVIKVYNIGY   98 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~   98 (158)
                      ..|.......|.|...
T Consensus        85 ~~~~~~~~~~l~v~~~  100 (197)
T 3lcy_A           85 EVGEVETSSKLLLQAT  100 (197)
T ss_dssp             SSCEEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEEcC
Confidence            9998877776666543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=1e-14  Score=93.39  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             ecCceEEEecCCCEEEEeEEeec---CCCeeEEEcCCCee-ee--cCCeEEEEEee-cccceEEEEEEEcCCCCCCCeEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESY---PKPITFWTHENGSL-IH--EGSRYHMWTEK-FSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      ..|+.+.+.+|+.+.|.|.+.+.   |.|.+.|+|+ ... +.  .+.++.+.... .......++|.|.+++..|+|.|
T Consensus        12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kg-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y   90 (126)
T 2dav_A           12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKG-KWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   90 (126)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEES-SSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeC-cCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEE
Confidence            45677889999999999999875   8999999998 422 11  13455543221 01111235899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec-cCCCC
Q psy16261         77 KCNAKNTLGGSEGVIKVYNIG-YFGSD  102 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v~~-~~~~~  102 (158)
                      +|.+.|..|..++.+.|.|.. .+..+
T Consensus        91 ~Cevsn~~g~~~~~~~L~V~~~~~~~p  117 (126)
T 2dav_A           91 RCEVTYKDKFDSCSFDLEVHESTGTTP  117 (126)
T ss_dssp             EEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence            999999999999999999988 44333

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=90.51  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+.+.+|+.+.|.|.+.+ |.|.+.|+|+ +..+..+.++.+...+ .    .+.|.|.+++.+|+|.|+|.|.|    
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~-g~~l~~~~~~~~~~~~-~----~~~L~I~~~~~~D~G~Y~C~a~n----   72 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKD-GERLASQGRVQLEQAG-A----RQVLRVQGARSGDAGEYLCDAPQ----   72 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEET-TEECCCCSSEEEEECS-S----CEEEEESSCSSTTCEEEEEECTT----
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEEC-CEEccccccEEEeecC-C----eEEEEecCCCCcccEEEEEEECC----
Confidence            4677899999999999966 8899999999 8988888888776654 1    23799999999999999999855    


Q ss_pred             eEEEEEEEEec
Q psy16261         87 SEGVIKVYNIG   97 (158)
Q Consensus        87 ~~~~~~l~v~~   97 (158)
                      ....+.|.|..
T Consensus        73 ~~~~a~l~V~e   83 (84)
T 2lu7_A           73 DSRIFLVSVEE   83 (84)
T ss_dssp             TCEEEEEEECC
T ss_pred             EEEEEEEEEEC
Confidence            44556666653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.63  E-value=2.4e-15  Score=118.11  Aligned_cols=88  Identities=20%  Similarity=0.428  Sum_probs=73.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+....     ..++|.|.++..+|+|.|+|.|.|..
T Consensus       390 ~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~A~N~~  463 (570)
T 3b43_A          390 KPHPVETLKGADVHLECELQGTPPFQVSWHKD-KRELRSGKKYKIMSEN-----FLTSIHILNVDSADIGEYQCKASNDV  463 (570)
T ss_dssp             CCCCEEECTTCCEEEEEEEESSSSCCCEEEET-TEECCSSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCceeecCCCEEEEEEEEecCCCCEEEEEEC-CEECcCCCCEEEEEcC-----CEEEEEECCCChhhCEEEEEEEEECC
Confidence            34556778999999999999999999999999 8888777777665443     12479999999999999999999999


Q ss_pred             CceEEEEEEEEecc
Q psy16261         85 GGSEGVIKVYNIGY   98 (158)
Q Consensus        85 g~~~~~~~l~v~~~   98 (158)
                      |.......|.|..+
T Consensus       464 G~~~~~~~l~v~~~  477 (570)
T 3b43_A          464 GSDTCVGSITLKAP  477 (570)
T ss_dssp             CEEEEEEEEEECCC
T ss_pred             CeEEEEEEEEeccC
Confidence            99888877776654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.63  E-value=6.1e-15  Score=105.67  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=75.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....++.+....     ..+.|.|.+++..|+|.|+|.+.
T Consensus         8 ~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             EEECCCCEEEETTCCEEEEEEEESSSCCEEEEEET-TEECCSSSSEEEEEET-----TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEccccceEecCCCcEEEEEEEEcCCCCEEEEEEC-CEECcCCCcEEEEEcC-----CEEEEEEecCCcccCEEEEEEEE
Confidence            34566777899999999999999999999999999 8877766666554332     12479999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccC
Q psy16261         82 NTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~   99 (158)
                      |..|.....+.|.|...+
T Consensus        82 n~~g~~~~~~~l~V~~~p   99 (284)
T 2rik_A           82 NVAGKDSCSAQLGVQEPP   99 (284)
T ss_dssp             ETTEEEEEEEEEEEECCC
T ss_pred             ECCceEEEEEEEEccCCC
Confidence            999988777777776543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.63  E-value=5.8e-15  Score=100.40  Aligned_cols=91  Identities=26%  Similarity=0.358  Sum_probs=72.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+... .++.+.....+    .+.|.|.+++.+|+|.|+|.+
T Consensus         7 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            7 FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQEFKGG----YHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET-TEECCCCSSSEEEEEETTT----EEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEEC-CEECccCCCcEEEEEcCCC----EEEEEECcCCHHhCEEEEEEE
Confidence            34556677899999999999999999999999999 7666543 46655543311    237999999999999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|.....+.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEV   98 (197)
T ss_dssp             EETTEEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEcC
Confidence            99988877777776654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.63  E-value=3.1e-15  Score=102.43  Aligned_cols=96  Identities=13%  Similarity=0.134  Sum_probs=70.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCC-----CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPK-----PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~-----p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |..++..+.+.+|+.+.|.|.+.+.|.     +.+.|++.++.......++.+....  ......+|.|.+++.+|+|.|
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y   82 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQ--LPLGKALFHIPSVQVRDSGQY   82 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGG--GGGTEEEEEECSCCGGGCEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeecc--ccCCeeEEEECCCCHHHCcEE
Confidence            455777788999999999999999886     8999999425554445555544321  011234799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEeccC
Q psy16261         77 KCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      +|.+.|..+.....+.|.|...+
T Consensus        83 ~C~~~~~~~~~~~~~~l~V~~~~  105 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLTVKVKASY  105 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCC
T ss_pred             EEEEEeCCCcceEEEEEEecCCC
Confidence            99999998877777878776643

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.63  E-value=2.8e-15  Score=104.05  Aligned_cols=86  Identities=20%  Similarity=0.351  Sum_probs=67.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....++.........    +.|.|.+++..|+|.|+|.+.|..|.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~  101 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGS  101 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEET-TEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEEC-CccccccccccceeeecCc----ceEEEecCCcccCEEEEEEEecccCc
Confidence            567789999999999999999999999999 7776544332111111011    26999999999999999999999998


Q ss_pred             eEEEEEEEEec
Q psy16261         87 SEGVIKVYNIG   97 (158)
Q Consensus        87 ~~~~~~l~v~~   97 (158)
                      ....+.|.|..
T Consensus       102 ~~~~~~l~V~~  112 (231)
T 3ojm_B          102 INHTYHLDVVE  112 (231)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ccccEEEEEEc
Confidence            88777777765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=7e-15  Score=101.72  Aligned_cols=91  Identities=21%  Similarity=0.355  Sum_probs=74.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...  .++.+....     ..+.|.|.++..+|+|.|+|.|.|
T Consensus        24 ~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~-g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n   97 (215)
T 3mtr_A           24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRD-GQLLPSSNYSNIKIYNTP-----SASYLEVTPDSENDFGNYNCTAVN   97 (215)
T ss_dssp             CCSEEEECTTCCEEEEEEEEEESCCEEEEEET-TEESSCSSSCSEEEEEET-----TEEEEEECCCSGGGCEEEEEEEEC
T ss_pred             CCceEEEECCCCEEEEEEEeecCCCEEEEEEC-CeECCCCCCccEEEecCC-----CeeEEEEecCChhhCeEEEEEEEE
Confidence            44557788999999999999999999999999 7777654  455554322     124799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCCC
Q psy16261         83 TLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~~  101 (158)
                      ..|.....+.|.+...+..
T Consensus        98 ~~g~~~~~~~l~v~~~P~~  116 (215)
T 3mtr_A           98 RIGQESLEFILVQADTPSS  116 (215)
T ss_dssp             SSCEEEEEEEEEECCCCCC
T ss_pred             CCCceEEEEEEEECCCCCC
Confidence            9999988888888766544

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=93.59  Aligned_cols=86  Identities=16%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ++..+.+.+|+.+.|.|.+.+.| |.+.|+++ +..+....++.+. ..        .|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~-g~~~~~~~~~~~~-~~--------~L~i~~v~~~D~G~Y~C~a~n~~   77 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLAESNRTRIT-GE--------EVEVQDSVPADSGLYACVTSSPS   77 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEES-SSBCCCCSSEEEC-SS--------EEEETTCCTTTCEEEEEEEEETT
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEEC-CEECCCCCcEEEE-CC--------EEEEccCCHHHCEEEEEEEEeCC
Confidence            34556678999999999999987 79999999 7777666666554 22        69999999999999999999999


Q ss_pred             CceEEEEEEEEeccCCC
Q psy16261         85 GGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        85 g~~~~~~~l~v~~~~~~  101 (158)
                      |.....+.|.|...++.
T Consensus        78 g~~~~~~~l~V~~~~~s   94 (99)
T 2cr3_A           78 GSDTTYFSVNVSDALPS   94 (99)
T ss_dssp             EEEEEEEEECBCSCCSC
T ss_pred             ceEEEEEEEEEecCCCC
Confidence            99888888888776543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.62  E-value=6.6e-15  Score=115.62  Aligned_cols=88  Identities=25%  Similarity=0.460  Sum_probs=71.5

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+.+.+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.+....     ..++|.|.++..+|+|.|+|.|.|.
T Consensus        10 ~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (570)
T 3b43_A           10 EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSAPAYKMQFKN-----NVASLVINKVDHSDVGEYTCKAENS   83 (570)
T ss_dssp             ECCCCEEECTTSCEEEEEEEESSSSCEEEEECS-SSBCCCCSSEEEECCT-----TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EECCceEEcCCCEEEEEEEEccCCCCEEEEEEC-CEEccCCCCEEEEEEC-----CEEEEEEccCChhhCEEEEEEEEeC
Confidence            355667788999999999999999999999999 7777766666554332     1247999999999999999999999


Q ss_pred             CCceEEEEEEEEec
Q psy16261         84 LGGSEGVIKVYNIG   97 (158)
Q Consensus        84 ~g~~~~~~~l~v~~   97 (158)
                      .|.......|.+..
T Consensus        84 ~g~~~~~~~l~v~~   97 (570)
T 3b43_A           84 VGAVASSAVLVIKE   97 (570)
T ss_dssp             TEEEEEEEEEEECC
T ss_pred             CceEEEEEEEEECC
Confidence            99877766666543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.61  E-value=9.1e-15  Score=99.10  Aligned_cols=88  Identities=19%  Similarity=0.326  Sum_probs=69.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ..++..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....  ++.+....     ..+.|.|.+++..|+|.|+|.+
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            9 TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTLPGVQISFSD-----GRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEES-SSBCCTTTSTTCEEEEET-----TEEEEEESSCCGGGCEEEEEEE
T ss_pred             EccCCceEEECCCEEEEEEEEEecCCCEEEEEEC-CEEcccccCCceEEEeCC-----CEEEEEECCCCcccCEEEEEEE
Confidence            4456677899999999999999999999999999 77665442  34433322     1247999999999999999999


Q ss_pred             EcCCCceEEEEEEEEe
Q psy16261         81 KNTLGGSEGVIKVYNI   96 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~   96 (158)
                      .|..|.......|.|.
T Consensus        83 ~n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           83 TNGSGQATSTAELLVK   98 (194)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EcCCceEeEEEEEEEc
Confidence            9999887777666665

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.61  E-value=1.5e-14  Score=107.90  Aligned_cols=88  Identities=23%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeeec-----CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIHE-----GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++ +..+..     ..++.+....     ..+.|.|.+++.+|+|.|+|.
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~   81 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH-----GSSSLHIKDVKLSDSGRYDCE   81 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECS-----SEEEEEEESCCGGGCEEEEEE
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccC-----CcceEEEcccChhhCEEEEEE
Confidence            44556788999999999999999999999982 444433     3556554321     134799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEecc
Q psy16261         80 AKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v~~~   98 (158)
                      |.|..|..+..+.|.|...
T Consensus        82 a~n~~g~~~~~~~l~V~~~  100 (389)
T 2jll_A           82 AASRIGGHQKSMYLDIEYA  100 (389)
T ss_dssp             EECSSCEEEEEEEEEEEEE
T ss_pred             EEeCCCCcceEEEEEEEeC
Confidence            9999999888888777654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.60  E-value=2.5e-15  Score=112.65  Aligned_cols=127  Identities=17%  Similarity=0.250  Sum_probs=90.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++++..+....+. ....        +.|.|.+++.+|+|.|+|.|.|..|
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~G  282 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR-HKSN--------GILEIPNFQQEDAGSYECVAENSRG  282 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEE-CTTS--------CEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccccee-cCCC--------cEEEECCCChhhCEEEEEEEEcCCC
Confidence            345567889999999999999999999999646555433221 1111        2699999999999999999999999


Q ss_pred             ceEEEEEEEEeccCCC------------------------CCc---------cc----------chhhhhhhcccccccc
Q psy16261         86 GSEGVIKVYNIGYFGS------------------------DTQ---------YV----------TDEEMQRTNQIARSKW  122 (158)
Q Consensus        86 ~~~~~~~l~v~~~~~~------------------------~~~---------~~----------~~~~~~~~~~~~~~~~  122 (158)
                      .......|.|...|..                        +..         .+          ..+.+......|.|.|
T Consensus       283 ~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y  362 (384)
T 3kld_A          283 KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMY  362 (384)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEE
T ss_pred             eEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEE
Confidence            8877766665543210                        000         00          0122333344567777


Q ss_pred             cCcccceEeeeccCCceEEEEccccC
Q psy16261        123 GSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       123 g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                             .|.|.|..|....++.|.|
T Consensus       363 -------~C~A~N~~G~~~~~a~L~V  381 (384)
T 3kld_A          363 -------QCVAENKHGVIFSSAELSV  381 (384)
T ss_dssp             -------EEEEEETTEEEEEEEEEEE
T ss_pred             -------EEEEEeCCceEEeceEEEE
Confidence                   9999999999999999885

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1e-14  Score=89.95  Aligned_cols=90  Identities=18%  Similarity=0.264  Sum_probs=71.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..++..+.+.+|+.+.|.|.+.+ |.+.+.|+++ +..+....++.+...+     ..+.|.|.++..+|+|.|+|.+.
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~-g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~   83 (103)
T 2edf_A           11 IIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKD-RKAIRKSQKYDVVCEG-----TMAMLVIRGASLKDAGEYTCEVE   83 (103)
T ss_dssp             EEECCCCEEECTTSCEEECCEESS-SSCCCCEEES-SCBCCCSSSEEEEEET-----TEEEEEESSCCTTTCSEEEEECS
T ss_pred             EEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEEC-CEEccCCCCEEEEECC-----CEEEEEECCCCcccCEEEEEEEc
Confidence            345566778999999999999997 8889999999 8877777777766544     13479999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |    ....+.|.|...+..+
T Consensus        84 n----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           84 A----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             S----CEEEEEEEECCCSSSS
T ss_pred             c----CCcEEEEEEeCCCCCC
Confidence            9    3667777777765443

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.60  E-value=4e-15  Score=91.16  Aligned_cols=82  Identities=22%  Similarity=0.416  Sum_probs=66.0

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCe---EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSR---YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+   +.....   .    +.|.|.+++.+|+|.|+|.|.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~---~----~~L~i~~v~~~D~G~Y~C~a~N   86 (100)
T 3caf_A           15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYKVRNQ---H----WSLIMESVVPSDKGNYTCVVEN   86 (100)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCCEEEEEET-TEECCGGGSTTCCEEEGG---G----TEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccEEEecCCCEEEEEEEccccCCCEEEEEEC-CEEcccccccccEEEecC---e----EEEEEccCCcCCCEEEEEEEEe
Confidence            3567788999999999999999999999999 776654432   222211   1    2699999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy16261         83 TLGGSEGVIKVYN   95 (158)
Q Consensus        83 ~~g~~~~~~~l~v   95 (158)
                      ..|.....+.|.|
T Consensus        87 ~~g~~~~~~~l~V   99 (100)
T 3caf_A           87 EYGSINHTYHLDV   99 (100)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999888887766

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.59  E-value=1.1e-14  Score=88.52  Aligned_cols=83  Identities=19%  Similarity=0.304  Sum_probs=69.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ++....+.+|+.+.|.|.+.+  .|.+.|+++ +..+....++.... .        .|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~-g~~~~~~~~~~~~~-~--------~L~i~~~~~~D~G~Y~C~a~n~~   74 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKD-GVHLGPNNRTVLIG-E--------YLQIKGATPRDSGLYACTAARTV   74 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEET-TEEECCCSSEEEET-T--------EEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEEC-CEECCCCceEEEeC-C--------EEEECcCCcccCEEEEEEEccCC
Confidence            567778999999999999987  579999999 88887766665542 2        69999999999999999999999


Q ss_pred             CceEEEEEEEEeccC
Q psy16261         85 GGSEGVIKVYNIGYF   99 (158)
Q Consensus        85 g~~~~~~~l~v~~~~   99 (158)
                      |.....+.|.|....
T Consensus        75 g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           75 DSETWIFMVNVTDAA   89 (95)
T ss_dssp             CEEEEEEEEEECCC-
T ss_pred             CcEEEEEEEEEeCCc
Confidence            988888888887654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=87.97  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...|....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+      .        .|.|.+++.+|+|.|+|.|.
T Consensus         6 i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~------~--------~L~i~~v~~~d~G~Y~C~a~   70 (91)
T 3bfo_A            6 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-ELPLTHETK------K--------LYMVPYVDLEHQGTYWCHVY   70 (91)
T ss_dssp             EEECCCCEEECTTSCEEEECEEECSSCCEEEEEET-TEECTTCCS------S--------EEEESSCCGGGCEEEEEEEE
T ss_pred             EEECCCccEecCCCcEEEEEEeccCCCCEEEEEcC-CeeCCcCCC------C--------eEEECCCCHHhCEEEEEEEE
Confidence            45567777899999999999999999999999999 776644321      1        69999999999999999999


Q ss_pred             cCCCceE-EEEEEEEec
Q psy16261         82 NTLGGSE-GVIKVYNIG   97 (158)
Q Consensus        82 n~~g~~~-~~~~l~v~~   97 (158)
                      |..|... ..+.|.|.+
T Consensus        71 n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           71 NDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             CSSCEEECCCEEEEEC-
T ss_pred             cCCCCEEeeeEEEEEeh
Confidence            9999754 456666643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=102.09  Aligned_cols=84  Identities=20%  Similarity=0.402  Sum_probs=66.9

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeE---EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRY---HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....++   .....   .    .+|.|.+++..|+|.|+|.+.|
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~---~----~~L~i~~v~~~d~G~Y~C~~~~   93 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIGGIKLRHQ---Q----WSLVMESVVPSDRGNYTCVVEN   93 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEET-TEECCGGGSTTCCEEEGG---G----TEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEEC-CcccCCCCcccceeeecc---c----eEEEEEeCCcccCEEEEEEEee
Confidence            3467789999999999999999999999999 7766543222   22111   1    2699999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy16261         83 TLGGSEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~   97 (158)
                      ..|.....+.|.|..
T Consensus        94 ~~~~~~~~~~l~V~~  108 (241)
T 3grw_A           94 KFGSIRQTYTLDVLE  108 (241)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             cCCceEEEEEEEEec
Confidence            998888777777765

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.59  E-value=5.5e-14  Score=100.64  Aligned_cols=86  Identities=20%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+++ +..+....++......     ..+.|.|.+++.+|.|.|+|.+.|..|..
T Consensus       108 ~~~v~~g~~~~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  181 (284)
T 2rik_A          108 SRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHNAAGSA  181 (284)
T ss_dssp             EEEEETTCCEEEEEEEESSSCCEEEEEET-TEECCCSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             ceEecCCceEEEEEEEeeeCCCEEEEEEC-CEECcCCCcEEEEEcC-----CEEEEEECCCCcccCEEEEEEEEcCCCce
Confidence            34578999999999999999999999999 8777666655544332     12479999999999999999999999988


Q ss_pred             EEEEEEEEeccC
Q psy16261         88 EGVIKVYNIGYF   99 (158)
Q Consensus        88 ~~~~~l~v~~~~   99 (158)
                      ...+.|.|...+
T Consensus       182 ~~~~~l~V~~~p  193 (284)
T 2rik_A          182 SSSTSLKVKEPP  193 (284)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEEecCC
Confidence            888888877654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=1.5e-14  Score=89.21  Aligned_cols=87  Identities=21%  Similarity=0.223  Sum_probs=68.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...+..+.+.+|+.+.|.|.+.+ |.+.+.|+|+ +..+....  ++.+...+     ..+.|.|.+++.+|+|.|+|.|
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~-g~~l~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A           11 TKQLEDTTAYCGERVELECEVSE-DDANVKWFKN-GEEIIPGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             SBCCCCEEEETTEEEEEEEECSS-SSCCCEEEET-TEECCCSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEEEE
T ss_pred             eccCCCEEEECCCCEEEEEEecC-CCCeEEEEEC-CEECCCCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEEEE
Confidence            34566678899999999999987 7799999999 88777665  56666543     1247999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccCC
Q psy16261         81 KNTLGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~~~  100 (158)
                      .|    ......|.|...+.
T Consensus        84 ~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           84 TG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             TT----EEEEEEEEEECCCS
T ss_pred             CC----CcEEEEEEEeCCCC
Confidence            88    46667777777654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.58  E-value=1.6e-14  Score=99.07  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=92.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC----CCeeEEEcCC---------------Ceeeec-----CCeEEEEEeecccc
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP----KPITFWTHEN---------------GSLIHE-----GSRYHMWTEKFSSY   57 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~---------------~~~~~~-----~~~~~~~~~~~~~~   57 (158)
                      |..++..+.+.+|+.+.|.|.+.+.+    .+.+.|++.+               +..+..     ..|+.+....  ..
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~   80 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND--VK   80 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSC--GG
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccC--cc
Confidence            45567778899999999999999887    4699998841               222211     2333332200  00


Q ss_pred             eEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccCCCCCc----------------cc---------------
Q psy16261         58 KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQ----------------YV---------------  106 (158)
Q Consensus        58 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~----------------~~---------------  106 (158)
                      ...++|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+..+..                .+               
T Consensus        81 ~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~  160 (214)
T 3jz7_A           81 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS  160 (214)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred             CCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence            01236999999999999999999999888888888887765422110                00               


Q ss_pred             ---------------chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        107 ---------------TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       107 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                                     ..+.+......+.|.|       .|.+.|..|....+..|.|..|+
T Consensus       161 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y-------~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          161 DSQTMPTPWLAEMTSPVISVKNASSEYSGTY-------SCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             TTCCCCGGGGGGTTSSEEEECSCCGGGCEEE-------EEEEECSSCEEEEEEEECCBCCC
T ss_pred             CCCccCccceeccCCCEEEEecCCHHHCEEE-------EEEEEcCCCcEEEEEEEEEeCCC
Confidence                           0011112223344555       89999999999999999987654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.58  E-value=3.9e-14  Score=90.35  Aligned_cols=94  Identities=19%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +..+..+.+.+|+++.|.|.+.+.|.+.+.|++.++..+.       ...++.+.....    ...+|.|.+++.+|+|.
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~   80 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA----NQLSITVPNVTLQDEGV   80 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEET----TEEEEEESSCCGGGCEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCC----CEEEEEECCCChHHCEE
Confidence            3456778899999999999999999999999987444332       345555543211    12479999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccCCC
Q psy16261         76 YKCNAKNTLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        76 Y~C~a~n~~g~~~~~~~l~v~~~~~~  101 (158)
                      |.|.+.|. |.....+.|.|...|..
T Consensus        81 Y~C~a~n~-g~~~~~~~l~V~~~P~~  105 (124)
T 3rbg_A           81 YKCLHYSD-SVSTKEVKVIVLATMKG  105 (124)
T ss_dssp             EEEEEESS-SEEEEEEEEEEECC---
T ss_pred             EEEEEEcC-CCCcEEEEEEEEeCCCC
Confidence            99999999 88888899988876643

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.58  E-value=5.7e-14  Score=86.86  Aligned_cols=89  Identities=15%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-------CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+.+.|++++...+..       ..++.+.....    ...+|.|.+++.+|+|.|+
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~D~G~Y~   87 (108)
T 3m45_A           12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISVSDVSLSDEGQYT   87 (108)
T ss_dssp             ECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS----SEEEEEECSCCGGGCEEEE
T ss_pred             cCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC----CcEEEEECCCChhHCeEEE
Confidence            456678999999999999999999999999983323322       23555543221    1347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEecc
Q psy16261         78 CNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      |.+.| .|.....+.|.|...
T Consensus        88 C~~~n-~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           88 CSLFT-MPVKTSKAYLTVLGV  107 (108)
T ss_dssp             EEECS-SSCEEEEEEEEEECC
T ss_pred             EEEEc-CCCcEEEEEEEEEcC
Confidence            99999 888888888888764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.58  E-value=1.2e-13  Score=95.27  Aligned_cols=91  Identities=15%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCC-CCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v-~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.+.+.|+++ +..+............ .   ..+.|.|.++ +.+|+|.|+|.+
T Consensus         9 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~-~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            9 FTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-GKKVSNQRFEVIEFDD-G---SGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCTTEEEEEEGG-G---TEEEEEECSCCTTTTCEEEEEEE
T ss_pred             EEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEEC-CcCCCCCceeEEEEcC-C---CceEEEEeccCCCCCCeEEEEEE
Confidence            34556677899999999999999999999999999 7776554332222211 1   1246999999 599999999999


Q ss_pred             EcCCCceEEEEEEEEec
Q psy16261         81 KNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~   97 (158)
                      .|..|.....+.|.|..
T Consensus        84 ~n~~g~~~~~~~l~V~~  100 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLR  100 (212)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCcEEEEEEEEEec
Confidence            99999887777777754

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=91.07  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             ecCceEEEecCCCEEEEeEEeec---CCCeeEEEcCCCe-eeec--CCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESY---PKPITFWTHENGS-LIHE--GSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      ..|+.+.+.+|+.+.|.|.+.|.   |.|.+.|+|+ .. .+..  +.++.+..... ......++|.|.++...|+|.|
T Consensus        17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kg-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (118)
T 2edn_A           17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKG-KWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY   95 (118)
T ss_dssp             BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEET-TTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCE
T ss_pred             ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeC-CEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEE
Confidence            34677889999999999999885   7899999998 42 2221  23444432210 1111245899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEecc
Q psy16261         77 KCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      .|.+.|..|..++.+.|.|..+
T Consensus        96 ~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           96 RLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEECSSCEEEEEECCEEECC
T ss_pred             EEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999988763

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=89.20  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+.+|+.+.|.|.+.+.|.+ +.|+++ +..+....++.+...+     ..+.|.|.+++.+|+|.|+|.+.|..+   
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~-g~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~~---   89 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKD-GQKVEESELLVVKMDG-----RKHRLILPEAKVQDSGEFECRTEGVSA---   89 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEET-TEECCCBTTBEEEEET-----TEEEEEESSCCTTTCEEEEEECSSCCC---
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeC-CEECCCCCCEEEEeCC-----CEEEEEECCCChhhCEEEEEEECCceE---
Confidence            678999999999999999999 999999 8877766666665433     124799999999999999999999744   


Q ss_pred             EEEEEEEeccCC
Q psy16261         89 GVIKVYNIGYFG  100 (158)
Q Consensus        89 ~~~~l~v~~~~~  100 (158)
                       .+.|.|...+.
T Consensus        90 -~~~l~V~~~P~  100 (104)
T 2e6p_A           90 -FFGVTVQDPSG  100 (104)
T ss_dssp             -CEEEEEECCCC
T ss_pred             -EEEEEEcCCCC
Confidence             45566665543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.57  E-value=5e-14  Score=98.12  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeee----------ec------CCeEEEEEeecccceEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLI----------HE------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .|.+.+.+.+|+++.|.|.+.+.+.+   .+.|++++....          ..      ..|+.....  .......+|.
T Consensus         9 ~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~--~~~~~~~~L~   86 (226)
T 4f80_A            9 GPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD--GITAGKAALR   86 (226)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECT--TGGGTEEEEE
T ss_pred             CCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecc--cccCCeEEEE
Confidence            45667889999999999999887655   689998732211          00      012222211  1111235799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      |.+++.+|+|.|+|.|.|..|.....+.+.+...
T Consensus        87 I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~  120 (226)
T 4f80_A           87 IHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL  120 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             EeeCchHHCeeEEEEEECCCcEEEEEEEEeeccc
Confidence            9999999999999999999887777666654443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=89.07  Aligned_cols=87  Identities=13%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+++.+.+.+|+.+.|.|.+.+.|.+ .+.|+|+ +..+..+.++.+...+     ..+.|.|.+++.+|+|.|+|.|.|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~-g~~i~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVG-GKTVGSSSRFQATRQG-----RKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSS-SSBCSBCSSCEEEEET-----TEEEEEECSCCTTTCSCEEEEETT
T ss_pred             ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEEC-CEECCCCCCEEEEEcC-----CEEEEEECCCCHHHCEEEEEEECC
Confidence            35567789999999999999998754 8999999 8888777777766544     124799999999999999998854


Q ss_pred             CCCceEEEEEEEEeccCC
Q psy16261         83 TLGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~  100 (158)
                          ......|.|...+.
T Consensus        87 ----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           87 ----LTSKASLIVRERSG  100 (104)
T ss_dssp             ----EEEEECEEEECCCS
T ss_pred             ----eeEEEEEEEeCCCc
Confidence                56677888877653

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.57  E-value=5.5e-14  Score=85.47  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+ +.|.+.+.|+++ +..+..+.++.+...+     ....|.|.+++.+|+|.|+|.+   
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a---   82 (95)
T 2k1m_A           13 KKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRG-GSDISASNKYGLATEG-----TRHTLTVREVGPADQGSYAVIA---   82 (95)
T ss_dssp             BCCCCEEEETTSCEEEEEEC-SSSSCCCEEECS-SSEECSSTTCEEEEET-----TEEEEEESSCCTTCCSEEEEEE---
T ss_pred             eCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEEC-CEECCCCCcEEEEEcC-----CEEEEEEcCCCcccCEEEEEEE---
Confidence            45667789999999999999 888999999999 8877777777665543     1247999999999999999999   


Q ss_pred             CCceEEEEEEEEe
Q psy16261         84 LGGSEGVIKVYNI   96 (158)
Q Consensus        84 ~g~~~~~~~l~v~   96 (158)
                       |.....+.|.|.
T Consensus        83 -g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 -GSSKVKFDLKVI   94 (95)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEe
Confidence             556666777664

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.57  E-value=1.6e-14  Score=97.54  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             ceEEEecCCCEEEEeEEee--cCCCeeEEEcCCCeeee----------cCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          7 QLIGARLAAPLTLDCHVES--YPKPITFWTHENGSLIH----------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g--~p~p~i~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      ..+.+.+|+.+.|.|...+  .+.+.+.|+|+ +..+.          ...|+.+...+        +|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~-~~~i~~~~~~~~~~~~~~r~~~~~~g--------sL~I~~v~~~D~G   74 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERG-STLVAEFKRKMKPFLKSGAFEILANG--------DLKIKNLTRDDSG   74 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEET-TEEEEEEETTSCCEESSTTEEECTTS--------CEEESSCCGGGCE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeC-CceeEEEcCCCeecCCCCeEEECCCC--------cEEEcccccccCE
Confidence            3467889999999995434  56778999999 64432          33555554333        6999999999999


Q ss_pred             EEEEEEEcCCCce--EEEEEEEEeccCCCCCccc----------------chhhh---------------hhhccccccc
Q psy16261         75 TYKCNAKNTLGGS--EGVIKVYNIGYFGSDTQYV----------------TDEEM---------------QRTNQIARSK  121 (158)
Q Consensus        75 ~Y~C~a~n~~g~~--~~~~~l~v~~~~~~~~~~~----------------~~~~~---------------~~~~~~~~~~  121 (158)
                      .|+|.+.|..|..  ...+.|.|...+..+....                ..-.|               ......+.|.
T Consensus        75 ~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~  154 (176)
T 1hng_A           75 TYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAP  154 (176)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSC
T ss_pred             EEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeE
Confidence            9999999999986  6667777765432211100                00011               1222345566


Q ss_pred             ccCcccceEeeeccCCceEEEEccccCC
Q psy16261        122 WGSERTNQIARSKWGSGYRYTSGPIRLP  149 (158)
Q Consensus       122 ~g~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (158)
                      |       .|.+.|..|.......+.++
T Consensus       155 Y-------~C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          155 F-------KCKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             E-------EEEEEETTEEEEEEECCCCC
T ss_pred             E-------EEEEEecCCCceecccccCC
Confidence            6       99999999999999888775

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.56  E-value=2.2e-14  Score=107.32  Aligned_cols=131  Identities=17%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+... .++......        .|.|.++..+|.|.|+|.|.|..
T Consensus       228 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~a~n~~  298 (403)
T 3laf_A          228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRG-EEVIQLRSKKYSLLGGS--------NLLISNVTDDDSGTYTCVVTYKN  298 (403)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEET-TEECCCSSSSEEEETTT--------EEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCceEecCCCcEEEEEEcCCCCCCeEEEEEC-CeeccCCCceEEECCcc--------EEEEeCCCHHHCEEEEEEEEcCC
Confidence            4445678999999999999999999999999 7666543 344443333        69999999999999999999999


Q ss_pred             CceEEEEEEEEeccCCC------------------------CCc---------cc-----------chhhhhhhcccccc
Q psy16261         85 GGSEGVIKVYNIGYFGS------------------------DTQ---------YV-----------TDEEMQRTNQIARS  120 (158)
Q Consensus        85 g~~~~~~~l~v~~~~~~------------------------~~~---------~~-----------~~~~~~~~~~~~~~  120 (158)
                      |.....+.|.|...+..                        +..         .+           ..+.+......+.|
T Consensus       299 g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G  378 (403)
T 3laf_A          299 ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEG  378 (403)
T ss_dssp             EEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCE
T ss_pred             CceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCE
Confidence            98888777776543200                        000         00           01122223344556


Q ss_pred             cccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        121 KWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       121 ~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      .|       .|.+.|..|....+..|.|..|+
T Consensus       379 ~Y-------~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          379 FY-------QCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             EE-------EEEEEETTEEEEEEEEEECCCC-
T ss_pred             EE-------EEEEEcCCceEEEEEEEEEeCCC
Confidence            66       99999999999999999998775

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.56  E-value=8.1e-14  Score=88.32  Aligned_cols=92  Identities=22%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCCCeeee-----cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHENGSLIH-----EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      ++..+.+.+|+.+.|.|.+.|.|  .+.+.|+++ +..+.     ...+......  ......+.|.|.+++.+|+|.|+
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~   90 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGS--EMKKFLSTLTIDGVTRSDQGLYT   90 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECS-CTTCCHHHHBCCSCCEEEET--TEEEEEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECC-CcccCCceeeeeccccccCC--ceeeEEEEEEECCCCcccCEEEE
Confidence            44556789999999999999944  568899998 54321     1111111100  01112347999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccC
Q psy16261         78 CNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      |.|.|..|.....+.|.|...+
T Consensus        91 C~a~n~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           91 CAASSGLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEE
T ss_pred             EEEccCCCceEEEEEEEEeccC
Confidence            9999999999988998887764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.56  E-value=1.4e-14  Score=97.96  Aligned_cols=86  Identities=34%  Similarity=0.499  Sum_probs=67.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..++..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.. ..++.+...+       ..|.|.+++.+|.|.|+|.+.
T Consensus        11 ~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A           11 TTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENG-------QLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             SSCCCEEEEETTSCEEEECCEEEESCCEEEEEET-TEECCTTCTTEEEEGGG-------TEEEESSCCGGGCEEEEEEEE
T ss_pred             ecCccceeeeCCCcEEEEeeCCCCCCCeEEEEEC-CEEccccCccEEEcCCc-------cEEEEcCCCcccCeEEEEEEE
Confidence            3456677899999999999999999999999999 776654 4566554333       259999999999999999999


Q ss_pred             cCCCce-EEEEEEEEe
Q psy16261         82 NTLGGS-EGVIKVYNI   96 (158)
Q Consensus        82 n~~g~~-~~~~~l~v~   96 (158)
                      |..|.. .....|.|.
T Consensus        83 ~~~~~~~~~~~~l~v~   98 (192)
T 2iep_A           83 NGVGGAVESCGALQVK   98 (192)
T ss_dssp             CSSSCCEEEEEEEEEE
T ss_pred             cCCCceeEeEEEEEEE
Confidence            988874 444444443

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=2.9e-14  Score=88.37  Aligned_cols=86  Identities=14%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..++..+.+.+|+.+.|.|.+.+.|.+ +.|+++ +..+....++.+...+     ..+.|.|.++..+|+|.|+|.|.
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~-g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A           11 VLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKN-GVEVRPSKRITISHVG-----RFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             EEECCCCEEEESSCCEECCCEESCSSCE-EEEEES-SCBCCCCSSCEEEEET-----TEEEEEESSCCTTTCSCEEEEEE
T ss_pred             EecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcC-CEECcCCCCEEEEEeC-----CEEEEEECCCCcCCCEEEEEEEc
Confidence            3456677889999999999999998888 999999 8877777777666443     12479999999999999999999


Q ss_pred             cCCCceEEEEEEEEe
Q psy16261         82 NTLGGSEGVIKVYNI   96 (158)
Q Consensus        82 n~~g~~~~~~~l~v~   96 (158)
                      |..  ......|.|.
T Consensus        84 n~~--~~~~~~l~V~   96 (106)
T 2dlt_A           84 GYA--LSLSAKLNFL   96 (106)
T ss_dssp             TSC--CCCCBCEEEE
T ss_pred             cCC--ceEEEEEEEE
Confidence            983  3344444444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=3.1e-14  Score=86.28  Aligned_cols=68  Identities=22%  Similarity=0.327  Sum_probs=56.7

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +.+.+|+.+.|.|.+.+ |.|.+.|+|+ +..+..+.++.+...+     ..+.|.|.++..+|+|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~-g~~i~~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKD-GQEVEESDFVVLENEG-----PHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEET-TSCCCCCSSCEEEEET-----TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEEC-CEEeeeeeeeeEEecC-----CeEEEEeCCCChhhcEEEEEEEcce
Confidence            34568999999999865 8889999999 8888888888776654     1247999999999999999998764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.55  E-value=1.3e-13  Score=94.55  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....+.    .+.|.|.+++.+|.|.|+|.|.|..
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~  197 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALAQTDHCNLKFEAGR----TAYFTINGVSTADSGKYGLVVKNKY  197 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEETTT----EEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCceEEEEEC-CeECccCCCEEEEEcCCC----EEEEEEcCcchHHCeEEEEEEEcCC
Confidence            34556788999999999999999999999999 888877777766654211    2479999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      |.....+.|.|..
T Consensus       198 g~~~~~~~l~V~~  210 (212)
T 2r15_A          198 GSETSDFTVSVFI  210 (212)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEc
Confidence            9998888888764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.55  E-value=9.3e-14  Score=84.79  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=64.1

Q ss_pred             cCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+..+.+.+|+.+.|.|.+. +.|.+.+.|+++ +.......  .....+        .|.|.+++.+|+|.|+|.+.|.
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~-~~~~~~~~--~~~~~~--------~L~i~~v~~~D~G~Y~C~a~n~   84 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRL-HNGKLPSR--AMDFNG--------ILTIRNVQPSDAGTYVCTGSNM   84 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEG-GGBCCCTT--EEEETT--------EEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeC-CCCCCCce--eecCCC--------EEEEeCCChhhCEEEEEEecCC
Confidence            34666789999999999998 689999999997 43322222  122223        7999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy16261         84 LGGSEGVIKVYNI   96 (158)
Q Consensus        84 ~g~~~~~~~l~v~   96 (158)
                      .|.....+.|.|.
T Consensus        85 ~g~~~~~~~l~V~   97 (98)
T 1gl4_B           85 FAMDQGTATLHVQ   97 (98)
T ss_dssp             SCEEEEEEEEEEC
T ss_pred             CCccccEEEEEEe
Confidence            9998888888764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.55  E-value=1.6e-13  Score=93.29  Aligned_cols=95  Identities=20%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecC--CeEEEEEeec--ccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEG--SRYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      +...+..+.+.+|+.+.|.|.+. +.|.+.+.|+++ +..+...  .++++....+  ..+...+.|.|.+++..|+|.|
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   83 (195)
T 2c5d_C            5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY   83 (195)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEET-TEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEE
T ss_pred             eccChhheEEecCCcEEEecccccCCCCcEEEEEEC-CEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEE
Confidence            45567788899999999999999 999999999999 8777655  2344432221  1122246899999999999999


Q ss_pred             EEEEEcCCCceEE-EEEEEEec
Q psy16261         77 KCNAKNTLGGSEG-VIKVYNIG   97 (158)
Q Consensus        77 ~C~a~n~~g~~~~-~~~l~v~~   97 (158)
                      +|.+.|..|.... .+.|.|..
T Consensus        84 ~C~~~~~~~~~~~~~~~l~V~~  105 (195)
T 2c5d_C           84 QCLVFLGHQTFVSQPGYVGLEG  105 (195)
T ss_dssp             EEEEEETTEEEECCCEEEEECC
T ss_pred             EEEEEeCCCceecccEEEEEec
Confidence            9999998776533 25555544

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=8.5e-14  Score=87.90  Aligned_cols=83  Identities=20%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             CCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261         15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY   94 (158)
Q Consensus        15 ~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   94 (158)
                      +...|.|.+.|.|.|.+.|+|+ +..+....+........ .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~   98 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   98 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEET-TEECCCSSSEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             cceEEEEEeeeeCCCeEEEEEC-CEECCCCCceeEEEecc-CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEE
Confidence            5578999999999999999999 88877666554443221 112245799999999999999999999999999888887


Q ss_pred             EeccC
Q psy16261         95 NIGYF   99 (158)
Q Consensus        95 v~~~~   99 (158)
                      +...|
T Consensus        99 v~~~P  103 (118)
T 1wwc_A           99 FLKEP  103 (118)
T ss_dssp             CSCCC
T ss_pred             EccCC
Confidence            76654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.54  E-value=2e-13  Score=92.31  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEc-CCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTH-ENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      +...+..+.+.+|+.+.|.|.+.+.| .+.+.|++ + +..+. ...++.+.....    ..+.|.|.+++.+|+|.|+|
T Consensus         5 v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~-g~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-GEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIYKC   79 (191)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTT-SCEECCBSSSEEEEEEET----TEEEEEECSCCGGGCEEEEE
T ss_pred             EEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCC-CccccCCCCeEEEEECCC----CceEEEEccCCcccCEEEEE
Confidence            45667778899999999999999987 78999999 6 76665 445666554321    12479999999999999999


Q ss_pred             EEEcCCC-ceEEEEEEEEec
Q psy16261         79 NAKNTLG-GSEGVIKVYNIG   97 (158)
Q Consensus        79 ~a~n~~g-~~~~~~~l~v~~   97 (158)
                      .+.|..+ .....+.|.+..
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~   99 (191)
T 1epf_A           80 VVTAEDGTQSEATVNVKIFQ   99 (191)
T ss_dssp             EEEETTTEEEEEEEEEEEEC
T ss_pred             EEEcCCCcceEEEEEEEeec
Confidence            9999984 445666666654

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1e-13  Score=85.32  Aligned_cols=88  Identities=17%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..++.+.+.+|+.+.|.|. .+.|.+.+.|+++ +..+....++.+...+     ..+.|.|.+++.+|+|.|+|.    
T Consensus        13 ~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2dku_A           13 EELTNLQVEEKGTAVFTCK-TEHPAATVTWRKG-LLELRASGKHQPSQEG-----LTLRLTISALEKADSDTYTCD----   81 (103)
T ss_dssp             SCCCCEEEETTSEEEEEEE-CSSCCSCCEEEES-SCBCCSSSSEEEEEET-----TEEEEEEESCCTTTCSEEEEE----
T ss_pred             ecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeC-CEECCCCCeEEEEeCC-----CEEEEEECCCCcccCEEEEEE----
Confidence            4556778999999999999 5889999999999 8877777777766433     123699999999999999998    


Q ss_pred             CCceEEEEEEEEeccCCCC
Q psy16261         84 LGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~~~  102 (158)
                      .|.....+.|.|...+..+
T Consensus        82 ~g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           82 IGQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             CSSCBCCEEEEEECSCCCC
T ss_pred             eCCceEEEEEEEeCccCCC
Confidence            6667777888888776544

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.53  E-value=1.4e-13  Score=104.77  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=86.1

Q ss_pred             CceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecc-cceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFS-SYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +....+.+|+.+.|.|.+.| .|.|.+.|+++ +..+.....+.......+ .....+.|.|.+++.+|+|.|+|.|.|.
T Consensus       234 ~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             TTEEEEETTSCEEEEEEEEESSSCCCEEEEES-SSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCceEEeCCCeEEEEEEEEcCCCCcEEEEEEC-CEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            34567889999999999999 67799999999 666544332211111101 1222347999999999999999999998


Q ss_pred             CCceEEEEEEEEeccCCC--------------------------CCc---------ccc--------hhhh--hhhcccc
Q psy16261         84 LGGSEGVIKVYNIGYFGS--------------------------DTQ---------YVT--------DEEM--QRTNQIA  118 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~~--------------------------~~~---------~~~--------~~~~--~~~~~~~  118 (158)
                         ....+.|.|...+..                          |..         .+.        ...+  ......+
T Consensus       313 ---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D  389 (423)
T 3qs7_E          313 ---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ  389 (423)
T ss_dssp             ---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTC
T ss_pred             ---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEeccccc
Confidence               555666666543210                          000         000        0000  1122345


Q ss_pred             cccccCcccceEeeeccCCceEEEEccccCCCCCCCC
Q psy16261        119 RSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDP  155 (158)
Q Consensus       119 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (158)
                      .|.|       +|.|.|..|....+..|.+.++|++|
T Consensus       390 ~G~Y-------tC~A~N~~G~~~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          390 PGEY-------IFHAENDDAQFTKMFTLNIRSGTKHH  419 (423)
T ss_dssp             CSCE-------EEEEEETTEEEEEEEEEC--------
T ss_pred             CEEE-------EEEEEcCCceEEEEEEEEEecCCccc
Confidence            5666       99999999999999999988877765

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-13  Score=84.84  Aligned_cols=85  Identities=18%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+.+.  |.+.|+++ +..+..+.++.+...+     ..+.|.|.++..+|+|.|+|.|   
T Consensus        24 ~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           24 EGLRNEEATEGATAVLRCELSKM--APVEWWKG-HETLRDGDRHSLRQDG-----ARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             ECCCCCEECTTSCEEEEEEESSC--CCCEEEES-SSBCCCSSSEEEEEET-----TEEEEEECSCCSTTCEEEEEEE---
T ss_pred             ccCCceEEeCCCeEEEEEEECCC--CcEEEEEC-CEECCCCCcEEEEECC-----CEEEEEECCCChhhCEEEEEEe---
Confidence            34556678899999999999775  78999999 8888777788776544     1347999999999999999999   


Q ss_pred             CCceEEEEEEEEeccCC
Q psy16261         84 LGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~  100 (158)
                       |.....+.|.|...+.
T Consensus        93 -~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           93 -GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             -TTEEEEEEEEECCCCC
T ss_pred             -CCCCEEEEEEEeCCCC
Confidence             6677888888877653

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.53  E-value=9.2e-14  Score=85.23  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+.+|+.+.|.|.+. .|.|.+.|+++ +..+....++.+...+     ....|.|.++..+|+|.|+|.|    |...
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~-g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a----g~~~   86 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKN-GQEIRPSTKYIFEHKG-----CQRILFINNCQMTDDSEYYVTA----GDEK   86 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEES-SCBCCCBTTEEEEEET-----TEEEEEEEEECTTTCCEEEEEE----TTEE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEEC-CEECCCCCCEEEEecC-----CEEEEEEcCCCcCcCEEEEEEE----CCce
Confidence            5688999999999998 79999999999 8777766677766443     1236999999999999999999    6677


Q ss_pred             EEEEEEEeccC
Q psy16261         89 GVIKVYNIGYF   99 (158)
Q Consensus        89 ~~~~l~v~~~~   99 (158)
                      ..+.|.|...|
T Consensus        87 ~~~~l~V~~~P   97 (100)
T 2yuv_A           87 CSTELFVRSGP   97 (100)
T ss_dssp             EEEEEEECCSC
T ss_pred             EEEEEEEecCC
Confidence            78888887754

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.53  E-value=4.7e-15  Score=94.27  Aligned_cols=91  Identities=23%  Similarity=0.429  Sum_probs=70.7

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCC-eEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDF-GTYKCNAK   81 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~-G~Y~C~a~   81 (158)
                      +..+.+.+|+.+.|.|.+.|.|.|. +.|+++ +..+..  ..++.+.... ......+.|.|.+++.+|. |.|+|.|.
T Consensus        20 ~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~~G~Y~C~a~   97 (122)
T 2cry_A           20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENVLESGTSGRYTVETIS-TEEGVISTLTISNIVRADFQTIYNCTAW   97 (122)
T ss_dssp             ECCCCCCTTSCCCCCEEECCSSCCSEEEEESS-SCEECSEEETTEEEEEEE-ETTEEEEEEECTTCCHHHHHSCEEEEEE
T ss_pred             CCeEEEecCCCEEEEEEEeecCCCcEeEEEEC-CEEccCCCCCCEEEEEec-CCCceEEEEEEcCCChhhCCceEEEEEE
Confidence            3445577899999999999999997 999999 776654  3566553221 1112245799999999999 99999999


Q ss_pred             cCCCceEEEEEEEEecc
Q psy16261         82 NTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~   98 (158)
                      |.+|.....+.|.|...
T Consensus        98 N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           98 NSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             CSSCEEEEEECCCCSCS
T ss_pred             CCCCeEEEEEEEEECCC
Confidence            99999998888887754

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=89.09  Aligned_cols=85  Identities=13%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC----eEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS----RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      ..++..+.+.+|+.+.|.|.+.+.| +.+.|+++ +..+....    ++.+...+     ..+.|.|.++..+|+|.|+|
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~-g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A           12 VTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKN-GVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             EECCCCEEEESSCCCBCCEEESCSS-CCCEEEES-SCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCSBEEE
T ss_pred             EecCCceEEcCCCCEEEEEEEeCCC-CEEEEEEC-CEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCEEEEE
Confidence            3456667899999999999999988 99999999 77776554    55665443     13479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEecc
Q psy16261         79 NAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~~~   98 (158)
                      .|.|    ......|.|...
T Consensus        85 ~a~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           85 ITNG----GQCEAELIVEEK  100 (101)
T ss_dssp             ECSS----CEECCBEEEECC
T ss_pred             EEcC----CcEEEEEEEeCC
Confidence            9987    334445555543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.52  E-value=2.9e-14  Score=98.57  Aligned_cols=86  Identities=17%  Similarity=0.117  Sum_probs=62.7

Q ss_pred             ceEEEecCCCEEEEeE---EeecCCCeeEEEcCCCeeeec-----------------CCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCH---VESYPKPITFWTHENGSLIHE-----------------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~---~~g~p~p~i~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      +.+.+..|+.+.|.|.   +.+.|.+.+.|+|+ +.....                 ..++.+....     ....|.|.
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~   74 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKL-GPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-----NTFFLVVT   74 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEE-ETTTEEEEEEEEETTEEEECGGGBTTEEEEEET-----TEEEEEES
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEc-CCCcceEEEEecCCceEEeeccccceEEEEEcC-----CEEEEEEc
Confidence            3567889999999995   56789999999998 432110                 1122222222     12479999


Q ss_pred             CCCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         67 SLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      +++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        75 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p  106 (203)
T 4fa8_A           75 AANISHDGNYLCRMKLGETEVTKQEHLSVVKP  106 (203)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             cCCHHHCeEEEEEEEcCCCcEEEEEEEEecCC
Confidence            99999999999999999998888777776553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.52  E-value=3.5e-14  Score=98.30  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=65.6

Q ss_pred             EEEecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.|. |.|.+.|+|+ +..+..+.++....       ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~-g~~l~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  197 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGKD  197 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEET-TEEECCCCCCCCSS-------EEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEEC-CEECCCCCceEcCC-------CEEEEEECCCCcccCEEEEEEEEcCCCEE
Confidence            467899999999999999 9999999999 88776655442111       12469999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      .+.+.|.+
T Consensus       198 ~~~~~L~~  205 (207)
T 3rbs_A          198 KSRLKLVD  205 (207)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            88888754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.51  E-value=2.9e-14  Score=98.41  Aligned_cols=70  Identities=23%  Similarity=0.411  Sum_probs=56.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+....+.+|+.+.|.|.+.+.|.+. +.|+++ +..+....       .        .|.|.+++.+|+|.|+|.+
T Consensus        10 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~-g~~l~~~~-------~--------~L~i~~v~~~D~G~Y~C~a   73 (204)
T 3sgj_C           10 VFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHN-ESLISSQA-------S--------SYFIDAATVDDSGEYRCQT   73 (204)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEET-TEEESCCS-------S--------EEEESSCCGGGCEEEEEEE
T ss_pred             EEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEEC-CEEcccCc-------c--------EEEEecccccCCEEEEEEe
Confidence            44555556789999999999999998876 999999 77665432       2        6999999999999999999


Q ss_pred             EcCCCce
Q psy16261         81 KNTLGGS   87 (158)
Q Consensus        81 ~n~~g~~   87 (158)
                      .|...+.
T Consensus        74 ~n~~~s~   80 (204)
T 3sgj_C           74 QLSTLSD   80 (204)
T ss_dssp             TTSBCCC
T ss_pred             CCCcccc
Confidence            9854433

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.51  E-value=1.1e-13  Score=85.13  Aligned_cols=85  Identities=19%  Similarity=0.352  Sum_probs=68.5

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+.+.|.+ +.|+++ +..+..+.++.+...+     ..+.|.|.+++.+|+|.|+|.    
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2e7b_A           13 EALKDLEVLEGGAATLRCVLSSVAAP-VKWCYG-NNVLRPGDKYSLRQEG-----AMLELVVRNLRPQDSGRYSCS----   81 (103)
T ss_dssp             BCCCCEEEESSSCEEEEEECSSCCCS-CEEEES-SSBCCCSSSEEEEECS-----SEEEEEECSCCTTTCCCEEEE----
T ss_pred             ecCccEEEECCCcEEEEEEEeCCCCC-eEEEEC-CEECCCCCcEEEEEcC-----CEEEEEEccCCcccCEEEEEE----
Confidence            34566789999999999999999999 999999 7777767777776554     134699999999999999998    


Q ss_pred             CCceEEEEEEEEeccC
Q psy16261         84 LGGSEGVIKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~   99 (158)
                      .|.....+.|.|...+
T Consensus        82 ~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           82 FGDQTTSATLTVTALP   97 (103)
T ss_dssp             CSSCBCCBCEEEECCC
T ss_pred             ECCcEEEEEEEEEecc
Confidence            4556666777777654

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=2.8e-13  Score=83.90  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ++..+.+.+|+.+.|.|.+ +.|.+.+.|+++ +..+..+ .++.+...+ .    ...|.|.+++.+|+|.|+|.+.| 
T Consensus        22 ~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~-g~~l~~~~~~~~~~~~~-~----~~~L~I~~v~~~D~G~Y~C~a~~-   93 (104)
T 1pd6_A           22 LEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKN-GQEIQMSGSKYIFESIG-A----KRTLTISQCSLADDAAYQCVVGG-   93 (104)
T ss_dssp             CCSEEEEETTSCEEEEEEC-SSSSSCCEEEES-SSEECCCSSSSEEEEET-T----EEEEEECSCSSSSCEEEEEEETT-
T ss_pred             CCCcEEEecCCCEEEEEEE-cCCCCEEEEEEC-CEECCCCCCeEEEEecC-C----EEEEEECCCCcccCEEEEEEECC-
Confidence            4444778999999999999 789999999999 8777766 677665443 1    34799999999999999999944 


Q ss_pred             CCceEEEEEEEEe
Q psy16261         84 LGGSEGVIKVYNI   96 (158)
Q Consensus        84 ~g~~~~~~~l~v~   96 (158)
                         ......|.|.
T Consensus        94 ---~~~~~~l~V~  103 (104)
T 1pd6_A           94 ---EKCSTELFVK  103 (104)
T ss_dssp             ---EEECCEEEEE
T ss_pred             ---CcEEEEEEEe
Confidence               4444555553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.51  E-value=3.8e-13  Score=93.10  Aligned_cols=72  Identities=15%  Similarity=0.249  Sum_probs=58.5

Q ss_pred             ceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+.+|+.+.|.|.+.+ .|.|.+.|+++ +..+..+.++.+.....+   ...+|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kn-g~~l~~~~~~~~~~~~~~---g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEET-TEEECSSSSCEEEECTTT---CEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEEC-CEECccCCCEEEEEeCCC---CEEEEEECCCChhhCEEEEEEEEC
Confidence            3567889999999999964 79999999999 888877777666543211   134699999999999999999988

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=88.82  Aligned_cols=87  Identities=11%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..++.+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+..+.++.+....+..    +.|.|.++..+|+|.|+|.    
T Consensus        18 ~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~----   88 (115)
T 2cr6_A           18 EDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-KTPLHANELNEIDAQPGGY----HVLTLRQLALKDSGTIYFE----   88 (115)
T ss_dssp             ECCCEEEEETTSCEECCCEEESTTCCSCEEEES-SCEECCSSSCCBCCBTTTB----CCBEECSCCTTTCEEEEEE----
T ss_pred             ccCccEEEeCCCcEEEEEEEcCCCCCccEEEEC-CEECCCCCcEEEEEcCCCE----EEEEEcCCChhhCEEEEEE----
Confidence            355677899999999999999999999999999 8877766665544221111    2699999999999999999    


Q ss_pred             CCceEEEEEEEEeccC
Q psy16261         84 LGGSEGVIKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~   99 (158)
                      +|.....+.|.|...+
T Consensus        89 ~g~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           89 AGDQRASAALRVTEKP  104 (115)
T ss_dssp             ETTEECCEEEEEECCS
T ss_pred             ECCeeEEEEEEEECCC
Confidence            4566777888887765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.50  E-value=1.2e-12  Score=88.67  Aligned_cols=86  Identities=22%  Similarity=0.417  Sum_probs=69.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEc--CCCeeee---cCCeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTH--ENGSLIH---EGSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKC   78 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C   78 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++  + +..+.   ...++.+....     ..+.|.|.++. .+|.|.|+|
T Consensus        98 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-g~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C  171 (190)
T 2wv3_A           98 HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN-GVFEEISNSSGRFFIINKE-----NYTELNIVNLQITEDPGEYEC  171 (190)
T ss_dssp             ECSEEEEETTSCEEEEEEEECSSCCEEEEEEEET-TEEEECCCTTSCEEEEECS-----SEEEEEECSCCTTTSCEEEEE
T ss_pred             cCCcceeeCCCcEEEEEEeCccCCCceEEEEcCC-CceeeeecCCCeEEEecCC-----CeeEEEEEeccccCCCEEEEE
Confidence            3445568899999999999999999999999  5 66654   34566665433     12479999999 799999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy16261         79 NAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~   96 (158)
                      .|.|..|.....+.|.|.
T Consensus       172 ~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          172 NATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSSCEEEEEEEEEEE
T ss_pred             EEEecCCcceeEEEEEEE
Confidence            999999999888888775

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.50  E-value=2.3e-13  Score=98.57  Aligned_cols=92  Identities=20%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. .++.........   .+.|.|.++.. .|+|.|+|.+
T Consensus         9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~-g~~i~~-~~~~~~~~~~~~---~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            9 FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNS-QRFETIEFDESA---GAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEC--------C-TTEEEEEETTTT---EEEEEECSCCTTTTCSEEEEEE
T ss_pred             eeecCCceEecCCCeEEEEEEEEEeCCCeEEEEEC-CEECCC-CceEEEEecCCC---ceEEEEecccccCCCeEEEEEE
Confidence            34566777899999999999999999999999999 766643 344443322111   13799999998 9999999999


Q ss_pred             EcCCCceEEEEEEEEecc
Q psy16261         81 KNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~   98 (158)
                      .|..|.....+.|.|...
T Consensus        84 ~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             ECSSCEECCEEEEEEECG
T ss_pred             ECCCCeEEEEEEEEEecc
Confidence            999998777777777653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.50  E-value=4.2e-13  Score=96.97  Aligned_cols=89  Identities=17%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcC-CCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGS-LSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ....|.|.+ +...|.|.|+|.|.|..|.
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~  186 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEES-SSBCCSSSSCEEEECS-----SEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEEC-CEECCCCCcEEEEEcC-----CceEEEEecCCccCccEEEEEEEEeCCCc
Confidence            45678899999999999999999999999 7777766666655432     123799999 9999999999999999999


Q ss_pred             eEEEEEEEEeccCCCC
Q psy16261         87 SEGVIKVYNIGYFGSD  102 (158)
Q Consensus        87 ~~~~~~l~v~~~~~~~  102 (158)
                      ....+.|.|...+..+
T Consensus       187 ~~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          187 DQKTVELDVADVPDPP  202 (305)
T ss_dssp             EEEEEEEEEEBCCCCC
T ss_pred             eeeEEEEEEecCCCCC
Confidence            9888988888766543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.49  E-value=3e-13  Score=91.81  Aligned_cols=84  Identities=18%  Similarity=0.343  Sum_probs=71.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcC-CCCCCCeEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGS-LSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.+ +..+|+|.|+|.|.|..|
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g  185 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFG  185 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEES-SCEECSSSSCEEEECS-----SEEEEECTTCCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEEC-CEEeecCCCEEEEEcC-----CceEEEEeCCCCcccCEeEEEEEEeCCC
Confidence            345678899999999999999999999999 8877776777665433     124799999 999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy16261         86 GSEGVIKVYNI   96 (158)
Q Consensus        86 ~~~~~~~l~v~   96 (158)
                      .....+.|.|.
T Consensus       186 ~~~~~~~l~V~  196 (197)
T 2j8h_A          186 IDQKTVELDVA  196 (197)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEeEEEEEEEe
Confidence            99888888875

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.49  E-value=2.6e-13  Score=91.84  Aligned_cols=84  Identities=23%  Similarity=0.361  Sum_probs=70.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+...+     ..+.|.|.++..+|.|.|+|.|.|..|
T Consensus       110 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g  183 (194)
T 2a38_A          110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRD-GAEIQSSLDFQISQEG-----DLYSLLIAEAYPEDSGTYSVNATNSVG  183 (194)
T ss_dssp             CCCEEECTTEEEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEEET-----TEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred             CccEEEcCCCEEEEEEEEEEecCCeEEEEEC-CEECCCCCcEEEEEcC-----CEEEEEECCCChhcCeEEEEEEEeCCC
Confidence            3455678899999999999999999999999 8887777777665543     123699999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy16261         86 GSEGVIKVYN   95 (158)
Q Consensus        86 ~~~~~~~l~v   95 (158)
                      .....+.|.|
T Consensus       184 ~~~~~~~l~V  193 (194)
T 2a38_A          184 RATSTAELLV  193 (194)
T ss_dssp             EEEEEEEEEE
T ss_pred             ceEEEEEEEE
Confidence            9888888876

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.49  E-value=3.7e-13  Score=92.11  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee------------ecCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI------------HEGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..++..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+            ....++.... .        .|.|.+++
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~-~--------~L~i~~v~   73 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFV-QGSTTALVCYNSQITAPYADRVTFSS-S--------GITFSSVT   73 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEE-ETTEEEEEEETTEECGGGTTTEEEET-T--------EEEESCCC
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEEC-CCceeeEEecCCcccccccCcEEeec-e--------eEEEcccC
Confidence            34567788899999999999999999999999998 4332            1123444332 2        69999999


Q ss_pred             CCCCeEEEEEEEcCCC--ceEEEEEEEEeccC
Q psy16261         70 KSDFGTYKCNAKNTLG--GSEGVIKVYNIGYF   99 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~~~   99 (158)
                      ..|+|.|+|.+.|..|  .....+.|.|...+
T Consensus        74 ~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p  105 (212)
T 1f97_A           74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPP  105 (212)
T ss_dssp             GGGCEEEEEEEEETTSSSEEEEEEEEEEEBCC
T ss_pred             cccCeEEEEEEEccCCCcccEEEEEEEEEcCC
Confidence            9999999999999877  44556667666544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.3e-13  Score=83.17  Aligned_cols=88  Identities=13%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC----------eEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS----------RYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      |..+++.+.+.+|+.+.|.|.+.+  .|.+.|+|+ +..+..+.          ++.+...+     ..++|.|.+++.+
T Consensus        11 ~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~kn-G~~l~~~~~~~~~~~~~~r~~i~~~g-----~~~~L~I~~v~~~   82 (112)
T 2e6q_A           11 LVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLN-GEELKSNEPEGQVEPGALRYRIEQKG-----LQHRLILHAVKHQ   82 (112)
T ss_dssp             EEECCCCEEEETTCEEEEEEEESS--CCCCEEEES-SCBCCSSCCCTTSCTTSCEEEECCBT-----TEEEEEEESCCST
T ss_pred             EecCCCCeEEcCCCcEEEEEEECC--CCeEEEEEC-CEECccCcccccccccccEEEEEeCC-----cEEEEEECCCCHH
Confidence            345567788999999999999997  778999999 88888776          77765433     1347999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEeccCC
Q psy16261         72 DFGTYKCNAKNTLGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  100 (158)
                      |+|.|+|..-+   ....+..|.|...|.
T Consensus        83 D~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           83 DSGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             TCSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             HCccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            99999875544   345678888887653

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.48  E-value=2.2e-13  Score=91.77  Aligned_cols=75  Identities=23%  Similarity=0.392  Sum_probs=57.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+..  ..++......        .|.|.+++.+|.|.|+|.+.
T Consensus         7 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            7 EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVTTISDNRFAMLANN--------NLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             ECCSSEEEETTSCEEECCEEECSSCCEEEEEC------CBCCCTTEEECTTS--------CEEETTCCGGGCEEEEEEEE
T ss_pred             ccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEEC-CccceeccCCeEEEecCC--------CEEEeeCCHhHCcEEEEEEE
Confidence            455667799999999999999999999999999 655542  3455444433        69999999999999999999


Q ss_pred             cCCCce
Q psy16261         82 NTLGGS   87 (158)
Q Consensus        82 n~~g~~   87 (158)
                      |..+..
T Consensus        78 ~~~~~~   83 (189)
T 2v5t_A           78 VEARGE   83 (189)
T ss_dssp             ETTTTE
T ss_pred             EcCCCc
Confidence            987544

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.48  E-value=7.8e-13  Score=81.87  Aligned_cols=93  Identities=13%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCCCeeeecCCeEEEEEeec---ccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHENGSLIHEGSRYHMWTEKF---SSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |...+....+.+|+.+.|.|.+.+.|  .+.+.|+++ +..+.............   ......+.|.|.+++.+|+|.|
T Consensus        13 i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   91 (112)
T 3so5_A           13 ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXD-NEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXY   91 (112)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEET-TEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEE
T ss_pred             EEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccC-CcccccccccceeeeeccCCCccccceEEEEeccccccCCeE
Confidence            34456667789999999999999654  579999999 76664432111111100   0111135899999999999999


Q ss_pred             EEEEEcCCCce-EEEEEEEE
Q psy16261         77 KCNAKNTLGGS-EGVIKVYN   95 (158)
Q Consensus        77 ~C~a~n~~g~~-~~~~~l~v   95 (158)
                      +|.|.|..|.. +..+.|.|
T Consensus        92 ~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           92 QCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEeCCCcEEEeEEEEEe
Confidence            99999999874 45666654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.48  E-value=4e-13  Score=97.37  Aligned_cols=87  Identities=20%  Similarity=0.250  Sum_probs=73.4

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....+    ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g  303 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALASDDHCNLKFEAG----RTAYFTINGVSTADSGKYGLVVKNKYG  303 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEES-SSEECCCSSEEECCBTT----TEEEEEEBSCCSTTCEEEEEEEEETTE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEEC-CEeCCCCCcEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEeCCC
Confidence            4566789999999999999999999999999 88887777766654421    124799999999999999999999999


Q ss_pred             ceEEEEEEEEec
Q psy16261         86 GSEGVIKVYNIG   97 (158)
Q Consensus        86 ~~~~~~~l~v~~   97 (158)
                      .....+.|.|..
T Consensus       304 ~~~~~~~l~V~~  315 (317)
T 2y25_A          304 SETSDFTVSVFI  315 (317)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             eEEEEEEEEEEc
Confidence            999888888864

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.48  E-value=1.9e-13  Score=85.99  Aligned_cols=91  Identities=24%  Similarity=0.399  Sum_probs=62.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC-----eEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS-----RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      ...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....     +......+   ......+.+.+++.+|+|.|+
T Consensus        13 ~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~v~~~D~G~Y~   88 (117)
T 2v9t_A           13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSHRMLLPSG---SLFFLRIVHGRKSRPDEGVYV   88 (117)
T ss_dssp             EECCCCEEECTTCCEEECCEEEEESCCEEEEEET-TEECCCTTTCSSCSEEECTTS---CEEESSCCCBTTBCSSCEEEE
T ss_pred             EcCCCCEEEcCCCcEEEEEECCccCCCeEEEEEC-CEeccccCCCCcceeEEecCC---cEEEEEEEeCCCCcCcCEEEE
Confidence            3456667789999999999999999999999999 76665331     12221121   100111223356899999999


Q ss_pred             EEEEcCCCceEE-EEEEEEec
Q psy16261         78 CNAKNTLGGSEG-VIKVYNIG   97 (158)
Q Consensus        78 C~a~n~~g~~~~-~~~l~v~~   97 (158)
                      |.|.|..|...+ .+.|.+..
T Consensus        89 C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           89 CVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEeCccceEeeeEEEEhhh
Confidence            999999998754 45555543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.47  E-value=2.8e-13  Score=101.44  Aligned_cols=81  Identities=23%  Similarity=0.362  Sum_probs=70.0

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+. .+        .|.|.++..+|+|.|+|.|.|.+|
T Consensus       302 ~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~-~~--------~L~i~~v~~~D~G~Y~C~A~N~~G  371 (384)
T 3kld_A          302 INDIHVAMEESVFWECKANGRPKPTYRWLKN-GDPLLTRDRIQIE-QG--------TLNITIVNLSDAGMYQCVAENKHG  371 (384)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCEEEEEET-TEECCCBTTEEEE-TT--------EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCceEecCCCCEEEEeECCccCCCeEEEEEC-CEECCCCccEEEe-CC--------EEEEeecChhhCEEEEEEEEeCCc
Confidence            3456688999999999999999999999999 8877666666543 23        699999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy16261         86 GSEGVIKVYNI   96 (158)
Q Consensus        86 ~~~~~~~l~v~   96 (158)
                      ...+...|.|.
T Consensus       372 ~~~~~a~L~V~  382 (384)
T 3kld_A          372 VIFSSAELSVI  382 (384)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eEEeceEEEEe
Confidence            99999888875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.47  E-value=9.9e-13  Score=100.12  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+.....+....      ....+|.|.+++.+|+|.|+|.|.|..
T Consensus        54 ~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~-~~~l~~~~~~~~~~------~~~~sL~I~~v~~~D~G~Y~C~a~N~~  126 (423)
T 3qs7_E           54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQN------RGVVSMVILKMTETQAGEYLLFIQSEA  126 (423)
T ss_dssp             --CEEEECSSCCEEEEEECSCCSSCEEEEEET-TEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred             ccccEEEecCCcEEEEEEEEcCCCCeEEEEEC-CCccCccceecccc------ceEEEEEEeecCcccCEEEEEEEEcCC
Confidence            34477899999999999999999999999999 65554322221111      112369999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      |.....+.|.|..
T Consensus       127 g~~~~~~~l~V~~  139 (423)
T 3qs7_E          127 TNYTILFTVSIRN  139 (423)
T ss_dssp             CEEEEEEEEEEC-
T ss_pred             CcEEEEEEEEEec
Confidence            9888888877763

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.47  E-value=1.2e-13  Score=101.02  Aligned_cols=85  Identities=20%  Similarity=0.353  Sum_probs=66.0

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+++ +..+....++.........    +.|.|.+++.+|.|.|+|.+.|..|..
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~  206 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIGGIKLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGSI  206 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBT-TBCCCTTSSTTCCCCCTTT----TEEEECSCCGGGCCCEEEEEEETTEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEEC-CEECcccccccceecccce----EEEEECCCCcccCEEEEEEEEeCCCCE
Confidence            35678899999999999999999999999 7666544332111111111    269999999999999999999999988


Q ss_pred             EEEEEEEEec
Q psy16261         88 EGVIKVYNIG   97 (158)
Q Consensus        88 ~~~~~l~v~~   97 (158)
                      ...+.|.|..
T Consensus       207 ~~~~~l~V~~  216 (334)
T 1ry7_B          207 RQTYTLDVLE  216 (334)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEec
Confidence            8888888775

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.47  E-value=7.4e-13  Score=82.14  Aligned_cols=84  Identities=20%  Similarity=0.272  Sum_probs=66.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+.+|+.+.|.|.+.+.  |.+.|+++ +..+..+.++.+...+     ..+.|.|.+++.+|+|.|+|.+.| 
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~-~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n-   83 (108)
T 2dm7_A           13 QDLKTKEASEGATATLQCELSKV--APVEWKKG-PETLRDGGRYSLKQDG-----TRCELQIHDLSVADAGEYSCMCGQ-   83 (108)
T ss_dssp             SCCBCCEEETTSCEEEEEEBSSS--CCCEEESS-SSBCCSSSSCEEEEET-----TEEEEEESSCCTTTCSEEEEEETT-
T ss_pred             ecCCcEEEeCCCcEEEEEEeCCC--CeeEEEEC-CEECCCCCCEEEEecC-----CEEEEEECCCCcccCEEEEEEEcC-
Confidence            34566779999999999999775  68999999 7777777777766544     124699999999999999999944 


Q ss_pred             CCceEEEEEEEEeccC
Q psy16261         84 LGGSEGVIKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~   99 (158)
                         ....+.|.|...+
T Consensus        84 ---~~~~~~l~V~~~p   96 (108)
T 2dm7_A           84 ---ERTSATLTVRALP   96 (108)
T ss_dssp             ---EEEEEECEEECCC
T ss_pred             ---CEEEEEEEEecCC
Confidence               5667777777654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=8.4e-13  Score=82.48  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=64.0

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+.+|+.+.|.|.+. .|.+.+.|+++ +..+....++.+...+     ....|.|.+++.+|+|.|+|.+.|    ..
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~-g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n----~~   91 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKD-GEEVVESPALLLQKED-----TVRRLVLPAVQLEDSGEYLCEIDD----ES   91 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEET-TEECCCBTTBEEEECS-----SEEEEEESSCCTTTCEEEEEESSS----CE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEEC-CEECccCCCEEEEECC-----CEEEEEECCCCcccCEEEEEEEec----Cc
Confidence            5678899999999995 78899999999 8877766666655432     123799999999999999999998    45


Q ss_pred             EEEEEEEeccC
Q psy16261         89 GVIKVYNIGYF   99 (158)
Q Consensus        89 ~~~~l~v~~~~   99 (158)
                      ..+.|.|...+
T Consensus        92 ~~~~l~V~~~p  102 (113)
T 2cpc_A           92 ASFTVTVTEPP  102 (113)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEecCC
Confidence            66777777654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.47  E-value=9.8e-14  Score=108.41  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=64.9

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.. ..        ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~-~~--------~~L~I~~v~~~D~G~YtC~A~N~~g~~~  405 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFS-RKSFPCEQKGLD-NG--------YSISKFCNHKHQPGEYIFHAENDDAQFT  405 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEET-TEEEECBCCBCS-SS--------SEEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             EEEcCCCeEEEEEEEEecCCCEEEEEEC-CEECcCCccccc-CC--------cEEEEecCCcccCEEEEEEEEeCCCcEE
Confidence            4567899999999999999999999999 887765443211 11        1699999999999999999999999988


Q ss_pred             EEEEEEEeccC
Q psy16261         89 GVIKVYNIGYF   99 (158)
Q Consensus        89 ~~~~l~v~~~~   99 (158)
                      ..+.|.|...|
T Consensus       406 ~~~~L~V~~~P  416 (527)
T 3qs9_E          406 KMFTLNIRRKP  416 (527)
T ss_dssp             EEEEEC--CCC
T ss_pred             EEEEEEEecCC
Confidence            88888776543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.47  E-value=3.3e-13  Score=91.40  Aligned_cols=78  Identities=19%  Similarity=0.324  Sum_probs=61.9

Q ss_pred             EEEec-CCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          9 IGARL-AAPLTLDCHVESYPK--PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         9 ~~~~~-g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..+.+ |+.+.|.|.+.+.|.  +.+.|+++ +..+.......  .        .+.|.|.+++.+|+|.|+|.+.|. +
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~-~~~~~~~~~~~--~--------~~~L~i~~~~~~d~G~Y~C~~~n~-~   79 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN-GVELTATRKNA--S--------NMEYRINKPRAEDSGEYHCVYHFV-S   79 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSSCEEEEEEEET-TEECTTCCBCC--S--------EEEEEESSCCGGGCEEEEEEEEET-T
T ss_pred             EEEccCCceEEEEEEeccCCCCceEEEEEEC-CEECcccceEe--c--------cEEEEEecCCcccCEEEEEEEEeC-C
Confidence            44556 999999999999887  78999999 77765543321  1        237999999999999999999999 8


Q ss_pred             ceEEEEEEEEecc
Q psy16261         86 GSEGVIKVYNIGY   98 (158)
Q Consensus        86 ~~~~~~~l~v~~~   98 (158)
                      .....+.|.|...
T Consensus        80 ~~~~~~~l~V~~~   92 (190)
T 2wv3_A           80 APKANATIEVKAA   92 (190)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             cccccEEEEEecC
Confidence            7777777776654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.46  E-value=1.5e-13  Score=102.77  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...........        +.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~--------~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKK-GGDLPSDKAKFENFN--------KALRITNVSEEDSGEYFCLASNKMGSI  301 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEET-TBCCCTTTEEEEGGG--------TEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEEC-CEECCCCcccccccC--------ceEEEccCCHhHCEEEEEEEEeCCCcE
Confidence            35688999999999999999999999999 776655443211111        269999999999999999999999988


Q ss_pred             EEEEEEEEecc
Q psy16261         88 EGVIKVYNIGY   98 (158)
Q Consensus        88 ~~~~~l~v~~~   98 (158)
                      ...+.|.|...
T Consensus       302 ~~~~~l~V~~~  312 (404)
T 3p3y_A          302 RHTISVRVKAA  312 (404)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEeCC
Confidence            88877776654

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.46  E-value=8.5e-13  Score=86.27  Aligned_cols=93  Identities=14%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--------CeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--------GSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      ..+..+.+.+|+++.|.|.+.+.|.+.+.|++.+        +..+ ...++.......    ...+|.|.+++.+|+|.
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~-~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTSTP----HELSISISNVALADEGE  117 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECS-CCTTEEEEEECS----SEEEEEECSCCGGGCEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceec-ccCCEEEecCCC----CeEEEEECCCChhhCEE
Confidence            3456678999999999999999998999999531        2222 234555443221    12479999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEeccCCCC
Q psy16261         76 YKCNAKNTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        76 Y~C~a~n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |+|.+.|. |.....+.|.|...|..|
T Consensus       118 Y~C~~~n~-~~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          118 YTCSIFTM-PVRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             EEEEECSS-SCEEEEEEEEEECCCC--
T ss_pred             EEEEEEcC-CCceEEEEEEEEeCCCCC
Confidence            99999999 888888999988766443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.3e-14  Score=85.67  Aligned_cols=79  Identities=23%  Similarity=0.423  Sum_probs=61.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....      ..        .|.|.+++.+|+|.|+|.+.|
T Consensus        14 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-~~~~~~~~------~~--------~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           14 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-GVPLPLPP------SP--------VLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             EEESTTSEECTTCEEEEECCCSSCSSCCCCCEES-SSBCSSCC------CS--------EEEEESCCTTTCEEEECEECC
T ss_pred             EECCCCCEEcCCCeEEEEEEEccCCCCEEEEEEC-CEECcCCC------CC--------EEEECCCCcccCEEEEEEEEe
Confidence            3455556688999999999999999999999999 76654432      11        699999999999999999999


Q ss_pred             CCCceEE--EEEEEEe
Q psy16261         83 TLGGSEG--VIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~--~~~l~v~   96 (158)
                      ..+....  .+.|.|.
T Consensus        79 ~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           79 SSHGPQESRAVSISII   94 (96)
T ss_dssp             SSCCCEECCCEEEEEC
T ss_pred             CCCCcEEEEEEEEEEe
Confidence            7665433  4555543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.46  E-value=7.2e-13  Score=85.72  Aligned_cols=83  Identities=23%  Similarity=0.337  Sum_probs=61.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec----------CCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE----------GSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      +...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..          ..++......  .....+.|.|.+++.+
T Consensus        24 ~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~  100 (137)
T 3qr2_A           24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFE-GQGPNDICSQLWDGARLDRVHIHATY--HQHAASTISIDTLVEE  100 (137)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEE-ESSTTCCCEECCTTHHHHTEEEEEEE--SSSEEEEEEECSCCGG
T ss_pred             EEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEEC-CCCccccceeecccCcccceEEeccc--ccccceEEEECCCCcc
Confidence            34456777889999999999999999999999998 543321          1233332211  1112358999999999


Q ss_pred             CCeEEEEEEEcCCCce
Q psy16261         72 DFGTYKCNAKNTLGGS   87 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~   87 (158)
                      |+|.|+|.|.|..|..
T Consensus       101 D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A          101 DTGTYECRASNDPDRN  116 (137)
T ss_dssp             GCEEEEEEEECCTTSS
T ss_pred             cCEEEEEEEEecCCcc
Confidence            9999999999999976

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.46  E-value=2.6e-13  Score=91.73  Aligned_cols=85  Identities=28%  Similarity=0.435  Sum_probs=69.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+....++.....+        .|.|.++..+|+|.|+|.|.|..
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~a~n~~  176 (192)
T 2iep_A          106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-DSALRENSRIAVLESG--------SLRIHNVQKEDAGQYRCVAKNSL  176 (192)
T ss_dssp             CCCCEEEETTSCEEECCEEEEESCCEEEEEET-TEECCCCSSEEECTTS--------CEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCcceEEeCCCcEEEEEEEeccCCceEEEEeC-CEEccCCCcEEEecCC--------cEEEecCChhhCEEEEEEEEcCC
Confidence            34456788999999999999999999999999 8777766666554444        69999999999999999999999


Q ss_pred             CceE-EEEEEEEecc
Q psy16261         85 GGSE-GVIKVYNIGY   98 (158)
Q Consensus        85 g~~~-~~~~l~v~~~   98 (158)
                      |... ..+.|.|..+
T Consensus       177 g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          177 GTAYSKLVKLEVEVF  191 (192)
T ss_dssp             EEEECCCEEEEEEC-
T ss_pred             CcEEEEEEEEEEEeC
Confidence            9873 4577777654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.45  E-value=7.4e-13  Score=102.66  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             eEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ...+.+|+.+.|.|.+.|.|.|. +.|+++ +..+.... ++...... +.+...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~-g~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  399 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYM-NRTFTDKWEDYPKSENE-SNIRYVSELHLTRLKGTEGGTYTFLVSNSDV  399 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESS-SCBCSSSBCCEESCCSS-SCCEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEEC-CeeccCCccceeEEccC-CCceeEEEEEEeecCcccCeEEEEEEEecCc
Confidence            56788999999999999999999 999999 77665543 33222211 2233456899999999999999999999999


Q ss_pred             ceEEEEEEEEecc
Q psy16261         86 GSEGVIKVYNIGY   98 (158)
Q Consensus        86 ~~~~~~~l~v~~~   98 (158)
                      .....+.|.|...
T Consensus       400 ~~~~~~~l~V~~~  412 (524)
T 2ec8_A          400 NAAIAFNVYVNTK  412 (524)
T ss_dssp             EEEEEEEEEECEE
T ss_pred             eEEEEEEEEEecC
Confidence            9888887776643

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.44  E-value=1.7e-12  Score=87.80  Aligned_cols=85  Identities=18%  Similarity=0.336  Sum_probs=71.2

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNAKNTLG   85 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g   85 (158)
                      ....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....++.+....     ..+.|.|.++.. +|.|.|+|.|.|..|
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  184 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-QKLLQNSENITIENTE-----HYTHLVMKNVQRKTHAGKYKVQLSNVFG  184 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEECS-----SEEEEEESSCCHHHHCEEEEEEEECSSC
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeEC-CEECCCCCceEEEEcC-----CEEEEEEccccchhhCceEEEEEEcCcC
Confidence            345678899999999999999999999999 8888777776665543     124799999995 899999999999999


Q ss_pred             ceEEEEEEEEec
Q psy16261         86 GSEGVIKVYNIG   97 (158)
Q Consensus        86 ~~~~~~~l~v~~   97 (158)
                      .....+.|.|.+
T Consensus       185 ~~~~~~~l~V~~  196 (197)
T 3lcy_A          185 TVDAILDVEIQD  196 (197)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             ceEEEEEEEEec
Confidence            999888888764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.44  E-value=2e-12  Score=92.82  Aligned_cols=92  Identities=18%  Similarity=0.042  Sum_probs=67.6

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++ +......................+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus       189 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  267 (289)
T 3mjg_X          189 VQTVVRQGENITLMCIVIGNEVVNFEWTYP-RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND  267 (289)
T ss_dssp             SCSEEETTSCEEEEEEEESCSSBEEEEECT-TSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT
T ss_pred             CcceeEcCCCEEEEEEECCCCCcceEEEcC-CccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC
Confidence            335588999999999999999999999987 4432211111111111011233458999999999999999999999999


Q ss_pred             eEEEEEEEEeccC
Q psy16261         87 SEGVIKVYNIGYF   99 (158)
Q Consensus        87 ~~~~~~l~v~~~~   99 (158)
                      ....+.|.+...+
T Consensus       268 ~~~~~~l~v~~~~  280 (289)
T 3mjg_X          268 HQDEKAINITVVE  280 (289)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             ceeEEEEEEEEEe
Confidence            9999888887765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.44  E-value=2e-12  Score=86.95  Aligned_cols=88  Identities=22%  Similarity=0.337  Sum_probs=68.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecC-CCeeEEEc---CCCeeeecC--CeEEEEEeecccceEEEEEEEcCCC-CCCCeEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP-KPITFWTH---ENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYK   77 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~   77 (158)
                      .+....+.+|+.+.|.|.+.|.| .|.+.|++   ++...+...  .++.+...+     ..+.|.|.+++ .+|+|.|+
T Consensus        89 ~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d~G~Y~  163 (184)
T 3b5h_A           89 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEADPGQYR  163 (184)
T ss_dssp             SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTSSEEEE
T ss_pred             cCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecC-----CeeEEEEeeccccccCceEE
Confidence            34455688999999999999999 79999999   524444322  566555433     12479999999 99999999


Q ss_pred             EEEEcCCCceEEEEEEEEec
Q psy16261         78 CNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~~   97 (158)
                      |.|.|..|.....+.|.|..
T Consensus       164 C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          164 CNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEeCCCcceEEEEEEEec
Confidence            99999999998888888754

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.44  E-value=5.6e-13  Score=92.41  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.....              +.|.|.+++..|+|.|+|.+.
T Consensus        21 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~~~   85 (218)
T 3k0w_A           21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKM-NKEIPNGNT--------------SELIFNAVHVKDAGFYVCRVN   85 (218)
T ss_dssp             EEECCCCEEEETTSBEEEECEETTTTSSEEEEEET-TEECTTCCS--------------SEEEETTCCGGGCEEEEEEEE
T ss_pred             EEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEEC-CEECCCCCC--------------CEEEEccCChhhCeEeEEEEE
Confidence            45677788899999999999999999999999999 766544321              169999999999999999999


Q ss_pred             cCCCce-EEEEEEEEec
Q psy16261         82 NTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        82 n~~g~~-~~~~~l~v~~   97 (158)
                      |..|.. ...+.|.|..
T Consensus        86 n~~~~~~s~~~~l~V~~  102 (218)
T 3k0w_A           86 NNFTFEFSQWSQLDVCD  102 (218)
T ss_dssp             CTTCCEECCCEEEEEEC
T ss_pred             cCCCCceeeEEEEEEEc
Confidence            998754 3345555543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.44  E-value=3.5e-13  Score=92.02  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=64.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      |..++..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.            ...++....         +.|.|.+++
T Consensus         7 i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~---------~~L~i~~~~   76 (209)
T 1nbq_A            7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFD-QGDTTRLVCYNNKITASYEDRVTFLP---------TGITFKSVT   76 (209)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEE-ETTEEEESEETTEECTTTTTTCEEET---------TEEECSCCC
T ss_pred             EEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEc-CCceeEEEEecCccCccccCceEeec---------cEEEEeeCC
Confidence            34566777789999999999999999999999998 43321            123333332         269999999


Q ss_pred             CCCCeEEEEEEEcCCCc--eEEEEEEEEeccC
Q psy16261         70 KSDFGTYKCNAKNTLGG--SEGVIKVYNIGYF   99 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~   99 (158)
                      .+|+|.|+|.+.|..|.  ....+.|.|...+
T Consensus        77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p  108 (209)
T 1nbq_A           77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPP  108 (209)
T ss_dssp             TTSCSEEEEEEEETTSSCEECCEEECCEEBCC
T ss_pred             HHHCcEEEEEEecCCCCccceEEEEEEEecCC
Confidence            99999999999998663  2345555555443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.44  E-value=7.9e-13  Score=91.06  Aligned_cols=85  Identities=19%  Similarity=0.366  Sum_probs=67.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++... .+        .|.|.+++.+|+|.|+|.|.|.
T Consensus       116 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~-~~--------~L~i~~v~~~d~G~Y~C~a~N~  185 (212)
T 2yd1_A          116 GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN-QTKVDMSNPRYSLK-DG--------FLQIENSREEDQGKYECVAENS  185 (212)
T ss_dssp             CCCCEEEETTCCEEECCEEECSSCCEEEEEET-TEECCTTSTTEEEE-TT--------EEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCceEeecCCeEEEEEEeccCCCCeEEEEEC-CeEcccCCCeEEcc-CC--------eEEEccCChhhCEEEEEEeecC
Confidence            34456678899999999999999999999999 777654 3444332 23        6999999999999999999999


Q ss_pred             CCceEEE-EEEEEeccC
Q psy16261         84 LGGSEGV-IKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~~-~~l~v~~~~   99 (158)
                      .|..... +.|.|....
T Consensus       186 ~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          186 MGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             TEEEECCCEEEEEEC--
T ss_pred             CCceeEEEEEEEEEecc
Confidence            9988664 788887754

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=93.16  Aligned_cols=87  Identities=16%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...+.. .+.+|+.+.|.|.+.+ +.+.+.|+|+ +..+....+...  .    ......|.|.+++.+|+|.|+|.+.
T Consensus         8 i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~--~----~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 3p2t_A            8 LWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKE-ESPAPWDRQNPL--E----PKNKARFSIPSMTEDYAGRYRCYYR   78 (196)
T ss_dssp             EEEESCS-EEETTCCEEEEEECCT-TCCEEEEEET-TSCSCSEEECCC--S----SSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEEC-CCCCcccccccc--c----CCceEEEEeccCCcccCceEEEEEe
Confidence            3444555 5889999999999988 7789999999 654432111000  0    0012479999999999999999999


Q ss_pred             cCCCc--eEEEEEEEEec
Q psy16261         82 NTLGG--SEGVIKVYNIG   97 (158)
Q Consensus        82 n~~g~--~~~~~~l~v~~   97 (158)
                      |..|.  .+..+.|.|..
T Consensus        79 n~~g~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           79 SPVGWSQPSDPLELVMTG   96 (196)
T ss_dssp             ETTEEBCCCCCEEEEEEC
T ss_pred             CCCcccCCCccEEEEecC
Confidence            99872  24455565543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.44  E-value=1.3e-12  Score=102.13  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=89.5

Q ss_pred             cCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ++....+.+|+.+.|.|.+. +.|.|.+.|+++ +..+.....+....... ......+.|.|.+++.+|+|.|+|.|.|
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N  311 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECS-SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEEC-CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEe
Confidence            44566788999999999996 899999999999 76665543333222111 1122334699999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCC----C----------------------CCc---------cc----------chhhhhhhccc
Q psy16261         83 TLGGSEGVIKVYNIGYFG----S----------------------DTQ---------YV----------TDEEMQRTNQI  117 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~----~----------------------~~~---------~~----------~~~~~~~~~~~  117 (158)
                      .   ....+.|.|...+.    .                      |..         .+          ..+.+......
T Consensus       312 ~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~  388 (527)
T 3qs9_E          312 H---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKH  388 (527)
T ss_dssp             E---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTT
T ss_pred             C---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcc
Confidence            7   45556665543320    0                      000         00          01122333445


Q ss_pred             ccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        118 ARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       118 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      +.|.|       .|.+.|..|....+..|.|..||
T Consensus       389 D~G~Y-------tC~A~N~~g~~~~~~~L~V~~~P  416 (527)
T 3qs9_E          389 QPGEY-------IFHAENDDAQFTKMFTLNIRRKP  416 (527)
T ss_dssp             CCSCE-------EEEEEETTEEEEEEEEEC--CCC
T ss_pred             cCEEE-------EEEEEeCCCcEEEEEEEEEecCC
Confidence            56666       99999999999999888876554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.43  E-value=4.1e-12  Score=91.02  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=71.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +.+++..+.+.+|+.+.|.|.+.+.|. .+.|++.++..+....++.+...+     ..+.|.|.+++.+|+|.|+|.+.
T Consensus         7 v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~~~   80 (291)
T 2wim_A            7 VTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQAT   80 (291)
T ss_dssp             EEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-----CEEEEEEccCCcccCEEEEEEEe
Confidence            456777888999999999999999874 899999437777666676665443     13479999999999999999999


Q ss_pred             cCCCce-EEEEEEEEecc
Q psy16261         82 NTLGGS-EGVIKVYNIGY   98 (158)
Q Consensus        82 n~~g~~-~~~~~l~v~~~   98 (158)
                      |..|.. ...+.|.+...
T Consensus        81 n~~g~~~~~~~~l~v~~~   98 (291)
T 2wim_A           81 DAKGQTQEATVVLEIYQK   98 (291)
T ss_dssp             CSSSCEEEEEEEEEEECC
T ss_pred             cccCceEEEEEEEEecCC
Confidence            998876 44566666543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.43  E-value=8.4e-13  Score=89.61  Aligned_cols=79  Identities=22%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ...+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....++.. ..        +.|.|.++..+|.|.|+|.|.|..|..
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~-~~--------~~L~i~~v~~~d~G~Y~C~a~n~~g~~  191 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKV-LEPMPSTAEIST-SG--------AVLKIFNIQLEDEGIYECEAENIRGKD  191 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEET-TBCCCTTCEEET-TT--------TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeC-CCcCCCceeecC-CC--------CEEEEccCChhhCEEEEEEEEecCCce
Confidence            55678999999999999999999999999 666554422211 11        269999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy16261         88 EGVIKVYNI   96 (158)
Q Consensus        88 ~~~~~l~v~   96 (158)
                      ...+.|.|.
T Consensus       192 ~~~~~l~V~  200 (201)
T 3s97_C          192 KHQARIYVQ  200 (201)
T ss_dssp             EEEEEEEEE
T ss_pred             eeeEEEEEe
Confidence            888888775

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.43  E-value=3.9e-12  Score=87.17  Aligned_cols=77  Identities=21%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             EecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         11 ARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      ...++.+.|.|.+.+. |.+.+.|+++ +..+....++.+...+     ....|.|.+++.+|+|.|+|.+.|..|....
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~-g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~   87 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTG-----EQIWLQINEPTPNDKGKYVMELFDGKTGHQK   87 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEET-TEECCCCSSEEEEEET-----TEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEEC-CEEccCCCeEEEEEeC-----CEEEEEECCCCcccCEEEEEEEecCCcceEE
Confidence            4467778888888885 5889999999 8888777777665544     1236999999999999999999998887666


Q ss_pred             EEEE
Q psy16261         90 VIKV   93 (158)
Q Consensus        90 ~~~l   93 (158)
                      .+.|
T Consensus        88 ~~~l   91 (212)
T 2r15_A           88 TVDL   91 (212)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.2e-12  Score=80.31  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=63.8

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+.+.+|+.+.|.|.+. .|.+.+.|+|+ +..+....++.+...+     ..+.|.|.+++.+|+|.|+|.+.|    
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~-g~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~~----   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKD-GKKLSSSSKVRVEAVG-----CTRRLVVQQAGQAEAGEYSCEAGG----   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEET-TEECCCCSSEEEEEET-----TEEEEEETTCCTTTCSCEEEEETT----
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEEC-CEECCCCCCEEEEEcC-----CEEEEEECCCCcccCEEEEEEcCC----
Confidence            345788999999999998 88899999999 8887776677665433     124799999999999999999954    


Q ss_pred             eEEEEEEEEecc
Q psy16261         87 SEGVIKVYNIGY   98 (158)
Q Consensus        87 ~~~~~~l~v~~~   98 (158)
                      ....+.|.|..+
T Consensus        88 ~~~~~~l~V~~p   99 (102)
T 2eo1_A           88 QQLSFRLQVAGQ   99 (102)
T ss_dssp             EECCEEEEEESC
T ss_pred             CcEEEEEEEeCC
Confidence            344566666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.43  E-value=8e-13  Score=100.87  Aligned_cols=91  Identities=21%  Similarity=0.390  Sum_probs=70.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      |...+..+.+.+|+.+.|.|.+ +.|.|.+.|+++++..+...   .++.....+        +|.|.+++.+|+|.|+|
T Consensus       344 i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C  414 (440)
T 3zyj_A          344 IVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--------TLNFTNVTVQDTGMYTC  414 (440)
T ss_dssp             EEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTC--------CEEESSCCSTTCEEEEE
T ss_pred             ccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCC--------eEEEccCChhhCEEEEE
Confidence            3455677789999999999999 67999999999746555433   355444444        69999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccCCC
Q psy16261         79 NAKNTLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~~~~~~  101 (158)
                      .|.|..|...+.+.+.|.+.+..
T Consensus       415 ~a~N~~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          415 MVSNSVGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             EEECSSCEEEEEEEEEEC-----
T ss_pred             EEEcCCCcEEEEEEEEEeccccc
Confidence            99999999999999999887644

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.43  E-value=6e-13  Score=99.54  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=72.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++......        .|.|.++..+|+|.|+|.|.|..
T Consensus       318 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a~N~~  388 (403)
T 3laf_A          318 HPSNLYAYESMDIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGS--------NLRILGVVKSDEGFYQCVAENEA  388 (403)
T ss_dssp             CCCCEECCTTCCEEECCEEEEESCCEEEEEET-TEECCCSSSEEEETTT--------EEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCcceEEecCCeEEEEEEEeeccCCEEEEEEC-CEECCCCCcEEEecCc--------cEEEeccccccCEEEEEEEEcCC
Confidence            34455677899999999999999999999999 8777666666655444        79999999999999999999999


Q ss_pred             CceEEEEEEEEecc
Q psy16261         85 GGSEGVIKVYNIGY   98 (158)
Q Consensus        85 g~~~~~~~l~v~~~   98 (158)
                      |.....+.|.|..+
T Consensus       389 G~~~~~~~l~V~~P  402 (403)
T 3laf_A          389 GNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEEEEEEEECCCC
T ss_pred             ceEEEEEEEEEeCC
Confidence            99999999888654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.42  E-value=1.8e-12  Score=94.31  Aligned_cols=79  Identities=22%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             EEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         10 GARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .+..|+.+.|.|.+.|.|.| .+.|+++ +..+....   .....        .|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~-~~~l~~~~---~~~~~--------~L~i~~v~~~d~G~Y~C~a~N~~G~~~  295 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEPTGYNWSTT-MGPLPPFA---VAQGA--------QLLIRPVDKPINTTLICNVTNALGARQ  295 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCCCEEEEEET-TBSCCTTE---EEETT--------EEEECCCSSCCEEEEEEEEECSSCEEE
T ss_pred             eecCCCeEEEEEEecCCCCCcEEEEEEC-CEECCCce---EEeCC--------EEEECcCChhhCEEEEEEEEeCCCcEE
Confidence            35568899999999999999 6999999 66654331   12222        699999999999999999999999999


Q ss_pred             EEEEEEEeccCC
Q psy16261         89 GVIKVYNIGYFG  100 (158)
Q Consensus        89 ~~~~l~v~~~~~  100 (158)
                      ..+.|.|.+.|+
T Consensus       296 ~~~~l~V~~~PP  307 (313)
T 4fqp_A          296 AELTVQVKEGPP  307 (313)
T ss_dssp             EEEEEEEECCC-
T ss_pred             EEEEEEEEeCCC
Confidence            999999987654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.42  E-value=1.7e-12  Score=96.65  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=70.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+.. .        .|.|.++..+|+|.|+|.|.|..|
T Consensus       301 ~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~-~--------~L~i~~v~~~d~G~Y~C~a~N~~G  370 (382)
T 1cs6_A          301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSG-G--------ELRFSKLVLEDSGMYQCVAENKHG  370 (382)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEET-TEECCCCSSEEEET-T--------EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCccEEcCCCeEEEEEEeeeecCCEEEEEEC-CEECCCCceEEEEC-C--------EEEECcCCcccCEEEEEEEEeCCC
Confidence            3455688999999999999999999999999 88877776665532 2        699999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy16261         86 GSEGVIKVYNI   96 (158)
Q Consensus        86 ~~~~~~~l~v~   96 (158)
                      .....+.|.|.
T Consensus       371 ~~~~~~~l~V~  381 (382)
T 1cs6_A          371 TVYASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            99998888875

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.42  E-value=4.2e-13  Score=97.18  Aligned_cols=75  Identities=24%  Similarity=0.322  Sum_probs=59.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...   .++.....+        .|.|.+++..|+|.|+|.|.
T Consensus       114 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~a~  184 (304)
T 2yd9_A          114 GPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLRSG--------ALQIESSEETDQGKYECVAT  184 (304)
T ss_dssp             CCCCEEEETTSCEEECCEEECSSCCEEEEEET-TEECCGGGGTTSEEECTTS--------CEEECSCCGGGCEEEEEEEE
T ss_pred             CCccEEEeCCCeEEEEEECccCCCCeEEEEEC-CEECcCCCCcceEEeCCCe--------EEEEccCCcccCEEEEEEEE
Confidence            34556688899999999999999999999999 7766543   233322222        69999999999999999999


Q ss_pred             cCCCceE
Q psy16261         82 NTLGGSE   88 (158)
Q Consensus        82 n~~g~~~   88 (158)
                      |..|...
T Consensus       185 n~~g~~~  191 (304)
T 2yd9_A          185 NSAGVRY  191 (304)
T ss_dssp             ETTEEEE
T ss_pred             eCCCCEE
Confidence            9988764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.42  E-value=1e-12  Score=94.16  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE-c
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK-N   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~-n   82 (158)
                      .+....+.+|+.+.|.|.+.+.+.+. +.|++.++..+....++......        .|.|.+++.+|.|.|+|.+. +
T Consensus        95 ~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a~~~  166 (289)
T 3ejj_X           95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------GFIIRKAKVLDSNTYVCKTMVN  166 (289)
T ss_dssp             SCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT--------EEEESSCCGGGCEEEEEEEEET
T ss_pred             ccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC--------CEEEeecccccCEEEEEEEEeC
Confidence            34566788999999999999987775 99986437777666777665555        69999999999999999999 5


Q ss_pred             CCCceEEEEEEEEe
Q psy16261         83 TLGGSEGVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~~~~l~v~   96 (158)
                      ..+.....+.|.|.
T Consensus       167 ~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          167 GRESTSTGIWLKVN  180 (289)
T ss_dssp             TEEEECCCEEEEEE
T ss_pred             CCccccccEEEEEE
Confidence            44444555666665

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.42  E-value=6.1e-13  Score=99.10  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=86.9

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCee------eecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSL------IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++ +..      +....++... .        +.|.|.+++.+|+|.|+|.|.|
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~-~--------~~L~i~~v~~~d~G~Y~C~a~n  291 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKF-IEGTTRKQAVVLNDRVKQV-S--------GTLIIKDAVVEDSGKYLCVVNN  291 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEE-CTTSSCEEECCCSSSEEEE-T--------TEEEESSCCGGGCEEEEEEEEC
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEec-CCCCcccccccccCceecc-c--------CEEEECcCCHHHCeEEEEEEec
Confidence            4578899999999999999999999997 322      1122333221 2        2699999999999999999999


Q ss_pred             CCCceEEEEEEEEeccCCC------------------------CCc---------c----cchhhhhhhcccccccccCc
Q psy16261         83 TLGGSEGVIKVYNIGYFGS------------------------DTQ---------Y----VTDEEMQRTNQIARSKWGSE  125 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~~~------------------------~~~---------~----~~~~~~~~~~~~~~~~~g~~  125 (158)
                      ..|.....+.|.|...+..                        +..         .    ...+.+......+.|.|   
T Consensus       292 ~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y---  368 (388)
T 2v5m_A          292 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMY---  368 (388)
T ss_dssp             SSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEE---
T ss_pred             CCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEE---
Confidence            9998877777776553210                        000         0    01122333445566677   


Q ss_pred             ccceEeeeccCCceEEEEccccC
Q psy16261        126 RTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       126 ~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                          .|.+.|..|....++.|.|
T Consensus       369 ----~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          369 ----QCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             ----EEEEECSSCEEEEEEEEEE
T ss_pred             ----EEEEEcCCCcEEEEEEEEe
Confidence                9999999999988887764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.42  E-value=1.3e-12  Score=89.49  Aligned_cols=93  Identities=27%  Similarity=0.411  Sum_probs=62.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC---e-EEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS---R-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....   + .......  .......|.|.+++..|+|.|+
T Consensus        12 i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A           12 IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSHRMLLPS--GSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEECCCCEEECTTCCEEECCEEEEESCCEEEEEET-TEECCCTTTCTTCSEEECTT--SCEEESSCCCCSSCCCSCEEEE
T ss_pred             eecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEEC-CEEeeccccccccceEEecC--CcEEEEEEEecCCCcccCeEEE
Confidence            34556677889999999999999999999999999 76654321   0 1111111  1111123556677999999999


Q ss_pred             EEEEcCCCce-EEEEEEEEec
Q psy16261         78 CNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        78 C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      |.+.|..|.. ...+.|.|..
T Consensus        89 C~~~n~~g~~~~~~~~l~V~~  109 (212)
T 2v9r_A           89 CVARNYLGEAVSHDASLEVAI  109 (212)
T ss_dssp             EEEEETTEEEECCCEEEEECE
T ss_pred             EEEECCCCceeecceEEEEEe
Confidence            9999988765 3345555443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.41  E-value=7.9e-12  Score=96.87  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCee--eecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSL--IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .+....+.+|+.+.|.|.+.+.|.|. +.|+++ +..  +....+....  ........+.|.|.++..+|+|.|+|.|.
T Consensus       217 ~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~  293 (524)
T 2ec8_A          217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE-NSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFMCYAN  293 (524)
T ss_dssp             SCSEEEEETTSCEEEEEEEEESSTTCEEEEEET-TCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeC-CCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEEEEEE
Confidence            44555788999999999999999887 999999 555  2222222111  00012234589999999999999999999


Q ss_pred             cCCCceEEEEEEEEecc
Q psy16261         82 NTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~   98 (158)
                      |..|.....+.|.|...
T Consensus       294 n~~g~~~~~~~l~V~~~  310 (524)
T 2ec8_A          294 NTFGSANVTTTLEVVDK  310 (524)
T ss_dssp             CSSCEEEEEEEEEEESS
T ss_pred             ecCCceEEEEEEEEecc
Confidence            99998887877777543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.41  E-value=3e-12  Score=95.37  Aligned_cols=90  Identities=21%  Similarity=0.352  Sum_probs=70.9

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+....  ++.+....     ..+.|.|.++...|+|.|+|.|.|..
T Consensus       108 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~-g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~N~~  181 (389)
T 2jll_A          108 TIYYSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLKTYSTG-----RKMILEIAPTSDNDFGRYNCTATNHI  181 (389)
T ss_dssp             CEEEECTTCCEEEEECEEEESCCEEEEEET-TEESSCTTCTTEEEEECS-----SCEEEEECCCSTTSSEEEEEEEEETT
T ss_pred             ceEEeccCCEEEEEEEEEecCCCeEEEEEC-CccCCcccCceEEEeccC-----CEEEEEECCCChhhCEEEEEEEEcCC
Confidence            334678899999999999999999999999 77776543  55444332     12379999999999999999999999


Q ss_pred             CceEEEEEEEEeccCCCC
Q psy16261         85 GGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        85 g~~~~~~~l~v~~~~~~~  102 (158)
                      |.....+.|.+...+..+
T Consensus       182 G~~~~~~~l~v~~~P~~P  199 (389)
T 2jll_A          182 GTRFQEYILALADVPSSP  199 (389)
T ss_dssp             EEEEEEEEEEECCCCCCC
T ss_pred             CcEEEEEEEEecCCCCCC
Confidence            998888777776655443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.41  E-value=2.1e-12  Score=90.25  Aligned_cols=101  Identities=23%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEc----CCCeeeecCCeE--EEEEe-ecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTH----ENGSLIHEGSRY--HMWTE-KFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~----~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      +....+.+|+.+.|.|.+.+.|.|.+.|++    + +..+......  ..... ........+.|.|.++..+|.|.|+|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN-GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSS-SCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEEcccCC-CcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            344557789999999999999999999999    6 6555443221  11111 11122234579999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccCCCCCcccc
Q psy16261         79 NAKNTLGGSEGVIKVYNIGYFGSDTQYVT  107 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~  107 (158)
                      .|.|..|.....+.|.|...+..+...+.
T Consensus       200 ~a~N~~g~~~~~~~l~V~~~p~~~~~~ve  228 (241)
T 3grw_A          200 RATNFIGVAEKAFWLSVHGPRAAEEELVE  228 (241)
T ss_dssp             EEECSSCEEEEEEEEEC------------
T ss_pred             EEecCcceEEEEEEEEecCCCCCCcccee
Confidence            99999999999999999887766555443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.41  E-value=2.7e-12  Score=88.44  Aligned_cols=87  Identities=23%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...   .++......     ..+.|.|.++..+|.|.|+|.|.
T Consensus       114 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-g~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~  187 (212)
T 2yd6_A          114 GPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSNNNGRIKQLRSE-----SIGALQIEQSEESDQGKYECVAT  187 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEET-TEEC------CCEEEEEET-----TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcceeEecCCCEEEEEEecCCCCCeEEEEEC-CccccCcCCCceEEEEecC-----CeEEEEEcCCCcccCEEEEEEEE
Confidence            34455678899999999999999999999999 7766543   344443322     12479999999999999999999


Q ss_pred             cCCCceEE-EEEEEEec
Q psy16261         82 NTLGGSEG-VIKVYNIG   97 (158)
Q Consensus        82 n~~g~~~~-~~~l~v~~   97 (158)
                      |..|.... .+.|.+..
T Consensus       188 N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          188 NSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             CCCCccccccccEEEEe
Confidence            99998744 45555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=5.8e-14  Score=103.97  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=90.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAK   81 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~   81 (158)
                      ..+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+. ...+..        ....+.|.|.+++..|+| .|+|.|.
T Consensus       163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILT-ELEQSATVMKSG--------GLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             EECCSSCCBTTCCEEEEEEEECSSCCCCCEEES-CCCSSEEECCCC--------CSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcC-Cceeecccccce--------ecccceEEEeeCChHHCCCeEEEEEE
Confidence            344555678999999999999999999999999 43322 111111        112347999999999999 9999999


Q ss_pred             cCCCceEEEEEEEEeccCCC--------------------CCc---------ccc---------------------hhhh
Q psy16261         82 NTLGGSEGVIKVYNIGYFGS--------------------DTQ---------YVT---------------------DEEM  111 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~--------------------~~~---------~~~---------------------~~~~  111 (158)
                      |..|.....+.|.|...+..                    |..         .+.                     .+.+
T Consensus       234 n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I  313 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL  313 (347)
T ss_dssp             ETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEE
T ss_pred             cCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEE
Confidence            99887665554443322210                    000         000                     0233


Q ss_pred             hhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        112 QRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       112 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      ......+.|.|       .|.|.|..|....+..+.|.+||
T Consensus       314 ~~v~~~d~G~Y-------~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          314 NQPTHVNNGNY-------TLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             SSCCGGGCEEE-------EEEEEETTEEEEEEEEECSCCCC
T ss_pred             CCCCcccCceE-------EEEEecCCCceeeEEEEEecCCC
Confidence            33345566666       99999999999999999987765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.40  E-value=5.9e-13  Score=102.36  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=66.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee---cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.   ...++.+...+        +|.|.+++.+|+|.|+|.|.|
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~-~~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a~N  462 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSP-RKHLVSAKSNGRLTVFPDG--------TLEVRYAQVQDNGTYLCIAAN  462 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECT-TSCBC-------CEECTTS--------CEEESSCCSTTCEEEEEEEEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEEC-CccccccCCCceEEeCCCC--------EEEEeeCChHHCEEEEEEEEe
Confidence            4667789999999999999999999999999 55443   22344443333        699999999999999999999


Q ss_pred             CCCceEEEEEEEEe
Q psy16261         83 TLGGSEGVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~~~~l~v~   96 (158)
                      ..|..+..+.|.|.
T Consensus       463 ~~g~~~~~~~l~V~  476 (477)
T 2id5_A          463 AGGNDSMPAHLHVR  476 (477)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99999888888775

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.40  E-value=4.2e-13  Score=90.48  Aligned_cols=134  Identities=11%  Similarity=0.098  Sum_probs=84.9

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCee-eec-------------CCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSL-IHE-------------GSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +.. +..             ..++......  ......+|.|.+++.+|
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~i~~v~~~D   79 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNS-NQIKILGNQGSFLTKGPSKLNDRADSRRSL--WDQGNFPLIIKNLKIED   79 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEET-TCCEEEEEETTEEEECSCTTGGGEECCGGG--GGGTBCCEEECSCCGGG
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeC-CccceEEecCceEecCChhhCCcccccccc--ccCCeEEEEEecCCHHH
Confidence            356789999999999999999999999999 432 211             1122222100  00002259999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEecc--CCC------------------CCc-------------ccchhhhhhhccccc
Q psy16261         73 FGTYKCNAKNTLGGSEGVIKVYNIGY--FGS------------------DTQ-------------YVTDEEMQRTNQIAR  119 (158)
Q Consensus        73 ~G~Y~C~a~n~~g~~~~~~~l~v~~~--~~~------------------~~~-------------~~~~~~~~~~~~~~~  119 (158)
                      +|.|+|.+.|..+..    .|.|...  +..                  +..             ....+.+......+.
T Consensus        80 ~G~Y~C~~~~~~~~~----~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~  155 (184)
T 2ny1_B           80 SDTYICEVEDQKEEV----QLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS  155 (184)
T ss_dssp             CEEEEEEETTEEEEE----EEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEESSEEEESSCCGGGC
T ss_pred             CEEEEEEEEcCCCcE----EEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCceEEEEecCCcCCC
Confidence            999999999875533    2222211  100                  100             001133334455667


Q ss_pred             ccccCcccceEeeeccCCceEEEEccccCCCCCCC
Q psy16261        120 SKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGD  154 (158)
Q Consensus       120 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (158)
                      |.|       .|.+.|..+....+..+.|-..|..
T Consensus       156 G~Y-------~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          156 GTW-------TCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             EEE-------EEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             eEE-------EEEEEECCceEEEEEEEEEEecCCC
Confidence            777       9999999999989888887666554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=87.26  Aligned_cols=80  Identities=26%  Similarity=0.460  Sum_probs=66.8

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++......       +.|.|.++..+|+|.|+|.|.|..|...
T Consensus       108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  179 (189)
T 2v5t_A          108 ATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSN-------TELTVRNIINSDGGPYVCRATNKAGEDE  179 (189)
T ss_dssp             EETTSCCCEEEECEEEEESCCEEEEEET-TEECCCSSSEEEETTT-------TEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ccccCCCcEEEEEEEccCCCCeEEEEEC-CEECcCCCcEEEecCC-------CEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence            3455799999999999999999999999 8877766666544322       2699999999999999999999999998


Q ss_pred             EEEEEEEe
Q psy16261         89 GVIKVYNI   96 (158)
Q Consensus        89 ~~~~l~v~   96 (158)
                      ..+.|.|.
T Consensus       180 ~~~~l~V~  187 (189)
T 2v5t_A          180 KQAFLQVF  187 (189)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88887765

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.40  E-value=3.4e-13  Score=93.19  Aligned_cols=80  Identities=23%  Similarity=0.198  Sum_probs=55.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee---cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++++....   ...++.+...+  .   ...+.|.+++.+|+|.|+|.|.|
T Consensus       113 ~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g--~---l~il~i~~v~~~D~G~YtC~A~N  187 (203)
T 4fa8_A          113 SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG--S---LSVAVDLSLPKPWHLPVTCVGKN  187 (203)
T ss_dssp             EEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTS--C---EEEEEEEEECSSCCCCEEEEEES
T ss_pred             ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCC--C---EEEEEECCCCHHHCEEEEEEEEc
Confidence            3344466899999999999999999999987444332   22344443332  1   12466789999999999999999


Q ss_pred             CCCceEEE
Q psy16261         83 TLGGSEGV   90 (158)
Q Consensus        83 ~~g~~~~~   90 (158)
                      ..|.....
T Consensus       188 ~~G~a~~v  195 (203)
T 4fa8_A          188 DKEEAHGV  195 (203)
T ss_dssp             SSCEEEEE
T ss_pred             CCCEEEEE
Confidence            99987653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.39  E-value=5.1e-12  Score=87.25  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=64.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCC-----CeeEEEcCCCeeeec---------------CCeEEEEEeecccceEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPK-----PITFWTHENGSLIHE---------------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~-----p~i~W~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~   62 (158)
                      ..+++.+.+.+|+.+.|.|.+.+.|.     +.+.|+++ +..+..               ..|..+....  .....++
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~-~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~--~~~~~~~   81 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEME-DKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ--LSLGNAA   81 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEET-TEEEEEEETTEECSSSSCGGGSSSEEECHHH--HTTTEEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEEC-CcEEEEEeCCccccccccccccCceEEcccc--ccCCEEE
Confidence            45677788999999999999988774     38999997 432210               1233222110  0011347


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      |.|.+++.+|+|.|+|.+.| .|.....+.|.|...+
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~  117 (222)
T 3sbw_C           82 LQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPY  117 (222)
T ss_dssp             EEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCC
T ss_pred             EEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCC
Confidence            99999999999999999999 5666677777776544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.39  E-value=6.8e-12  Score=86.66  Aligned_cols=93  Identities=20%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCe-EEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHENGSLIHEGSR-YHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +..+.+.+|+.+.|.|.+.|.|.  +.+.|+++ +..+..... ........  ..+...+.|.|.+++.+|+|.|+|.|
T Consensus       112 ~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (213)
T 2x1w_L          112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA  190 (213)
T ss_dssp             CSCEEEETTCCEEEEEEEEECTTBCCEEEEECS-CSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEcCCCCEEEEEEEECCCCCceEEEEEec-CCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence            34447889999999999999654  47999999 554321111 00000000  00223457999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccC
Q psy16261         81 KNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~~   99 (158)
                      .|..|.....+.|.|...+
T Consensus       191 ~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          191 SSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             ECSSCEEEEEEEEEEEC--
T ss_pred             ecCCCcEEEEEEEEEeccc
Confidence            9999999999999887654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=92.62  Aligned_cols=132  Identities=16%  Similarity=0.182  Sum_probs=84.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+..  ..++......        .|.|.++...|.|.|+|.+.|.
T Consensus       105 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~~~n~  175 (291)
T 2wim_A          105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVTTISDNRFAMLANN--------NLQILNINKSDEGIYRCEGRVE  175 (291)
T ss_dssp             CCSEEEETTSCEEECCCCBCSSCCEEEEECC-----CBCCCSSEEECTTS--------CEEETTCCGGGCEEEEEEEEET
T ss_pred             CCChhhcCCCCEEEEEEEccCCCCEEEEEEC-CccccccCCceEEEccCC--------CEEEEecchhhCEEEEEEEEEC
Confidence            3445688999999999999999999999999 655543  3455444333        6999999999999999999998


Q ss_pred             CCceE--EEEEEEEeccCCCCCc-----------------------ccc------------------------hhhhhhh
Q psy16261         84 LGGSE--GVIKVYNIGYFGSDTQ-----------------------YVT------------------------DEEMQRT  114 (158)
Q Consensus        84 ~g~~~--~~~~l~v~~~~~~~~~-----------------------~~~------------------------~~~~~~~  114 (158)
                      .+...  ..+.+.+...+.....                       +..                        .+.+...
T Consensus       176 ~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~  255 (291)
T 2wim_A          176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNI  255 (291)
T ss_dssp             TTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESC
T ss_pred             CCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeC
Confidence            76542  3455555443311000                       000                        0111112


Q ss_pred             cccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261        115 NQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG  153 (158)
Q Consensus       115 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (158)
                      ...+.|.|       .|++.|..|....++.+.+-+|+.
T Consensus       256 ~~~d~G~Y-------~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          256 INSDGGPY-------VCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             CSTTCEEE-------EEEEEETTEEEEEEEEEEC-----
T ss_pred             CcccCEEE-------EEEEEECCCceeeeEEEEEEEecc
Confidence            23344444       999999999999999999766654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.39  E-value=2.5e-12  Score=87.94  Aligned_cols=88  Identities=10%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-------------------CCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-------------------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~   62 (158)
                      +++.+....+.+|+.+.|.|...+.+.+.+.|+++ ......                   ..++.+....        +
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~--------~   72 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKG-NTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--------S   72 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEES-SCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS--------C
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccC-CCCCccceEEEEecCCCccccCccccceeEEecCC--------e
Confidence            34555566789999999999998889999999987 321111                   1233222222        6


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCC-CceEEEEEEEEecc
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTL-GGSEGVIKVYNIGY   98 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~   98 (158)
                      |.|.+++.+|+|.|+|.+.|.. +.....+.|.|...
T Consensus        73 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  109 (208)
T 3r4d_A           73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP  109 (208)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECC
T ss_pred             EEEccccccCCeEEEEEEEcccCceeEEEEEEEeccC
Confidence            9999999999999999999985 44566667776554

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.39  E-value=7.9e-13  Score=91.12  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=63.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....  ........   ......|.|.+++..|+|.|+|.
T Consensus        12 i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A           12 IIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKD---GALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             EEECCCCEEECTTSCEEECCEEECSSCCEEEEEET-TEECCCSSSSSSEEECTT---SCEEESSCCBSSSCBCCEEEEEE
T ss_pred             EecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEEC-CcCccCCCccceeEEecC---CceEEEEEeccCCcccCceEEEE
Confidence            34556677899999999999999999999999999 77665431  11221111   11112347889999999999999


Q ss_pred             EEcCCCceE-EEEEEEEe
Q psy16261         80 AKNTLGGSE-GVIKVYNI   96 (158)
Q Consensus        80 a~n~~g~~~-~~~~l~v~   96 (158)
                      +.|..|... ....|.|.
T Consensus        88 ~~n~~g~~~~~~~~l~v~  105 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIA  105 (217)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EecCCCccccccceEEEE
Confidence            999888652 23444443

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.39  E-value=1.3e-12  Score=97.45  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=64.2

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....  ++...... ..    +.|.|.++..+|+|.|+|.|.|..
T Consensus       220 ~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~-g~~~~~~~~~~~~~~~~~-~~----~~L~i~~~~~~d~G~Y~C~a~n~~  293 (395)
T 1bih_A          220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPEDRITRHNRT-SG----KRLLFKTTLPEDEGVYTCEVDNGV  293 (395)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEET-TEECCCCTTSSEESCSSS-TT----SEEEESSCCGGGCEEEEEEECCSS
T ss_pred             CceEEECCCcEEEEEEeccCCCCeEEEEEC-CEEcCCCCceeEEEEecC-CC----ceEEEccCChhhCEEEEEEEEeCC
Confidence            446688999999999999999999999999 77665432  22211111 11    159999999999999999999999


Q ss_pred             CceEE-EEEEEEec
Q psy16261         85 GGSEG-VIKVYNIG   97 (158)
Q Consensus        85 g~~~~-~~~l~v~~   97 (158)
                      |.... .+.|.|..
T Consensus       294 g~~~~~~~~l~V~~  307 (395)
T 1bih_A          294 GKPQKHSLKLTVVS  307 (395)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEEc
Confidence            98654 66666554

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.38  E-value=4.4e-12  Score=100.01  Aligned_cols=85  Identities=18%  Similarity=0.284  Sum_probs=75.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.++|+++ +..+..+.++.+...+ +    ..+|.|.++.+.|+|.|+|.|.|..
T Consensus       488 ~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~-~~el~~s~~~~i~~~~-~----~~~L~I~~~~~~D~G~Yt~~A~N~~  561 (573)
T 3uto_A          488 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRYNG-N----DYGLTINRVKGDDKGEYTVRAKNSY  561 (573)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSCCEEEEEET-TEECCSSSSEEEEEET-T----EEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCCcEEeCCCcEEEEEEEEccCCCeEEEEEC-CEEcccCCcEEEEEcC-C----EEEEEEcCCCcccCcEEEEEEEeCC
Confidence            34556788999999999999999999999999 8888888888887655 2    3479999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy16261         85 GGSEGVIKVYN   95 (158)
Q Consensus        85 g~~~~~~~l~v   95 (158)
                      |..++.+.|.|
T Consensus       562 G~~~~~v~l~V  572 (573)
T 3uto_A          562 GTKEEIVFLNV  572 (573)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            99999998877

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.38  E-value=9.4e-12  Score=89.16  Aligned_cols=92  Identities=18%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +.+.|....+.+|+.+.|.|.+.+.| .+.+.|++.++..+.. ..++.+.....    ..+.|.|.+++.+|+|.|+|.
T Consensus         5 v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             EEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             eEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCC----CeEEEEEecCCCCCCEEEEEE
Confidence            45677788899999999999999987 6899999932766653 35555543221    124799999999999999999


Q ss_pred             EEcCCCce-EEEEEEEEec
Q psy16261         80 AKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        80 a~n~~g~~-~~~~~l~v~~   97 (158)
                      +.|..|.. ...+.|.|..
T Consensus        81 ~~n~~g~~~~~~~~l~v~~   99 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIFQ   99 (291)
T ss_dssp             EECTTSCEEEEEEEEEEEC
T ss_pred             EEcCCCCeeEEEEEEEeec
Confidence            99998653 4566666543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.38  E-value=4.5e-12  Score=87.21  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             eecCce-EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          3 VIPSQL-IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         3 ~~~~~~-~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .+.+.. +.+.+|+.+.|.|.+.|.|.|.+.|++..+..+  ..+....  +     ..+.|.|.+++.+|+|.|.|.|.
T Consensus         4 ~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~~--~-----~~~~L~I~~v~~~D~G~Y~C~a~   74 (202)
T 1vca_A            4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTNE--G-----TTSTLTMNPVSFGNEHSYLCTAT   74 (202)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEEE--T-----TEEEEEESSCCGGGCSEEEEEEE
T ss_pred             EECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEEc--C-----CccEEEECcCCHHHCEEEEEEEE
Confidence            344444 445599999999999999999999998522221  1222111  1     01369999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccC
Q psy16261         82 NTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~   99 (158)
                      |..|..+..+.|.|...+
T Consensus        75 n~~~~~~~~~~l~V~~~p   92 (202)
T 1vca_A           75 CESRKLEKGIQVEIYSFP   92 (202)
T ss_dssp             ETTEEEEEEEEEEEEBCC
T ss_pred             ECCceEeeEEEEEEEeCC
Confidence            998888878888887654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.38  E-value=1.9e-12  Score=88.58  Aligned_cols=84  Identities=24%  Similarity=0.453  Sum_probs=66.7

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +....+.+|+.+.|.|.+ .+.|.|.+.|+++ +..+... .++.. ...        .|.|.++..+|.|.|+|.|.|.
T Consensus       118 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~-~~~l~~~~~~~~~-~~~--------~L~i~~~~~~d~G~Y~C~a~N~  187 (212)
T 2v9r_A          118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKD-GSPLDDKDERITI-RGG--------KLMITYTRKSDAGKYVCVGTNM  187 (212)
T ss_dssp             CCCEEEETTSCEEEECBCCCEESCCEEEEEET-TEEECTTSTTEEE-ETT--------EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCceEecCCCcEEEEEecCCCCCCCEEEEEEC-CccCCCCcceEEc-cCC--------eEEEeeCCHhhCeeEEEEEecc
Confidence            345668899999999999 9999999999999 7777654 33333 233        6999999999999999999999


Q ss_pred             CCceEE-EEEEEEeccC
Q psy16261         84 LGGSEG-VIKVYNIGYF   99 (158)
Q Consensus        84 ~g~~~~-~~~l~v~~~~   99 (158)
                      .|.... .+.|.|...|
T Consensus       188 ~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          188 VGERESEVAELTVLERP  204 (212)
T ss_dssp             TEEEECCCEEEEEEC--
T ss_pred             cCceecceEEEEEEeCc
Confidence            998655 4788887654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=91.74  Aligned_cols=74  Identities=22%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+ .+.|+++ +..+....       .        .|.|.+++.+|.|.|+|.+
T Consensus         4 i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~-g~~~~~~~-------~--------~l~i~~~~~~d~G~Y~C~~   67 (262)
T 3rjd_A            4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN-GTATQTST-------P--------SYRITSASVNDSGEYRCQR   67 (262)
T ss_dssp             EEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEET-TEECSCCS-------S--------EEEESSCCGGGCEEEEEEE
T ss_pred             EecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEEC-CEEeeccC-------C--------eEEEecCCcccCeEEEEEE
Confidence            5567777789999999999999999988 9999999 77664331       1        6999999999999999999


Q ss_pred             EcCCCceEEEE
Q psy16261         81 KNTLGGSEGVI   91 (158)
Q Consensus        81 ~n~~g~~~~~~   91 (158)
                      .|..++....+
T Consensus        68 ~~~~~s~~~~l   78 (262)
T 3rjd_A           68 GLSGRSDPIQL   78 (262)
T ss_dssp             SSSCCCCCEEE
T ss_pred             ecCCccccEEE
Confidence            99876654333

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.37  E-value=2.9e-12  Score=92.08  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeee----ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ....+.+|+.+.|.|.+.|.|.|. +.|+++ +..+    ...........  ......+.|.|.+++.+|+|.|+|.|.
T Consensus       196 ~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~d~G~Y~C~a~  272 (290)
T 2o26_X          196 TSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM-NPQPQHIAQVKHNSWHRGD--FNYERQETLTISSARVDDSGVFMCYAN  272 (290)
T ss_dssp             SBCCCCTTCCEEEEEEEEESSTTCEEEEEEE-SSSEEECCCEECCEEEEET--TEEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred             CcceEecCCcEEEEEEEecCCcceeEEEecC-CCCCccceeecccccccCc--eeeEEEEEEEEcCCCcccCeEEEEEEe
Confidence            334577899999999999999996 999999 5542    22221111110  011234589999999999999999999


Q ss_pred             cCCCceEEEEEEEEecc
Q psy16261         82 NTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~   98 (158)
                      |..|.....+.|.|...
T Consensus       273 N~~g~~~~~~~l~V~~~  289 (290)
T 2o26_X          273 NTFGSANVTTTLKVVEK  289 (290)
T ss_dssp             CSSCEEEEEEEECC---
T ss_pred             CCCCcEEEEEEEEEEeC
Confidence            99999988888877654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.37  E-value=3.9e-12  Score=89.26  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             eecCceEEEecCCCEEEEeEEee---cCCCeeEEEcCCCeee-----e-------------------------cCCeEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVES---YPKPITFWTHENGSLI-----H-------------------------EGSRYHM   49 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g---~p~p~i~W~~~~~~~~-----~-------------------------~~~~~~~   49 (158)
                      ..++..+.+.+|+.+.|.|.+.+   .|.+.+.|+++ +...     .                         ...|+.+
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKG-ASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEE-EETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeC-CCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            45667788999999999999998   88889999998 4321     0                         0111111


Q ss_pred             EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-----EEEEEEEEecc
Q psy16261         50 WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-----EGVIKVYNIGY   98 (158)
Q Consensus        50 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~   98 (158)
                      ...  +    ..+|.|.+++.+|+|.|+|.+.|..+..     ...+.|.|...
T Consensus        85 ~~~--~----~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           85 ANL--A----APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             SCT--T----SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             ccC--C----cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence            110  0    1269999999999999999999987753     44677777654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=7.3e-12  Score=83.97  Aligned_cols=92  Identities=17%  Similarity=0.304  Sum_probs=69.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....+.......   ....+.|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            6 MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -CCCEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             EeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEEC-CeecCCCCceEEEecC---CCceEEEEEeecCcccCeEEEEEEEc
Confidence            4567778899999999999999999999999999 8777666554443322   11235799999999999999999999


Q ss_pred             CCCce-EEEEEEEEecc
Q psy16261         83 TLGGS-EGVIKVYNIGY   98 (158)
Q Consensus        83 ~~g~~-~~~~~l~v~~~   98 (158)
                      ..|.. ...+.|.|...
T Consensus        82 ~~~~~~~~~~~l~V~~~   98 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGV   98 (182)
T ss_dssp             CTTCEECCCEEEEEECS
T ss_pred             CCCcEEEEEEEEEEecC
Confidence            87753 34566665543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.37  E-value=1.4e-12  Score=87.42  Aligned_cols=72  Identities=22%  Similarity=0.376  Sum_probs=57.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+. +.|+++ +..+....               +.|.|.+++.+|+|.|+|.+
T Consensus        10 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~-~~~~~~~~---------------~~L~i~~~~~~d~G~Y~C~~   73 (175)
T 1fnl_A           10 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN-ESLISSQA---------------SSYFIDAATVNDSGEYRCQT   73 (175)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEET-TEEEESSC---------------SEEEESSCCGGGCEEEEEEC
T ss_pred             EEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEEC-CEEccCCc---------------eEEEEeCCCcccCEEEEEEe
Confidence            34556666789999999999999998876 789999 76654321               16999999999999999999


Q ss_pred             EcCCCceEE
Q psy16261         81 KNTLGGSEG   89 (158)
Q Consensus        81 ~n~~g~~~~   89 (158)
                      .|..+....
T Consensus        74 ~n~~~s~~~   82 (175)
T 1fnl_A           74 NLSTLSDPV   82 (175)
T ss_dssp             SSSCCCCCE
T ss_pred             eCCcccccE
Confidence            987654433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.37  E-value=2.3e-12  Score=92.41  Aligned_cols=81  Identities=26%  Similarity=0.485  Sum_probs=65.8

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC----eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS----RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....    ++......       +.|.|.++..+|+|.|+|.|.|..
T Consensus       206 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~a~N~~  277 (291)
T 1qz1_A          206 ATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEKHIFSDDS-------SELTIRNVDKNDEAEYVCIAENKA  277 (291)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEET-TEECCCC--CCSSEEECTTS-------CEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccccCceEEEEEEEEEeCCCcEEEEEC-CEECcCCCCCCcceEEcCCC-------cEEEEEecChhcCEEEEEEEEeCC
Confidence            3456799999999999999999999999 77765543    33332211       369999999999999999999999


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      |.....+.|.|..
T Consensus       278 G~~~~~~~l~V~~  290 (291)
T 1qz1_A          278 GEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CceEEEEEEEEEc
Confidence            9998888888764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.36  E-value=5.9e-12  Score=93.86  Aligned_cols=76  Identities=26%  Similarity=0.424  Sum_probs=65.4

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..+ ++.+.. +        .|.|.++..+|+|.|+|.|.|..|...
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~-~~~~~~-~--------~L~i~~~~~~d~G~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHN-AKPLSGG-RATVTD-S--------GLVIKGVKNGDKGYYGCRATNEHGDKY  387 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEET-TEECCSS-SEEEET-T--------EEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEEC-CEECCCC-ceEEEC-C--------EEEEeeCCcccCEEEEEEEEccCCCce
Confidence            6688999999999999999999999999 7776544 554432 2        699999999999999999999999998


Q ss_pred             EEEEEEE
Q psy16261         89 GVIKVYN   95 (158)
Q Consensus        89 ~~~~l~v   95 (158)
                      ..+.|.|
T Consensus       388 ~~~~l~V  394 (395)
T 1bih_A          388 FETLVQV  394 (395)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.36  E-value=2.6e-12  Score=88.53  Aligned_cols=83  Identities=23%  Similarity=0.418  Sum_probs=65.8

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec--------CCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE--------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      +....+.+|+.+.|.|.+ .+.|.|.+.|+++ +..+..        ..++......        .|.|.+++.+|+|.|
T Consensus       115 ~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y  185 (217)
T 2vr9_A          115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIVDGG--------NLLISNVEPIDEGNY  185 (217)
T ss_dssp             CCCEEECTTSCEEECCBCCCEESCCEEEEEET-TEEECCCCCC---CCCSEEEETTT--------EEEESSCCSTTCEEE
T ss_pred             CCccEEcCCCeEEEEEECCCCCCCCeEEEEEC-CcCCCcccccccccCCcEEecCCC--------cEEEeeCCHHHCeEE
Confidence            445668899999999999 9999999999999 777662        2344333333        799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEEec
Q psy16261         77 KCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      +|.|.|..|.......+.+..
T Consensus       186 ~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          186 KCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEcccceeccccEEEEEE
Confidence            999999999887765554443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.36  E-value=7.3e-12  Score=93.26  Aligned_cols=75  Identities=21%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....       .        .|.|.++..+|+|.|+|.|.|..
T Consensus       313 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~i~~~~-------~--------~L~i~~v~~~d~G~Y~C~a~N~~  376 (388)
T 2v5m_A          313 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSE-------S--------VLRIESVKKEDKGMYQCFVRNDR  376 (388)
T ss_dssp             ESSEEEECTTSCEEEEEEEEEECCCEEEEEET-TEECSCCS-------S--------EEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCCcEEecCCCCEEEEEEeccccCCeEEEEEC-CEECccCC-------C--------EEEEecCChhhCEEEEEEEEcCC
Confidence            34556688999999999999999999999999 77664332       1        69999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy16261         85 GGSEGVIKVYN   95 (158)
Q Consensus        85 g~~~~~~~l~v   95 (158)
                      |.....+.|.|
T Consensus       377 G~~~~~~~l~V  387 (388)
T 2v5m_A          377 ESAEASAELKL  387 (388)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CcEEEEEEEEe
Confidence            99988888865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.36  E-value=4.5e-12  Score=94.52  Aligned_cols=84  Identities=14%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ++..+.+.+|+.+.|.|.+.| |.|.+.|+++++..+...   .++.+ ..+        .|.|.+++.+|+|.|+|.|.
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~--------~L~I~~v~~~D~G~Y~C~a~  321 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG--------DLFFKKVQVEDGGVYTCYAM  321 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT--------EEEESSCCTTSCEEEEEEEE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC--------eEEEeecCcccCEEEEEEEe
Confidence            345567899999999999999 999999999844433322   35666 444        79999999999999999999


Q ss_pred             cCCCceEEEEEEEEecc
Q psy16261         82 NTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~   98 (158)
                      |..|.....+.|.|...
T Consensus       322 N~~g~~~~~~~l~V~~~  338 (361)
T 2xot_A          322 GETFNETLSVELKVYNF  338 (361)
T ss_dssp             CSSCEEEEEEEEEEESS
T ss_pred             cCCCccEEEEEEEEEee
Confidence            99999999999988653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.36  E-value=3.4e-12  Score=92.25  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             EEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+.|.| .+.|+++ +..+..+.++.+...       .+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-g~~~~~~~~~~~~~~-------~~~L~I~~v~~~d~G~Y~C~a~N~~G~~  302 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFKDG-------ICTLLITEFSKKDAGIYEVILKDDRGKD  302 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEET-TEEEEEECCC----C-------EEEEEECSCSGGGCEEEEEEEESTTCCE
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeC-CEECCCCCcEEEECC-------EEEEEECcCCHHHCEEEEEEEEcCCCce
Confidence            568899999999999999998 9999999 887775555544422       2479999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      ...+.|.+
T Consensus       303 ~~~~~l~i  310 (312)
T 2y23_A          303 KSRLKLVD  310 (312)
T ss_dssp             EEEEEECS
T ss_pred             eeeeEEEe
Confidence            88888765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.36  E-value=1.7e-12  Score=96.53  Aligned_cols=124  Identities=16%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+..  ++. ..        ...|.|.+++.+|.|.|+|.|.|..|
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~--~~~-~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g  281 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNPVPQIKWRKL-DGSQTS--KWL-SS--------EPLLHIQNVDFEDEGTYECEAENIKG  281 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEEC-CSCCSC--CCS-BS--------SSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCEEEEEEC-Cccccc--EEe-cC--------CcEEEEccCChhhCEEEEEEEEcCCC
Confidence            3456688999999999999999999999998 443322  110 01        12699999999999999999999999


Q ss_pred             ceEEEEEEEEeccCCC------------------------CCc---------cc----------chhhhhhhcccccccc
Q psy16261         86 GSEGVIKVYNIGYFGS------------------------DTQ---------YV----------TDEEMQRTNQIARSKW  122 (158)
Q Consensus        86 ~~~~~~~l~v~~~~~~------------------------~~~---------~~----------~~~~~~~~~~~~~~~~  122 (158)
                      .....+.|.|...+..                        +..         .+          ..+.+......+.|.|
T Consensus       282 ~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  361 (382)
T 1cs6_A          282 RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY  361 (382)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEE
T ss_pred             eEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEE
Confidence            8877777766543210                        000         00          0122223334556666


Q ss_pred             cCcccceEeeeccCCceEEEEccccC
Q psy16261        123 GSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       123 g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                             .|.+.|..|....++.|.|
T Consensus       362 -------~C~a~N~~G~~~~~~~l~V  380 (382)
T 1cs6_A          362 -------QCVAENKHGTVYASAELTV  380 (382)
T ss_dssp             -------EEEEEETTEEEEEEEEEEE
T ss_pred             -------EEEEEeCCCeEEEEEEEEE
Confidence                   9999999999988888775

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.36  E-value=1.4e-11  Score=88.11  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             CceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +....+.+|+.+.|.|.+.+ .|.+.+.|+++ +..+........   ....+...+.|.|.+++.+|.|.|+|.|.|..
T Consensus       193 ~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~-~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  268 (289)
T 3ejj_X          193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRG-DTKLEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDV  268 (289)
T ss_dssp             SSSEECCSSSCEEEEEEEEESSSCCEEEEEET-TEECCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSS
T ss_pred             CCceEEEeCCcEEEEEEeCCCCCceEEEEEEC-CEEeeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCC
Confidence            33444568999999999999 78999999999 776644322111   11222234589999999999999999999999


Q ss_pred             CceEEEEEEEEeccC
Q psy16261         85 GGSEGVIKVYNIGYF   99 (158)
Q Consensus        85 g~~~~~~~l~v~~~~   99 (158)
                      |....++.|.+...+
T Consensus       269 G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          269 GTRTATMNFQVVESH  283 (289)
T ss_dssp             CEEEEEEEEECC---
T ss_pred             CCccccEEEEEEecc
Confidence            999999998876643

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.36  E-value=4.3e-12  Score=85.22  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--C----------CeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--G----------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      +.+.+.+|+.+.|.|.+.+ |.+.+.|+++ +..+..  .          .|+.+..       ..++|.|.+++.+|+|
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~R~~~~~-------~~~sL~I~~v~~~DsG   73 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDT-------VSGSLTIYNLTSSDED   73 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECT-------TTCCEEECSCCGGGCE
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeC-CcEEEEEcCCCcccccccCCcEEEeC-------CCCeEEECCCChhhCc
Confidence            4567889999999999854 8899999998 543321  1          1222210       1137999999999999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         75 TYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        75 ~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      .|.|.+.|..|  ...+.|.|...+
T Consensus        74 ~Y~C~~~n~~~--~~~~~L~V~~~~   96 (171)
T 1ccz_A           74 EYEMESPNITD--TMKFFLYVLEMV   96 (171)
T ss_dssp             EEEEECTTCCS--CEEEEEEEECCC
T ss_pred             eEEEEEeCCCC--cEEEEEEEECcC
Confidence            99999999887  556667666543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.36  E-value=3e-12  Score=92.71  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             ceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..+.+.+|+.+.|.|.+.+. |.+.+.|+++ +..+....++.....       .+.|.|.+++.+|+|.|+|.+.|..|
T Consensus        14 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~~~n~~g   85 (317)
T 2y25_A           14 LSWEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFKDG-------ICTLLITEFSKKDAGIYEVILKDDRG   85 (317)
T ss_dssp             EEEEEETTTEEEEEEEEESCCTTCEEEEEET-TEEECCSCC-----C-------CEEEEETTCCSTTCSCEEEEEESSSC
T ss_pred             eeEEECCCCeEEEEEEEcCCCCCCEEEEEEC-CeEcCCCCcEEEECC-------eEEEEEccCCcccCeEEEEEEECCCC
Confidence            34678899999999999988 7789999999 887776666554422       14799999999999999999999988


Q ss_pred             ceEEEEEEEE
Q psy16261         86 GSEGVIKVYN   95 (158)
Q Consensus        86 ~~~~~~~l~v   95 (158)
                      .....+.|.+
T Consensus        86 ~~~~~~~l~v   95 (317)
T 2y25_A           86 KDKSRLKLVD   95 (317)
T ss_dssp             EEEEEECCST
T ss_pred             cEEEEEEEEE
Confidence            7766655543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.35  E-value=1.2e-12  Score=90.41  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             CceEEEecC--CCEEEEeEEeecCCCeeEEEcC--CCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          6 SQLIGARLA--APLTLDCHVESYPKPITFWTHE--NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         6 ~~~~~~~~g--~~v~l~C~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|++.  ++..+..+.++......        .|.|.+++.+|+|.|+|.|.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~--------~l~I~~v~~~D~G~Y~C~a~   84 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK--------GFTIPSYMISYAGMVFCEAK   84 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT--------EEEEEGGGTTTCSEEEEEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc--------cEEEccCChhcCceEEEEEE
Confidence            467788899  99999999986 7789999773  36665555444443333        69999999999999999999


Q ss_pred             cCCCc
Q psy16261         82 NTLGG   86 (158)
Q Consensus        82 n~~g~   86 (158)
                      |..+.
T Consensus        85 n~~~~   89 (213)
T 2x1w_L           85 INDES   89 (213)
T ss_dssp             ----C
T ss_pred             ECCee
Confidence            85443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.35  E-value=2.1e-12  Score=92.64  Aligned_cols=84  Identities=13%  Similarity=0.031  Sum_probs=63.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPK--PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+....+.+|+.+.|.|.+.+ |.  +.+.|+++++..+....++......        .|.|.+++.+|.|.|+|.+.|
T Consensus        95 ~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~a~n  165 (292)
T 4dkd_C           95 LAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWH--------GFTIHRAKFIQSQDYQCSALM  165 (292)
T ss_dssp             SCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSS--------CCEETTCCGGGCSEEEEEECS
T ss_pred             cCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCc--------eEEECCCCHHHCeEEEEEEEe
Confidence            344567889999999999998 44  7899998755655555555444433        599999999999999999999


Q ss_pred             CCCceE-EEEEEEEec
Q psy16261         83 TLGGSE-GVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~-~~~~l~v~~   97 (158)
                      ..+... ..+.|.|..
T Consensus       166 ~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          166 GGRKVMSISIRLKVQK  181 (292)
T ss_dssp             TTSCEECCCEEEEEEC
T ss_pred             CCCceeEEEEEEEEeC
Confidence            877553 356666664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.35  E-value=8.4e-12  Score=84.04  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+.+|+.+.|.|.+.+.|.|.+.|+++ +..+       .....        .|.|.+++.+|+|.|+|.|.|..+...
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~-------~~~~~--------~L~i~~v~~~d~G~Y~C~a~n~~~~~~  170 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRSP-RGKN-------IQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKVE  170 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEECT-TSCE-------EEESS--------EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEeC-CCcc-------ccCce--------EEEEecCCcCCCeEEEEEEEECCceEE
Confidence            4578999999999999999999999999 4433       11222        699999999999999999999999989


Q ss_pred             EEEEEEEeccCC
Q psy16261         89 GVIKVYNIGYFG  100 (158)
Q Consensus        89 ~~~~l~v~~~~~  100 (158)
                      ..+.|.|.+.+.
T Consensus       171 ~~~~l~V~~~p~  182 (184)
T 2ny1_B          171 FKIDIVVLAFQK  182 (184)
T ss_dssp             EEEEEEEECCCC
T ss_pred             EEEEEEEEecCC
Confidence            999999887654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.35  E-value=7.4e-12  Score=86.66  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEc----CCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTH----ENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +....+.+|+.+.|.|.+.+.|.|.+.|++    + +..+....  ...............+.|.|.++...|+|.|+|.
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  203 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN-GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK  203 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSCCEEEEEEECCBT-TBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEE
T ss_pred             CCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCC-CccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEE
Confidence            345678899999999999999999999999    6 65554332  1222211111111123699999999999999999


Q ss_pred             EEcCCCceEEEEEEEEeccCCCCC
Q psy16261         80 AKNTLGGSEGVIKVYNIGYFGSDT  103 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v~~~~~~~~  103 (158)
                      |.|..|.....+.|.|...+..+.
T Consensus       204 a~n~~g~~~~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          204 VSNYIGQANQSAWLTVLPKQQAPG  227 (231)
T ss_dssp             EEETTEEEEEEEEEEEECCC----
T ss_pred             EEeccceEeeEEEEEEecCCCCCc
Confidence            999999999999999988765543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.34  E-value=1.5e-11  Score=89.13  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=56.3

Q ss_pred             EEEecCCCEEEEeEE------eecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          9 IGARLAAPLTLDCHV------ESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~------~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..+..|+.+.|.|.+      .|.|.|.+.|+++ +..+... .++ .....        .|.|.+++.+|+|.|+|.|.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~-~~~l~~~~~~~-~~~~~--------~L~i~~v~~~d~G~Y~C~a~  182 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKPLLLDNIHF-SGVKD--------RLIVMNVAEKHRGNYTCHAS  182 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEET-TEECCCCSSSE-EEETT--------EEEESSCCGGGCEEEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEEC-CEECCCccceE-eecCc--------eEEEEeceehhCcEEEEEEE
Confidence            457889999999998      8999999999999 7776543 333 22222        69999999999999999999


Q ss_pred             -cCCCce
Q psy16261         82 -NTLGGS   87 (158)
Q Consensus        82 -n~~g~~   87 (158)
                       |..|..
T Consensus       183 ~n~~g~~  189 (315)
T 1itb_B          183 YTYLGKQ  189 (315)
T ss_dssp             EEETTEE
T ss_pred             cCCCCcE
Confidence             788876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=8.5e-12  Score=92.28  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEee--cccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEK--FSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+|+.+.|.|.+.|.|.|.+.|+++ +..+....+.......  .+.....+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus       258 ~~~g~~v~l~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  336 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS  336 (347)
T ss_dssp             CEESSSEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CccCceEEEEEEeeecCCCcEEEEeC-CEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence            45689999999999999999999999 8777655443332111  01222345799999999999999999999999998


Q ss_pred             EEEEEEEecc
Q psy16261         89 GVIKVYNIGY   98 (158)
Q Consensus        89 ~~~~l~v~~~   98 (158)
                      ..+.|.|...
T Consensus       337 ~~~~l~V~~~  346 (347)
T 2ifg_A          337 ASIMAAFMDN  346 (347)
T ss_dssp             EEEEECSCCC
T ss_pred             eEEEEEecCC
Confidence            8888877654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.34  E-value=3.2e-11  Score=98.01  Aligned_cols=93  Identities=26%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.............+.|.|.++..+|+|.|+|.|.|..|
T Consensus       436 ~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  514 (816)
T 3dmk_A          436 FQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG  514 (816)
T ss_dssp             CCCEEECSSSCEEEEEEEECSSCCEEEEEET-TEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTE
T ss_pred             CcceEEcCCCCEEEEEEEecCCCCEEEEEEC-CEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCC
Confidence            3345678899999999999999999999999 887776666654332111222345799999999999999999999999


Q ss_pred             ceEEEEEEEEeccC
Q psy16261         86 GSEGVIKVYNIGYF   99 (158)
Q Consensus        86 ~~~~~~~l~v~~~~   99 (158)
                      .......|.|...+
T Consensus       515 ~~~~~~~l~V~~~p  528 (816)
T 3dmk_A          515 VAEHSAKLNVYGLP  528 (816)
T ss_dssp             EEEEEEEEEECSSC
T ss_pred             eEEEEEEEEEecCC
Confidence            98888888876543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.34  E-value=8.3e-12  Score=92.56  Aligned_cols=90  Identities=7%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             ceEEEecCCCEEEEeEEee-----cCCCeeEEEcCCCeeeec--------CCeEEEEEeeccc-----ceEEEEEEEcCC
Q psy16261          7 QLIGARLAAPLTLDCHVES-----YPKPITFWTHENGSLIHE--------GSRYHMWTEKFSS-----YKFYMRLYIGSL   68 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g-----~p~p~i~W~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~l~i~~v   68 (158)
                      ..+.+.+|+.+.|.|.+.+     .|.|.+.|+++ +..+..        +.++.+.....+.     ......|.|.++
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  262 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE-RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA  262 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEES-SCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSB
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecC-CCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccC
Confidence            4456788999999998888     78899999999 665544        3444443211000     000127999999


Q ss_pred             CCCCCeEEEEEEEcC--CCceEEEEEEEEec
Q psy16261         69 SKSDFGTYKCNAKNT--LGGSEGVIKVYNIG   97 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~   97 (158)
                      +.+|+|.|+|.|.|.  .|.....+.|.|..
T Consensus       263 ~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~  293 (363)
T 1wio_A          263 LPQYAGSGNLTLALEAKTGKLHQEVNLVVMR  293 (363)
T ss_dssp             CGGGCEEEEEEECBTTTTCCEEEEEEEEEEE
T ss_pred             CcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE
Confidence            999999999999999  99888887777654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.33  E-value=1.2e-11  Score=92.34  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC---eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS---RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....   +... ...        .|.|.++..+|+|.|+|.|.
T Consensus       318 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~-~~~--------~L~i~~v~~~d~G~Y~C~a~  387 (404)
T 3p3y_A          318 EPKNLILAPGEDGRLVCRANGNPKPTVQWMVN-GEPLQSAPPNPNREV-AGD--------TIIFRDTQISSRAVYQCNTS  387 (404)
T ss_dssp             CCCCEEECTTCCEEEECEEEEESCCEEEEEET-TEEGGGSCCCTTEEE-ETT--------EEEESSCCSSCCCEEEEEEE
T ss_pred             cCCcceeecCCcEEEEEEccccCCCceEEEEC-CEecCCCCCCceEEe-cCC--------EEEEeecCHHHCEEEEEEEE
Confidence            44556688899999999999999999999999 77765442   2221 222        69999999999999999999


Q ss_pred             cCCCceEEEEEEEEec
Q psy16261         82 NTLGGSEGVIKVYNIG   97 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~   97 (158)
                      |..|.....+.|.|.+
T Consensus       388 N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          388 NEHGYLLANAFVSVLD  403 (404)
T ss_dssp             ETTEEEEEEEEEEEC-
T ss_pred             eCCCcEEEEEEEEEEe
Confidence            9999999888887754

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.33  E-value=6.5e-12  Score=90.19  Aligned_cols=81  Identities=7%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             CceEEEecCCCEEEEeEEeecCC-CeeEE-EcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK-PITFW-THENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~-p~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n   82 (158)
                      +..+.+.+|+.+.|.|.+.+ |. +.+.| .++ +..+....++......        .|.|.+++.+|.| .|+|.|.|
T Consensus        98 ~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~-g~~l~~~~~~~~~~~~--------~L~i~~v~~~d~G~~Y~C~a~n  167 (290)
T 2o26_X           98 GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECD-GKSLPTDLTFVPNPKA--------GITIKNVKRAYHRLCVRCAAQR  167 (290)
T ss_dssp             CCCEEEETTSCEEECCCBSC-CSCEEEEEEETT-SCCCCTTCEEEEETTT--------EEEEESCCGGGTTCEEEEEEEE
T ss_pred             ccceEEecCCeEEEeCcCCC-CCCceEEEEeCC-CcCCCCCCceeeCCCC--------CEEEecccHHHCCCEEEEEEEE
Confidence            44566789999999999996 77 89999 566 7777766666555444        6999999999999 99999999


Q ss_pred             CCCceE-EEEEEEEe
Q psy16261         83 TLGGSE-GVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~-~~~~l~v~   96 (158)
                      ..+... ..+.|.|.
T Consensus       168 ~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          168 DGTWLHSDKFTLKVR  182 (290)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCceEEeEEEEEEEE
Confidence            855432 24566554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.32  E-value=1.1e-12  Score=87.98  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=56.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+ .+.|+++ +..+...       .        +.|.|.+++.+|+|.|+|.+
T Consensus         7 i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~-~~~~~~~-------~--------~~L~i~~v~~~d~G~Y~C~~   70 (176)
T 1f2q_A            7 VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEET-------N--------SSLNIVNAKFEDSGEYKCQH   70 (176)
T ss_dssp             CEEESSCSEEETTCCEEEECCTTCC----CCEEEET-TEECSCC-------S--------SEEEECSCCGGGCEEEEEEC
T ss_pred             EEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEEC-CeECCCC-------c--------eEEEEeccceecCEEEEEEc
Confidence            4455666678999999999999998886 6999999 7665432       1        16999999999999999999


Q ss_pred             EcCCCceEEEEE
Q psy16261         81 KNTLGGSEGVIK   92 (158)
Q Consensus        81 ~n~~g~~~~~~~   92 (158)
                      .|..+.....+.
T Consensus        71 ~~~~~s~~~~l~   82 (176)
T 1f2q_A           71 QQVNESEPVYLE   82 (176)
T ss_dssp             TTSSCCCCEEEE
T ss_pred             CCccccccEEEE
Confidence            997765544333

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.32  E-value=7.6e-12  Score=84.59  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=56.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.. .+.+|+++.|.|.+.+ +.+.+.|+|+ +...       .....        .|.|.+++.+|+|.|+|.+.|
T Consensus        12 ~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~-g~~~-------~~~~~--------~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A           12 QALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKL-SSSR-------YQDQA--------VLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             EEESCS-EEETTCCEEEEEECST-TCSEEEEEET-TTCC-------EESSS--------EEEESSCCGGGCEEEEEEEEE
T ss_pred             EeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEEC-Cccc-------cCccc--------EEEECcCChhhCceEEEEEEc
Confidence            344444 5889999999999988 7889999999 5431       11112        699999999999999999999


Q ss_pred             CCCce--EEEEEEEEec
Q psy16261         83 TLGGS--EGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~--~~~~~l~v~~   97 (158)
                      ..|..  +..+.|.|..
T Consensus        74 ~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATG   90 (184)
T ss_dssp             TTEEBCCCCCEEEEEES
T ss_pred             CCCccCCCCCEEEEecC
Confidence            87632  3345555543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.32  E-value=1.1e-11  Score=91.21  Aligned_cols=80  Identities=18%  Similarity=0.083  Sum_probs=61.0

Q ss_pred             eEEEecCCCEEEEeEE-----eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          8 LIGARLAAPLTLDCHV-----ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.+|+.+.|.|.+     .|.|.|.+.|+++ +..+....++.... .        .|.|.+++.+|+|.|+|.|.|
T Consensus       129 ~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~-~~~l~~~~~~~~~~-~--------~L~i~~v~~~d~G~Y~C~a~n  198 (349)
T 4dep_C          129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMG-CYKIQNFNNVIPEG-M--------NLSFLIALISNNGNYTCVVTY  198 (349)
T ss_dssp             EEEETTCSEEEEECCSCTTSSCTTSCCEEEEEET-TEECCSCSSEEEET-T--------EEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeecCccEEEEcCCCcccccCCCCceEEEeeC-CEECCCccceeecC-C--------EEEEeeeeecCCcEEEEEEEE
Confidence            4457789999999985     7889999999999 77775443332221 2        699999999999999999999


Q ss_pred             CC-Cce---EEEEEEEEec
Q psy16261         83 TL-GGS---EGVIKVYNIG   97 (158)
Q Consensus        83 ~~-g~~---~~~~~l~v~~   97 (158)
                      .. |..   ...+.|.|..
T Consensus       199 ~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          199 PENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             EETTEEEEEEEEEEEEEEC
T ss_pred             eeCCEEEEEEEEEEEEEEc
Confidence            87 443   4556666643

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.32  E-value=9.3e-12  Score=86.20  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+.....      .        .|.|.++..+|.|.|+|.|.|..
T Consensus       124 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~-~~~~~~~~~------~--------~L~i~~v~~~d~G~Y~C~a~n~~  188 (218)
T 3k0w_A          124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-ELPLTHETK------K--------LYMVPYVDLEHQGTYWCHVYNDR  188 (218)
T ss_dssp             CCCCEEECTTCCEEEECEEEBSSCCEEEEEET-TEECTTCCS------S--------EEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCCceeecCCCcEEEEEEecccCCCeEEEEEC-CEECCCCCC------C--------EEEEeecChhcCEEEEEEEEcCC
Confidence            34456788999999999999999999999999 776654322      1        69999999999999999999998


Q ss_pred             Cce-EEEEEEEEecc
Q psy16261         85 GGS-EGVIKVYNIGY   98 (158)
Q Consensus        85 g~~-~~~~~l~v~~~   98 (158)
                      |.. +..+.|.|...
T Consensus       189 g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          189 DSQDSKKVEIIIDEL  203 (218)
T ss_dssp             CEEECCCEEEEECC-
T ss_pred             CCceeeeEEEEEeCC
Confidence            874 55677777653

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.32  E-value=9e-12  Score=90.37  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEE-----EEeec--ccceEEEEEEEcCCCCCC-CeEEEEEE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM-----WTEKF--SSYKFYMRLYIGSLSKSD-FGTYKCNA   80 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~l~i~~v~~~d-~G~Y~C~a   80 (158)
                      +.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+...     .....  ......+.|.|.++..+| +|.|+|.|
T Consensus       219 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  297 (315)
T 1itb_B          219 MEVDLGSQIQLICNVTGQLSDIAYWKWN-GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA  297 (315)
T ss_dssp             EECCSSSCEEEEEEEEECTTSEEEEEET-TEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEE
T ss_pred             EEEeCCCcEEEEEEEecCCCCeeEEEEC-CEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEE
Confidence            4678899999999999999999999999 877765432111     11100  011234579999999999 99999999


Q ss_pred             EcCCCceEEEEEEEEe
Q psy16261         81 KNTLGGSEGVIKVYNI   96 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~   96 (158)
                      .|..|.....+.|.|.
T Consensus       298 ~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          298 KNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             ECTTCCEEEEEEEECC
T ss_pred             ecCCCceeEEEEEEec
Confidence            9999999998888764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.31  E-value=6.8e-12  Score=84.67  Aligned_cols=82  Identities=21%  Similarity=0.352  Sum_probs=63.3

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..  ..++.....+        .|.|.+++.+|+|.|+|.|.|
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~d~G~Y~C~a~n  176 (191)
T 1epf_A          106 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDVRFIVLSNN--------YLQIRGIKKTDEGTYRCEGRI  176 (191)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEET-TEEGGGGCCTTEEECTTS--------CEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCcEeecCCCeEEEEEEECCCCCCEEEEEEC-CEEeeccCCceEEEecCC--------eEEECCCChhhCEEEEEEEEE
Confidence            34455678899999999999999999999999 776643  2355444333        699999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy16261         83 TLGGSEGVIKVYN   95 (158)
Q Consensus        83 ~~g~~~~~~~l~v   95 (158)
                      ..+.......+.|
T Consensus       177 ~~~~~~~~~~i~v  189 (191)
T 1epf_A          177 LARGEINFKDIQV  189 (191)
T ss_dssp             GGGTEEEEEEEEE
T ss_pred             ecceeEEEEEEEE
Confidence            9866554444433

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.31  E-value=5.4e-12  Score=85.57  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             cCceEEEecCCCEEEEeE-EeecCC-CeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCH-VESYPK-PITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~-~~g~p~-p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ++..+.+.+|+.+.|.|. +.+.|. +.+.|+++ +..+.  ...+.......       +.|.|.+++.+|+|.|+|.+
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~-~~~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN-EFPVFITMDKRRFVSQTN-------GNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEES-STTCBCCCSSSEEECTTT-------CCEEESSCCGGGCEEEEEEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEEC-CceeeeeeCCCeEEEcCC-------CeEEECcCCcccCeEEEEEE
Confidence            346678999999999999 899998 99999999 55443  12222222111       26999999999999999999


Q ss_pred             EcCCCceE
Q psy16261         81 KNTLGGSE   88 (158)
Q Consensus        81 ~n~~g~~~   88 (158)
                      .|..+...
T Consensus        86 ~~~~~~~~   93 (201)
T 3s97_C           86 SSPSITKS   93 (201)
T ss_dssp             EEGGGTEE
T ss_pred             EecCCCcc
Confidence            99765543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.31  E-value=9.8e-12  Score=98.53  Aligned_cols=125  Identities=10%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+.+|+.+.|.|.+.+ |.+.+.|+++ +..+....++.+....       +.|.|.+++..|+|.|+|.|.|..|...
T Consensus       477 ~~v~~g~~v~l~C~~~~-~~~~i~W~~~-g~~l~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          477 KPVEDKDAVAFTCEPEA-QNTTYLWWVN-GQSLPVSPRLQLSNGN-------RTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             eeecCCCeEEEEEECCC-CCcEEEEEEC-CEeCCCCCcEEEcCCC-------cEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            44678999999999994 8889999999 8887777766654322       3799999999999999999999999753


Q ss_pred             E-EEEEEEeccCCCCCc----------------------------------cc---chhhhhhhcccccccccCcccceE
Q psy16261         89 G-VIKVYNIGYFGSDTQ----------------------------------YV---TDEEMQRTNQIARSKWGSERTNQI  130 (158)
Q Consensus        89 ~-~~~l~v~~~~~~~~~----------------------------------~~---~~~~~~~~~~~~~~~~g~~~~~~~  130 (158)
                      . .+.|.|...|..+..                                  .+   ..+.+......+.|.|       .
T Consensus       548 s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y-------~  620 (642)
T 1e07_A          548 SDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTY-------A  620 (642)
T ss_pred             CCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCeEE-------E
Confidence            3 566666543321100                                  00   0122233344556666       9


Q ss_pred             eeeccCCceEEEEccccCC
Q psy16261        131 ARSKWGSGYRYTSGPIRLP  149 (158)
Q Consensus       131 ~~~~~~~g~~~~~~~~~~~  149 (158)
                      |.+.|..|....++.+.|.
T Consensus       621 C~a~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          621 CFVSNLATGRNNSIVKSIT  639 (642)
T ss_pred             EEEEecccCcceeEEEEEE
Confidence            9999999999888887763

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.31  E-value=8.9e-12  Score=88.44  Aligned_cols=91  Identities=13%  Similarity=0.279  Sum_probs=59.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEe---ecCCCeeEEEcCCCeeeec------------------CCeEEEEEeecccceEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVE---SYPKPITFWTHENGSLIHE------------------GSRYHMWTEKFSSYKFY   60 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~---g~p~p~i~W~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~   60 (158)
                      +.+++..+.+.+|+.+.|.|.+.   +.+.+.+.|+++ +.....                  ..++.+...   .....
T Consensus         8 v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~   83 (268)
T 3mj6_A            8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFS-KDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD---TFHND   83 (268)
T ss_dssp             ----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEE-SSSTTCCEEEEEEETTEEEECGGGTTTEEECSC---TTTTB
T ss_pred             cccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEe-CCCCCceEEEEEEcCCCcccCccccCceEEeec---CCCCE
Confidence            34567778899999999999998   777889999997 321110                  122222110   00011


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCCce--EEEEEEEEe
Q psy16261         61 MRLYIGSLSKSDFGTYKCNAKNTLGGS--EGVIKVYNI   96 (158)
Q Consensus        61 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~   96 (158)
                      ++|.|.+++.+|+|.|+|.+.|..+..  ...+.|.|.
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            369999999999999999999876554  334555543

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.31  E-value=8.8e-12  Score=78.12  Aligned_cols=86  Identities=14%  Similarity=0.045  Sum_probs=63.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee----------------e---cCCeEEEEEeecccceEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI----------------H---EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++.+....+.+|+++.|.|.......+.+.|+|+ ....                .   ..+|..+..++        +|
T Consensus         4 ~i~~~p~~~~~G~~v~L~~~~~p~~~~~i~W~kg-~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng--------SL   74 (111)
T 2qsq_A            4 TIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKG-ERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA--------SL   74 (111)
T ss_dssp             EEEEESSEEETTSCEEEEEESCCSSEEEEEEEES-SSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS--------CE
T ss_pred             EEEeccceeccCCCEEEEEeCCCCCceEEEEEeC-CCCCCCcEEEEEECCCcceecCcccCCcEEEecCC--------cE
Confidence            4555555789999999999864444457899987 3211                0   13566665555        89


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC-ceEEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG-GSEGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..
T Consensus        75 ~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           75 LIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             EEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            9999999999999999999866 457777887764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=2.7e-12  Score=98.28  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=67.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ..+....+.+|+.+.|.|.+.  |.|.+.|+++++..+...   .++.+...+        +|.|.+++.+|+|.|+|.|
T Consensus       357 ~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g--------~L~i~~v~~~D~G~Y~C~a  426 (452)
T 3zyi_A          357 DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG--------TLNFSHVLLSDTGVYTCMV  426 (452)
T ss_dssp             BCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTS--------CEECSSCCTTCCEEEEEEE
T ss_pred             cccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCC--------eEEEeecCHHHCEEEEEEE
Confidence            345667789999999999998  999999999746555432   345444444        6999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccCCC
Q psy16261         81 KNTLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~~~~  101 (158)
                      .|..|...+.+.|.|.+.+..
T Consensus       427 ~N~~G~~~~~~~l~v~~~~~~  447 (452)
T 3zyi_A          427 TNVAGNSNASAYLNVSTAGTH  447 (452)
T ss_dssp             ECSSCEEEEEEEEEC------
T ss_pred             EcCCCcEEEEEEEEEEccccc
Confidence            999999999999988776543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.30  E-value=1.3e-11  Score=84.65  Aligned_cols=84  Identities=18%  Similarity=0.299  Sum_probs=55.3

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCe---eEEEcCCCeeeec---------------CCeEEEEEee--cccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPI---TFWTHENGSLIHE---------------GSRYHMWTEK--FSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~---i~W~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+++.|.|.+.+.+.+.   +.|+|+++..+..               ..+.......  .......++|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3457789999999999999887764   7899984433211               0111111000  000111236999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .+++.+|+|.|.|.+.|..+....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCccee
Confidence            999999999999999998775543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.30  E-value=3.2e-12  Score=93.76  Aligned_cols=86  Identities=17%  Similarity=0.204  Sum_probs=68.0

Q ss_pred             eecCceEEEecCCCEEEEeEEe-------ecCCCeeEEEcCCCee--eecC--CeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVE-------SYPKPITFWTHENGSL--IHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~-------g~p~p~i~W~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      ...+..+.+.+|+.+.|.|.+.       +.|.+.+.|+++ +..  +...  .++.. ...        .|.|.+++.+
T Consensus        22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~-~~~--------~L~i~~v~~~   91 (339)
T 3o4o_C           22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKN-DSARTVPGEEETRMWA-QDG--------ALWLLPALQE   91 (339)
T ss_dssp             EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEES-SCCSCCSCCSSSCEEE-ETT--------EEEESSBCTT
T ss_pred             CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEEC-CCCcccCccccccEEe-eCC--------eEEECCCCcc
Confidence            3456777899999999999998       889999999999 654  2222  23332 222        6999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         72 DFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      |+|.|+|.+.|..|.....+.|.|...
T Consensus        92 D~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           92 DSGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             CCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             cCEEEEEEEECCcceEEEEEEEEEEcC
Confidence            999999999999988877887777654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.30  E-value=5e-11  Score=73.93  Aligned_cols=78  Identities=23%  Similarity=0.363  Sum_probs=57.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +..+|..+.+.+|+++.|.|.+.+.|.+.+.|++.. +.   .+.         ...|+.+....     ...+|.|.++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-----TDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-----SEEEEEECSC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecC-----CEEEEEECCC
Confidence            345567778999999999999999988999999862 11   111         12455544321     1247999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+.|..
T Consensus        79 ~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           79 EPEDFAMYICQQHNEY   94 (108)
T ss_dssp             CTTCCSEEEEEECSSS
T ss_pred             CHHHCEEEEEEEccCC
Confidence            9999999999999874

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.30  E-value=1.4e-11  Score=83.72  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             CceEEEecCCCEEEEeEEe--ecCCCeeEEEc--CCCeee----------ecCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVE--SYPKPITFWTH--ENGSLI----------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~--g~p~p~i~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      .+.+...+|+.+.|.|...  +.+.+.+.|++  + +..+          ....|+.+...+        +|.|.+++.+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~-~~~i~~~~~~~~~~~~~~R~~~~~ng--------sL~I~~v~~~   76 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSD-KKKIAQFRKEKETFKEKDTYKLFKNG--------TLKIKHLKTD   76 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGG-CCEEEEECGGGCEEESCTTEEECTTS--------CEEECSCCGG
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCC-CcEEEEEeCccCCCCCCCeEEECCCC--------CEEECCCChh
Confidence            4567788999999999553  35567999999  7 5554          234566665444        7999999999


Q ss_pred             CCeEEEEEEEcCCCceE--EEEEEEEecc
Q psy16261         72 DFGTYKCNAKNTLGGSE--GVIKVYNIGY   98 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~--~~~~l~v~~~   98 (158)
                      |+|.|+|.+.|..|...  ..+.|.|...
T Consensus        77 DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           77 DQDIYKVSIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             GCEEEEEEEEETTSCEEEEEEEEEEEECC
T ss_pred             hCEEEEEEEEeCCCceeEEEEEEEEEcCc
Confidence            99999999999988763  4566766653

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.29  E-value=9.2e-11  Score=75.84  Aligned_cols=94  Identities=18%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCC---CeeEEEcCCCe-ee--e-------------cCCeEEEEEeecccceEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPK---PITFWTHENGS-LI--H-------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~-~~--~-------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..++..+.+.+|+++.|.|.+.+.+.   +.+.|++++.. .+  .             ...|+.+....  ......+|
T Consensus        10 ~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL   87 (139)
T 1pko_A           10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES--IGEGKVAL   87 (139)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTT--GGGTEEEE
T ss_pred             ECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEcccc--ccCCeEEE
Confidence            34566788999999999999987553   68999998321 11  0             01344433210  01113479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      .|.+++.+|+|.|.|.+.|..|.....+.|.|..+
T Consensus        88 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P  122 (139)
T 1pko_A           88 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  122 (139)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence            99999999999999999999887788888888743

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.29  E-value=1.3e-10  Score=83.82  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             eEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ...+.+|+.+.|.|.+. +.|.+.+.|+++ +..+....++.+.......   ...|.|.+++.+|+|.|+|.+.|..+.
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~  191 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNTG---IIEMFMEKLQDEDEGTYTFQLQDGKAT  191 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEET-TEEECSSSSCEEEEETTTT---EEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEEC-CEECeeCCcEEEEEccCCC---EEEEEEccCCcccCEeEEEEEEeCCce
Confidence            56688999999999999 899999999999 8888777766665442111   246999999999999999999875444


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus       192 ~  192 (312)
T 2y23_A          192 N  192 (312)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.28  E-value=7.3e-12  Score=87.85  Aligned_cols=87  Identities=11%  Similarity=0.197  Sum_probs=57.6

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEe-----------ecccce---EEEEEEEcCCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTE-----------KFSSYK---FYMRLYIGSLSK   70 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~-----------~~~~~~---~~~~l~i~~v~~   70 (158)
                      ..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+....  .......           ......   ....|.|.+++.
T Consensus       144 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  222 (250)
T 2fbo_J          144 EVVQVDEGNDITMTCPCTDCANANVTWYTG-PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKI  222 (250)
T ss_dssp             SEEECCTTCCEEECCCEESCTTCEEEEEEE-EECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCG
T ss_pred             ceEEecCCCcEEEEEEecCCCCCeeEEEeC-CCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCc
Confidence            345566799999999999999999999999 66554321  1000000           000000   013799999999


Q ss_pred             CCCeEEEEEEEcCCC---ceEEEEEEE
Q psy16261         71 SDFGTYKCNAKNTLG---GSEGVIKVY   94 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g---~~~~~~~l~   94 (158)
                      +|+|.|+|.|.|.+|   .....+.|.
T Consensus       223 ~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          223 TDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             GGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             ccCEEEEEEecCCccccCccceeEEEe
Confidence            999999999999555   444455543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.28  E-value=5.5e-11  Score=81.66  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--Cee--ee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--GSL--IH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+.++ .+.+.+|+.+.|.|.+.+.|.+.+.|++..  ...  +.         ...|+.+....     ..++|.|.++
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   77 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSG-----NMATLTISKA   77 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecC-----CEEEEEECCC
Confidence            34456 788999999999999999999999999831  111  11         22455544322     1347999999


Q ss_pred             CCCCCeEEEEEEEcCCC---ceEEEEEEEEecc
Q psy16261         69 SKSDFGTYKCNAKNTLG---GSEGVIKVYNIGY   98 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g---~~~~~~~l~v~~~   98 (158)
                      +.+|+|.|.|.+.|..+   .....+.|.|...
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~  110 (213)
T 3mj8_L           78 QAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQ  110 (213)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEBCCEEEEEECS
T ss_pred             ChhhCEEEEEEeccCCcceeEEcCceEEEEeCC
Confidence            99999999999999988   3344567777643

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.28  E-value=2.1e-11  Score=78.72  Aligned_cols=90  Identities=16%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---e-eecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---L-IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      |...+..+.+.+|+.+.|.|.+.+.  +.+.|+++. +.   . +....|+.+...+ .    ..+|.|.+++.+|+|.|
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~-~----~~~L~I~~~~~~DsG~Y   92 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNG-S----VYTLTIQNIQYEDNGIY   92 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEET-T----EEEEEECSCCGGGCEEE
T ss_pred             eEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCC-C----EEEEEECCCChHHCEEE
Confidence            3445677789999999999999987  899999872 11   1 1234677665433 1    24799999999999999


Q ss_pred             EEEEEcCCCc----eEEEEEEEEecc
Q psy16261         77 KCNAKNTLGG----SEGVIKVYNIGY   98 (158)
Q Consensus        77 ~C~a~n~~g~----~~~~~~l~v~~~   98 (158)
                      .|.+.|..|.    ....+.|.|...
T Consensus        93 ~C~a~n~~g~~~~~~g~gt~L~V~~~  118 (133)
T 3khq_A           93 FCKQKCDSANHNVTDSCGTELLVLGF  118 (133)
T ss_dssp             EEEESSCC-------CCCEEEEEC--
T ss_pred             EEEEEeCCCCcceeECCCEEEEEEec
Confidence            9999998763    233467777663

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.28  E-value=8.8e-12  Score=85.21  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE-
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG-   89 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-   89 (158)
                      +.+|+.+.|.|.+.+.| |.+.|+++ +..+....++.+....       +.|.|.++..+|+|.|+|.|.|..|.... 
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~-g~~l~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~  192 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFN-SQSLQLTERMTLSQNN-------SILRIDPIKREDAGEYQCEISNPVSVRRSN  192 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEET-TEECCCCSSEEEETTT-------TEEEESSCCGGGCEEEEEEEECTTCCEECC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEEC-CEeCCCCCCeEEcCCC-------CEEEEeccCHHhCeEEEEEEecCCCcccCC
Confidence            56799999999999976 89999999 8888777776655432       27999999999999999999999998744 


Q ss_pred             EEEEEEeccC
Q psy16261         90 VIKVYNIGYF   99 (158)
Q Consensus        90 ~~~l~v~~~~   99 (158)
                      .+.|.|...+
T Consensus       193 ~~~l~v~~~~  202 (208)
T 3r4d_A          193 SIKLDIIFDP  202 (208)
T ss_dssp             CEEECCC---
T ss_pred             ceeeeEEeCC
Confidence            5666655543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.27  E-value=2.3e-11  Score=82.47  Aligned_cols=78  Identities=15%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+....+.+|+.+.|.|.+.|.|.| .+.|+++ +..+......  ..        .+.|.|.+++  |+|.|+|.|.|.
T Consensus       112 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~-~~~~~~~~~~--~~--------~~~L~i~~~~--d~G~Y~C~a~N~  178 (195)
T 2c5d_C          112 EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-AVPLATAPGH--GP--------QRSLHVPGLN--KTSSFSCEAHNA  178 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSCCCEEEEEES-SCBSSSSTTS--SC--------CEEEEECCCS--SCEEEEEEEEET
T ss_pred             CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEEC-CEeccCCCCc--CC--------CCeEEEcccc--cCceEEEEEEcC
Confidence            3445668889999999999999999 9999999 7666544322  11        2369999987  789999999999


Q ss_pred             CCceE-EEEEEEE
Q psy16261         84 LGGSE-GVIKVYN   95 (158)
Q Consensus        84 ~g~~~-~~~~l~v   95 (158)
                      .|... ..+.|.|
T Consensus       179 ~g~~~s~~~~l~V  191 (195)
T 2c5d_C          179 KGVTTSRTATITV  191 (195)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCceEEEEEEEEE
Confidence            99885 6788877

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.27  E-value=2.3e-12  Score=88.11  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             EecCCCEEEEeEE-eecCCCeeEEEcCC-CeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHV-ESYPKPITFWTHEN-GSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~-~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+|+.+.|.|.+ .+.|.|.+.|++++ +..+.....+ ....        ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus       133 ~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~-~~~~--------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~  203 (214)
T 3jz7_A          133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-EMTS--------PVISVKNASSEYSGTYSCTVQNRVGSDQ  203 (214)
T ss_dssp             CBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG-GTTS--------SEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             eecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee-ccCC--------CEEEEecCCHHHCEEEEEEEEcCCCcEE
Confidence            5679999999999 89999999999962 2222221111 0011        1699999999999999999999999998


Q ss_pred             EEEEEEEec
Q psy16261         89 GVIKVYNIG   97 (158)
Q Consensus        89 ~~~~l~v~~   97 (158)
                      ..+.|.|..
T Consensus       204 ~~~~l~V~~  212 (214)
T 3jz7_A          204 CMLRLDVVP  212 (214)
T ss_dssp             EEEEECCBC
T ss_pred             EEEEEEEeC
Confidence            888887764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.27  E-value=3.2e-11  Score=83.26  Aligned_cols=87  Identities=17%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             EEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         10 GARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        10 ~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .+.+|+.+.|.|.+ .+.|.|.+.|+++++..+.............+.+   +.|.|.++..+|.|.|+|.|.|..|...
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLF---DVHSVLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCE---EEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeE---EEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence            46689999999999 8899999999995465554322222222221222   3578999999999999999999999999


Q ss_pred             EEEEEEEeccC
Q psy16261         89 GVIKVYNIGYF   99 (158)
Q Consensus        89 ~~~~l~v~~~~   99 (158)
                      ..+.|.|...|
T Consensus       198 ~~~~l~V~~~p  208 (222)
T 4i0k_A          198 AHGSVTITGQP  208 (222)
T ss_dssp             EEEEEECCC--
T ss_pred             eEEEEEEeCCc
Confidence            99999887765

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.27  E-value=4.7e-11  Score=87.52  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             EecCCCEEEEeEEeecC-CCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC--CCc
Q psy16261         11 ARLAAPLTLDCHVESYP-KPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT--LGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~--~g~   86 (158)
                      +.+|+.+.|.|.+.|.| .|.+.|+++ +..+. ...++... ..        .|.|.+++.+|+|.|+|.|.|.  .|.
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~-~~~l~~~~~~~~~~-~~--------~L~I~~v~~~D~G~Y~C~a~n~~~~g~  209 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYKN-NQELIIDGTKYSQS-GQ--------NLIIHNPELEDSGRYDCYVHYDDVRIK  209 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEET-TEECCCSSSSEEEE-TT--------EEEECSCCGGGCEEEEEEEEECCTTSS
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEEC-CccCCCCCceEecC-CC--------EEEEeecChhhCEEEEEEEEecccCCC
Confidence            34699999999999999 899999999 76664 33455444 33        7999999999999999999997  665


Q ss_pred             eEEE----EEEEEecc
Q psy16261         87 SEGV----IKVYNIGY   98 (158)
Q Consensus        87 ~~~~----~~l~v~~~   98 (158)
                      ....    +.|.|...
T Consensus       210 ~~~~~s~~~~l~V~~~  225 (329)
T 3oq3_B          210 NDIVVSRCKILTVIPS  225 (329)
T ss_dssp             SCEEEEEEEEEEEECC
T ss_pred             ceeEEEeeEEEEEECC
Confidence            4333    55666543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.27  E-value=2.9e-11  Score=75.56  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCe----eEEEcCCCee----e---------ecCCeEEEEEeecccceEEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPI----TFWTHENGSL----I---------HEGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~----i~W~~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +..+.+.+|+++.|.|.+ .+.+.+.    +.|++. +..    +         ....|+.+............+|.|.+
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARH-GESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEET-TCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECS
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEc-CCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEee
Confidence            334789999999999999 4444444    899987 321    1         01223333221000000023799999


Q ss_pred             CCCCCCeEEEEEEEc-CCCceEEEEEEEEecc
Q psy16261         68 LSKSDFGTYKCNAKN-TLGGSEGVIKVYNIGY   98 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~   98 (158)
                      ++.+|+|.|.|.+.+ ..|.....+.|.|...
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~  117 (118)
T 3udw_C           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK  117 (118)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             cChHHCeEEEEEEEECCCCCccceEEEEEEeC
Confidence            999999999999999 7777777888887654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.27  E-value=8.7e-12  Score=84.60  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=53.4

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcC-CCCCCCeEEEEEEEcCCCceE
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGS-LSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ....|+.+.|.|.+.+ +. .+.|+|+ +..+....      ..        .|.|.+ ++.+|+|.|+|.|.|..|...
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~-g~~l~~~~------~~--------~L~I~~~~~~~D~G~Y~C~a~n~~g~~~   72 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKN-GQELPQKH------DK--------HLVLQDFSEVEDSGYYVCYTPASNKNTY   72 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEET-TEEECSCC------CS--------EEEEESCCTTTSCEEEEEECSSCCCCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEEC-CEECCCCC------CC--------EEEECCCCccccCEEEEEEEEeCCCcEE
Confidence            3578999999999988 44 4999999 77765431      11        699999 999999999999999988755


Q ss_pred             EEEEEE
Q psy16261         89 GVIKVY   94 (158)
Q Consensus        89 ~~~~l~   94 (158)
                      ..+.+.
T Consensus        73 ~~~~~~   78 (186)
T 1jbj_A           73 LYLKAR   78 (186)
T ss_dssp             EEECCC
T ss_pred             EEEEEE
Confidence            444443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.27  E-value=1.4e-11  Score=83.97  Aligned_cols=86  Identities=19%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.. .+.+|+++.|.|.+.+.|. .+.|+|+ +..+....+.  ...    ....+.|.|.+++.+|+|.|+|.+.|
T Consensus         9 ~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~-g~~~~~~~~~--~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            9 WAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKE-GSPEPWDTQN--PLE----PKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             EEESCS-EEETTCCEEEEEECCTTCC-EEEEEET-TCSSCSEEEC--CCS----STTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEEC-CCCCCccccc--ccC----CccccEEEeccCChhHCeEEEEEEeC
Confidence            344443 5889999999999988765 9999999 6544321100  000    01124799999999999999999999


Q ss_pred             CCCce--EEEEEEEEec
Q psy16261         83 TLGGS--EGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~--~~~~~l~v~~   97 (158)
                      ..|..  +..+.|.|..
T Consensus        80 ~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             TTEECBCCCCEEEEEEC
T ss_pred             CCCcCCcCccEEEEecC
Confidence            87643  3345566554

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.27  E-value=4.3e-11  Score=87.26  Aligned_cols=138  Identities=9%  Similarity=0.049  Sum_probs=87.2

Q ss_pred             CceEEEecC---CCEEEEeE-EeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          6 SQLIGARLA---APLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         6 ~~~~~~~~g---~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +..+.+.+|   +.+.|.|. +.+.|.|.+.|+++ .......   .........+...+.|.|..+...|.|.|+|.|.
T Consensus       139 ~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~-~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  214 (331)
T 3u83_A          139 QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR-LKGEAEY---QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN  214 (331)
T ss_dssp             SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES-SCCEEEE---EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             CCceeecCCCccceEEEEEEecCCcCCceEEEEcC-CCCcccc---ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEe
Confidence            344556778   67999998 88999999999986 2211110   1111111233344579999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccCC------C-------------------CCcc-c-----------------chhhhh-hhccc
Q psy16261         82 NTLGGSEGVIKVYNIGYFG------S-------------------DTQY-V-----------------TDEEMQ-RTNQI  117 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~------~-------------------~~~~-~-----------------~~~~~~-~~~~~  117 (158)
                      |..|.....+.|.|...|.      .                   +... +                 ..+.+. .....
T Consensus       215 n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~  294 (331)
T 3u83_A          215 YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYS  294 (331)
T ss_dssp             ETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGG
T ss_pred             cCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccc
Confidence            9988877776665543210      0                   0000 0                 011222 23444


Q ss_pred             ccccccCcccceEeeeccCCceEEEEccccCCCCCCC
Q psy16261        118 ARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGD  154 (158)
Q Consensus       118 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (158)
                      +.|.|       .|.+.|..|....+..|.|...++.
T Consensus       295 d~G~Y-------~C~a~N~~G~~~~~~~l~V~~~~~~  324 (331)
T 3u83_A          295 LAGTY-------ICEATNPIGTRSGQVEVNITEAAAL  324 (331)
T ss_dssp             GCEEE-------EEEEEETTEEEEEEEEECCBC----
T ss_pred             cCeEE-------EEEEEeccccceEEEEEEEeccchh
Confidence            55666       9999999999999999998766543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.27  E-value=3.7e-12  Score=92.26  Aligned_cols=130  Identities=9%  Similarity=-0.032  Sum_probs=82.1

Q ss_pred             ecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE-
Q psy16261         12 RLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG-   89 (158)
Q Consensus        12 ~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-   89 (158)
                      ..|+.+.|.|.+ .|.|.|.+.|+++ +..+.....    ..........+.|.|..+...|.|.|+|.|.|..+.... 
T Consensus       127 ~~~~~~~l~C~~~~g~P~~~i~W~~~-~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  201 (308)
T 4fom_A          127 GGNETVAAICIAATGKPVAHIDWEGD-LGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR  201 (308)
T ss_dssp             TCSCEEEEEEEEEEEBSCCEEEECCC-SSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             cCCceEEEEEEecCCcCCceEEEEEC-Ccccccccc----eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE
Confidence            357789999975 6899999999999 655432211    011112223457999999999999999999998776533 


Q ss_pred             -EEEEEEeccCC------C-------------------CCc-cc------------------chhhhhhhcccccccccC
Q psy16261         90 -VIKVYNIGYFG------S-------------------DTQ-YV------------------TDEEMQRTNQIARSKWGS  124 (158)
Q Consensus        90 -~~~l~v~~~~~------~-------------------~~~-~~------------------~~~~~~~~~~~~~~~~g~  124 (158)
                       .+.|.|...|.      .                   +.. .+                  ..+.+......+.|.|  
T Consensus       202 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y--  279 (308)
T 4fom_A          202 YSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVY--  279 (308)
T ss_dssp             EEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEE--
T ss_pred             EeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEE--
Confidence             34443322210      0                   000 00                  0001112233445555  


Q ss_pred             cccceEeeeccCCceEEEEccccCCCCCC
Q psy16261        125 ERTNQIARSKWGSGYRYTSGPIRLPDPSG  153 (158)
Q Consensus       125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (158)
                           .|.|.|..|....+..|.|.+||-
T Consensus       280 -----~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          280 -----ICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             -----EEEEEETTEEEEEEEECCEECCC-
T ss_pred             -----EEEEEeCCCcEEEEEEEEEEcCCC
Confidence                 999999999999999999888874

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=83.81  Aligned_cols=83  Identities=12%  Similarity=0.084  Sum_probs=62.0

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+..++.+.+.|.+.+.|.|.+.|+++ +..+.....+..    ...+...+.|.|..+...|.|.|+|.|.|..|..+
T Consensus       128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~-~~~~~~~~~~~~----~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~  202 (218)
T 4frw_A          128 LEEGQGLTLAASCTAEGSPAPSVTWDTE-VKGTTSSRSFKH----SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQD  202 (218)
T ss_dssp             EETTCCSEEEEEEEEEEBSCCEEEEEES-SCCEEEEEEEEC----SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             eeeeeccccceeeeccCCcCceEEEEEC-CcccccCceEec----CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeE
Confidence            3455688899999999999999999999 655543322211    12233456799999999999999999999999886


Q ss_pred             EEEEEEEe
Q psy16261         89 GVIKVYNI   96 (158)
Q Consensus        89 ~~~~l~v~   96 (158)
                      ..+++.+.
T Consensus       203 ~~~t~~v~  210 (218)
T 4frw_A          203 QRITHILH  210 (218)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEE
Confidence            66555443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.27  E-value=3.7e-11  Score=94.10  Aligned_cols=88  Identities=15%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCee----EEEc--CCCe--eeec---------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPIT----FWTH--ENGS--LIHE---------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i----~W~~--~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.|.+    .|++  + +.  .+..         ..++.+.....   ....+|.|.+
T Consensus       337 ~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~-g~~~~l~~~~~~~~~~~~~r~~~~~~~~---~g~~~L~I~~  412 (585)
T 2ocw_A          337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN-GRCPLLVDSEGWVKAQYEGRLSLLEEPG---NGTFTVILNQ  412 (585)
T ss_pred             CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCC-CCCceeeeecceeecccCCCEEEeccCC---CcEEEEEECC
Confidence            345566889999999999999999977    7999  7 54  3321         23444432110   0123599999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      ++.+|+|.|+|.| |..|.....+.|.|..
T Consensus       413 v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~  441 (585)
T 2ocw_A          413 LTSRDAGFYWCLT-NGDTLWRTTVEIKIIE  441 (585)
T ss_pred             CChhhCEEEEEcc-cCCCccceeEEEEEec
Confidence            9999999999999 9888887777777765

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.26  E-value=4.5e-11  Score=82.41  Aligned_cols=86  Identities=13%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .+.+|+.+.|.|.+.|.|.|.+.|+++++..+....+........+.+...+.|.+   ...|.|.|+|.|.|..|....
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~  203 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENH  203 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceee
Confidence            45679999999999999999999999855555433222222222123333333443   468999999999999999999


Q ss_pred             EEEEEEecc
Q psy16261         90 VIKVYNIGY   98 (158)
Q Consensus        90 ~~~l~v~~~   98 (158)
                      .+.|.|...
T Consensus       204 ~~~l~v~~~  212 (222)
T 3sbw_C          204 TAELVIPEL  212 (222)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEecCC
Confidence            988887654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.26  E-value=3.3e-11  Score=97.91  Aligned_cols=76  Identities=21%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+....       .        .|.|.+++.+|.|.|+|.+.|..
T Consensus       349 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~~~~~~-------~--------~L~i~~v~~~d~G~Y~C~a~n~~  412 (816)
T 3dmk_A          349 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSE-------S--------VLRIESVKKEDKGMYQCFVRNDR  412 (816)
T ss_dssp             ESSEEECCTTSCEEEEEEEEEECCCEEEEEET-TEECSCCS-------S--------EEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCCceEecCCCCEEEEEEEeccCCCEEEEEEC-CEECCCCC-------C--------EEEEcCCCHHHCEEEEEEEECCC
Confidence            34455678899999999999999999999999 77664331       1        59999999999999999999998


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                      |.......|.+.
T Consensus       413 g~~~~~~~l~v~  424 (816)
T 3dmk_A          413 ESAEASAELKLG  424 (816)
T ss_dssp             CEEEECCEEECC
T ss_pred             CcEEEEEEEEEc
Confidence            877666655553

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.26  E-value=1.4e-11  Score=77.68  Aligned_cols=92  Identities=21%  Similarity=0.296  Sum_probs=63.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCC----eeEEEcCCC------eeee--------------cCCeEEEEEeecccceE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKP----ITFWTHENG------SLIH--------------EGSRYHMWTEKFSSYKF   59 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p----~i~W~~~~~------~~~~--------------~~~~~~~~~~~~~~~~~   59 (158)
                      .++..+.+.+|+.+.|.|.+.+.+.+    .+.|++.+.      ..+.              ...|+.+....  ....
T Consensus        10 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~   87 (126)
T 1eaj_A           10 TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND--LKSG   87 (126)
T ss_dssp             SSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC--GGGT
T ss_pred             CCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccc--ccCC
Confidence            35567789999999999999887653    489998721      1110              01333333220  0001


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        60 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      ..+|.|.+++.+|+|.|.|.+.|..+.....+.|.|..
T Consensus        88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            13699999999999999999999988777788887754

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.26  E-value=5.2e-11  Score=94.38  Aligned_cols=80  Identities=13%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-E
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-E   88 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~   88 (158)
                      .+..|+.+.|.|.+.+ |.+.+.|+++ +..+....++.+....       +.|.|.+++.+|.|.|+|.+.|..|.. +
T Consensus       122 ~v~~g~~v~l~C~~~~-p~~~v~W~~~-g~~l~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s  192 (642)
T 1e07_A          122 PVEDKDAVAFTCEPET-QDATYLWWVN-NQSLPVSPRLQLSNGN-------RTLTLFNVTRNDTASYKCETQNPVSARRS  192 (642)
T ss_pred             eEecCCcEEEEEECCC-CCeeEEEEEC-CeECCCCCceEEcCCC-------CEEEEeCCCcccCeeEEEEEecCCCCccc
Confidence            4677999999999999 8999999999 8877766666554322       379999999999999999999988764 3


Q ss_pred             EEEEEEEecc
Q psy16261         89 GVIKVYNIGY   98 (158)
Q Consensus        89 ~~~~l~v~~~   98 (158)
                      ..+.|.|...
T Consensus       193 ~~~~l~V~~~  202 (642)
T 1e07_A          193 DSVILNVLYG  202 (642)
T ss_pred             ceEEEEEEeC
Confidence            4566666643

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.26  E-value=3.8e-11  Score=81.93  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCe---eEEEcCCCeeeecC------------------CeEEEEEeecccceEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPI---TFWTHENGSLIHEG------------------SRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~---i~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l   63 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+.   +.|+|+ +..+...                  .|+......  .....++|
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~sL   81 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARV-DAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPP--RNPLDGSV   81 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEE-CSSSCEEEEEEEETTTEEEECGGGTTTEECCSSC--CCTTBCCE
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEEC-CCCCCceeEEEecCCCCeEeCccccceEEEeccc--ccCCeEEE
Confidence            35567899999999999999988764   889987 4322111                  111111000  00012369


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .|.+++.+|+|.|.|.+.+..+....
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~  107 (218)
T 4frw_A           82 LLRNAVQADEGEYECRVSTFPAGSFQ  107 (218)
T ss_dssp             EESSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             EEeeccHHHCCceeEEEEeccCceee
Confidence            99999999999999999987665533

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.25  E-value=6.9e-12  Score=83.28  Aligned_cols=71  Identities=23%  Similarity=0.376  Sum_probs=55.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.+.| .+.+.|+++ +..+.....               .+.+.+++.+|+|.|+|.+
T Consensus         7 i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~-g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C~~   70 (170)
T 3ry4_A            7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN-GNLIPTHTQ---------------PSYRFKANNNDSGEYTCQT   70 (170)
T ss_dssp             EEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEET-TEECTTCCS---------------SEEEEECCGGGCEEEEEEE
T ss_pred             EEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEEC-CeEcccCcc---------------ceEEEecccccCeEEEEEE
Confidence            44556666788999999999999987 579999999 776654321               3667789999999999999


Q ss_pred             EcCCCceE
Q psy16261         81 KNTLGGSE   88 (158)
Q Consensus        81 ~n~~g~~~   88 (158)
                      .|......
T Consensus        71 ~~~~~s~~   78 (170)
T 3ry4_A           71 GQTSLSDP   78 (170)
T ss_dssp             TTSBCCCC
T ss_pred             eCCCceEe
Confidence            98655443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.25  E-value=7.4e-11  Score=92.40  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCee-----ee---------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSL-----IH---------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .|+.+.+.+|+.+.|.|.+.+.|.+   .+.|+|+ +..     +.         ...|+.+.....   .....|.|.+
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~g~~~L~I~~   81 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ-GARGGCITLISSEGYVSSKYAGRANLTNFPE---NGTFVVNIAQ   81 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeC-CCCCCceEEEECCCcccceeeceEEEEecCC---CCEEEEEECC
Confidence            4667789999999999999998755   8899998 432     11         123444433100   1124699999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      ++.+|+|.|+|.+.|..+.....+.|.|...+
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p  113 (585)
T 2ocw_A           82 LSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP  113 (585)
T ss_pred             CCcccCEEEEEEcccCCCCceEEEEEEEecCc
Confidence            99999999999999998887777777776543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.24  E-value=6.4e-11  Score=79.32  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=59.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+....+.+|+.+.|.|.+.|.|.| .+.|+++ +..+.....    ..        +.|.|.++  .|+|.|+|.|.|.
T Consensus       104 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~-~~~~~~~~~----~~--------~~L~i~~~--~d~G~Y~C~a~N~  168 (182)
T 1rhf_A          104 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG-TTKIGGPAP----SP--------SVLNVTGV--TQSTMFSCEAHNL  168 (182)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSSCCEEEEEET-TEECSCSEE----SS--------EEEEECCC--SSCEEEEEEEEET
T ss_pred             cCcceEecCCCEEEEEeEecCCCCCCEEEEEcC-CeECCCCCC----Cc--------eEEEEecc--ccCeEEEEEEECC
Confidence            3455668899999999999999999 9999999 766543311    11        36999988  5899999999999


Q ss_pred             CCceEE-EEEEEE
Q psy16261         84 LGGSEG-VIKVYN   95 (158)
Q Consensus        84 ~g~~~~-~~~l~v   95 (158)
                      .|.... .+.|.|
T Consensus       169 ~g~~~s~~~~l~V  181 (182)
T 1rhf_A          169 KGLASSRTATVHL  181 (182)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCCcccceEEEEe
Confidence            998753 666655

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.24  E-value=1.6e-11  Score=85.45  Aligned_cols=87  Identities=11%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEE--EEEEcCCCCCCCeEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM--RLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~v~~~d~G~Y~C~   79 (158)
                      |...+. ..+.+|+++.|.|.+.+ +.+.+.|+|+ +..+....+. .....     ...  .|.|.+++.+|+|.|+|.
T Consensus        12 i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~-g~~~~~~~~~-~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A           12 ISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMII-KNSTYREIGR-RLKFW-----NETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             EEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEE-ETTEEEECSE-ECC---------CCCEEEECSCCGGGCEEEEEE
T ss_pred             EEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEEC-CCcccccccc-cCCCC-----cceeeEEEEcccccccCEEEEEE
Confidence            344454 35889999999999987 6789999999 6544322110 00000     112  699999999999999999


Q ss_pred             EEcCCCce--EEEEEEEEec
Q psy16261         80 AKNTLGGS--EGVIKVYNIG   97 (158)
Q Consensus        80 a~n~~g~~--~~~~~l~v~~   97 (158)
                      +.|..|..  +..+.|.|..
T Consensus        83 a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             EEETTTEEEECCCEEEEEEC
T ss_pred             EEcCCCceeecCCEEEEEcC
Confidence            99987633  2335555543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.24  E-value=1.4e-10  Score=85.00  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecC---CC-eeEEEcCCCee-eecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP---KP-ITFWTHENGSL-IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKC   78 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p---~p-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C   78 (158)
                      .+....+.+|+.+.|.|.+.|.|   .| .+.|+++ +.. +..+.+.......... ...+.|.|.+++.+|+| .|+|
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~-g~~i~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~C  311 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP-SGWIIGLDFGVYSILTSSGG-ITEATLYFENVTEEYIGNTYTC  311 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECT-TSCBCCBCSSEEEEEEEETT-EEEEEEEESSCCGGGTTCEEEE
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEEC-CeeeeccCCceeeeecccCc-eeEeEEEEEeccHHHCCCcEEE
Confidence            34556788999999999999998   77 8899999 555 3444333222111011 23468999999999999 9999


Q ss_pred             EEEcCCCceEEEEEEEE
Q psy16261         79 NAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v   95 (158)
                      .|.|..|.....+.|.|
T Consensus       312 ~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          312 RGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEECSSCEEEEEEEEEE
T ss_pred             EEEecCCceEEEEEEEe
Confidence            99999999988888765

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.23  E-value=2.2e-11  Score=90.27  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .+.+|+.+.|.|.+.+.|.|.+.|+++ +..+       .....        .|.|.+++.+|+|.|+|.|.|..+....
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~-------~~~~~--------~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  170 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSP-RGKN-------IQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKVEF  170 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECS-SSCE-------EEESS--------EEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcC-CCcc-------cccce--------EEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence            467999999999999999999999999 4332       11222        6999999999999999999998776666


Q ss_pred             EEEEEEecc
Q psy16261         90 VIKVYNIGY   98 (158)
Q Consensus        90 ~~~l~v~~~   98 (158)
                      .+.|.|...
T Consensus       171 ~~~l~v~~~  179 (363)
T 1wio_A          171 KIDIVVLAF  179 (363)
T ss_dssp             CCEECEECC
T ss_pred             EEEEEEecC
Confidence            666655543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.23  E-value=6.2e-12  Score=85.78  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCe--EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSR--YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...+.. .+.+|+.+.|.|.+.+.|. .+.|+|+ +..+....+  ......        +.|.|.+++.+|+|.|+|.+
T Consensus         9 ~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~-g~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a   77 (198)
T 1ugn_A            9 WAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYRE-KKTAPWITRIPQELVKK--------GQFPIPSITWEHTGRYRCYY   77 (198)
T ss_dssp             EEESCS-EEETTCCEEEEEECCTTCC-CEEEEES-SSCCHHHHTSCHHHHTT--------TEEEESSCCGGGCEEEEEEE
T ss_pred             eccCCC-cccCCCcEEEEEEecCCCc-EEEEEEC-CccccccccccccCCcc--------cEEEECCCCHHHCeEEEEEE
Confidence            344443 5889999999999998775 7999999 655531100  000011        26999999999999999999


Q ss_pred             EcCC-C--ceEEEEEEEEec
Q psy16261         81 KNTL-G--GSEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~-g--~~~~~~~l~v~~   97 (158)
                      .|.. |  ..+..+.|.|..
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             EETTTEECCCCCCEEEEEEC
T ss_pred             ECCCCCcccCCccEEEEEcc
Confidence            9987 5  224455666655

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.23  E-value=4.2e-11  Score=82.45  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             EEEecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC-CCc
Q psy16261          9 IGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT-LGG   86 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~-~g~   86 (158)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+++ +..+...     ...        +.|.|.+++.+|+|.|+|.|.|. .+.
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~-g~~~~~~-----~~~--------~~L~i~~v~~~D~G~Y~C~a~n~~~~~  163 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQN-GKGRKYF-----HHN--------SDFYIPKATLKDSGSYFCRGLVGSKNV  163 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEET-TEEEEEE-----EEC--------CCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEEC-CcEeecc-----cCC--------ceEEECcCCcccCEEEEEEEEeCCCce
Confidence            457799999999999766 5678999999 6654221     111        26999999999999999999994 444


Q ss_pred             eEEEEEEEEeccCCCCCc
Q psy16261         87 SEGVIKVYNIGYFGSDTQ  104 (158)
Q Consensus        87 ~~~~~~l~v~~~~~~~~~  104 (158)
                      .+..+.|.|.+.+..+..
T Consensus       164 ~s~~~~l~V~~~~~~P~i  181 (204)
T 3sgj_C          164 SSETVQITITQGLAVSTI  181 (204)
T ss_dssp             ECCCEEEEEEC-------
T ss_pred             ecCcEEEEEeCcCCCCcc
Confidence            466788888877655543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.23  E-value=3.1e-11  Score=83.82  Aligned_cols=88  Identities=16%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             ceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ....+.+|+.+.|.|.+.| .|.|.+.|+++++..+..... .......+.+.   .+.+..++.+|.|.|+|.|.|..|
T Consensus       126 ~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~-~~~~~~~g~~~---v~s~l~v~~~d~G~YtC~a~N~~g  201 (226)
T 4f80_A          126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA-PVVADGVGLYA---VAASVIMRGSSGEGVSCTIRSSLL  201 (226)
T ss_dssp             EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC-CCEECTTSCEE---EEEEEEECC----CEEEEEEETTT
T ss_pred             ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce-EEEECCCCcEE---EEEEEEechhcCcEEEEEEEeCCC
Confidence            3455778999999999998 599999999974555433221 12222212332   233445678999999999999999


Q ss_pred             ceEEEEEEEEecc
Q psy16261         86 GSEGVIKVYNIGY   98 (158)
Q Consensus        86 ~~~~~~~l~v~~~   98 (158)
                      .....+.|.|.++
T Consensus       202 ~~~~~~~v~v~ep  214 (226)
T 4f80_A          202 GLEKTASISIADP  214 (226)
T ss_dssp             TEEEEEEECCCTT
T ss_pred             CeEEEEEEEECCC
Confidence            9998888877654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.22  E-value=5.3e-11  Score=86.96  Aligned_cols=93  Identities=20%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEc----CCCeeeecCCe--EEEEEeec-cc-ceEEEEEEEcCCCCCCCeEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTH----ENGSLIHEGSR--YHMWTEKF-SS-YKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~----~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++    + +..+....+  +.+....+ .. ....+.|.|.+++.+|+|.|+|
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  308 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN-GSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC  308 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGG-GCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEE
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCC-CccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEE
Confidence            45668899999999999999999999999    5 555543322  11111100 00 0001259999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEeccCC
Q psy16261         79 NAKNTLGGSEGVIKVYNIGYFG  100 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~~~~~  100 (158)
                      .|.|..|.....+.|.|...+.
T Consensus       309 ~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          309 LAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             EEEESSCCEEEEEEEEEECSCC
T ss_pred             EEeCCCCeEEEEEEEEEEECCC
Confidence            9999999999999999887654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.22  E-value=4.9e-11  Score=87.72  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCC-----------CeeEEEcCCCee------ee---cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK-----------PITFWTHENGSL------IH---EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~-----------p~i~W~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ...+.+.+|+.+.|.|.+.+.|.           +.+.|+++ +..      +.   ...++.. ...        .|.|
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~~-~~~--------~L~i   83 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWT-RQDRDLEEPINFRLPENRISK-EKD--------VLWF   83 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEE-ESSCCCEEECCCCCGGGCEEE-ETT--------EEEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEEC-CCCCcccccccccccCceEee-cCC--------EEEE
Confidence            45567899999999999997664           89999998 521      11   1222222 122        6999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      .+++.+|+|.|+|.|.|..+.....+.|.|...
T Consensus        84 ~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~  116 (349)
T 4dep_C           84 RPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQK  116 (349)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             ccCChhhCEEEEEEEecCCceEEEEEEEEEecC
Confidence            999999999999999999888887777777653

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.22  E-value=1.5e-11  Score=93.43  Aligned_cols=72  Identities=11%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +....+.+|+.+.|.|.+.+.|.+   .+.|+++ +..+.......        ....+.|.|.++..+|.|.|+|.|.|
T Consensus        93 ~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~-g~~l~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~n  163 (450)
T 1z7z_I           93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG-EKELKREPAVG--------EPAEVTTTVLVRRDHHGANFSCRTEL  163 (450)
T ss_dssp             CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET-TEEEEEEECCT--------TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeC-CEEeecccccc--------cccceEEEEEeeccccCceEEEEEEc
Confidence            344557889999999999999888   8999999 77664332110        11124799999999999999999999


Q ss_pred             CCCc
Q psy16261         83 TLGG   86 (158)
Q Consensus        83 ~~g~   86 (158)
                      ..|.
T Consensus       164 ~~g~  167 (450)
T 1z7z_I          164 DLRP  167 (450)
T ss_dssp             ECGG
T ss_pred             ccCC
Confidence            8774

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.22  E-value=8.5e-11  Score=74.13  Aligned_cols=87  Identities=22%  Similarity=0.271  Sum_probs=61.8

Q ss_pred             CceEEEecCCCEEEEeEEeec--CCCeeEEEcCCCeeeec-------------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESY--PKPITFWTHENGSLIHE-------------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +..+.+.+|+++.|.|...+.  +...+.|+++ ...+..             ..|+.+...        .+|.|.+++.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~-~~~i~~~~~~~~~~~~~~~~~R~~~~~~--------~sL~I~~v~~   80 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQ-DQLLAICNADLGWHISPSFKDRVAPGPG--------LGLTLQSLTV   80 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEET-TEEEEEEETTTEEECCGGGTTTEEECST--------TCEEECSCCG
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeC-CEEEEEEECCCCceeCccccCcEEeCCc--------eEEEEeeCCh
Confidence            445678999999999999873  3347899998 433210             234433211        2699999999


Q ss_pred             CCCeEEEEEEEc-CCCceEEEEEEEEeccCCC
Q psy16261         71 SDFGTYKCNAKN-TLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        71 ~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~~~~  101 (158)
                      +|.|.|.|.+.+ ..|.....+.|.|..++..
T Consensus        81 ~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           81 NDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             GGCEEEEEEEEEETTCCEEEEEEEEEECC---
T ss_pred             hhCEEEEEEEEECCCCCeEEEEEEEEEccCcc
Confidence            999999999754 5688888889988876543

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.22  E-value=3.8e-11  Score=76.70  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCee-e--e-------------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSL-I--H-------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~-~--~-------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      |++++..+....|+++.|.|.+...+.+   .+.|+|.+... +  .             ...|+.+....  ......+
T Consensus         8 Vt~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~--~~~g~~s   85 (125)
T 4gos_A            8 ITVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQ--VIVGNAS   85 (125)
T ss_dssp             SCEEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTT--GGGTBCC
T ss_pred             EEccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCC--ccCCeEE
Confidence            3455566778899999999998654433   68999873211 0  0             01233322111  1111237


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   95 (158)
                      |.|.+++.+|+|.|.|.+.|..|..++.+.|.|
T Consensus        86 L~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           86 LRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            999999999999999999999998888888876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.22  E-value=4.2e-12  Score=91.97  Aligned_cols=81  Identities=17%  Similarity=0.272  Sum_probs=63.2

Q ss_pred             EEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+..|+.+.|.|.+.|.|.| .+.|+|+ +..+......   ..       ...|.|.+++.+|+|.|+|.|.|.+|..
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~-~~~~~~~~~~---~~-------~~~l~i~~v~~~d~G~Y~C~A~N~~G~~  290 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRL-DGQWPDGLLA---SD-------NTLHFVHPLTFNYSGVYICKVTNSLGQR  290 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBS-SSCCCSSCBC---ST-------TEEECCSCCCSCCCSEEEEEEEETTEEE
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEEC-CeECCCcEEE---cC-------CeEEEECCCChhhCEEEEEEEEeCCCcE
Confidence            345678999999999999999 6999999 5554333111   01       1257788999999999999999999999


Q ss_pred             EEEEEEEEeccCC
Q psy16261         88 EGVIKVYNIGYFG  100 (158)
Q Consensus        88 ~~~~~l~v~~~~~  100 (158)
                      +..+.|.|.++|.
T Consensus       291 ~~~~~l~V~~~P~  303 (308)
T 4fom_A          291 SDQKVIYISDPPH  303 (308)
T ss_dssp             EEEEECCEECCC-
T ss_pred             EEEEEEEEEcCCC
Confidence            9999999888764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.21  E-value=1.1e-12  Score=105.54  Aligned_cols=87  Identities=20%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.+....       +.|.|.++..+|+|.|+|.|.|..|.
T Consensus       674 ~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~  745 (772)
T 3v2a_R          674 ENQTTSIGESIEVSCTASGNPPPQIMWFKD-NETLVEDSGIVLKDGN-------RNLTIRRVRKEDEGLYTCQACSVLGC  745 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEeCCCCEEEEEEeCccCCCeEEEEEC-CeECcCCCCeEEcCCC-------cEEEECcCCHHHCEEEEEEEEeCCcc
Confidence            345577899999999999999999999999 7777665555443321       37999999999999999999999999


Q ss_pred             eEEEEEEEEeccCCC
Q psy16261         87 SEGVIKVYNIGYFGS  101 (158)
Q Consensus        87 ~~~~~~l~v~~~~~~  101 (158)
                      ....+.|.|.+.+..
T Consensus       746 ~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          746 AKVEAFFIIEGAQEK  760 (772)
T ss_dssp             ---------------
T ss_pred             eeEEEEEEEECCCCc
Confidence            999999999887643

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.21  E-value=1.6e-10  Score=81.17  Aligned_cols=92  Identities=11%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC---------------CeeeecC---CeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN---------------GSLIHEG---SRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~---------------~~~~~~~---~~~~~~~~~~~~~~~~~~l   63 (158)
                      |+.++..+.+.+|+.+.|.|.+.+.+.+.+.|++..               +......   .|+.+.....    ..++|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L   79 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASL----TLSTL   79 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEET----TEEEE
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCC----CEEEE
Confidence            456677788999999999999999999999999820               2212111   4555544221    13479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCc----eEEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGG----SEGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..+.    ....+.|.|..
T Consensus        80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            99999999999999999976431    12345566654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.21  E-value=3.1e-11  Score=81.84  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+.. .+.+|+++.|.|.+.+ +.+.+.|+|+ +..+... ....       .......|.|.+++.+|+|.|+|.+
T Consensus         7 i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y~C~~   76 (188)
T 1oll_A            7 IWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFE-GSLFAVDRPKPP-------ERINKVKFYIPDMNSRMAGQYSCIY   76 (188)
T ss_dssp             EEEESCS-EEETTCCEEEEEECCT-TCCEEEEEET-TEEEEEECCSSC-------TTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEEC-CCcccccccccC-------CCcceeEEEeCcCCcccCeEEEEEe
Confidence            3444554 5889999999999976 4568899999 6654321 0000       0011247999999999999999999


Q ss_pred             EcCCCce--EEEEEEEEe
Q psy16261         81 KNTLGGS--EGVIKVYNI   96 (158)
Q Consensus        81 ~n~~g~~--~~~~~l~v~   96 (158)
                      .|..+..  +..+.|.|.
T Consensus        77 ~~~~~~~~~s~~~~l~V~   94 (188)
T 1oll_A           77 RVGELWSEPSNLLDLVVT   94 (188)
T ss_dssp             EETTEECCCCCCEEEEEE
T ss_pred             cCCCCCCCCCCceEEEec
Confidence            9865432  334555554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.21  E-value=1.6e-10  Score=81.46  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             eEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+...     ...        +.|.|.+++.+|.|.|+|.+.|..+.
T Consensus        91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~-g~~~~~~-----~~~--------~~l~i~~~~~~d~G~Y~C~~~n~~~~  156 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRN-GKAFKFF-----HWN--------SNLTILKTNISHNGTYHCSGMGKHRY  156 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCCEEEEEEET-TEEEEEE-----EEC--------CCEEESSCCGGGCEEEEEEEESSSEE
T ss_pred             CeEEecCCeEEEEEEccCCCCCceEEEEEC-Ccccccc-----CCC--------CeEEEEECChhhCEEEEEEEeCCCCc
Confidence            3457799999999999 7778889999999 7665321     111        26999999999999999999999887


Q ss_pred             eEEEEEEEEecc
Q psy16261         87 SEGVIKVYNIGY   98 (158)
Q Consensus        87 ~~~~~~l~v~~~   98 (158)
                      ....+.|.|...
T Consensus       157 ~~~~~~l~V~~~  168 (262)
T 3rjd_A          157 TSAGISVTVKEL  168 (262)
T ss_dssp             EEECEEEEEECS
T ss_pred             cccceEEEeccC
Confidence            777777777753

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.20  E-value=1.1e-10  Score=80.05  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee----------e--cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI----------H--EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~----------~--~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++ +..+          .  ...++......     ..+.|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-----TDFTLSINSV   78 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC-----CEEEEEECCC
Confidence            345577788999999999999999999999998752 1111          1  11455554322     1247999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEE-EEEEEEec
Q psy16261         69 SKSDFGTYKCNAKNTLGGSEG-VIKVYNIG   97 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~   97 (158)
                      +.+|+|.|+|.+.|..+.... .+.|.|..
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           79 ETEDFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ChhhCEEEEEeeecCCcceeCCCEEEEEec
Confidence            999999999999998775422 23555543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.20  E-value=3.6e-11  Score=87.66  Aligned_cols=77  Identities=22%  Similarity=0.402  Sum_probs=62.6

Q ss_pred             EecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEc-CCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG-SLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+|+.+.|.|.+.|.|.|. +.|+++ +..+.....  . ...        .|.|. ++..+|+|.|+|.|.|..|...
T Consensus       244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~-~~~~~~~~~--~-~~~--------~L~i~~~v~~~d~G~Y~C~a~N~~G~~~  311 (331)
T 3u83_A          244 YLQRMDVKLTCKADANPPATEYHWTTL-NGSLPKGVE--A-QNR--------TLFFKGPINYSLAGTYICEATNPIGTRS  311 (331)
T ss_dssp             BTTCCCEEEEEEEEEESCCCEEEEEET-TBSCCTTEE--E-ETT--------EEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred             EeCCCeEEEEEeCcCCCCCCEEEEEEC-CCcccccce--e-cCc--------EEEEeCCCccccCeEEEEEEEeccccce
Confidence            56799999999999999998 999999 665544321  1 222        69999 8999999999999999999998


Q ss_pred             EEEEEEEeccC
Q psy16261         89 GVIKVYNIGYF   99 (158)
Q Consensus        89 ~~~~l~v~~~~   99 (158)
                      ..+.|.|....
T Consensus       312 ~~~~l~V~~~~  322 (331)
T 3u83_A          312 GQVEVNITEAA  322 (331)
T ss_dssp             EEEEECCBC--
T ss_pred             EEEEEEEeccc
Confidence            88888887654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.20  E-value=2.3e-10  Score=72.48  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee-e--------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI-H--------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...+..+.+.+|+.+.|.|.+.+.+.+.+.|++.. +.   .+ .        ...|+.+....     ...+|.|.++
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~-----~~~~L~I~~v   78 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-----TQFSLKINSL   78 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccC-----CEEEEEECCC
Confidence            345577788999999999999999888899999852 11   11 1        12456554321     1247999999


Q ss_pred             CCCCCeEEEEEEEcCC-Cc-eEEEEEEEEecc
Q psy16261         69 SKSDFGTYKCNAKNTL-GG-SEGVIKVYNIGY   98 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~-g~-~~~~~~l~v~~~   98 (158)
                      +.+|+|.|.|.+.|.. .. ....+.|.|...
T Consensus        79 ~~~DsG~Y~C~~~~~~~~~~fg~gt~L~V~~~  110 (120)
T 1mqk_L           79 LPEDFGSYYCQHHYGTPPLTFGGGTKLEIKRE  110 (120)
T ss_dssp             CGGGCEEEEEEECSSSSSCCBCCCEEEEEC--
T ss_pred             CHHHCEEEEEEEEeCCCceEECCCeEEEEecC
Confidence            9999999999999853 21 223456666544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.19  E-value=3.3e-11  Score=82.30  Aligned_cols=81  Identities=16%  Similarity=0.360  Sum_probs=61.3

Q ss_pred             EEecCCCEEEEeE-EeecCCCeeEEEcCCCe-eeecCCe---------EEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261         10 GARLAAPLTLDCH-VESYPKPITFWTHENGS-LIHEGSR---------YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus        10 ~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      .+.+|+.+.|.|. +.+.|.|.+.|+++ +. .+....+         +.....       .+.|.|.++..+|.|.|+|
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~-~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C  186 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFTIDPK-------SGDLIFDPVTAFDSGEYYC  186 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEET-TEESBC-----CBSCSSSCEEECTT-------TCCEEESSCCGGGCEEEEE
T ss_pred             ccCCCCeEEEEEEcccCcCCCEEEEEeC-CcccccccccccccccCceeEecCC-------CceEEEEecChhhCcEEEE
Confidence            4788999999999 79999999999999 76 6654322         211111       1269999999999999999


Q ss_pred             EEEcCCCce--EEEEEEEEecc
Q psy16261         79 NAKNTLGGS--EGVIKVYNIGY   98 (158)
Q Consensus        79 ~a~n~~g~~--~~~~~l~v~~~   98 (158)
                      .|.|..|..  +..+.|.|...
T Consensus       187 ~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          187 QAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             EEECSSSCCEECCCEEEEEESS
T ss_pred             EEccccCCccccceEEEEEEEe
Confidence            999999988  45667766653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.19  E-value=2.7e-10  Score=78.38  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC--Ce--ee-e------------cCCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN--GS--LI-H------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~--~~--~~-~------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++.++ .+.+.+|+.+.|.|.+.+. |.+.+.|++..  ..  .+ .            ...|+.+....     ..++|
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L   77 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSG-----ADRYL   77 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEET-----TEEEE
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCC-----ceEEE
Confidence            34455 7889999999999999999 89999999831  11  00 0            01255444321     13479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC-----ceEEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG-----GSEGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..|     .....+.|.|..
T Consensus        78 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           78 SISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             EESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             EEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            9999999999999999999876     223345566653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.19  E-value=1.9e-10  Score=89.13  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEE-EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+.+|+.+.|.|.+.|.|++  .+.|+++ +..+..+.++.. ....++.+...+.|.|.++..+|.|.|+|.|.|..|.
T Consensus       125 ~~~~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  203 (523)
T 2rcj_C          125 EELQANKATLVCLISDFYPGAVTVAWKAD-GSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  203 (523)
T ss_pred             cccCCCceEEEEEeccccCCceEEEEecC-CCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc
Confidence            45579999999999998765  8999999 776654432221 1112234444567999999999999999999998876


Q ss_pred             eEEEEE
Q psy16261         87 SEGVIK   92 (158)
Q Consensus        87 ~~~~~~   92 (158)
                      ....+.
T Consensus       204 ~~~~~~  209 (523)
T 2rcj_C          204 VEKTVA  209 (523)
T ss_pred             ccccee
Confidence            544443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.19  E-value=3.4e-10  Score=78.48  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=62.8

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+..|+++.|.|.+ +.|.|  .+.|++. ...+   .+......       ...|.|.+++.+|.|.|.|.+.|..+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~-~~~l---~~~~~~~~-------~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGL-DTSL---GAVQSDTG-------RSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESS-TTTT---CCEEEESS-------EEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeec-cccc---CcEEecCC-------ccEEEECccCcccCceEEEEEEeCCCc
Confidence            679999999999999 98888  9999987 3322   22222211       137999999999999999999999888


Q ss_pred             eEEEEEEEEeccC
Q psy16261         87 SEGVIKVYNIGYF   99 (158)
Q Consensus        87 ~~~~~~l~v~~~~   99 (158)
                      ....+.|.|...|
T Consensus        85 ~~~~~~ltV~~~P   97 (210)
T 1gsm_A           85 FQHTVQLLVYAFP   97 (210)
T ss_dssp             EEEEEEEEEEBCC
T ss_pred             eEEEEEEEEEecC
Confidence            7888888887765

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.18  E-value=3.8e-11  Score=87.19  Aligned_cols=132  Identities=8%  Similarity=-0.026  Sum_probs=82.1

Q ss_pred             EecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         11 ARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        11 ~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      +..++.+.+.|.+. +.|.+.+.|+++ +..+....+.  .....+.+...+.|.|......|.|.|+|.|.|..+....
T Consensus       129 ~~~~~~~~~~C~~~~~~P~~~i~W~~~-~~~~~~~~~~--~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  205 (313)
T 4fqp_A          129 LTGEPVPMARCVSTGGRPPAQITWHSD-LGGMPNTSQV--PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQ  205 (313)
T ss_dssp             CCSSCEEEEEEEEEEEBSCCEEEEEET-TCCEEEEEEE--ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCE
T ss_pred             eecCceEEEEEEccCccCCcEEEeecC-Ccccccccee--eeecccccccceeeeecccccccCeeEEEEEEccCcCccc
Confidence            44577788889875 789999999999 6555432221  1111123344557999999999999999999998765533


Q ss_pred             --EEEEEEeccC------C---------------------CCCc--------cc--------chhhhhhhcccccccccC
Q psy16261         90 --VIKVYNIGYF------G---------------------SDTQ--------YV--------TDEEMQRTNQIARSKWGS  124 (158)
Q Consensus        90 --~~~l~v~~~~------~---------------------~~~~--------~~--------~~~~~~~~~~~~~~~~g~  124 (158)
                        .+.|.|...|      .                     .+..        .+        ..+.+......+.|.|  
T Consensus       206 ~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y--  283 (313)
T 4fqp_A          206 LLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTL--  283 (313)
T ss_dssp             EEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEE--
T ss_pred             eeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEE--
Confidence              3333322111      0                     0000        00        0122222334455666  


Q ss_pred             cccceEeeeccCCceEEEEccccCCCCC
Q psy16261        125 ERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                           .|.|.|..|....+..|.|.++|
T Consensus       284 -----~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          284 -----ICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             -----EEEEECSSCEEEEEEEEEEECCC
T ss_pred             -----EEEEEeCCCcEEEEEEEEEEeCC
Confidence                 99999999999999988876544

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.18  E-value=1.9e-10  Score=80.39  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC----CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP----KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|    .+.+.|++++ +.   .+.         ...|+.+....     ...+|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~   78 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-----TDFTLI   78 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEE
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC-----CeEEEE
Confidence            44567778899999999999999988    7899999852 11   111         12455554322     123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGG-SEGVIKVYNIGYF   99 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~   99 (158)
                      |.+++.+|+|.|.|.+.|..+. ......|.|...+
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           79 IDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             EcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            9999999999999999998665 3344566666543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.17  E-value=1.8e-10  Score=79.08  Aligned_cols=89  Identities=18%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--Ce--eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--GS--LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|++.+  ..  .+.         ...|+......     ..++|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (213)
T 3r06_A            4 MTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG-----RDSSFTISSL   78 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             eEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC-----CEEEEEECCC
Confidence            445577788999999999999999999999999831  11  111         13455554322     1347999999


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy16261         69 SKSDFGTYKCNAKNTLGGS-EGVIKVYN   95 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~v   95 (158)
                      +.+|+|.|.|.+.|..+.. ...+.|.|
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           79 ESEDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             CcccCEEEEEecccCCceEEcCCceEEE
Confidence            9999999999999876533 22345555

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.17  E-value=4.7e-12  Score=87.48  Aligned_cols=74  Identities=16%  Similarity=0.242  Sum_probs=49.7

Q ss_pred             eEEEecCCCEEEEeEEeecCC-----CeeEEEcCCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          8 LIGARLAAPLTLDCHVESYPK-----PITFWTHENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~-----p~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+.+.+|+.+.|.|.+.+.|.     +.+.|++++.....            ...|+.+....  .....++|.|.+++.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDL--LVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTT--GGGTBCCEEECSCCG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEeccc--ccCCeEEEEECCccc
Confidence            455789999999999988764     68999998332210            11222222100  000023699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy16261         71 SDFGTYKCNAKNT   83 (158)
Q Consensus        71 ~d~G~Y~C~a~n~   83 (158)
                      +|+|.|+|.+.|.
T Consensus        82 ~D~G~Y~C~~~~~   94 (222)
T 4i0k_A           82 TDEGSYTCFVSIQ   94 (222)
T ss_dssp             GGCSCEEEEEEEC
T ss_pred             ccCEEEEEEEEeC
Confidence            9999999999975

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.17  E-value=1e-10  Score=79.71  Aligned_cols=86  Identities=12%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             eecCceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeee---cC---------------CeEEEEEeecccceEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIH---EG---------------SRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~~l   63 (158)
                      +..+..+.+.+|+++.|.|.+.+ .+.+.+.|+++ +..+.   .+               .|+.+..        .++|
T Consensus         2 s~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~--------~~sL   72 (193)
T 2if7_A            2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFN-ETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ--------SYSL   72 (193)
T ss_dssp             -CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEET-TEEEEEEECCSSSCCEEEECCHHHHTTEEECT--------TCCE
T ss_pred             CCCCeEEEEEecCeEEEeccCCCcccccEEEEEEC-CEEEEEEecccCCCCceeecCccccccEEECC--------CeEE
Confidence            34577788999999999999976 45679999998 65432   11               1222221        1379


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..+.....+.|.|..
T Consensus        73 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  106 (193)
T 2if7_A           73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR  106 (193)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EECCCCcccCceEEEEEEecCCCeEEEEEEEEEc
Confidence            9999999999999999999988766666676654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.17  E-value=1.2e-10  Score=85.23  Aligned_cols=81  Identities=15%  Similarity=0.212  Sum_probs=63.4

Q ss_pred             EEEecCCCEEEEeE-----EeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          9 IGARLAAPLTLDCH-----VESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         9 ~~~~~g~~v~l~C~-----~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+|+.+.|.|.     +.|.|.+.+.|+++ +..+... .++......       +.|.|.+++..|.|.|+|.+.|
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~-g~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~a~n  201 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD-SLLLDKDNEKFLSVRGT-------THLLVHDVALEDAGYYRCVLTF  201 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEES-SCBCCTTCSSEEECTTS-------SEEEESSCCGGGCEEEEEEEEC
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecC-CeeCCCCCceeEEcCCc-------ceEEEcccCHhhCeEEEEEEEE
Confidence            35788999999999     88999999999999 7766544 444433221       2699999999999999999999


Q ss_pred             CCCc----eEEEEEEEEec
Q psy16261         83 TLGG----SEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~----~~~~~~l~v~~   97 (158)
                      ..|.    ....+.|.|..
T Consensus       202 ~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          202 AHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             CBTTBCCEEEEEEEEEEEC
T ss_pred             CCCCeEEEEEEEEEEEEEc
Confidence            8873    45566776653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.16  E-value=2.7e-10  Score=76.17  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             EEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+.+++ .+.|+++ +..+...     ...        ..|.|.+++.+|+|.|+|.|.|..+..
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~-g~~~~~~-----~~~--------~~L~i~~v~~~d~G~Y~C~a~n~~~~~  163 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQN-GKDRKYF-----HHN--------SDFHIPKATLKDSGSYFCRGLVGSKNV  163 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEET-TEEEEEE-----EEC--------CCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEEC-CeEccCC-----CCC--------CEEEEcccChhhCeEEEEEEEcCCCCc
Confidence            457799999999999987765 9999999 7665221     111        269999999999999999999976543


Q ss_pred             -EEEEEEEEec
Q psy16261         88 -EGVIKVYNIG   97 (158)
Q Consensus        88 -~~~~~l~v~~   97 (158)
                       +..+.|.|.+
T Consensus       164 ~s~~~~l~V~~  174 (175)
T 1fnl_A          164 SSETVNITITQ  174 (175)
T ss_dssp             ECCCEEEEEEC
T ss_pred             cCccEEEEEeC
Confidence             4456676654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.16  E-value=2.8e-10  Score=82.79  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce---
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS---   87 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~---   87 (158)
                      +.+|+.+.|.|.+. .+.+.+.|+++ +..+...........    ......|.|.+++.+|+|.|+|.|.|..|..   
T Consensus       130 v~~G~~v~L~C~~~-~~~~~~~w~k~-g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s  203 (316)
T 3vh8_G          130 VKSGERVILQCWSD-IMFEHFFLHKE-GISKDPSRLVGQIHD----GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS  203 (316)
T ss_dssp             EETTCCEEEEEEES-SCCSEEEEEET-TCCSCCEEEECEEET----TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCC
T ss_pred             cCCCCeEEEEEcCC-CCCcEEEEEEC-CCccccceeeeeecC----CCceEEEEECCCChhhCceEEEEEecCCCCcccc
Confidence            77899999999995 46678899999 554432211111000    0123479999999999999999999988742   


Q ss_pred             --EEEEEEEEec
Q psy16261         88 --EGVIKVYNIG   97 (158)
Q Consensus        88 --~~~~~l~v~~   97 (158)
                        +..+.|.|..
T Consensus       204 ~~s~~~~l~V~~  215 (316)
T 3vh8_G          204 APSDPLDIVVTG  215 (316)
T ss_dssp             CCCCCEEEEEEC
T ss_pred             CCCCCEEEEecC
Confidence              3345555543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.16  E-value=2.3e-10  Score=78.47  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++ +..+   .         ...++.+....     ..+.|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D   81 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-----TDFTLTIDPVEADD   81 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGGG
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC-----CEEEEEECCCCHHH
Confidence            77788999999999999999998999998842 1111   0         12455544322     12379999999999


Q ss_pred             CeEEEEEEEcCCCceEE-EEEEEEec
Q psy16261         73 FGTYKCNAKNTLGGSEG-VIKVYNIG   97 (158)
Q Consensus        73 ~G~Y~C~a~n~~g~~~~-~~~l~v~~   97 (158)
                      +|.|.|.+.|..+.... .+.|.|..
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           82 TAIYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CeEEEEEEEcCCCceeCCCEEEEEcC
Confidence            99999999998765422 34555544

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.2e-10  Score=73.88  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCe---eeecC-----CeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGS---LIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      +..++..+.+.+|+++.|.|.+.+. +.+.+.|++.++.   .+...     .|+..............+|.|.+++.+|
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   90 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPAD   90 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTT
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHH
Confidence            3445667889999999999999876 5678999998322   12111     1221110000000012379999999999


Q ss_pred             CeEEEEEEEcCCCc--eE----EEEEEEEeccCCCCCccc
Q psy16261         73 FGTYKCNAKNTLGG--SE----GVIKVYNIGYFGSDTQYV  106 (158)
Q Consensus        73 ~G~Y~C~a~n~~g~--~~----~~~~l~v~~~~~~~~~~~  106 (158)
                      +|.|.|.+.+..+.  ..    ..+.|.|...+..|...+
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~P~i~~  130 (136)
T 2d9c_A           91 AGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSG  130 (136)
T ss_dssp             CEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCCCCCCC
T ss_pred             CEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCCCcEee
Confidence            99999999886431  12    357788887665444433

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.16  E-value=4e-10  Score=76.12  Aligned_cols=86  Identities=17%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             CceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeee------------cC--CeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIH------------EG--SRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ...+.+.+|+++.|.|.+.+ .+.+.+.|++.+...+.            ..  .|+.+..       ..++|.|.+++.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~-------~~~sL~I~~v~~   78 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK-------TNGALRIYNVSK   78 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECT-------TTCCEEECSCCG
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeC-------CCccEEEcCCCH
Confidence            45677999999999999854 34679999994232221            11  3443311       113699999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         71 SDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      +|+|.|.|.+.+.. .....+.|.|...+
T Consensus        79 ~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~  106 (180)
T 2dru_A           79 EDRGDYYMRMLHET-EDQWKITMEVYEMV  106 (180)
T ss_dssp             GGCEEEEEEEESSS-EEEEEEEEEEECCC
T ss_pred             HHCeEEEEEEEcCC-eEEEEEEEEEECCC
Confidence            99999999998876 55666777776543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.16  E-value=2.1e-10  Score=82.09  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             EEEecCCCEEEEeEEeecCC-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESYPK-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+.|. +.+.|+++ +..+..........   ..+...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       196 ~~~~~g~~v~l~C~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          196 LVRIRGEAAQIVCSASSVDVNFDVFLQHN-NTKLAIPQQSDFHN---NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             BCCCSSSCEEEEEEEEESSSCCEEECCBS-SCCCCCCBEEEEET---TEEEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             eeEecCCCEEEEEEecCCCCceEEEEeCC-CcccccCccceecc---ceeeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence            33468999999999998775 46778888 65544332221111   112234579999999999999999999999999


Q ss_pred             EEEEEEEEeccC
Q psy16261         88 EGVIKVYNIGYF   99 (158)
Q Consensus        88 ~~~~~l~v~~~~   99 (158)
                      ...+.|.|....
T Consensus       272 ~~~~~l~V~~~~  283 (292)
T 4dkd_C          272 STSMFFRVVESA  283 (292)
T ss_dssp             EEEEEECC----
T ss_pred             eeEEEEEEeeCC
Confidence            988888877653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.15  E-value=5.5e-11  Score=82.39  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCCe----eee----cCCeEEEEEe----------ecccceEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPK-PITFWTHENGS----LIH----EGSRYHMWTE----------KFSSYKFYMRLY   64 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~----~~~----~~~~~~~~~~----------~~~~~~~~~~l~   64 (158)
                      ..+..+.+.+|+.+.|.|.+.+.|. +.+.|++++..    .+.    ....+.....          ...    .+.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~L~   80 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS----QGRLV   80 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT----TCCEE
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC----CceEE
Confidence            3567788999999999999999985 89999976222    111    1111111111          000    12499


Q ss_pred             EcCCCCCCCeEEEEEEEcCC-CceEEEEEEEEeccCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTL-GGSEGVIKVYNIGYFG  100 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~  100 (158)
                      |.+++.+|+|.|+|.+.|.. +.....+.|.|...+.
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  117 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE  117 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEecCC
Confidence            99999999999999999987 7777778888776543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.15  E-value=3.9e-10  Score=70.00  Aligned_cols=77  Identities=19%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +..++..+.+.+|+++.|.|.+.+.+.+.+.|++.. +.   .+.         ...|+.+....     ...+|.|.++
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~L~I~~v   80 (109)
T 2q20_A            6 MTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSG-----TDFTFTISSL   80 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccC-----CEEEEEECCC
Confidence            344567788999999999999998888899999862 11   111         12455554321     1247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        81 ~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           81 QPEDIATYYCQQYDN   95 (109)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ChhhCEEEEEEEeeC
Confidence            999999999999875

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.14  E-value=6.1e-10  Score=68.42  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=59.2

Q ss_pred             EEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeec---CC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          9 IGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHE---GS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+..|+.+.|.|.+.+ .|.|.++|.|-+++....   ..  +......+ + . ....|.|..|..+|+|.|.|.|.|
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~-n-~-s~fiL~f~~V~~sDsG~YrCsAn~  100 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENR-S-V-PVFVLHFKPIHLSDNGSYSCSTNF  100 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSS-S-S-CEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccC-C-c-eeEEEEEeeEEEcCCccEEEEeeC
Confidence            45788999999999977 679999999874532221   11  11111111 1 0 123699999999999999999999


Q ss_pred             CCCceE-EEEEEEEec
Q psy16261         83 TLGGSE-GVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~-~~~~l~v~~   97 (158)
                      ..|... ...+|.|.+
T Consensus       101 ~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A          101 NSQVINSHSVTIHVRE  116 (122)
T ss_dssp             TTEEEECCCEEEEEC-
T ss_pred             CCCceeeeEEEEEEEe
Confidence            988774 455666654

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.14  E-value=2.4e-10  Score=73.25  Aligned_cols=90  Identities=13%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEee---cCCCeeEEEcCCCee----eec-----------------------C--CeEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVES---YPKPITFWTHENGSL----IHE-----------------------G--SRYHM   49 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g---~p~p~i~W~~~~~~~----~~~-----------------------~--~~~~~   49 (158)
                      +..++..+.+.+|+++.|.|.+..   .+.+.+.|++.+...    +..                       .  .|+.+
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            345667788999999999999864   577899999873211    110                       0  22222


Q ss_pred             EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC-----CceEEEEEEEEec
Q psy16261         50 WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL-----GGSEGVIKVYNIG   97 (158)
Q Consensus        50 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~-----g~~~~~~~l~v~~   97 (158)
                      ...      ...+|.|.+++.+|+|.|.|.+.+..     |.....+.|.|..
T Consensus        87 ~~~------~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           87 ANL------AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             SCT------TSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             ecC------CCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence            110      01369999999999999999999853     4445677777764

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.14  E-value=4.4e-10  Score=70.05  Aligned_cols=78  Identities=31%  Similarity=0.420  Sum_probs=56.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce----eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS----LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      +...|..+.+.+|+++.|.|.+.+.  +.+.+.|++.. +.    .+....|+........   ...+|.|.+++.+|+|
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~DsG   79 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS---KSFSLRISDLRVEDSG   79 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCC---CEEEEEECCCChhcCE
Confidence            4456777889999999999999876  56799999851 21    2223356654432111   1347999999999999


Q ss_pred             EEEEEEEc
Q psy16261         75 TYKCNAKN   82 (158)
Q Consensus        75 ~Y~C~a~n   82 (158)
                      .|.|.+.|
T Consensus        80 ~Y~C~~~~   87 (111)
T 2ywz_A           80 TYKCQADY   87 (111)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            99999998

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.14  E-value=3e-10  Score=77.34  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+. .+.+.|+|+ +..+.... ++.....+    .....|.|.+++.+|+|.|+|.|.|..+..
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~-g~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~  183 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKE-GEDEHPQCLNSQPHARG----SSRAIFSVGPVSPSRRWWYRCYAYDSNSPY  183 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC-------CEEEC----------CCEEEEEECCCCTTSCEEEEEEEECTTSTT
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEEC-CCccCCccccccccCCC----cceeEEEecccCcccCeEEEEEEEeCCCCc
Confidence            357899999999999998 789999999 66543221 11111110    012379999999999999999999987632


Q ss_pred             -----EEEEEEEEe
Q psy16261         88 -----EGVIKVYNI   96 (158)
Q Consensus        88 -----~~~~~l~v~   96 (158)
                           +..+.|.|.
T Consensus       184 ~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          184 EWSLPSDLLELLVL  197 (198)
T ss_dssp             EECCCCCCEEEEEE
T ss_pred             cccCcCceEEEEec
Confidence                 344555553

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.14  E-value=3.5e-10  Score=71.53  Aligned_cols=77  Identities=21%  Similarity=0.322  Sum_probs=56.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee-c--------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH-E--------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..+..+.+.+|+++.|.|.+.+.+.+.+.|++.. +   ..+. .        ..|+.+.... .    ..+|.|.++
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-~----~~~L~I~~v   80 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSG-R----DYSFSISNL   80 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEECSC
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccC-C----EEEEEECCC
Confidence            344567788999999999999999888899999852 1   1121 1        2456554321 1    237999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.|.
T Consensus        81 ~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           81 EPEDAATYYCLQYDN   95 (119)
T ss_dssp             CGGGCEEEEEEECGG
T ss_pred             ChHHCEEEEEEEccC
Confidence            999999999999885

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.14  E-value=1.4e-11  Score=72.77  Aligned_cols=61  Identities=18%  Similarity=0.351  Sum_probs=48.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCC-CCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v-~~~d~G~Y~C~a~n   82 (158)
                      +++...+..|+++.|.|.+.|.|.  ++|+|+ +..+...      ..+        .|.|.++ ..+|+|.|+|.|.+
T Consensus         5 ~p~~~v~~~G~~v~L~C~~~g~P~--i~W~kd-g~~l~~~------~~~--------~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            5 NIEYKVSISGTSVELTCPLDSDEN--LKWEKN-GQELPQK------HDK--------HLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCCEEEEETTEEEEECSSCCCSS--CEEEET-TEECTTC------CSS--------CCBCCSCCTTTTCSCEEEECSS
T ss_pred             CCceeEEEcCCeEEEEEECCCCCc--EEEEEC-CEECcCC------CCC--------EEEECccCccCcCEEEEEEEcc
Confidence            344455778999999999999883  999999 7776533      122        5999996 77999999999875

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.13  E-value=3.1e-10  Score=76.09  Aligned_cols=62  Identities=16%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+.+|+.+.|.|.+.+.|.|  .+.|+++ +..+........          ...|.|.  +.+|+|.|+|.+.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~-~~~l~~~~~~~~----------~~~l~i~--~~~d~G~Y~C~~~n~   71 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALPGQ----------KTEFKVD--SDDQWGEYSCVFLPE   71 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCCCS----------EEEEEEC--GGGCCEEEEEEEEST
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeC-CEEeecccccCC----------cEEEEEe--chhhCeEEEEEEECC
Confidence            357889999999999998877  8999999 777765432211          1246666  688999999999983

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.13  E-value=3.9e-10  Score=77.34  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             CceEEEecCCCEEEEeEEeecC---CCeeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP---KPITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..+.+.+|+.+.|.|.+.+.|   .+.+.|++++ +..+   .         ...|+......     ..+.|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~   81 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-----DKAALTITGAQ   81 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCC
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeC-----CEEEEEECCCC
Confidence            7777899999999999999987   4789999862 1111   0         12455444322     12479999999


Q ss_pred             CCCCeEEEEEEEcCCCceE-EEEEEEEec
Q psy16261         70 KSDFGTYKCNAKNTLGGSE-GVIKVYNIG   97 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   97 (158)
                      .+|+|.|.|.+.|..+... ..+.|.|..
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  110 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLG  110 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEec
Confidence            9999999999999876432 234555543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.13  E-value=9.5e-11  Score=83.09  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=64.1

Q ss_pred             CceEEEecCCCEEEEeEE---eecCCCeeEEEcCCCeeeecC---------------------CeEEEEEeecccceEEE
Q psy16261          6 SQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHEG---------------------SRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~---~g~p~p~i~W~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~   61 (158)
                      +....+.+|+.+.|.|.+   .+.|.|.+.|+++++......                     .++.+...   .....+
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~  201 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD---ISRNDG  201 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSC---GGGTBC
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeecc---CCCCeE
Confidence            455678899999999999   667899999999534321110                     01111100   001123


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      .|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       202 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  239 (268)
T 3mj6_A          202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE  239 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             EEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence            79999999999999999999999988888888885543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.13  E-value=3.9e-10  Score=79.17  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEc--CCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTH--ENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+.+.|++  + +..+.            ...++......     ...+|.|.+++.
T Consensus       141 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~-g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~  214 (247)
T 2ghw_B          141 SPATLSLSPGERATLSCRASQSVRSNLAWYQQKP-GQAPRPLIYDASTRATGIPDRFSGSGSG-----TDFTLTISRLEP  214 (247)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECT-TSCCEEEEETTTEECTTCCTTEEEECSS-----SEEEEEECSCCG
T ss_pred             cCCEEEecCCCcEEEEEEeCCCccceEEEEEECC-CCCcEEEEEEeccCCCccCCCEEEecCC-----CeEEEEECcCCH
Confidence            3445668899999999999999999999998  4 33221            12345443221     124699999999


Q ss_pred             CCCeEEEEEEEcCCCceE-EEEEEEEe
Q psy16261         71 SDFGTYKCNAKNTLGGSE-GVIKVYNI   96 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~-~~~~l~v~   96 (158)
                      +|+|.|.|.|.|..+... ..+.|.|.
T Consensus       215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          215 EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999999999998654432 24566664

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.13  E-value=5.1e-10  Score=77.80  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee---------ecCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI---------HEGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ...+..+.+.+|+++.|.|.+.+.|.+.+.|++.+ +.   .+         ....++......     ..++|.|.+++
T Consensus        28 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~  102 (237)
T 3sob_L           28 TQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG-----TDFTLTISSLQ  102 (237)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCC
T ss_pred             EeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCC-----CEEEEEECCCC
Confidence            34466678999999999999999999999998841 11   11         112455554222     13479999999


Q ss_pred             CCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         70 KSDFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      .+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEec
Confidence            999999999999876532 2234454433

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.13  E-value=1.9e-10  Score=76.96  Aligned_cols=77  Identities=18%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             EEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+. +.|.+.+.|+++ +..+....     ..        +.|.|.++..+|+|.|+|.|.|..+..
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~-----~~--------~~L~i~~v~~~d~G~Y~C~a~n~~~~~  160 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKD-GEALKYWY-----EN--------HNISITNATVEDSGTYYCTGKVWQLDY  160 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEET-TEECCSCC-----CS--------SEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEEC-CEEEeeec-----CC--------CeEEECCCCcccCEEEEEEEEeCCcce
Confidence            3577999999999994 566779999999 77663221     01        269999999999999999999974443


Q ss_pred             -EEEEEEEEeccC
Q psy16261         88 -EGVIKVYNIGYF   99 (158)
Q Consensus        88 -~~~~~l~v~~~~   99 (158)
                       +..+.|.|...+
T Consensus       161 ~s~~~~l~V~~~p  173 (176)
T 1f2q_A          161 ESEPLNITVIKAP  173 (176)
T ss_dssp             ECCCEEEEEECSC
T ss_pred             EecCEEEEEecCC
Confidence             445788887765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.13  E-value=1.8e-10  Score=84.17  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCee----eec-----CCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSL----IHE-----GSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      |..++..+.+.+|+.+.|.|.+.+. |.+.+.|+++ +..    +..     ..++.............+.|.|.+++.+
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~-~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRG-AGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEES-CSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCCceEEEEEC-CCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            4556788889999999999999997 8899999998 432    111     1233322111000011236999999999


Q ss_pred             CCeEEEEEEEcCCCceE-----EEEEEEEecc
Q psy16261         72 DFGTYKCNAKNTLGGSE-----GVIKVYNIGY   98 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~-----~~~~l~v~~~   98 (158)
                      |+|.|+|.+.|..+...     ..+.|.|...
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~  116 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAK  116 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBC
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEec
Confidence            99999999999866421     2345555544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.13  E-value=3.5e-10  Score=76.88  Aligned_cols=70  Identities=13%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+.+|+.+.|.|.+.+. .+.+.|+|+ +..+............    ...+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~~-~~~~~w~k~-g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSP-MDTFLLCKE-RAAHPLLCLRSEHGAQ----QHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEEE-EEEEEEEET-TCCCGGGSEEEEEEEE----EEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCCC-CCEEEEEeC-CCcccceeeccccccc----CcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            46789999999999884 568999999 6654333211111000    1124799999999999999999999876

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.12  E-value=4.9e-10  Score=76.82  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--Cee--ee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--GSL--IH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +.++ .+.+.+|+.+.|.|.+.  |.+.+.|++++  ...  +.         ...|+......     ..++|.|.+++
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~   76 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG-----NTASLTVSGLQ   76 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEEESCC
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC-----CEEEEEECCCC
Confidence            3445 77899999999999998  88899999841  211  11         22455544322     13479999999


Q ss_pred             CCCCeEEEEEEEcCCC--ceEEEEEEEEec
Q psy16261         70 KSDFGTYKCNAKNTLG--GSEGVIKVYNIG   97 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~   97 (158)
                      .+|+|.|.|.+.|..+  .....+.|.|..
T Consensus        77 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  106 (211)
T 3tv3_L           77 TDDEAVYYCGSLVGNWDVIFGGGTKLTVLG  106 (211)
T ss_dssp             GGGCEEEEEEEEETTTEEEECCCEEEEECC
T ss_pred             hhHCEEEEEEEecCCCceeECCCceEEEeC
Confidence            9999999999999887  334456676664

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.12  E-value=5.6e-11  Score=84.43  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...        +        .+.  .++.+|+|.|+|.|.|..|
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~-~~~~~~~--------g--------~~~--~v~~~d~G~Y~C~a~N~~G  252 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPI--------G--------ESV--TVTRDLEGTYLCRARSTQG  252 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEET-TTEECCT--------T--------SCE--ECCGGGCEEEEEEEEETTE
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEEC-CcccCCC--------C--------cEE--EeehhhCeEEEEEEECCCC
Confidence            3456788999999999999999999999999 5422111        1        122  3788999999999999999


Q ss_pred             ceEEEEEEEEec
Q psy16261         86 GSEGVIKVYNIG   97 (158)
Q Consensus        86 ~~~~~~~l~v~~   97 (158)
                      .....+.|.|.+
T Consensus       253 ~~~~~~~l~V~~  264 (265)
T 2oz4_A          253 EVTREVTVNVLS  264 (265)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cEEEEEEEEEec
Confidence            999999988865

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.12  E-value=3e-10  Score=70.40  Aligned_cols=78  Identities=17%  Similarity=0.327  Sum_probs=56.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +..++..+.+.+|+++.|.|.+.+.+.+.+.|++.. +   ..+.         ...|+.+....     ...+|.|.++
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSA-----TDFTLTISSV   78 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCS-----SEEEEEESSC
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCC-----CEEEEEECCC
Confidence            345567778999999999999998888899999852 1   1121         12344433211     1247999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+.+..
T Consensus        79 ~~~DsG~Y~C~~~~~~   94 (108)
T 1qfw_M           79 QAEDFADYHCGQTYNH   94 (108)
T ss_dssp             CTTCCSEEEEEECSSS
T ss_pred             ChhhCEEEEEEEccCC
Confidence            9999999999998853

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.11  E-value=4.3e-10  Score=70.25  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             ecCceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCe-------eee---------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGS-------LIH---------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      .++..+.+.+|+.+.|.|.+.+ .....+.|++....       .+.         ...|+.+....   .....+|.|.
T Consensus         2 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I~   78 (116)
T 2or8_A            2 DSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHI---SEGDVSLTIE   78 (116)
T ss_dssp             CCCEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCG---GGTBCCEEES
T ss_pred             CCcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCC---CCCeEEEEEC
Confidence            3566788999999999999876 34567999987311       111         12333322110   0112369999


Q ss_pred             CCCCCCCeEEEEEEEcCCCce--EEEEEEEEec
Q psy16261         67 SLSKSDFGTYKCNAKNTLGGS--EGVIKVYNIG   97 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~   97 (158)
                      +++.+|+|.|.|.+.+..+..  ...+.|.|.+
T Consensus        79 ~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           79 NSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             SCCGGGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             CCCcccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence            999999999999999875443  5556666644

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.10  E-value=1.3e-09  Score=75.13  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+.                 ...|+.+.....   ...++|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L   81 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETS---ATTAYL   81 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGG---GTEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecC---CCEEEE
Confidence            345567799999999999999875  6789999862 22111                 124555543210   012479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCce----EEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGS----EGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..+..    ...+.|.|..
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             EECCCCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            999999999999999999986422    2245666655

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.10  E-value=1.3e-10  Score=82.46  Aligned_cols=87  Identities=22%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEc--CCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTH--ENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++  + +..+.            ...++......     ...+|.|.+++.+
T Consensus       146 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~-g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~  219 (257)
T 1f3r_B          146 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKL-GEAPKLLIYNTNSLQTGIPSRFSGSGSG-----TDYTLTISSLQPE  219 (257)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECT-TSCCEEEEETTTEECTTCCTTEEEEEEB-----TEEEEEECSCCGG
T ss_pred             CCEEEEcCCCCEEEEEEECCcCCCcEEEEEECC-CCCcEEEEEEccCCCCCcCCCEEEecCC-----CEEEEEECCCChh
Confidence            344557789999999999999989999999  4 33221            12455443222     1237999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         72 DFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      |+|.|.|.|.|........+.|.|...
T Consensus       220 D~G~Y~C~a~n~~~~~g~gt~l~V~~~  246 (257)
T 1f3r_B          220 DVATYFCYQYNNGYTFGAGTKLELKAA  246 (257)
T ss_dssp             GCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred             hCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence            999999999997511122345555443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.10  E-value=3.8e-11  Score=87.39  Aligned_cols=69  Identities=12%  Similarity=0.096  Sum_probs=49.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+. ..+.+|+.+.|.|.+.+. .+.+.|+|+ +..+...... ....        +.|.|.+++.+|+|.|+|.|.|
T Consensus        28 ~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~-g~~~~~~~~~-~~~~--------~~L~I~~v~~~D~G~Y~C~a~~   95 (316)
T 3vh8_G           28 SAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKE-DRIHIPIFHG-RIFQ--------ESFNMSPVTTAHAGNYTCRGSH   95 (316)
T ss_dssp             EEESC-SEEETTSCEEEEEEBTTB-CCSEEEEES-SCSSSCHHHH-CCBS--------SCEEECSCCGGGCEEEEEEEBC
T ss_pred             eccCC-CccCCCCCEEEEEEccCC-CceEEEEeC-CCccceeecC-Ccce--------EEEEECCCCcccCeEEEEEEEc
Confidence            33444 347799999999999988 688999999 6543221000 0011        2699999999999999999986


Q ss_pred             C
Q psy16261         83 T   83 (158)
Q Consensus        83 ~   83 (158)
                      .
T Consensus        96 ~   96 (316)
T 3vh8_G           96 P   96 (316)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.10  E-value=8.4e-10  Score=68.88  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---e-------ecCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---I-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +...+..+.+.+|+.+.|.|.+.+.+ +.+.|++.. +..   +       ....|+.+....  ......+|.|.+++.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~~v~~   80 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--ERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCS--SSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEcc--CCCCEEEEEECCCCh
Confidence            34556777899999999999998765 789998762 111   1       112444443211  011234799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy16261         71 SDFGTYKCNAKNTLG   85 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g   85 (158)
                      +|+|.|.|.+.|..|
T Consensus        81 ~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           81 EDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hhCEEEEEEEecCCC
Confidence            999999999999765

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.10  E-value=5.5e-10  Score=78.54  Aligned_cols=91  Identities=23%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC----eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG----SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+.+.|++.+.    ..+.         ...|+......     ...+|.|.++
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   81 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG-----TDYSLTISNL   81 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC-----CEEEEEEccC
Confidence            4456777889999999999999999999999998521    1110         12455443322     1237999999


Q ss_pred             CCCCCeEEEEEEEcCCCceE-EEEEEEEec
Q psy16261         69 SKSDFGTYKCNAKNTLGGSE-GVIKVYNIG   97 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   97 (158)
                      +.+|+|.|.|.+.|..+... ....|.|..
T Consensus        82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           82 EQEDIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             ChhhCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            99999999999999766432 233455543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.10  E-value=2.5e-10  Score=75.65  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=55.5

Q ss_pred             EEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+. +.|.+.+.|+++ +..+....     ..        ..|.|.++..+|+|.|+|.|.|..|..
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~-----~~--------~~L~i~~v~~~d~G~Y~C~a~n~~g~~  160 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQN-GKSQKFSH-----LD--------PTFSIPQANHSHSGDYHCTGNIGYTLF  160 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEET-TEEEEEES-----SC--------CEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEEC-CeEccccC-----CC--------CeEEEEeccccCCEEEEEEEEeCcCcc
Confidence            3577899999999995 456689999999 76553211     11        269999999999999999999998863


Q ss_pred             -EEEEEEEE
Q psy16261         88 -EGVIKVYN   95 (158)
Q Consensus        88 -~~~~~l~v   95 (158)
                       +..+.|.|
T Consensus       161 ~s~~~~l~V  169 (170)
T 3ry4_A          161 SSKPVTITV  169 (170)
T ss_dssp             ECCCEEEEE
T ss_pred             ccccEEEEE
Confidence             44555554

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.10  E-value=3.4e-10  Score=70.05  Aligned_cols=77  Identities=16%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +...+..+.+.+|+++.|.|.+.+.+.+.+.|++.. +.   .+. .        ..|+.+.... .    ..+|.|.++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~----~~~L~I~~v   78 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-T----DFVFTIENT   78 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSC
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccC-C----EEEEEECCC
Confidence            344567788999999999999998888899999852 11   121 1        2456554321 1    237999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           79 LSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CHHHCEEEEEEEeeC
Confidence            999999999999875

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.10  E-value=6.7e-11  Score=81.43  Aligned_cols=73  Identities=16%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             ecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCC-CCCCCeEEEEEEEcCCCce-
Q psy16261         12 RLAAPLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSL-SKSDFGTYKCNAKNTLGGS-   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v-~~~d~G~Y~C~a~n~~g~~-   87 (158)
                      .+|+.+.|.|.  +.|.|.+.|+++ +..+...  .+.......        .|.|.++ +.+|+|.|+|.|.|..|.. 
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~-~~~l~~~~~~~~~~~~~~--------~L~I~~v~~~~D~G~Y~C~A~N~~g~~~  194 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHN-DKNIGGDEDDKNIGSDED--------HLSLKEFSELEQSGYYVCYPRGSKPEDA  194 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEET-TEEESCCTTCTTEEEETT--------EEEETTCCHHHHCEEEEEEETTSCGGGS
T ss_pred             ecCCcEEEEcC--CCCCCceEEEEC-CEECCCccCCceEecCCC--------EEEEeeCCccccCEEEEEEeccCCCCce
Confidence            38999999999  889999999999 7766443  122122233        7999999 9999999999999999963 


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      +..+.|.+
T Consensus       195 s~~l~l~~  202 (204)
T 1sy6_A          195 NFYLYLRA  202 (204)
T ss_dssp             SCEEEEEE
T ss_pred             eEEEEEEE
Confidence            45555544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=4.7e-10  Score=79.31  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |+..+.. .+.+|+++.|.|.+.+ +.+.+.|+|+ +..+... .+.       ........|.|.+++.+|+|.|+|.+
T Consensus        10 i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~-g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A           10 IWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFE-GSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             EEEESCS-EEETTCCEEEEEECCT-TCCEEEEEET-TEEEEEECCSS-------CTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEEC-CCccccccccc-------cCCcceeEEEecCCCcccCeEEEEEE
Confidence            3444544 5889999999999875 4568899999 6654311 000       00011247999999999999999999


Q ss_pred             EcCCCce--EEEEEEEEec
Q psy16261         81 KNTLGGS--EGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~~--~~~~~l~v~~   97 (158)
                      .|..+..  +..+.|.|.+
T Consensus        80 ~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             EETTEECCCCCCEEEEEEC
T ss_pred             ecCCccccCCcceEEEeec
Confidence            8864422  3345555543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.10  E-value=8.9e-10  Score=85.31  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=63.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++ +..+   .         ...|+......     ..+.|.|.+++
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~   78 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSG-----TSASLAISGLE   78 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCC-----CEEEEEECCCC
Confidence            34566778999999999999999999999999873 1111   1         12344432211     13479999999


Q ss_pred             CCCCeEEEEEEEcCCCce---EEEEEEEEe
Q psy16261         70 KSDFGTYKCNAKNTLGGS---EGVIKVYNI   96 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~---~~~~~l~v~   96 (158)
                      .+|+|.|+|.+.|..|..   ...+.|.|.
T Consensus        79 ~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~  108 (523)
T 2rcj_C           79 AEDESDYYCASWNSSDNSYVFGTGTKVTVL  108 (523)
T ss_pred             hhhCEEEEEEEccCCCccccccCceEEEec
Confidence            999999999999987632   234566664

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.10  E-value=5.4e-10  Score=79.04  Aligned_cols=89  Identities=18%  Similarity=0.189  Sum_probs=61.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+.+.|++.. +..+.            ...|+......     ...+|.|.+++.+
T Consensus       144 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~  218 (256)
T 3umt_A          144 SPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG-----SDYSLTISSLESE  218 (256)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET-----TEEEEEECSCCGG
T ss_pred             CCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC-----CEEEEEECCCChh
Confidence            345567889999999999999999999999841 11111            12455444322     1246999999999


Q ss_pred             CCeEEEEEEEcCCCceEE-EEEEEEecc
Q psy16261         72 DFGTYKCNAKNTLGGSEG-VIKVYNIGY   98 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~~-~~~l~v~~~   98 (158)
                      |+|.|.|.+.|..+.... .+.|.|...
T Consensus       219 D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          219 DFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             HCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            999999999986554422 466766654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.09  E-value=2.1e-09  Score=86.52  Aligned_cols=92  Identities=20%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             ceEEEecCCCEEEEeEEeec--CCCeeEEEcCCCeeeecCCeEEEEEee---cccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESY--PKPITFWTHENGSLIHEGSRYHMWTEK---FSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|+++ +..+............   .......+.|.|.+++.+|.|.|+|.+.
T Consensus       232 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  310 (772)
T 3v2a_R          232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS  310 (772)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTCCCEEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred             CceEEecCCcEEEEEEEecCCCCceeEEEecC-CccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence            33578899999999999984  4568999999 6554332221110000   0112234579999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccC
Q psy16261         82 NTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~   99 (158)
                      |..+.....+.|.|...+
T Consensus       311 ~~~~~~~~~~~l~V~~~p  328 (772)
T 3v2a_R          311 SGLMTKKNSTFVRVHEKP  328 (772)
T ss_dssp             CSSCEEEEEEEEEEECCC
T ss_pred             cCCcceeEEEEEEEeCCC
Confidence            999888778888776644

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.09  E-value=1.7e-10  Score=84.24  Aligned_cols=77  Identities=13%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             EecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+|+.+.|.|.+.|.+++  .+.|+++ +..+............++.+...+.|.|..+..+|.|.|+|.|.|..|...
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLEN-GNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEET-TEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEEC-CeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence            4589999999999996444  7999999 777654322222333323455556799999999999999999999988763

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.09  E-value=8.7e-10  Score=70.26  Aligned_cols=92  Identities=20%  Similarity=0.291  Sum_probs=63.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC----CCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP----KPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |+.++..+.+.+|+++.|.|.+.+.+    .+.+.|++.. +   ..+.         ...|+......     ...+|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~sL~   78 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSE-----TDFTLT   78 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEE
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCC-----CEEEEE
Confidence            45567778899999999999998876    5689999852 1   1111         12455554222     124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCceE-EEEEEEEecc
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGSE-GVIKVYNIGY   98 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~   98 (158)
                      |.+++.+|+|.|.|.+.+...... ..+.|.|...
T Consensus        79 I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  113 (126)
T 4ffy_L           79 IDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKGG  113 (126)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC-
T ss_pred             ECCCCHHHCEEEEEEEecCCCcEECCCEEEEEecC
Confidence            999999999999999998654332 2466666654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.08  E-value=1.4e-09  Score=73.98  Aligned_cols=77  Identities=10%  Similarity=0.168  Sum_probs=53.8

Q ss_pred             ecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         12 RLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        12 ~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      ..|+.+.|.|.+. |.|.|.+.|+++ +..+..... ....... +.+...+.   ..+...|.|.|+|.|.|..|..+.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~-g~~l~~~~~-~~~~~~~~~~~~~~~~---~~v~~~d~g~Y~C~a~n~~~~~s~  193 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLEN-GEELNAINT-TVSQDPETELYAVSSK---LDFNMTTNHSFMCLIKYGHLRVNQ  193 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEES-SCEECCSEE-EEEECTTTCCEEEEEE---EEEETTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEEC-CEECccccc-eEEecCCCcEEEEEEE---EEEEecCCCEEEEEEecCcceeee
Confidence            4577899999995 999999999999 777654422 2222211 23332233   344568999999999999998877


Q ss_pred             EEEE
Q psy16261         90 VIKV   93 (158)
Q Consensus        90 ~~~l   93 (158)
                      .+.+
T Consensus       194 ~~~~  197 (201)
T 1dr9_A          194 TFNW  197 (201)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7664

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.08  E-value=6.2e-10  Score=78.23  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...+..+.+.+|+++.|.|.+.+.|.+.+.|+++. +   ..+.         ...|+.+....     ...+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   78 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-----TDFTLSINSV   78 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCC-----CEEEEEECCC
Confidence            455677788999999999999999999999999852 1   1111         12455554322     1237999999


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         69 SKSDFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      +.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus        79 ~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~  108 (242)
T 2znx_A           79 ETEDFGMYFCQQSNSXPYTFGGGTKLEITG  108 (242)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             ChHHCEEEEEeEecCCceEECCCEEEEEcC
Confidence            9999999999999975432 2234555544

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.08  E-value=8.2e-10  Score=68.43  Aligned_cols=78  Identities=28%  Similarity=0.392  Sum_probs=56.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce----eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS----LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      +...|..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +.    .+....|+.+......   ...+|.|.+++.+|+|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~DsG   79 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGS---NSASLTIRDLRVEDSG   79 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCC---CEEEEEECCCCcccCE
Confidence            45567778899999999999998763  5689999862 11    2223356654432111   1347999999999999


Q ss_pred             EEEEEEEc
Q psy16261         75 TYKCNAKN   82 (158)
Q Consensus        75 ~Y~C~a~n   82 (158)
                      .|.|.+.+
T Consensus        80 ~Y~C~~~~   87 (108)
T 2coq_A           80 TYKCKAYR   87 (108)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999987

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.08  E-value=3.2e-09  Score=66.11  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCC----eee-e--------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENG----SLI-H--------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~----~~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+..+.+.+|+++.|.|...+.... .+.|++...    ..+ .        ..+|+.+.....   ....+|.|.+++.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~~~~   83 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQR---DFIFTVTMEDLRM   83 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETT---TTEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCc---CCEEEEEEccCCH
Confidence            3556789999999999999875443 699998732    111 1        123454442210   1134799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         71 SDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      +|+|.|.|.+.+........+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (113)
T 1zox_A           84 SDAGIYWCGITKGGLDPMFKVTVNIGPV  111 (113)
T ss_dssp             GGCEEEEEEECCSSSCCEEEEEEEEECC
T ss_pred             HHCEEEEEeeEcCCCCccEEEEEEEEcC
Confidence            9999999999987555577778877654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.08  E-value=3.8e-10  Score=79.73  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=62.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC----eeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP----ITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p----~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+..+.+.+|+++.|.|.+.+.+.+    .+.|+++. +..+.            ...|+......     ..++|.|.+
T Consensus       139 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~  213 (253)
T 3uzq_A          139 TPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSR-----TDFTLTINP  213 (253)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESS
T ss_pred             cCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCC-----CEEEEEECC
Confidence            4555678899999999999998887    89999841 11111            11345443222     124799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEE-EEEEEEeccCC
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEG-VIKVYNIGYFG  100 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~  100 (158)
                      ++.+|+|.|.|.+.|..+.... .+.|.|...+.
T Consensus       214 v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~  247 (253)
T 3uzq_A          214 VEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE  247 (253)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred             CCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence            9999999999999997655433 46677766543

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.07  E-value=6.8e-10  Score=68.89  Aligned_cols=84  Identities=24%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec--------------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE--------------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ...+.+.+|+++.|.|.. .+.+.+.+.|++..+..+..              ..|+.+..   .    ..+|.|.+++.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~---~----~~sL~I~~v~~   82 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE---N----NGALHISNVRK   82 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT---T----TCCEEESSCCG
T ss_pred             CCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC---C----CccEEECCCCc
Confidence            455779999999999998 67777899999853332210              12443321   1    13699999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         71 SDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      +|+|.|.|.+.+.. .....+.|.|.+
T Consensus        83 ~DsG~Y~C~v~~~~-~~~~~~~L~V~d  108 (110)
T 2ptt_A           83 EDKGTYYMRVLRET-ENELKITLEVFD  108 (110)
T ss_dssp             GGCEEEEEEEESSS-BCCEEEEEEEEC
T ss_pred             ccCeEEEEEEEcCC-CcEEEEEEEEEc
Confidence            99999999998765 344466776654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.07  E-value=4e-10  Score=70.03  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=49.5

Q ss_pred             EecCCCEEEEeEEeecCCC-----eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         11 ARLAAPLTLDCHVESYPKP-----ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p-----~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +.+|+.+.|.|.+.+.+..     .+.|+|+ +..+..     ....        +.|.|.+++.+|+|.|.|.+.|..+
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~-g~~l~~-----~~~~--------~~l~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKD-GRIVQS-----RGLS--------SEFQIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEET-TEEEEE-----EESC--------CEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEEC-CcCccC-----CCcc--------cEEEeCccCcccCeEEEEEEEeCCC
Confidence            6789999999999876544     3889999 765531     1111        2699999999999999999999765


Q ss_pred             ce---EEEEEEEEec
Q psy16261         86 GS---EGVIKVYNIG   97 (158)
Q Consensus        86 ~~---~~~~~l~v~~   97 (158)
                      ..   +..+.|.|.+
T Consensus        85 ~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           85 QVWKQSPQLEIRVQG   99 (108)
T ss_dssp             SSEEECCCEEECCBC
T ss_pred             ceeccCCCEEEEEEe
Confidence            32   3345555544

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.07  E-value=8.6e-10  Score=77.47  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|     .+.+.|++.+ +..   +.         ...|+.+....     ...+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L   78 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-----TDFTL   78 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEE
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCC-----CEEEE
Confidence            45567778899999999999999988     6899999852 111   11         12455554322     12379


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus        79 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  113 (247)
T 1svz_A           79 KISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKG  113 (247)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EECCCCHHHCEEEEEEEccCCccEECCCEEEEEEC
Confidence            999999999999999999976542 2234555544

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.07  E-value=2.8e-11  Score=82.44  Aligned_cols=79  Identities=23%  Similarity=0.431  Sum_probs=59.3

Q ss_pred             EEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCe---------EEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          9 IGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSR---------YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      ..+.+|+.+.|.|.+ .+.|.|.+.|+++ +..+....+         +....       ..+.|.|.++..+|.|.|+|
T Consensus       117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C  188 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNP-------TTGELVFDPLSASDTGEYSC  188 (209)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCT-------TTCCEEESSCCGGGCCCEEE
T ss_pred             cceecCCEEEEEEeCCCCCCCceeEEEEC-CeeCCCccccceeeeccceEEcC-------CcceEEEEeccccCCeEEEE
Confidence            347889999999997 9999999999999 666554321         11110       01369999999999999999


Q ss_pred             EEEcCCCce--EEEEEEEE
Q psy16261         79 NAKNTLGGS--EGVIKVYN   95 (158)
Q Consensus        79 ~a~n~~g~~--~~~~~l~v   95 (158)
                      .|.|..|..  +..+.|.|
T Consensus       189 ~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          189 EARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             EEECSSSCCEECCCBCCEE
T ss_pred             EEeCCcCcccccccEEEEE
Confidence            999999988  33444444

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.07  E-value=1.1e-10  Score=78.60  Aligned_cols=66  Identities=14%  Similarity=0.045  Sum_probs=52.4

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      .+..+.|.|.+.|.|.|.+.|+++ +..+....+                +.|..+..+|+|.|+|.|.|.+|.......
T Consensus       109 ~~~~v~L~C~~~g~p~p~i~W~~~-g~~l~~~~~----------------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~  171 (176)
T 1hng_A          109 ECSNATLTCEVLEGTDVELKLYQG-KEHLRSLRQ----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEV  171 (176)
T ss_dssp             ETTTTEEEEECSSCSSCEEEEEET-TEEEEEESS----------------SEEEEECSCCSSCEEEEEEETTEEEEEEEC
T ss_pred             cCCcEEEEEEecCCCCcEEEEEEC-CEECCCCCc----------------EEEEEEEccCCeEEEEEEEecCCCceeccc
Confidence            455799999999999999999999 776644322                334467799999999999999998877766


Q ss_pred             EEE
Q psy16261         93 VYN   95 (158)
Q Consensus        93 l~v   95 (158)
                      |.+
T Consensus       172 l~~  174 (176)
T 1hng_A          172 VNC  174 (176)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.06  E-value=6.8e-11  Score=80.12  Aligned_cols=60  Identities=23%  Similarity=0.437  Sum_probs=49.5

Q ss_pred             ecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+|+.+.|.|.+   |.|.+.|+|+ +..+.....    ..        +.|.|.++..+|+|.|+|.|.|..|..
T Consensus       120 ~~G~~v~l~C~~---p~p~i~W~k~-g~~i~~~~~----~~--------~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTIKWLKD-GSIISPLNA----TK--------NTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEET-TEECCCSSC----CS--------SCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCCeEEEEeeC---CCCeEEEEEC-CEECcccCC----Cc--------ceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            389999999999   8899999999 777653322    11        259999999999999999999998765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.06  E-value=7.2e-11  Score=81.06  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             cCCCEEEEeEEeecC-C-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261         13 LAAPLTLDCHVESYP-K-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV   90 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p-~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~   90 (158)
                      +|+.+.|.|.+.|.+ . +.+.|+++ +..+..+.........+..+...+.|.|..+..+|.|.|+|.|.|..+.....
T Consensus       128 ~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  206 (213)
T 3mj8_L          128 KTNQATLVCMINGFYPADVAVTWEAD-GTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS  206 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEeeceeCCCeEEEEEcC-CcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence            599999999999963 3 38999999 87775431111111122344455679999999999999999999998766555


Q ss_pred             EE
Q psy16261         91 IK   92 (158)
Q Consensus        91 ~~   92 (158)
                      +.
T Consensus       207 ~~  208 (213)
T 3mj8_L          207 LS  208 (213)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.06  E-value=1.1e-09  Score=74.95  Aligned_cols=90  Identities=13%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             cCceEEEecCCCEEEEeEEeec-------CCCeeEEEcCCCee------ee-----------cCCeEEEEEeecccceEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY-------PKPITFWTHENGSL------IH-----------EGSRYHMWTEKFSSYKFY   60 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~-------p~p~i~W~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~   60 (158)
                      .+..+.+.+|+.+.|.|.+.+.       +.+.+.|+++ +..      +.           ...|+.+.....   ...
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~   81 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRD-GEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQ---KKN   81 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEET-TCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGG---GTB
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEec-CCCCcccceEecCCcccccCccccCceEEeccCC---CCe
Confidence            4667789999999999999864       5678999998 431      11           123554432110   012


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCCceE----EEEEEEEecc
Q psy16261         61 MRLYIGSLSKSDFGTYKCNAKNTLGGSE----GVIKVYNIGY   98 (158)
Q Consensus        61 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~----~~~~l~v~~~   98 (158)
                      ++|.|.+++.+|+|.|.|.+.+..+...    ..+.|.|...
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  123 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL  123 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC
Confidence            2699999999999999999998763221    2455666543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.06  E-value=2.3e-09  Score=75.11  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-------------CeeeecC----CeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-------------GSLIHEG----SRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-------------~~~~~~~----~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++..+..+.+.+|+.+.|.| ..+.+.+.+.|++..             +......    .|+.+.....    ...+|.
T Consensus         5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~sL~   79 (245)
T 4ei6_B            5 VLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDG----SYFTLK   79 (245)
T ss_dssp             CEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTT----SCEEEE
T ss_pred             eEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccC----ceEEEE
Confidence            34567778899999999999 778888999999820             1111111    4555543221    124799


Q ss_pred             EcCCCCCCCeEEEEEEEcC----CCceEEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNT----LGGSEGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.+.    .......+.|.|..
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (245)
T 4ei6_B           80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE  116 (245)
T ss_dssp             ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence            9999999999999999953    22223345666654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.06  E-value=8.5e-10  Score=79.02  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=59.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC----eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG----SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++.    ..+.         ...|+.+....     ...+|.|.++
T Consensus        15 v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v   89 (276)
T 3auv_A           15 MTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG-----TDFTLTISSL   89 (276)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccC-----CeEEEEEccC
Confidence            3445677788999999999999999999999998621    1121         12455554322     1237999999


Q ss_pred             CCCCCeEEEEEEEcCCCc
Q psy16261         69 SKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+|.|.|.+.|..+.
T Consensus        90 ~~~DsG~Y~C~~~n~~~~  107 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPP  107 (276)
T ss_dssp             CGGGCEEEEEEECSSSSC
T ss_pred             ChhhCEEEEEEEecCCcc
Confidence            999999999999997543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.06  E-value=1.4e-09  Score=75.88  Aligned_cols=77  Identities=22%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC----eee---------ecCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENG----SLI---------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.|.+.|++++.    ..+         ....++.+.....   ...+.|.|.+++.+
T Consensus       133 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~  209 (238)
T 2p1y_A          133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKR---EKKLSLHIADSQPG  209 (238)
T ss_dssp             ECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETT---TTEEEEEETTCCGG
T ss_pred             cCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCC---CCeEEEEEcCCCHH
Confidence            3455678899999999999999999999998621    111         1123444432110   01247999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy16261         72 DFGTYKCNAKNTL   84 (158)
Q Consensus        72 d~G~Y~C~a~n~~   84 (158)
                      |+|.|+|.|.|..
T Consensus       210 D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          210 DSATYFCAAIDTN  222 (238)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             HCEEEEEEEeeCC
Confidence            9999999999974

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.05  E-value=1.7e-09  Score=69.21  Aligned_cols=94  Identities=13%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-C---e-eeec---------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-G---S-LIHE---------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~---~-~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +..+..+.+.+|+.+.|.|.+.+.. ...+.|++.. +   . .+..         .+|+.+.....   ....+|.|.+
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~---~~~~sL~I~~   81 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPN---GRDFHMSVVR   81 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTT---SSEEEEEESS
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCC---CCEEEEEECC
Confidence            4456678899999999999998765 4579998641 1   1 1111         13555543111   1134799999


Q ss_pred             CCCCCCeEEEEEEEcCCCce----EEEEEEEEeccC
Q psy16261         68 LSKSDFGTYKCNAKNTLGGS----EGVIKVYNIGYF   99 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~~~   99 (158)
                      ++.+|+|.|.|.+.+..+..    ...+.|.|...+
T Consensus        82 ~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           82 ARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             CCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            99999999999999987655    345777777654

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.05  E-value=2.5e-09  Score=67.42  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             cCceEEEecCCCEEEEeEEeec----CCCeeEEEcCCCe------eeec-------------CCeEEEEEeecccceEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY----PKPITFWTHENGS------LIHE-------------GSRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~----p~p~i~W~~~~~~------~~~~-------------~~~~~~~~~~~~~~~~~~   61 (158)
                      .+..+.+.+|+++.|.|.+...    +.+.+.|++.+..      .+..             ..|+.+....   ....+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   81 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP---SWKDG   81 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG---GGTBC
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCC---cCCeE
Confidence            4566789999999999998653    4668999886220      1100             1233322110   00123


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCc--eEEEEEEEEeccC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGG--SEGVIKVYNIGYF   99 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~   99 (158)
                      +|.|.+++.+|+|.|.|.+.+..+.  ....+.|.|...+
T Consensus        82 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             EEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            7999999999999999999998765  3667788887654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.05  E-value=1.3e-09  Score=76.81  Aligned_cols=89  Identities=16%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Ceee----------e--cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GSLI----------H--EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~~~----------~--~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|     .+.+.|++++ +..+          .  ...|+.+....     ..++|.
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~  116 (254)
T 2c1o_A           42 TQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSG-----TDFTLK  116 (254)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEE
T ss_pred             EeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCC-----CEEEEE
Confidence            3446677899999999999999988     4899999742 2211          1  12455554322     123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCceEE-EEEEEEe
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGSEG-VIKVYNI   96 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~   96 (158)
                      |.+++.+|+|.|.|.+.|..+.... ...|.|.
T Consensus       117 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A          117 ISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             ESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             ECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence            9999999999999999998654321 2344444

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.04  E-value=1.5e-09  Score=67.59  Aligned_cols=77  Identities=12%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC----eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG----SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +...+..+.+.+|+++.|.|.+.+.+.+.+.|++...    ..+.         ...|+......     ...+|.|.++
T Consensus         7 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~L~I~~v   81 (111)
T 1i3g_L            7 LTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSG-----TDFTLTISNV   81 (111)
T ss_dssp             EEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCC-----CEEEEEECCC
Confidence            3455677889999999999999888778999998621    1121         12455554321     1237999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        82 ~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           82 QSEDLADYFCQQYSS   96 (111)
T ss_dssp             CGGGCSEEEEEECSS
T ss_pred             CHHHCEEEEEEEecC
Confidence            999999999999875

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.04  E-value=2.1e-09  Score=73.41  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC---
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG---   85 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g---   85 (158)
                      ..+.+|+++.|.|.+.+ +.+.+.|+|+ +..+..........    .......|.|.+++.+|+|.|+|.+.|...   
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~~~----~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~   90 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHRE-GMFNDTLRLIGEHH----DGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQ   90 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEE-SSSCEEEEEECEEE----TTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTC
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEEC-CCcCCcceeeeecC----CCCceEEEEeccCCcccCeEEEEeEecCCCCcc
Confidence            45789999999999974 7789999999 65443211100000    001224799999999999999999987521   


Q ss_pred             --ceEEEEEEEEec
Q psy16261         86 --GSEGVIKVYNIG   97 (158)
Q Consensus        86 --~~~~~~~l~v~~   97 (158)
                        ..+..+.|.|..
T Consensus        91 ~~~~s~~~~l~V~~  104 (201)
T 1nkr_A           91 VSAPSDPLDIVIIG  104 (201)
T ss_dssp             CCCCCCCEEEEEEC
T ss_pred             ccCCCCCEEEEeec
Confidence              223445555554

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.04  E-value=3.6e-09  Score=67.61  Aligned_cols=81  Identities=28%  Similarity=0.320  Sum_probs=58.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce----eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS----LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      |+.+|..+.+.+|+++.|.|.+.+.  +.+.+.|++.. +.    .+...+|+........   ...+|.|.+++.+|+|
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~---~~~sL~I~~v~~~DsG   79 (126)
T 3moq_A            3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVEDSG   79 (126)
T ss_dssp             EEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCC---CEEEEEECcCChHhCE
Confidence            4566778889999999999999875  46789999841 21    1223356655433211   1347999999999999


Q ss_pred             EEEEEEEcCCC
Q psy16261         75 TYKCNAKNTLG   85 (158)
Q Consensus        75 ~Y~C~a~n~~g   85 (158)
                      .|.|.+.+..+
T Consensus        80 ~Y~C~~~~~~~   90 (126)
T 3moq_A           80 TYKCQAFYVFF   90 (126)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEcCC
Confidence            99999988654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.04  E-value=8.6e-10  Score=75.62  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++ +..+.            ...|+.+....     ....|.|.+++.+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~D   80 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-----TTATLTISGAQPED   80 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTCCGGG
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC-----CEEEEEECcCCccc
Confidence            77788999999999999999888899998852 22221            13455554322     12379999999999


Q ss_pred             CeEEEEEEEcC
Q psy16261         73 FGTYKCNAKNT   83 (158)
Q Consensus        73 ~G~Y~C~a~n~   83 (158)
                      +|.|.|.+.|.
T Consensus        81 ~G~Y~C~~~n~   91 (212)
T 1nfd_E           81 EAAYYCLSSYG   91 (212)
T ss_dssp             CSEEEEEEEET
T ss_pred             CEEEEEEEEcc
Confidence            99999999973

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.04  E-value=1.1e-09  Score=77.64  Aligned_cols=117  Identities=10%  Similarity=0.123  Sum_probs=77.8

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC-Cce
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL-GGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~-g~~   87 (158)
                      ..+.+|+.+.|.|.+.  |.+.+.|  + +..+.....             .+.|.|..+..+|.|.|+|.|.|.. |..
T Consensus       108 ~~v~~G~~v~l~C~~~--p~~~i~W--~-g~~~~~~~~-------------~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~  169 (265)
T 2oz4_A          108 PEVSEGTEVTVKCEAH--PRAKVTL--N-GVPAQPLGP-------------RAQLLLKATPEDNGRSFSCSATLEVAGQL  169 (265)
T ss_dssp             SEEETTCEEEEEEECC--TTSEEEE--S-SCSSSCCSS-------------EECCEEECCGGGTTEEEEEEEEEECSSSE
T ss_pred             ceecCCCcEEEEEEcc--CCCEEEE--C-CEEccCCCC-------------cEEEEEccccccCCceEEEEEEcCCCCCc
Confidence            3467899999999998  8999999  5 655532210             1258899999999999999998544 665


Q ss_pred             E---EEEEEEEeccCCCCCc-----------------------ccch-------------hhhhhhcccccccccCcccc
Q psy16261         88 E---GVIKVYNIGYFGSDTQ-----------------------YVTD-------------EEMQRTNQIARSKWGSERTN  128 (158)
Q Consensus        88 ~---~~~~l~v~~~~~~~~~-----------------------~~~~-------------~~~~~~~~~~~~~~g~~~~~  128 (158)
                      .   ..+.|.|...+.....                       +...             ..+......+.|.|      
T Consensus       170 ~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~~~~v~~~d~G~Y------  243 (265)
T 2oz4_A          170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTY------  243 (265)
T ss_dssp             EEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEE------
T ss_pred             ccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCcEEEeehhhCeEE------
Confidence            4   5566666554321100                       0000             01112234555666      


Q ss_pred             eEeeeccCCceEEEEccccCCC
Q psy16261        129 QIARSKWGSGYRYTSGPIRLPD  150 (158)
Q Consensus       129 ~~~~~~~~~g~~~~~~~~~~~~  150 (158)
                       .|.+.|..|....+..|.|..
T Consensus       244 -~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          244 -LCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             -EEEEEETTEEEEEEEEEEEEC
T ss_pred             -EEEEECCCCcEEEEEEEEEec
Confidence             999999999999988887643

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.03  E-value=9e-10  Score=67.85  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=57.1

Q ss_pred             eEEEecCCCEEEEeEEeecCCC---eeEEEcCCCe------e-ee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP---ITFWTHENGS------L-IH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~------~-~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+.+|+++.|.|.+.+.+.+   .+.|++....      . +.         ...|+.+....   .....+|.|.++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~---~~~~~sL~I~~v   79 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL---NKGDVSLIIKNV   79 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCG---GGTBCCEEECSC
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCc---cCCcEeEEEccC
Confidence            4568899999999999876543   4899996211      0 11         11233322110   011236999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261         69 SKSDFGTYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                      +.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        80 ~~~D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           80 TLDDHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             CGGGCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             CChhCeEEEEEEEcCCcccceEEEEEEE
Confidence            9999999999999987666666666554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.03  E-value=1.6e-09  Score=76.44  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ...+..+.+.+|+.+.|.|.+.+.|     .+.+.|++++ +..   +.         ...|+.+...+     ...+|.
T Consensus        38 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~  112 (252)
T 3bkj_L           38 TQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSG-----TDFTLR  112 (252)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEE
T ss_pred             EeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccC-----CEEEEE
Confidence            3446677899999999999999987     6899999862 111   11         12455444322     123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCceE-EEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGSE-GVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.|..+... ..+.|.|..
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            999999999999999998765321 224455543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.03  E-value=7.2e-09  Score=72.16  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=55.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee---e---e-----------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL---I---H-----------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~---~---~-----------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+++.|.|.+.+.+  .+.+.|++.+ +..   +   .           ...|+.+.....   ....+|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   82 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTS---SSTAYMQ   82 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEE
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCC---CCeEEEE
Confidence            45667799999999999999877  6789999862 121   1   1           124555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      |.+++.+|+|.|.|.+.|..
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~  102 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGW  102 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCCcccCEEEEEEECCCC
Confidence            99999999999999999863

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.03  E-value=3.6e-10  Score=78.19  Aligned_cols=72  Identities=14%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             EecCCCE-EEEeEE-eecCCCeeEEEcCCCeeeecCC----eEEEEEe----ecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261         11 ARLAAPL-TLDCHV-ESYPKPITFWTHENGSLIHEGS----RYHMWTE----KFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus        11 ~~~g~~v-~l~C~~-~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +.+|+.+ .|.|.+ .+.|.|.+.|+++ +..+....    ++.+...    ..+.+...+.|.|......|.|.|+|.|
T Consensus       130 ~~~g~~~~~l~C~~~~~~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a  208 (231)
T 2pet_A          130 VMEDSAQEIATCNSRNGNPAPKITWYRN-GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA  208 (231)
T ss_dssp             TTCCSEEEEEEEEEEEEBSCCEEEEEET-TEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEE
T ss_pred             ecCCCceEEEEEEeECcccCCEEEEEEC-CccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEE
Confidence            4477777 999999 8999999999999 77765543    4444322    1133444567888755556699999999


Q ss_pred             EcC
Q psy16261         81 KNT   83 (158)
Q Consensus        81 ~n~   83 (158)
                      .|.
T Consensus       209 ~n~  211 (231)
T 2pet_A          209 HYS  211 (231)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            994

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.03  E-value=1.9e-09  Score=76.27  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPK-PITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+. +.+.|++.. +..+.            ...++.+....     ...+|.|.+++
T Consensus       154 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~  228 (256)
T 3juy_B          154 QAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-----TDFTLTITRVE  228 (256)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCC
T ss_pred             ecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-----CEEEEEECCCC
Confidence            3455667889999999999999886 899998831 11111            12455544322     12369999999


Q ss_pred             CCCCeEEEEEEEcCCCc
Q psy16261         70 KSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~   86 (158)
                      .+|+|.|.|.+.|....
T Consensus       229 ~~DsG~Y~C~~~~~~~~  245 (256)
T 3juy_B          229 PEDFALYYCQVYGASSY  245 (256)
T ss_dssp             GGGCSEEEEEECCSSCC
T ss_pred             HhHCEEEEEEEeeCCCc
Confidence            99999999999986443

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.03  E-value=1.4e-09  Score=69.31  Aligned_cols=83  Identities=22%  Similarity=0.372  Sum_probs=54.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCe---eeecC-----CeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGS---LIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      |..++..+.+.+|+++.|.|.+.+. +.+.+.|++.++.   .+...     .++..............+|.|.+++.+|
T Consensus         6 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   85 (127)
T 2jju_A            6 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPAD   85 (127)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGG
T ss_pred             EEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHH
Confidence            3445677889999999999999876 5678999997321   12211     2333211000000012369999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16261         73 FGTYKCNAKNTL   84 (158)
Q Consensus        73 ~G~Y~C~a~n~~   84 (158)
                      +|.|.|.+.|..
T Consensus        86 sG~Y~C~~~~~~   97 (127)
T 2jju_A           86 AGTYYCVKFRKG   97 (127)
T ss_dssp             CEEEEEEEEECC
T ss_pred             CEEEEEEEEcCC
Confidence            999999999863

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.02  E-value=2.8e-09  Score=75.50  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee----------ecCCeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI----------HEGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~----------~~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      |+..+..+.+.+|+.+.|.|.+.+.|.+.+.|++.. +.   .+          ....|+.+.....   ....+|.|.+
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~   82 (256)
T 3tf7_C            6 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS---DSSFHLRKAS   82 (256)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT---TTEEEEEESS
T ss_pred             EEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC---CCEEEEEECC
Confidence            445677788999999999999999999999998841 11   11          1123444421110   1134799999


Q ss_pred             CCCCCCeEEEEEEEcCCC
Q psy16261         68 LSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g   85 (158)
                      ++.+|+|.|.|.+.|..+
T Consensus        83 v~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           83 VHRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             CCGGGCSEEEEEEECTTC
T ss_pred             CCcccCEEEEEEEecCCC
Confidence            999999999999999765

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.02  E-value=2.1e-09  Score=76.23  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC-----eeEEEc--CCCeeee------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP-----ITFWTH--ENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p-----~i~W~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+     .+.|++  + +..+.            ...++......     ....|.|
T Consensus       127 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~-g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I  200 (256)
T 1nqb_A          127 TPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP-GQSPKLLIYKVSNRFSGVPDRFSGSGSG-----TDFTLKI  200 (256)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT-TSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEE
T ss_pred             cCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECC-CCCcEEEEEEeCCCCCccCCcEEEEccC-----CEEEEEE
Confidence            3555678899999999999998875     999999  4 43321            12355443221     1247999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.|..... ...+.|.|..
T Consensus       201 ~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          201 SRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            9999999999999999864433 2245666654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.02  E-value=2e-09  Score=75.05  Aligned_cols=79  Identities=14%  Similarity=0.223  Sum_probs=55.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---------------ecCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---------------HEGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |...+..+.+.+|+.+.|.|. .+.|.+.+.|++++ +..+               ....|+.+......    ..+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I   77 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQE----NFSLIL   77 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSS----BCEEEE
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCc----eEEEEE
Confidence            455677788999999999999 78889999999851 1110               01234544431111    137999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+++.+|+|.|.|.+.|..|
T Consensus        78 ~~v~~~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           78 ELATPSQTSVYFCASGDLGQ   97 (238)
T ss_dssp             SSCCGGGCEEEEEEEEC---
T ss_pred             ecCCcccCeeEEEEEEeCCC
Confidence            99999999999999999865

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.02  E-value=4.9e-10  Score=77.89  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC----
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG----   85 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g----   85 (158)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|+ +..+... .. .  ..     ..+.|.|.+++.+|+|.|+|.|.|...    
T Consensus       116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~-g~~~~~~-~~-~--~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~  185 (218)
T 1uct_A          116 VLMPGENISLTCSSAHIPFDRFSLAKE-GELSLPQ-HQ-S--GE-----HPANFSLGPVDLNVSGIYRCYGWYNRSPYLW  185 (218)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEET-TCSSCCS-EE-E--CS-----SSEEEECCSCCGGGCEEEEEEEECTTSTTEE
T ss_pred             ccCCCCCEEEEEeCCCCCCCEEEEEEC-CCccccc-cc-C--CC-----ccCEEEEccCCcccCEEEEEEEEcCCCCCcC
Confidence            578999999999877888889999999 6654331 11 1  11     013799999999999999999998642    


Q ss_pred             -ceEEEEEEEEeccC
Q psy16261         86 -GSEGVIKVYNIGYF   99 (158)
Q Consensus        86 -~~~~~~~l~v~~~~   99 (158)
                       ..+..+.|.|.+..
T Consensus       186 s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          186 SFPSNALELVVTDSI  200 (218)
T ss_dssp             CCCCCCEEEEEC---
T ss_pred             CCCCCcEEEEEecCC
Confidence             22445677776543

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.02  E-value=3.6e-09  Score=69.06  Aligned_cols=93  Identities=18%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..+..+.+.+|+++.|.|.+.+.+...+.|++.. +   +.+.         ...|+.+....     ...+|.|.++
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-----~~~sL~I~~l   77 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSG-----TDFTLTISNL   77 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEECSC
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccC-----CEEEEEEccC
Confidence            556677788999999999999988777789999851 1   1121         12456554221     1347999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         69 SKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      +.+|+|.|.|.+.+........+.|.|....
T Consensus        78 ~~~DsG~Y~C~~~~~~~~fg~gt~L~V~~~~  108 (143)
T 3u6r_L           78 EPEDFAVYYCQQRSDWVTFGGGTKVEIKAAA  108 (143)
T ss_dssp             CGGGCEEEEEEECSSBCEECCCEEEEEC---
T ss_pred             cccCCEEEEEEEecCCCEECCCEEEEECCCC
Confidence            9999999999998764122233566666543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.01  E-value=2.5e-09  Score=75.58  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC-eeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP-ITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+..+.+.+|+.+.|.|.+.+.+.+ .+.|++.. +..+.            ...|+......     ...+|.|.+++.
T Consensus       147 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~  221 (257)
T 3gkz_A          147 SPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSG-----TSYSLTISSMEA  221 (257)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCG
T ss_pred             CCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCC-----CEEEEEECCCCh
Confidence            3455678899999999999998888 99999841 22111            01344443222     124699999999


Q ss_pred             CCCeEEEEEEEcCCCceEE-EEEEEEeccC
Q psy16261         71 SDFGTYKCNAKNTLGGSEG-VIKVYNIGYF   99 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~   99 (158)
                      +|+|.|.|.+.+....... .+.|.|...+
T Consensus       222 ~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          222 EDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             HHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence            9999999999986544322 3566666544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=77.58  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=43.8

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+.+|+.+.|.|.+.+.| +.+.|+|+ +..+...........   .......|.|.+++.+|+|.|+|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~~p-~~~~W~k~-g~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF-DRFILTEE-GDHKLSWTLDSQLTP---SGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             -------CEEEEEESSCC-SEEEEEEC----CCEEEEECEECT---TSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEEcCCCC-CEEEEEcc-CCccccccccccccc---CCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            567899999999999998 89999999 655432111100000   001124799999999999999999999764

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.01  E-value=8.7e-10  Score=68.60  Aligned_cols=77  Identities=18%  Similarity=0.348  Sum_probs=55.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC----CCeeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP----KPITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      +...+..+.+.+|+.+.|.|.+.+.+    .+.+.|++.. +.   .+. .        ..|+.+....     ...+|.
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~L~   78 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-----TDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-----TEEEEE
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccC-----CEEEEE
Confidence            34456677899999999999998876    4689999852 11   111 1        2455554321     123799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.+.
T Consensus        79 I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           79 IDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             ECCCCcccCEEEEEEEecC
Confidence            9999999999999999875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.01  E-value=1.4e-09  Score=74.57  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=59.1

Q ss_pred             EEecCCCEEEEeEEeecCC---CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         10 GARLAAPLTLDCHVESYPK---PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .+.+|+.+.|.|.+.+.++   +.+.|+++ +..+.... +.........+...+.|.|.....+|.|.|+|.|.|..|.
T Consensus       102 ~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~-~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          102 PLEAGKPITVKCSVADVYPFDRLEIDLLKG-DHLMKSQE-FLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEET-TEEEEEEE-CCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             EEcCCCCEEEEEEECCcCCCCCeEEEEEeC-CeECcccc-cccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            3778999999999998644   37899999 76654321 0000000001222345788888888999999999998876


Q ss_pred             -------eEEEEEEEEeccC
Q psy16261         87 -------SEGVIKVYNIGYF   99 (158)
Q Consensus        87 -------~~~~~~l~v~~~~   99 (158)
                             .+..+.|.|.+.|
T Consensus       180 ~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          180 MDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             CTTSCSEEEEEEECCEECCC
T ss_pred             CCCcceeEeeEEEEEEecCC
Confidence                   3456777777765

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.01  E-value=2.1e-09  Score=67.18  Aligned_cols=79  Identities=23%  Similarity=0.349  Sum_probs=56.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee----eecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL----IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      +...+..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +..    +....|+.......   ....+|.|.+++.+|+|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~~~~~DsG   79 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSG---SKSFSLRINDLTVEDGG   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETT---TTEEEEEECSCCGGGCE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCC---CCEEEEEECCCChhhCE
Confidence            45567778899999999999998765  5689999862 111    12235665543211   11347999999999999


Q ss_pred             EEEEEEEcC
Q psy16261         75 TYKCNAKNT   83 (158)
Q Consensus        75 ~Y~C~a~n~   83 (158)
                      .|.|.+.+.
T Consensus        80 ~Y~C~~~~~   88 (113)
T 1sq2_N           80 TYRCGLGVA   88 (113)
T ss_dssp             EEEEEECBT
T ss_pred             EEEEEEEeC
Confidence            999999873

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.01  E-value=2.1e-09  Score=75.42  Aligned_cols=94  Identities=12%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCe-----eEEEcCCCeeee-------cCCeEEEEEee-----cccceEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPI-----TFWTHENGSLIH-------EGSRYHMWTEK-----FSSYKFYMRLYIGS   67 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~-----i~W~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~l~i~~   67 (158)
                      .+..+.+.+|+.+.|.|.+.+.|.+.     +.|++++.....       .+.........     ........+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45666789999999999999988876     999986221100       00100000000     00000123599999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      ++.+|+|.|+|.+.|..+.....+.|.|...
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~  119 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS  119 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecC
Confidence            9999999999999998887777777777653

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.01  E-value=2.4e-09  Score=66.93  Aligned_cols=77  Identities=18%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCC------CeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPK------PITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~------p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      +...|..+.+.+|+.+.|.|.+.+.+.      +.+.|++.. +   ..+.         ...|+.+....     ...+
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~   78 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSG-----TDFT   78 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEE
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecC-----CEEE
Confidence            345577788999999999999988763      689999852 1   1111         12455554321     1237


Q ss_pred             EEEcCCCCCCCeEEEEEEEcC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        79 L~I~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           79 LTISSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             EEESSCCGGGCEEEEEEECSS
T ss_pred             EEECCCCcccCEEEEEEEeeC
Confidence            999999999999999999875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.01  E-value=1.7e-09  Score=82.15  Aligned_cols=81  Identities=12%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             EEEecCCCEEEEeEEeec-C--CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe--EEEEEEEcC
Q psy16261          9 IGARLAAPLTLDCHVESY-P--KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG--TYKCNAKNT   83 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~-p--~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G--~Y~C~a~n~   83 (158)
                      ..+.+|+.+.|.|.+.|. |  .+.+.|+++ +..+..  ++......     ....+.+ +++.+|.|  .|+|.+.|.
T Consensus       198 ~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~-~~~~~~--~~~~~~~~-----~~~~~~~-~v~~~d~G~~~Y~C~a~n~  268 (450)
T 1z7z_I          198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALG-DQRLNP--TVTYGNDS-----FSAKASV-SVTAEDEGTQRLTCAVILG  268 (450)
T ss_dssp             SEEETTSEEEEEEEEESCTTGGGCEEEEEET-TEECCC--EEEEETTE-----EEEEEEE-ECCGGGCEEEEEEEEEEET
T ss_pred             eeEEeCCcEEEEEEeeCCCCCCceEEEEeCC-CEeCCc--eEEecCCc-----eeEEEEE-EeEhhhCCcEEEEEEEccC
Confidence            567899999999999998 7  689999999 766543  22221111     1112233 78999999  999999999


Q ss_pred             CCceEEEEEEEEecc
Q psy16261         84 LGGSEGVIKVYNIGY   98 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~   98 (158)
                      .|.......|.|...
T Consensus       269 ~g~~~~~~~l~V~~~  283 (450)
T 1z7z_I          269 NQSQETLQTVTIYSF  283 (450)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CccEEEEEEEEEecC
Confidence            998888888877763

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.00  E-value=1.1e-10  Score=72.16  Aligned_cols=71  Identities=18%  Similarity=0.263  Sum_probs=50.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+.. .+.+|++|.|.|.+.+. ...+.|+|+ +..+... ++.       .......|.|.+++.+|+|.|.|.+.|
T Consensus         9 ~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~-g~~~~~~-~~~-------~~~~~~~l~I~~v~~~dsG~Y~C~~~n   77 (105)
T 2vsd_A            9 SLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLN-GTLRFDK-EKD-------KEQDAAEFSFAVTNLEDAGTYQCRYQV   77 (105)
T ss_dssp             EEESCS-SCCTTCEEEEEEECCSS-CEEEEEEET-TEEEEEE-EEC-------TTCSEEEEEEECCSGGGCEEEEEEEEE
T ss_pred             EeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEEC-Cccceee-ecc-------CCCCEEEEEECCCCHHHCeEEEEEEEc
Confidence            344444 47789999999999775 467889999 6654321 110       011124799999999999999999998


Q ss_pred             CC
Q psy16261         83 TL   84 (158)
Q Consensus        83 ~~   84 (158)
                      ..
T Consensus        78 ~~   79 (105)
T 2vsd_A           78 SE   79 (105)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=86.98  Aligned_cols=89  Identities=13%  Similarity=0.058  Sum_probs=66.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeE-EE--cCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITF-WT--HENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+.+.+|+.+.|.|.+.|.|.|.+. |+  ++ +..+.......+.     .....++|.|.++...|.|.|+|.|.|
T Consensus       171 ~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~-g~~l~~~~~~~~~-----~~~~~~~l~I~~~~~~d~g~Y~c~A~n  244 (731)
T 2v5y_A          171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID-VRDAPLKEIKVTS-----SRRFIASFNVVNTTKRDAGKYRCMIRT  244 (731)
T ss_dssp             CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESS-SCCEEEEEEEECC-----SSEEEEEEEECSCCTTTCEEEEEEEEE
T ss_pred             ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCC-CccccccceEEec-----cccceEEEEEcccccccCeEEEEEEEC
Confidence            345678999999999999999999987 88  66 6665433211111     111235899999999999999999999


Q ss_pred             CCCc-eEEEEEEEEeccCC
Q psy16261         83 TLGG-SEGVIKVYNIGYFG  100 (158)
Q Consensus        83 ~~g~-~~~~~~l~v~~~~~  100 (158)
                      ..|. .+..+.|.|...+.
T Consensus       245 ~~G~~~s~~~~l~V~~~P~  263 (731)
T 2v5y_A          245 EGGVGISNYAELVVKEPPV  263 (731)
T ss_dssp             TTEEEECCCEEEEEECCCC
T ss_pred             CCCCcceeeEEEEEecCCC
Confidence            9997 56667777776554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.00  E-value=2.3e-09  Score=77.03  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEc--CCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTH--ENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      +..+.+.+|+.+.|.|.+.+.| +.+.|++  + +..+.            ...++......     ...+|.|.+++.+
T Consensus       169 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~-g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~  241 (282)
T 1qok_A          169 PAIMSASPGEKVTITCSASSSV-SYMHWFQQKP-GTSPKLWIYSTSNLASGVPARFSGSGSG-----TSYSLTISRMEAE  241 (282)
T ss_dssp             CSEEEECTTCCEEEEEEESSCC-SCCEEEEECT-TSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSCCGG
T ss_pred             CCEEEEcCCCcEEEEEEecCCC-ceEEEEEECC-CCCcEEEEEEecCCCCcccCCeEEecCC-----CEEEEEEccCChh
Confidence            4456688999999999999999 9999999  4 43221            12455443221     1237999999999


Q ss_pred             CCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         72 DFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      |+|.|.|.+.|..+.. ...+.|.|..
T Consensus       242 DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          242 DAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             HCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            9999999999864433 2345666654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.00  E-value=5.5e-09  Score=73.00  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-------------Ceeeec---CCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-------------GSLIHE---GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..++..+.+.+|+.+.|.|.+.+ +.+.+.|++..             +.....   ..|+.+.....    ..++|.|
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~sL~I   79 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDD----YHSEMNM   79 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTT----SCEEEEE
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCC----CEEEEEE
Confidence            345677788999999999999876 78899999821             111111   13555543221    1247999


Q ss_pred             cCCCCCCCeEEEEEEEcC--C-CceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNT--L-GGSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~--~-g~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.+.  . ......+.|.|..
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           80 SALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             CSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             CcCChhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence            999999999999999832  1 1223345566653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.99  E-value=3.3e-09  Score=78.16  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+.                 ...|+.+.....   ...++|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~   82 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTS---ASTAYVE   82 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETT---TTEEEEE
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecC---CCEEEEE
Confidence            45567799999999999999874  6789999862 22110                 124555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.|..+.....+.|.|..
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             ECCCCcccCEEEEEEEecCcceecCcEEEEEec
Confidence            999999999999999999655444456676663

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.99  E-value=3e-09  Score=72.92  Aligned_cols=89  Identities=18%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee----------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH----------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .+..+.+.+|+++.|.|.+.+.|  .+.+.|++++ +..+.                ...|+.+......   ...+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I   82 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSK---NQYYLDL   82 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGG---TEEEEEE
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCC---CEEEEEE
Confidence            35556789999999999999875  4799998752 11110                1345655432210   1247999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.|.. .....+.|.|..
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~  113 (210)
T 3d9a_H           83 NSVTTEDTATYYCANWDGD-YWGQGTLVTVSA  113 (210)
T ss_dssp             CSCCGGGCEEEEEEETTSS-CBCCCEEEEECC
T ss_pred             CCCCcccCEEEEEEEecCc-ccccceEEEecc
Confidence            9999999999999999864 222234555543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.99  E-value=1.4e-10  Score=79.63  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=54.5

Q ss_pred             cCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCe--EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSR--YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .|+.+.|.|.+.| .|.+ .+.|+++ +..+.....  .......++.+...+.|.|.++..+|.|.|+|.|.|......
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcC-CCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence            4889999999988 5665 8999999 877655411  111111223344556899999999999999999999876543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.99  E-value=3e-09  Score=75.86  Aligned_cols=92  Identities=16%  Similarity=0.243  Sum_probs=64.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC------CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP------KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p------~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      +...+..+.+.+|+.+.|.|.+.+.|      .+.+.|++.. +.   .+.         ...|+.+....     ...+
T Consensus         8 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~   82 (264)
T 2gjj_A            8 LTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSG-----TDFT   82 (264)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEE
T ss_pred             eEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCC-----CEEE
Confidence            44567778899999999999999887      6789999852 21   111         13456554321     1247


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEecc
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNIGY   98 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~   98 (158)
                      |.|.+++.+|+|.|.|.+.|..+.. ...+.|.|...
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcC
Confidence            9999999999999999999875532 22345666544

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.99  E-value=4.4e-09  Score=74.74  Aligned_cols=89  Identities=11%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee------------ecC----CeEEEEEeecccceEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI------------HEG----SRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~------------~~~----~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      .++..+.+.+|+++.|.|.+. .+.+.+.|++.. +..+            ...    .|+.+....    ...++|.|.
T Consensus        31 ~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I~  105 (268)
T 3pl6_D           31 QTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPE----GSVSTLKIQ  105 (268)
T ss_dssp             CCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT----SSSEEEEEC
T ss_pred             eCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecC----CCEEEEEEC
Confidence            456667899999999999986 578899999821 2111            010    455544321    112479999


Q ss_pred             CCCCCCCeEEEEEEEcC--CCceEEEEEEEEec
Q psy16261         67 SLSKSDFGTYKCNAKNT--LGGSEGVIKVYNIG   97 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~   97 (158)
                      +++.+|+|.|.|.+.|.  .........|.|..
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            99999999999999984  22333345666654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.99  E-value=6.3e-10  Score=75.67  Aligned_cols=85  Identities=18%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             eEEEecCCCEEEEeEEe----ecCCCeeEEEcCCCeeeec------------CCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          8 LIGARLAAPLTLDCHVE----SYPKPITFWTHENGSLIHE------------GSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~----g~p~p~i~W~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      .+.+.+|+.+.|.|.+.    +.|.+.+.|.++ +..+..            ..|..+...  +    ..+|.|.+++.+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~-~~~i~~~~~~~~~~~~~~~~r~~~~~~--~----~~~L~I~~v~~~   75 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDIT--N----NLSIVILALRPS   75 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEEST--T----TTEEEECSCCGG
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeC-CcEEEEEeCCceeecCcccceeEEccC--C----CcEEEEecccch
Confidence            45688999999999995    457789999999 665421            112222111  1    127999999999


Q ss_pred             CCeEEEEEEEcCCCce-----EEEEEEEEeccC
Q psy16261         72 DFGTYKCNAKNTLGGS-----EGVIKVYNIGYF   99 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~   99 (158)
                      |+|.|+|.+.|..|..     ...+.|.|...+
T Consensus        76 D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  108 (201)
T 1dr9_A           76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKADF  108 (201)
T ss_dssp             GCEEEEEEEEECCTTSCEEEEEEEEEEEEECCC
T ss_pred             hCeEEEEEEEcCCCCccccccccEEEEEEcCCC
Confidence            9999999999987654     345667666643

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.99  E-value=5.3e-09  Score=68.49  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee-c--------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH-E--------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++.++..+.+.+|+++.|.|.+.+.+.+.+.|++.. +   ..+. .        ..|+...... .    ..+|.|.++
T Consensus        19 v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-~----~~sL~I~~v   93 (146)
T 2yc1_B           19 LTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSG-T----DFTLTISSL   93 (146)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEEESSC
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCC-C----EEEEEECCC
Confidence            344566778999999999999988877899999862 1   1221 1        2455554321 1    237999999


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEEEecc
Q psy16261         69 SKSDFGTYKCNAKNTLGGS-EGVIKVYNIGY   98 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~   98 (158)
                      +.+|+|.|.|.+.+..... ...+.|.|...
T Consensus        94 ~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~  124 (146)
T 2yc1_B           94 EPEDFAIYYCQQYRYSPRTFGQGTKVEIKRA  124 (146)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CHHHCEEEEEEEecCCCCeECCCEEEEEeCC
Confidence            9999999999998763322 12356666543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.99  E-value=6.1e-10  Score=75.37  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC---c
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG---G   86 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g---~   86 (158)
                      .+.+|+.+.|.|.+.+ +.+.+.|+|+ +..+...  ..  ...     ....|.|.+++.+|+|.|+|.|.|...   .
T Consensus       109 ~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~--~~--~~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~  177 (188)
T 1oll_A          109 EVISGEKVTFYCRLDT-ATSMFLLLKE-GRSSHVQ--RG--YGK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSF  177 (188)
T ss_dssp             EEETTCEEEEEEECSS-SCSEEEEEEE-SSSCEEE--EE--ECS-----SEEEEEEEECCGGGCEEEEEECEEETTEECC
T ss_pred             ccccCCEEEEEEEcCC-CCCEEEEEEC-Ccccccc--cc--CCC-----ceeEEEECCCCcCCCcEEEEEEEcCCCcCCC
Confidence            4689999999999876 4578999999 6544321  11  111     124799999999999999999998642   1


Q ss_pred             eEEEEEEEEe
Q psy16261         87 SEGVIKVYNI   96 (158)
Q Consensus        87 ~~~~~~l~v~   96 (158)
                      .+..+.|.|.
T Consensus       178 ~S~~~~l~V~  187 (188)
T 1oll_A          178 PSEPVKLLVT  187 (188)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCcEEEEec
Confidence            2334555553

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.99  E-value=2.8e-09  Score=75.49  Aligned_cols=78  Identities=26%  Similarity=0.316  Sum_probs=55.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-C---eeee-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-G---SLIH-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~---~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .+..+.+.+|+.+.|.|.+.+.|  .+.+.|++++ +   ..+.             ...|+.+.....   ....+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   82 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVFLKM   82 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETT---TTEEEEEE
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECC---CCEEEEEE
Confidence            34445689999999999999985  6899999851 1   1111             124555543210   01247999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+++.+|+|.|.|.+.|..|
T Consensus        83 ~~v~~~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           83 NSLQTDDTGTYYCTRDLYGG  102 (257)
T ss_dssp             ESCCTTCCEEEEEEEESSSS
T ss_pred             CCCCcccCEEEEEEEccccc
Confidence            99999999999999999864

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.98  E-value=5.1e-09  Score=64.88  Aligned_cols=76  Identities=14%  Similarity=0.369  Sum_probs=53.4

Q ss_pred             CceEEEecCCCEEEEeEEeecC-CCeeEEEcCCC-e----eee-------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP-KPITFWTHENG-S----LIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~-~----~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      |..+.+.+|+++.|.|...+.. .+.+.|++... .    .+.       ..+|+.+......   ...+|.|.+++.+|
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~---~~~~L~I~~~~~~D   79 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPAN---LSFTVTLENLTEED   79 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGG---TEEEEEESSCCGGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcC---CEEEEEEccCCHHH
Confidence            4567789999999999997754 36899998621 1    111       1245555432111   12479999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16261         73 FGTYKCNAKNTL   84 (158)
Q Consensus        73 ~G~Y~C~a~n~~   84 (158)
                      +|.|.|.+.+..
T Consensus        80 sG~Y~C~~~~~~   91 (110)
T 2q87_A           80 AGTYWCGVDTPW   91 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEecCc
Confidence            999999999885

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.98  E-value=8.6e-09  Score=71.57  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.+ +..+.                 ...|+.+.....   ....+|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   82 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL---EDFVYLQ   82 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT---TTEEEEE
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCC---CCEEEEE
Confidence            34556799999999999999876  6789998752 12110                 124555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.+++.+|+|.|.|.+.|..|
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           83 MHKMRVEDTAIYYCARKGSDR  103 (225)
T ss_dssp             ECSCCGGGCEEEEEEEECCSS
T ss_pred             ECCCChhhCEEEEEEEecCCC
Confidence            999999999999999999865

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.98  E-value=3.6e-09  Score=65.49  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             eEEEecCCCEEEEeEEeecCCC-----eeEEEcCCCeee---ec------------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP-----ITFWTHENGSLI---HE------------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p-----~i~W~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+.+.+|+++.|.|.+.+.|.+     .+.|++.+...+   ..            ..|+....   +.    .+|.|.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~----~sL~I~~   75 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS---DS----WTLRLHN   75 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET---TT----TEEEECS
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC---CC----EEEEEcC
Confidence            3568899999999999876544     489999732111   01            12332221   11    2799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      ++.+|+|.|.|.+.+..+.....+.
T Consensus        76 v~~~D~G~Y~C~v~~~~~~~~~~~~  100 (110)
T 1ncn_A           76 LQIKDKGLYQCIIHHKKPTGMIRIH  100 (110)
T ss_dssp             CCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             CChHHCEEEEEEEEcCCCCceEEEE
Confidence            9999999999999998776655443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.97  E-value=2.8e-09  Score=73.33  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      |..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+   .         ...|+......     ..++|.|.+++.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~   81 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSG-----TSATLGITGLQT   81 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEECSCCG
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccC-----CEEEEEECCCCc
Confidence            6678899999999999954433  5799999852 1111   1         12355544322     124799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy16261         71 SDFGTYKCNAKNTLG   85 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g   85 (158)
                      +|+|.|.|.+.|..+
T Consensus        82 ~D~G~Y~C~~~~~~~   96 (216)
T 2xzc_L           82 GDEADYYCGTWDSSL   96 (216)
T ss_dssp             GGCEEEEEEEECTTS
T ss_pred             ccCEEEEEEEEeCCC
Confidence            999999999999876

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.97  E-value=4.6e-10  Score=75.72  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=48.2

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +.+|+.+.|.|.+.+.| +.+.|+|+ +..+....+... .        .+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       105 v~~G~~v~l~C~~~~~~-~~~~w~k~-g~~~~~~~~~~~-~--------~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          105 VSSGGDVTLQCQTRYGF-DQFALYKE-GDPAPYKNPERW-Y--------RASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SCCTTCEEEEEECSSCC-CEEEEEEC-CCCTTSCCCCEE-E--------EESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ecCCCcEEEEEEcCCCC-cEEEEEEC-CCcCcceecCCC-c--------eEEEEEccCCccCCeEEEEEEEeCCC
Confidence            45799999999987654 69999999 665543222111 1        12589999999999999999999754

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.96  E-value=4.6e-09  Score=73.64  Aligned_cols=76  Identities=18%  Similarity=0.304  Sum_probs=54.5

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee-----------------ecCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI-----------------HEGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+.|  .+.+.|++++ +..+                 ....|+.+.....   ....+|.|
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I   85 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNS---KNTLYLQM   85 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETT---TTEEEEEE
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCC---CCEEEEEE
Confidence            4557789999999999999987  6789999841 1111                 0124565544210   01247999


Q ss_pred             cCCCCCCCeEEEEEEEcCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+++.+|+|.|.|.+.|..
T Consensus        86 ~~v~~~D~G~Y~C~~~n~~  104 (247)
T 2ghw_B           86 NSLRAEDTAVYYCARDRSY  104 (247)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CcCCHHHCEEEEEeeeccC
Confidence            9999999999999999973

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.96  E-value=4.5e-09  Score=74.15  Aligned_cols=89  Identities=18%  Similarity=0.260  Sum_probs=60.3

Q ss_pred             cCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.+ +.   .+.         ...|+......     ...+|.|.+++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~   82 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-----TSASLAITGLQ   82 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEECSCC
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-----CEEEEEECCCC
Confidence            4456789999999999999987  78899999841 11   111         12455554332     12479999999


Q ss_pred             CCCCeEEEEEEEcCCCce---EEEEEEEEecc
Q psy16261         70 KSDFGTYKCNAKNTLGGS---EGVIKVYNIGY   98 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~   98 (158)
                      .+|+|.|.|.+.|..+..   ...+.|.|...
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  114 (256)
T 3ux9_B           83 SEDEADYYCQVRDNNENEWVFGGGTKLTVLGS  114 (256)
T ss_dssp             GGGCEEEEEEEEETTTTEEEECCCEEEEEC--
T ss_pred             hhhCEEEEEEEEECCCCceEECCCEEEEEECC
Confidence            999999999999975432   22345555443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.96  E-value=1e-09  Score=75.90  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             ecCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         12 RLAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .+|+.+.|.|.+.|. |.| .+.|+++ +..+... ...... ..+.+...+.|.|..+...| |.|+|.|.|..|....
T Consensus       140 ~~g~~v~L~C~~~g~~P~p~~v~W~~~-g~~~~~~-~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~  215 (222)
T 1q9r_B          140 QTNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVH-TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  215 (222)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEE-EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             cCCCcEEEEEEEccEECCCCEEEEecC-CeEcceE-eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence            468999999999996 888 9999999 6544221 111111 11245556689999999999 9999999999887654


Q ss_pred             EEE
Q psy16261         90 VIK   92 (158)
Q Consensus        90 ~~~   92 (158)
                      ...
T Consensus       216 ~~~  218 (222)
T 1q9r_B          216 DKK  218 (222)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.96  E-value=6e-09  Score=75.51  Aligned_cols=89  Identities=12%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             ecCceEEEecCCCEEEEeEEeec-------CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESY-------PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      +.|+...+..|+.+.|.|.+.+.       |.|.+.|+++ +..+... ++.+....      .+.|.|.++.+.+ |.|
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~-g~~i~~~-~~~~~~~~------~~~L~i~~~~~~~-g~Y   79 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKE-QYTIINRT------ASSVTFTDIASLN-IQL   79 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEET-TEECCGG-GCEEEETT------EEEEEECSCCCSE-EEE
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEEC-CEECChh-heeeeCCc------EEEEEEcCcCCCc-eEE
Confidence            45666779999999999999864       7889999999 8776543 44333211      3479999999885 999


Q ss_pred             EEEEEcCCCce---EEEEEEEEeccCCCC
Q psy16261         77 KCNAKNTLGGS---EGVIKVYNIGYFGSD  102 (158)
Q Consensus        77 ~C~a~n~~g~~---~~~~~l~v~~~~~~~  102 (158)
                      +|.|.+. |..   ...+.|.+..+|..|
T Consensus        80 ~C~a~~~-g~~~~~~~~~~l~v~~~P~~P  107 (303)
T 1i1r_A           80 TCNILTF-GQLEQNVYGITIISGLPPEKP  107 (303)
T ss_dssp             EEEEEET-TTEEEEEEEEEEEEECCCCCC
T ss_pred             EEecccC-CCcceEEEEEEEeccCCCCCC
Confidence            9999884 433   233455555554443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.96  E-value=8.8e-09  Score=72.88  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---e------------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---H------------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ..+..+.+.+|+.+.|.|.+.+. .+.+.|++.. +..+   .            ...++........    ..+|.|.+
T Consensus       142 ~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I~~  216 (256)
T 3tf7_C          142 QSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQE----DFFLTLES  216 (256)
T ss_dssp             ESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSS----BCEEEESS
T ss_pred             ecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCC----eEEEEECC
Confidence            34556667899999999999887 7899999841 1111   1            0123333221111    23799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEE--EEEEEEecc
Q psy16261         68 LSKSDFGTYKCNAKNTLGGSEG--VIKVYNIGY   98 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~   98 (158)
                      ++.+|+|.|.|.|.|..|....  .+.|.|...
T Consensus       217 v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~  249 (256)
T 3tf7_C          217 ASPSQTSLYFCASSDAPGQLYFGEGSKLTVLEL  249 (256)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEECCCEEEEEECG
T ss_pred             CCHHHCEEEEEEecCCCCccEECCCeEEEEEcc
Confidence            9999999999999998775533  355666543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.96  E-value=3.9e-10  Score=77.33  Aligned_cols=74  Identities=16%  Similarity=0.314  Sum_probs=53.5

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecC-C-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEG-S-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .|+.+.|.|.+.|. |.+ .+.|+++ +..+... . ........++.+...+.|.|..+..+|.|.|+|.|.|.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKID-GTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET-TEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeC-CccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            58899999999984 444 8999999 7766544 1 111111222345556789999999999999999999986644

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.95  E-value=8.8e-09  Score=64.19  Aligned_cols=77  Identities=16%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++..|..+.+.+|+.+.|.|.+.+.+     .+.+.|++.. +.   .+. .        ..|+......     ...+|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-----~~~~L   78 (113)
T 1dlf_L            4 MTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG-----TDFTL   78 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEE
T ss_pred             EEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccC-----CEEEE
Confidence            34456778899999999999998766     4789998752 11   121 1        2455544321     12379


Q ss_pred             EEcCCCCCCCeEEEEEEEcC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|.+++.+|+|.|.|.+.+.
T Consensus        79 ~I~~v~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           79 KISRVEAEDLGVYFCSQSTH   98 (113)
T ss_dssp             EECSCCGGGCEEEEEEECSS
T ss_pred             EECCCChHHCEEEEEEEecC
Confidence            99999999999999999875

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.95  E-value=6e-09  Score=75.26  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC------eeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP------ITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p------~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      +..+.+.+|+.+.|.|.+.+.+.+      .+.|+++. +.   .+. .        ..|+......     ...+|.|.
T Consensus       166 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~  240 (291)
T 2gki_A          166 PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-----TDFTLTIS  240 (291)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred             CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecC-----CEEEEEEC
Confidence            445678899999999999998876      89999862 11   111 1        3455443221     12479999


Q ss_pred             CCCCCCCeEEEEEEEcCCCceEE-EEEEEEeccC
Q psy16261         67 SLSKSDFGTYKCNAKNTLGGSEG-VIKVYNIGYF   99 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~   99 (158)
                      +++.+|+|.|.|.+.|....... ...|.|...+
T Consensus       241 ~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          241 SVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHH  274 (291)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-
T ss_pred             CCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeE
Confidence            99999999999999996433322 3566666654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.94  E-value=6.2e-09  Score=73.80  Aligned_cols=79  Identities=20%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee----e-------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI----H-------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~----~-------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.|  .+.+.|++++ +..+    .             ...|+.+......   ...+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~L   81 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPS---STAYM   81 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTT---TEEEE
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCC---CEEEE
Confidence            345567799999999999999876  6799999841 2111    0             1245555432100   12479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .|.+++.+|+|.|.|.+.|..|
T Consensus        82 ~I~~v~~~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           82 QLSSLTSEDSAVYYCARYDYYG  103 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCTTS
T ss_pred             EECcCChhhCEEEEEEEeeccC
Confidence            9999999999999999999866

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.94  E-value=8.6e-10  Score=86.48  Aligned_cols=86  Identities=23%  Similarity=0.342  Sum_probs=65.8

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      .+.+.+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+.            ...+..+...+        +|.|.+++.+|
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------~L~i~~v~~~D  443 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLN-TGRTEAWKVLSPQGGGPWDSVARVLPNG--------SLFLPAVGIQD  443 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEE-ETTSSSCEECCSCCSSGGGGTSEECTTS--------CEEESSCCGGG
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEc-CCeeEEEEecccCCCCCcCCcEEEcCCc--------eEEEecccccc
Confidence            345678899999999999 8889999999998 43211            01233333222        69999999999


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEeccCC
Q psy16261         73 FGTYKCNAKNTLGGS-EGVIKVYNIGYFG  100 (158)
Q Consensus        73 ~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~  100 (158)
                      +|.|+|.+.|..|.. ...+.|.|...+.
T Consensus       444 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~  472 (581)
T 3o3u_N          444 EGIFRCQAMNRNGKETKSNYRVRVYQIPG  472 (581)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEEEBCCC
T ss_pred             CeEEEEEEEcCCCceeEEEEEEEEEcCCC
Confidence            999999999999887 6778888876543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.94  E-value=7.2e-09  Score=74.26  Aligned_cols=77  Identities=13%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee--------------cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH--------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~--------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ..++..+.+.+|+.+.|.|.+.+.+.+.+.|++.+ +..   +.              ...|+.+....    ...++|.
T Consensus        28 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~  103 (279)
T 2wbj_D           28 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLSTLT  103 (279)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECS----SSEEEEE
T ss_pred             EeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCC----CCEEEEE
Confidence            44567788999999999999988888899999862 111   10              12455554321    1234799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.|.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDL  122 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             EccCCccCCEEEEEEEccc
Confidence            9999999999999999994

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.94  E-value=7.9e-09  Score=74.21  Aligned_cols=79  Identities=18%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+.                 ...|+.+.....   ....+|
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL  107 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTS---SNTAYL  107 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETT---TTEEEE
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecC---CCeEEE
Confidence            345567789999999999998875  5799999862 11110                 124555443210   012479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .|.+++.+|+|.|.|.+.|..|
T Consensus       108 ~I~~v~~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          108 QLSSLTSEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             EECSCCGGGCEEEEEEEECSSS
T ss_pred             EECcCChhhCEEEEEEeccCCC
Confidence            9999999999999999999876

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.94  E-value=3.3e-09  Score=75.10  Aligned_cols=92  Identities=9%  Similarity=0.052  Sum_probs=52.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--Ce--eeec-C-------------CeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--GS--LIHE-G-------------SRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~~--~~~~-~-------------~~~~~~~~~~~~~~~~~~l~   64 (158)
                      +..+..+.+.+|+++.|.|.+.+.+.+.+.|++..  ..  .+.. .             .++......   .....+|.
T Consensus         6 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~   82 (259)
T 3omz_A            6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGS---TRKNLRMI   82 (259)
T ss_dssp             -----CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC-----CCCEEE
T ss_pred             ccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecC---CCCeEEEE
Confidence            44567788999999999999999999999999831  11  1100 0             011111111   00123699


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCc---eEEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGG---SEGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.|..+.   ....+.|.|..
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTD  118 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEec
Confidence            9999999999999999998662   23345555555

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.94  E-value=1e-09  Score=69.58  Aligned_cols=92  Identities=18%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             cCceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec-------------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE-------------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +...+.+.+|+++.|.|.. .......+.|+++....+..             ..|+.+..       ..++|.|.+++.
T Consensus        10 ~~~pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~-------~~~sL~I~nv~~   82 (121)
T 2edo_A           10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDP-------QSGALYISKVQK   82 (121)
T ss_dssp             CCBCCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECT-------TTCCEEESSCCG
T ss_pred             CcEEEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeC-------CCceEEEeCCCH
Confidence            4455778999999999987 34445689999873312211             11222220       123799999999


Q ss_pred             CCCeEEEEEEEcCCCc-eEEEEEEEEeccCCCCC
Q psy16261         71 SDFGTYKCNAKNTLGG-SEGVIKVYNIGYFGSDT  103 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~  103 (158)
                      +|+|.|.|.+.+..+. ....+.|.|....+.|.
T Consensus        83 ~DsG~Y~c~v~~~~~~~~~~~~~L~V~~~~~~P~  116 (121)
T 2edo_A           83 EDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV  116 (121)
T ss_dssp             GGCSEEEEEEEETTTEEEECCEECEEECCSCCCC
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEEEECCCCCCE
Confidence            9999999999876543 45567888877655543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.94  E-value=4.5e-09  Score=79.36  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=59.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC----eeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP----ITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p----~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |...+..+.+.+|+.+.|.|.+.+.|.+    .+.|++++ +..+   .         ...|+.....+     ..+.|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~   78 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSR-----TDFTLT   78 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEET-----TEEEEE
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccC-----CcEEEE
Confidence            4455777889999999999999988864    89999862 2211   0         12455554322     124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCc
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |.+++.+|+|.|+|.+.|..+.
T Consensus        79 I~~v~~~D~G~Y~C~a~n~~~~  100 (438)
T 1qgc_4           79 IDPVEADDVATYYCQQSNEVPL  100 (438)
T ss_dssp             ESSCCGGGCEEEEEEECSSTTC
T ss_pred             eCCCcCcCCeeEEEEEecCCCc
Confidence            9999999999999999998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.93  E-value=1.2e-08  Score=71.59  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=62.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce---eee--------------cCCeEEEEEeecccceEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS---LIH--------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      ...+..+.+.+|+++.|.|.+.+.  +.+.+.|++.. +.   .+.              ...|+.+.....   ....+
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~   81 (242)
T 1hxm_B            5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPE---TSTST   81 (242)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETT---TTEEE
T ss_pred             CcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCC---CcEEE
Confidence            445677889999999999999886  66799999852 11   111              234555543210   01347


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCC-c------eEEEEEEEEecc
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLG-G------SEGVIKVYNIGY   98 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g-~------~~~~~~l~v~~~   98 (158)
                      |.|.+++.+|+|.|.|.+.+... .      ....+.|.|...
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~  124 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDK  124 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESS
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEccc
Confidence            99999999999999999998631 1      112356777653

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.93  E-value=9.4e-10  Score=75.42  Aligned_cols=75  Identities=16%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .|+.+.|.|.+.|.+++  .+.|+++ +..+..+.+. ......++.+...+.|.|..+..+|.|.|+|.|.|......
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVD-GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEEC-CEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            58899999999986544  8999999 8777554221 11222223455566899999999999999999999865433

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.93  E-value=8.4e-10  Score=76.46  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             EecCCCEEEEeEEeec---CC-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY---PK-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~---p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.|.   |. +.+.|+++ +..+.............+.+...+.|.|.+++.+|.|.|+|.+.|..+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEET-TEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEEC-CccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            5789999999999987   33 78999999 6555332111111111122334567999999999999999999998765


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus       102 ~  102 (218)
T 2rgs_A          102 S  102 (218)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.93  E-value=1.1e-09  Score=79.90  Aligned_cols=92  Identities=11%  Similarity=0.034  Sum_probs=64.3

Q ss_pred             cCceEEEecCCCEEEEeEEeec-----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY-----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      .++...+..|+++.|.|.+.+.     |.+.+.|+++ +..+.. .++.....+    ...+.|.|.++...|+|.|.|.
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~-g~~l~~-~~~~~~~~~----~~~~~L~i~~~~~~d~g~y~c~   79 (313)
T 2d9q_B            6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLG-AELQPG-GRQQRLSDG----TQESIITLPHLNHTQAFLSCSL   79 (313)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESS-SCBCTT-CEECCCSSS----CCCEEEEESCCCSSEEEEEEEE
T ss_pred             ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeC-CEECCc-cceEEEecC----eEEEEEEEeccCCCccceEEee
Confidence            3445568899999999999997     5789999999 776643 322211111    0114799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEeccCCCC
Q psy16261         80 AKNTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      +.+..+...+.+.|.+...|..+
T Consensus        80 ~~~~~~~~~~~~~l~v~~~P~~P  102 (313)
T 2d9q_B           80 NWGNSLQILDQVELRAGYPPAIP  102 (313)
T ss_dssp             ESSSSEEEEEEEEEEECCCCCCC
T ss_pred             ecCCCceeEEEEEEccCCCCCCC
Confidence            87755544556677666655443

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.93  E-value=1.9e-09  Score=68.39  Aligned_cols=92  Identities=12%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCe----eee---c----------CCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGS----LIH---E----------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~----~~~---~----------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+++.|.|.+.+.+..   .+.|+|.+..    .+.   .          ..|+.+....  ......+|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL~   83 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPP--RNPLDGSVL   83 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSS--CCTTBCCEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCC--CcCCEEEEE
Confidence            3556778999999999999876543   5789985211    110   0          1122221111  001123699


Q ss_pred             EcCCCCCCCeEEEEEEEc-CCCceEEEEEEEEecc
Q psy16261         65 IGSLSKSDFGTYKCNAKN-TLGGSEGVIKVYNIGY   98 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~   98 (158)
                      |.+++.+|+|.|.|.+.+ ..|.....+.|.|.+.
T Consensus        84 I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~  118 (123)
T 4gjt_B           84 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLEH  118 (123)
T ss_dssp             EESCCSSSCSEEEEEEEESSSCEEEEEEEEEC---
T ss_pred             ECCCChHHCEEEEEEEEECCCCeEEeEEEEEEEEC
Confidence            999999999999998876 5677778888888765

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.93  E-value=3.4e-09  Score=77.70  Aligned_cols=86  Identities=17%  Similarity=0.259  Sum_probs=62.5

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      .++..+.+..|+++.|.|.+.+.+ .+.+.|+++ +..+... .++. ...+        .|.|.++...|+|.|+|.+ 
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~-~~~~--------~L~i~~v~~~d~G~Y~C~~-   79 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR-KPAAGSHPSRWA-GMGR--------RLLLRSVQLHDSGNYSCYR-   79 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEE-CSSSSCCCEEEE-EESS--------EEEECSCCGGGCEEEEEES-
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCCCceEEEEEC-CccCCccccccc-cccc--------eEEecccchhhCeEeEEEe-
Confidence            455555567999999999998765 789999998 4433222 2222 1222        6999999999999999993 


Q ss_pred             cCCCceEEEEEEEEeccCCCC
Q psy16261         82 NTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~~~~  102 (158)
                        .|.....+.|.|...|..+
T Consensus        80 --~g~~~~~~~L~V~~pP~~P   98 (325)
T 1n26_A           80 --AGRPAGTVHLLVDVPPEEP   98 (325)
T ss_dssp             --SSSCSCEEEEEECCCCCCC
T ss_pred             --CCEEeeeEEEEeccCCCCC
Confidence              6777778888888766544

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.92  E-value=8.1e-09  Score=71.32  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee---e-e---------------cCCeEEEEEeecccceEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL---I-H---------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~---~-~---------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.+ +..   + .               ...|+.+.....   ....+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~   82 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS---QSILY   82 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT---TTEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC---CCeEE
Confidence            34456789999999999999866  6789999852 111   1 0               024555543210   01247


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCC-----ceEEEEEEEEec
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLG-----GSEGVIKVYNIG   97 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~   97 (158)
                      |.|.+++.+|+|.|.|.+.|..+     .....+.|.|..
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           83 LQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             EEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             EEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            99999999999999999999764     222334565554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.92  E-value=3e-09  Score=76.09  Aligned_cols=84  Identities=14%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |......+.+.+|+.+.|.|.+.+.    +.|+++ +..+.  .+....  .  .....+.|.|.+++.+|+|.|+|.|.
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~-~~~~~--~~~~~~--~--~~~~~~~L~i~~~~~~D~G~Y~C~a~   71 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERM-SQEPP--QEMAKA--Q--DGTFSSVLTLTNLTGLDTGEYFCTHN   71 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESSC----CEEEBT-TBCCS--EEEEEC--T--TSCEEEEEEECSCCGGGCEEEEEECC
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccce----EEEECC-CCCcc--cceecc--C--CCceeEEEEEccCChhhCEEEEEEEc
Confidence            3444556778899999999999875    999999 65542  122111  1  11123579999999999999999999


Q ss_pred             cCCCc---eEEEEEEEEe
Q psy16261         82 NTLGG---SEGVIKVYNI   96 (158)
Q Consensus        82 n~~g~---~~~~~~l~v~   96 (158)
                      |..|.   ....+.|.+.
T Consensus        72 n~~g~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           72 DSRGLETDERKRLYIFVP   89 (289)
T ss_dssp             C------CCCEEEEEECC
T ss_pred             ccCCCCcCcEEeEEEEEE
Confidence            98876   3445555544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.92  E-value=3.5e-09  Score=75.43  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=60.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++.+ +.   .+.         ...|+.+....     ...+|.
T Consensus        19 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~   93 (268)
T 1x9q_A           19 TQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSG-----TDFTLK   93 (268)
T ss_dssp             EEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEE
T ss_pred             EeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCC-----CEEEEE
Confidence            4456667788999999999999887     4799999852 11   111         13456554322     123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC---
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEcc
Confidence            99999999999999999975532 2234555544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.92  E-value=1.1e-08  Score=73.23  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             ceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee---ee--------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL---IH--------------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~---~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..   +.              ...|+.+.....   .....|.|.
T Consensus       142 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~  218 (276)
T 3auv_A          142 GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTS---KNTAYLQMN  218 (276)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred             CceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCC---CcEEEEEEC
Confidence            445678899999999999877  5899999862 111   10              124555543310   012379999


Q ss_pred             CCCCCCCeEEEEEEEcCC---Cce--EEEEEEEEeccC
Q psy16261         67 SLSKSDFGTYKCNAKNTL---GGS--EGVIKVYNIGYF   99 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~---g~~--~~~~~l~v~~~~   99 (158)
                      +++.+|+|.|.|.+.|..   +..  ...+.|.|...+
T Consensus       219 ~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~  256 (276)
T 3auv_A          219 SLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS  256 (276)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred             CCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence            999999999999999973   221  224666666544

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.92  E-value=6.6e-09  Score=72.88  Aligned_cols=83  Identities=10%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             ecCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecC------C-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261         12 RLAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEG------S-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        12 ~~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..|+.+.|.|.+.| .|.| .+.|+++ +..+...      . ........+..+...+.|.+......|.|.|+|.|.|
T Consensus       131 ~~~~~~~L~C~~~g~~P~pi~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n  209 (248)
T 3pv7_A          131 MKENEDKYMCESSGFYPEAINITWEKQ-TQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH  209 (248)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEEE-CSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred             ccCCCcEEEEEEccEECCCeEEEEEEC-CccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence            45778889999999 7988 9999999 6433211      1 0122233334455567899999999999999999999


Q ss_pred             CCCce--EEEEEEEE
Q psy16261         83 TLGGS--EGVIKVYN   95 (158)
Q Consensus        83 ~~g~~--~~~~~l~v   95 (158)
                      ..+..  ...+.|.|
T Consensus       210 ~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          210 ASLHTPLRSNFTLTA  224 (248)
T ss_dssp             TTCSSCEEEEECC--
T ss_pred             CCCCCCcEEEEEEEE
Confidence            98864  44566666

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.91  E-value=2.3e-09  Score=73.74  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             cCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCe--EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSR--YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .|+.+.|.|.+.| .|.| .+.|+++ +..+.....  .......++.|...+.|.|..+..+|.|.|+|.|.|......
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVD-NALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEEC-CeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            4889999999998 4554 8999999 776654311  111112223455567899999999999999999999875543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.91  E-value=1.6e-08  Score=69.66  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee---e-e---------------cCCeEEEEEeecccceEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL---I-H---------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~---~-~---------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      .+..+.+.+|+++.|.|.+.+.+  .+.+.|++++ +..   + .               ...|+.+.....   ....+
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~   82 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDS---KSSVY   82 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGG---GTEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCC---CCeEE
Confidence            35567789999999999999876  6899999862 111   1 1               024555543210   01237


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCce-E--EEEEEEEec
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGS-E--GVIKVYNIG   97 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~-~--~~~~l~v~~   97 (158)
                      |.|.+++.+|+|.|.|.+.|..+.. .  ..+.|.|..
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            9999999999999999999975432 1  235666653

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.90  E-value=8.5e-10  Score=76.71  Aligned_cols=77  Identities=13%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC-eee---e---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-SLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ..+..+.+.+|+++.|.|.+.+.|.+.+.|++++. ..+   .         ...|+......     ...+|.|.+++.
T Consensus        28 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~  102 (233)
T 3bqu_C           28 QSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYG-----TDFVFTIENMLS  102 (233)
T ss_dssp             EECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEE-----EEEEEC-----C
T ss_pred             EcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccC-----CEEEEEECCCCH
Confidence            34566678899999999999999888999988521 111   0         01233222111     234799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy16261         71 SDFGTYKCNAKNTLG   85 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g   85 (158)
                      +|+|.|.|.+.|..+
T Consensus       103 ~D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          103 EDVADYYCLQSDNLP  117 (233)
T ss_dssp             CCCSEEEEEECSSSS
T ss_pred             HHCEEEEEEEecCCc
Confidence            999999999998765

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.90  E-value=7e-10  Score=76.25  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             cCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261         13 LAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV   90 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~   90 (158)
                      .|+.+.|.|.+.+ .|.| .+.|+++ +..+..+.........++.+...+.|.|......|.|.|+|.|.|..+.....
T Consensus       135 ~~~~v~L~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          135 KENKATLVCLISNFSPSGVTVAWKAN-GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEET-TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEECcccCCCeEEEEEEC-CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            4678999999998 5666 8999999 77765432111111112344445568898888889999999999998765544


Q ss_pred             E
Q psy16261         91 I   91 (158)
Q Consensus        91 ~   91 (158)
                      +
T Consensus       214 ~  214 (218)
T 3s96_B          214 L  214 (218)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.90  E-value=6.4e-10  Score=78.39  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             cCCCEEEEeEEeecCC--CeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESYPK--PITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .|+.+.|.|.+.|.++  +.++|+++ +..+...  .+.......++.+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEES-SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEEC-CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            4779999999998543  35999999 7766544  1111111222234455689999999999999999999987654

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.90  E-value=9e-09  Score=65.36  Aligned_cols=91  Identities=18%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC----eeEEEcCCC---------------eeeec----CCeEEEEEeeccc-----
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP----ITFWTHENG---------------SLIHE----GSRYHMWTEKFSS-----   56 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p----~i~W~~~~~---------------~~~~~----~~~~~~~~~~~~~-----   56 (158)
                      .+..+.+.+|+++.|.|.+.+.+.+    .+.|++...               ..+..    ..|+.+.......     
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~   87 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE   87 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence            3556778899999999999887665    789998621               11111    1233322111000     


Q ss_pred             -ceEEEEEEEcCCCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy16261         57 -YKFYMRLYIGSLSKSDFGTYKCNAKN-TLGGSEGVIKVYN   95 (158)
Q Consensus        57 -~~~~~~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v   95 (158)
                       -....+|.|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus        88 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           88 AELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             CBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence             00023799999999999999998765 5576676666643

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.90  E-value=4.2e-09  Score=74.29  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC--CCeeEEEcC-CCeeee-----------------cCCeEEEEEeecccceEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHE-NGSLIH-----------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      ...+..+.+.+|+.+.|.|.+.+.+  .+.+.|++. .+..+.                 ...|+.+......   ...+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~   81 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSS---NTAY   81 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT---TEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCC---CeEE
Confidence            3456677899999999999998854  779999983 121110                 1245555432211   1236


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNI   96 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~   96 (158)
                      |.|.+++.+|+|.|.|.+.|..+.. .....|.|.
T Consensus        82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~  116 (253)
T 3uzq_A           82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVS  116 (253)
T ss_dssp             EEECSCCGGGCEEEEEEECSSSCCEECCCEEEEEC
T ss_pred             EEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEe
Confidence            9999999999999999999965544 233455554

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.90  E-value=1.4e-08  Score=64.99  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             cCceEEEecCCCEEEEeEEee-------cCCCeeEEEcCCCe-----eeec-----------CCeEEEEEeecccceEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVES-------YPKPITFWTHENGS-----LIHE-----------GSRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g-------~p~p~i~W~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~   61 (158)
                      .+..+.+.+|+.+.|.|....       .....+.|++....     .+..           ..|+.+....   .....
T Consensus        12 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~---~~~~~   88 (132)
T 1nko_A           12 MQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP---QTKNC   88 (132)
T ss_dssp             ECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCG---GGTBC
T ss_pred             CCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCC---CCCce
Confidence            456678999999999999973       34578999987221     1211           1455443211   01123


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCCce---EEEEEEEEeccCC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTLGGS---EGVIKVYNIGYFG  100 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~~~  100 (158)
                      +|.|.+++.+|+|.|.|.+.+.....   ...+.|.|...+.
T Consensus        89 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~~~  130 (132)
T 1nko_A           89 TLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTH  130 (132)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECCC-
T ss_pred             EEEEcccCcccCeeEEEEEEcCCCcccccCCceEEEecccCC
Confidence            69999999999999999998753111   1246666766543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.89  E-value=6.2e-10  Score=76.28  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             cCCCEEEEeEEeecC--CCeeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         13 LAAPLTLDCHVESYP--KPITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .|+.+.|.|.+.|.+  .+.+.|+++ +..+..+... ......++.+...+.|.|..+..+|.|.|+|.|.|..+....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          125 QANKATLVCLISDFYPGAVTVAWKAD-SSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             cCCCeEEEEEeeeecCCCeEEEEEEC-CeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            499999999999963  478999999 7776542111 111222234555567999999999999999999999876655


Q ss_pred             EE
Q psy16261         90 VI   91 (158)
Q Consensus        90 ~~   91 (158)
                      .+
T Consensus       204 ~~  205 (211)
T 3tv3_L          204 TV  205 (211)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.89  E-value=2.9e-08  Score=64.00  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcC-C-Ceee----ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHE-N-GSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      ...+..+.+.+|+.+.|.|.+.+. ...+.|++. . +..+    ....|+...... .    ...|.|.+++.+|+|.|
T Consensus        22 ~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~-~----~~~L~I~~~~~~Dsg~Y   95 (134)
T 3kg5_A           22 WQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNE-S----LATLTIQGIRFEDNGIY   95 (134)
T ss_dssp             EEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECS-S----EEEEEECSCCTTTCEEE
T ss_pred             EEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccC-C----EEEEEECCCCcCcCEEE
Confidence            345666789999999999999875 578999876 1 2221    234677665322 1    34799999999999999


Q ss_pred             EEEEEcCCCc---eEEEEEEEEecc
Q psy16261         77 KCNAKNTLGG---SEGVIKVYNIGY   98 (158)
Q Consensus        77 ~C~a~n~~g~---~~~~~~l~v~~~   98 (158)
                      .|.+.+..+.   ....+.|.|.+.
T Consensus        96 ~C~~~~~~~~~~~fg~GT~L~V~~~  120 (134)
T 3kg5_A           96 FCQQKCNNTSEVYQGCGTELRVMGF  120 (134)
T ss_dssp             EEEEECTTTCCEEECCCEEEEEECC
T ss_pred             EEEEEcCCCCceEECCCEEEEEecC
Confidence            9999886321   122456767654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.89  E-value=2.1e-09  Score=74.89  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=54.6

Q ss_pred             EecCCCEEEEeEEeec-CCC-eeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY-PKP-ITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.|. |.| .+.|+++ +..+.  ......   .. +.|...+.|.|..+..+| |.|+|.|.|..+.
T Consensus       133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~-g~~~~~~~~~~~~---~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  206 (227)
T 1mju_H          133 DTSGSSVTLGCLVKGYFPEPVTLTWNSG-SLSSGVHTFPAVL---QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  206 (227)
T ss_dssp             -----CEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCEE---ET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT
T ss_pred             ccCCCcEEEEEEeecEeCCCeEEEEecC-CCcCCcEECCcee---cC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCC
Confidence            4579999999999986 777 9999999 65431  111111   11 234455689999998888 9999999998776


Q ss_pred             eEEEEEEEEeccCCCC
Q psy16261         87 SEGVIKVYNIGYFGSD  102 (158)
Q Consensus        87 ~~~~~~l~v~~~~~~~  102 (158)
                      ......+.+...|..+
T Consensus       207 ~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          207 TKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             EEEEEECCCCCC----
T ss_pred             cceEEEeCCCCCCCCC
Confidence            6666666555554443

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.89  E-value=1e-08  Score=63.46  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CceEEEecCCCEEEEeE-EeecC-CCeeEEEcCCCeee---e---------cCCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCH-VESYP-KPITFWTHENGSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~-~~g~p-~p~i~W~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      |..+.+.+|+++.|.|. +.+.+ .+.+.|++. ...+   .         ...|+.+.....   ....+|.|.+++.+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~-~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~v~~~   82 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQ-RSAPITVIYEDNQRPSGVPDRFAGSIDRS---SNSASLTISGLKTE   82 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC--CCCEEEEBTTTBCCTTCCTTEEEEEETT---TTEEEEEECSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEE-CCCCcEEEEecCCcCCCCCCcEEEEeccC---CCEEEEEECCCChh
Confidence            66788999999999999 77665 478999987 3211   1         124565543111   11247999999999


Q ss_pred             CCeEEEEEEEcC
Q psy16261         72 DFGTYKCNAKNT   83 (158)
Q Consensus        72 d~G~Y~C~a~n~   83 (158)
                      |+|.|.|.+.+.
T Consensus        83 DsG~Y~C~~~~~   94 (109)
T 1pew_A           83 DEADYYCQSYDA   94 (109)
T ss_dssp             GCEEEEEEEEET
T ss_pred             hCEEEEEEEEeC
Confidence            999999999875

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.89  E-value=1.6e-08  Score=71.43  Aligned_cols=76  Identities=21%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             cCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce---ee-------------ecCCeEEEEEeecccceEEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS---LI-------------HEGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~---~~-------------~~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.. +.   .+             ....|+.+......   ...+|.|
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I   90 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSK---NQVYLQL   90 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGG---TEEEEEE
T ss_pred             CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCC---ceEEEEE
Confidence            3445568899999999999994  47799999841 11   11             01235555433211   1347999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.|.
T Consensus        91 ~~v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDS  108 (257)
T ss_dssp             CSCCGGGCEEEEEEEECT
T ss_pred             CCCChhhCEEEEEEEecC
Confidence            999999999999999997

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.89  E-value=7.9e-09  Score=71.88  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             CceEEEecCCCEEEEeEEeecCC----CeeEEEcCC-Cee---e-e------------cCCeEEEEEeecccceEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK----PITFWTHEN-GSL---I-H------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~----p~i~W~~~~-~~~---~-~------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      +..+.+.+|+.+.|.|.+.+.|.    +.+.|++.+ +..   + .            ...|+.+.....   ....+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~   83 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS---RDMVFMK   83 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT---TTEEEEE
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC---CCeEEEE
Confidence            45567899999999999998775    889998752 111   1 1            123555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.+++.+|+|.|.|.+.|..|
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           84 ITSVDTADTATYYCARRGFYG  104 (228)
T ss_dssp             ECSCCGGGCEEEEEEEEEEST
T ss_pred             EcCCCcccCEEEEEEEecCCC
Confidence            999999999999999998765

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.41  E-value=1.8e-10  Score=71.68  Aligned_cols=78  Identities=21%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee------------ecCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI------------HEGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+.+.|.|.+.+.+.+.+.|++.. +..+            ....|+.+....   .....+|.|.+++
T Consensus         3 ~Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~   79 (110)
T 1u3h_A            3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK---REKKLSLHIADSQ   79 (110)
Confidence            44566778999999999999988888899999862 1111            112344443210   0112479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~DsG~Y~C~~~~~   93 (110)
T 1u3h_A           80 PGDSATYFCAASAN   93 (110)
Confidence            99999999999875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.88  E-value=1.6e-08  Score=76.39  Aligned_cols=89  Identities=16%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+.+.|.|.+.|.|  .+.+.|+++. +..+.                 ...++.+......   ....|.|
T Consensus       225 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I  301 (438)
T 1qgc_4          225 SGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAK---NTLYLQM  301 (438)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTT---TEEEEEE
T ss_pred             CCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCC---CeEEEEE
Confidence            3445688999999999999988  6799999852 22111                 1245555433110   1247999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC-----ceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG-----GSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|+|.|.|..+     .....+.|.|..
T Consensus       302 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          302 SSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             CSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred             CCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec
Confidence            99999999999999999544     222345566654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.88  E-value=9.5e-10  Score=75.83  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             ecCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         12 RLAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        12 ~~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .+|+.+.|.|.+.| .|.| .+.|+++ +..+......... .. +.+...+.|.|... ..|.|.|+|.|.|..+....
T Consensus       137 ~~g~~v~L~C~~~g~~P~p~~v~W~~~-g~~~~~~~~~~~~-~~-~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~  212 (219)
T 1c1e_H          137 QTNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVHTFPAVL-QS-DLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKV  212 (219)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCEE-SS-SCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEE
T ss_pred             ccCCeEEEEEEcccccCCCeEEEEEeC-CcccceEecCCcc-cC-CeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccE
Confidence            46999999999999 8999 9999999 6543110000000 11 23444567888444 44669999999998876554


Q ss_pred             EEEE
Q psy16261         90 VIKV   93 (158)
Q Consensus        90 ~~~l   93 (158)
                      ...|
T Consensus       213 ~~~i  216 (219)
T 1c1e_H          213 DKKI  216 (219)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            4433

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.88  E-value=7.9e-11  Score=80.87  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             cCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      +|+.+.|.|.+.|. |. +.+.|+++ +..+...... ......+. +...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       127 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          127 RTNKATLVCLVNDFYPGSATVTWKAN-GATINDGVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEET-TEEECSSCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             cCCceEEEEEEEeeECCccEEEEEEC-CeEcCCCeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            58899999999997 54 79999999 7776544221 11111112 4445679999999999999999999987653

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.88  E-value=3.4e-09  Score=66.69  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=53.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCCe---eeec-C----CeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGS---LIHE-G----SRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~---~~~~-~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      +..++..+.+.+|+++.|.|.+.+. +.+.+.|+++++.   .+.. .    .++..............+|.|.+++.+|
T Consensus        10 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   89 (120)
T 2yz1_A           10 VTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPED   89 (120)
T ss_dssp             EECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGG
T ss_pred             EECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHH
Confidence            3445677889999999999999875 5678999998322   1111 0    1111111000000011369999999999


Q ss_pred             CeEEEEEEEcCC
Q psy16261         73 FGTYKCNAKNTL   84 (158)
Q Consensus        73 ~G~Y~C~a~n~~   84 (158)
                      +|.|.|.+.+..
T Consensus        90 sG~Y~C~~~~~~  101 (120)
T 2yz1_A           90 AGTYYCVKFQKG  101 (120)
T ss_dssp             CEEEEEEEEECC
T ss_pred             CEEEEEEEEcCC
Confidence            999999998764

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.88  E-value=3.7e-08  Score=59.90  Aligned_cols=87  Identities=22%  Similarity=0.378  Sum_probs=62.0

Q ss_pred             EEEecCCCEEEEeEEee-cCCCeeEEEcCCCeee-ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          9 IGARLAAPLTLDCHVES-YPKPITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ..+..|+.+.|.|.+.+ .+.|.++|-|-++... ....+.+...+.+ +. ..-.|.|..+..+|+|.|.|.|.+..|.
T Consensus        21 hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~-N~-s~fvLhf~~V~~sDsGsYRCsAn~~sg~   98 (120)
T 2aw2_A           21 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEK-NI-SFFILHFEPVLPNDNGSYRCSANFQSNL   98 (120)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECS-SC-EEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecC-Ce-eEEEEEEeeeeEcCCcceEEEeeCCCCc
Confidence            35789999999999999 6899999988745322 1222333333321 11 1225999999999999999999999888


Q ss_pred             eE-EEEEEEEec
Q psy16261         87 SE-GVIKVYNIG   97 (158)
Q Consensus        87 ~~-~~~~l~v~~   97 (158)
                      .+ .++++.|.+
T Consensus        99 ieSHsvtI~Vt~  110 (120)
T 2aw2_A           99 IESHSTTLYVTD  110 (120)
T ss_dssp             EECCCEEEEEEC
T ss_pred             EEeeEEEEEEEe
Confidence            74 456666654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.88  E-value=1.8e-08  Score=71.73  Aligned_cols=90  Identities=14%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---ec--C----------C-eEEEEEeecccceEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---HE--G----------S-RYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---~~--~----------~-~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ..++..+.+.+|+.+.|.|.+.+ +.+.+.|++.. +...   ..  .          . |+.+....    ....+|.|
T Consensus        31 ~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~sL~I  105 (270)
T 3qib_D           31 IQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPS----NSPCSLEI  105 (270)
T ss_dssp             EEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCT----TSCEEEEE
T ss_pred             EeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCC----CcEEEEEE
Confidence            34566788999999999999865 77899999831 2111   00  0          0 44443211    11347999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC----ceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG----GSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.+...    .....+.|.|..
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence            99999999999999997432    222345666665

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.87  E-value=3e-08  Score=69.37  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +...+..+.+.+|+.+.|.|.+. .+.+.+.|++.+ +..   +.            ...|+.+....    ...++|.|
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~----~~~~~L~I   76 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPS----QEQFSLIL   76 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCS----SSEEEEEE
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecC----CCEEEEEE
Confidence            45567788899999999999985 467899999862 111   10            12344333211    11347999


Q ss_pred             cCCCCCCCeEEEEEEEcCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+++.+|+|.|.|.+.|..
T Consensus        77 ~~v~~~D~G~Y~C~~~~~~   95 (238)
T 1bec_A           77 ELATPSQTSVYFCASGGGR   95 (238)
T ss_dssp             SSCCGGGCEEEEEEEESCT
T ss_pred             ecCCcccCEEEEEEEecCC
Confidence            9999999999999999874

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.87  E-value=3.9e-09  Score=74.57  Aligned_cols=85  Identities=15%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC---Cc
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL---GG   86 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~---g~   86 (158)
                      .+.+|+.+.|.|.+.+. .+.+.|+|+ +..+..  ...  ...     ....|.|.+++.+|+|.|+|.+.|..   ..
T Consensus       112 ~v~~G~~vtL~C~~~~~-~~~~~w~k~-g~~~~~--~~~--~~~-----~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~  180 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTA-TSMFLLLKE-GRSSHV--QRG--YGK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSF  180 (242)
T ss_dssp             EEETTCEEEEEEECTTS-CSEEEEEEC-SSSCEE--EEE--ECS-----SEEEEEEEECCGGGCEEEEEEEEEETTEECC
T ss_pred             ccCCCCcEEEEEecCCC-CCEEEEEEC-CCccCc--ccc--CCC-----ceEEEEeCCCccccCEEEEEEEECCCCcccC
Confidence            47799999999999764 568999999 654432  111  111     12479999999999999999999864   12


Q ss_pred             eEEEEEEEEeccCCCCCcc
Q psy16261         87 SEGVIKVYNIGYFGSDTQY  105 (158)
Q Consensus        87 ~~~~~~l~v~~~~~~~~~~  105 (158)
                      .+..+.|.|.+.+..+...
T Consensus       181 ~S~~~~l~V~~~~~~P~l~  199 (242)
T 1p6f_A          181 PSEPVKLLVTGDIENTSLA  199 (242)
T ss_dssp             CCCCEEEEEEC--------
T ss_pred             CCCCEEEEEeccCCCCccc
Confidence            3556788888766554443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.87  E-value=2.6e-09  Score=74.17  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CceEEEecCCCEEEEeEEeecCC-C-eeEEEcCC-Ceee---e---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK-P-ITFWTHEN-GSLI---H---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~-p-~i~W~~~~-~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +..+.+.+|+.+.|.|.+.+.+. + .+.|++++ +..+   .         ...|+......     ...+|.|.+++.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~  100 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSG-----TSASLAISGLRS  100 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEET-----TEEEEEEESCCS
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecC-----CeEEEEECCCCH
Confidence            55566889999999999988653 4 69998862 1111   1         12455444321     124799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy16261         71 SDFGTYKCNAKNTLG   85 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g   85 (158)
                      +|+|.|.|.+.|..+
T Consensus       101 ~D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L          101 EDEADYYCATWDDSL  115 (234)
T ss_dssp             TTCSEEEEEEEETTT
T ss_pred             HHCEEEEEEEEcCCc
Confidence            999999999999877

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.87  E-value=3.9e-09  Score=72.26  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             EecCCCEEEEeEEeec----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.+.    |.|.+.|+++ +..... .+.  .        ..+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~-~~~~~~-~~~--~--------~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGN-ALSPLD-PET--T--------RSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESS-TTSSSC-SSC--C--------CSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCC-CCccCC-CCc--e--------eEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            4579999999999874    8899999999 543221 111  1        1236999999999999999999998654


Q ss_pred             e--EEEEEEE
Q psy16261         87 S--EGVIKVY   94 (158)
Q Consensus        87 ~--~~~~~l~   94 (158)
                      .  +..+.|.
T Consensus       203 ~~~~~~v~l~  212 (214)
T 2zg1_A          203 VTTERTVQLN  212 (214)
T ss_dssp             -CCEEEEECC
T ss_pred             cceEEEEEEE
Confidence            4  4445443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.87  E-value=1.1e-08  Score=72.31  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.. +..+.                 ...|+.+......   ...+|.
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~   84 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSS---STAYLE   84 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGG---TEEEEE
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCC---CEEEEE
Confidence            34456689999999999999866  6799998741 21110                 1245555433211   123699


Q ss_pred             EcCCCCCCCeEEEEEEEcC----CCceEEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNT----LGGSEGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.|.    .+.....+.|.|..
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            9999999999999999987    22223345555553

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.87  E-value=9.8e-09  Score=64.70  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=59.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC---CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP---KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ..++ .+.+.+|+++.|.|.+.+.+   .+.+.|++.. +.   .+.         ...|+...... .    ..+|.|.
T Consensus         5 ~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~----~~~L~I~   78 (120)
T 1oaq_L            5 TQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-N----KAALTIT   78 (120)
T ss_dssp             EECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-T----EEEEEEE
T ss_pred             EcCC-cEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCC-C----eEEEEEC
Confidence            3444 47899999999999998775   5689998751 11   111         12456554322 1    2479999


Q ss_pred             CCCCCCCeEEEEEEEcCCCce-EEEEEEEEecc
Q psy16261         67 SLSKSDFGTYKCNAKNTLGGS-EGVIKVYNIGY   98 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~   98 (158)
                      +++.+|+|.|.|.+.+..... ...+.|.|...
T Consensus        79 ~~~~~DsG~Y~C~~~~~~~~~fg~gt~L~V~~~  111 (120)
T 1oaq_L           79 GAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQ  111 (120)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECC-
T ss_pred             CCChhhCeEEEEEEccCCCcEECCCEEEEEcCC
Confidence            999999999999998764311 12346666543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.87  E-value=1.2e-08  Score=63.66  Aligned_cols=91  Identities=19%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             cCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-------Ceeee---------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-------GSLIH---------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      .+..+.+.+|+++.|.|.....  ....+.|++..       ...+.         ..+|+.+...   ......+|.|.
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~   79 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGN---ISEGNVSLTIE   79 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSC---GGGTBCCEEES
T ss_pred             CccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecC---ccCCeEEEEEc
Confidence            3556779999999999998753  34689999873       11111         1123332211   01112369999


Q ss_pred             CCCCCCCeEEEEEEEcCCCceEEEEEEEEecc
Q psy16261         67 SLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY   98 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   98 (158)
                      +++.+|+|.|.|.+.+........+.|.|...
T Consensus        80 ~v~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (115)
T 2or7_A           80 NTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPE  111 (115)
T ss_dssp             SCCGGGCEEEEEEECCTTSCEEEEEEEEEESC
T ss_pred             cCCHHHCEEEEEEEECCCceeEEEEEEEEcCC
Confidence            99999999999999876554566677776554

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.87  E-value=1.4e-08  Score=63.58  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee------------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      +...+..+.+.+|+++.|.|.+... +.+.+.|++.. +.   .+.            ...|+.+.....   ....+|.
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~   79 (116)
T 1tvd_A            3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILT---QKAFHLV   79 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGG---GTEEEEE
T ss_pred             eecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecC---CCEEEEE
Confidence            3455777889999999999999764 55689998752 11   111            034555543210   1124799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.+.
T Consensus        80 I~~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           80 ISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECT
T ss_pred             EccCChHHCEEEEEEEeCC
Confidence            9999999999999999884

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.86  E-value=1.1e-09  Score=75.15  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             EecCCCEEEEeEEeecC---C-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESYP---K-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p---~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.|.+   . ..+.|+++ +..+.............+.+...+.|.|.+++.+|.|.|+|.|.|..+.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVD-DVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEET-TEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEEC-CccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            67899999999999985   2 38999999 5544321100000011122333457999999999999999999998885


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus        94 ~   94 (207)
T 2vol_A           94 A   94 (207)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.86  E-value=9.5e-09  Score=63.87  Aligned_cols=76  Identities=18%  Similarity=0.319  Sum_probs=54.9

Q ss_pred             eecCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCC-Ce---eee----c-----------CCeEEEEEeecccceEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVE-SYPKPITFWTHEN-GS---LIH----E-----------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~-~~---~~~----~-----------~~~~~~~~~~~~~~~~~~~   62 (158)
                      ...+..+.+.+|+.+.|.|.+. +.+.+.+.|++.. +.   .+.    .           ..|+.+.... +    ..+
T Consensus         3 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~-~----~~~   77 (111)
T 2qhl_A            3 IKELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVND-Q----KFD   77 (111)
T ss_dssp             CCBCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESS-S----BEE
T ss_pred             cCCCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcC-C----eEE
Confidence            3456777889999999999998 7777789998741 11   111    0           2455544321 1    237


Q ss_pred             EEEcCCCCCCCeEEEEEEEcC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        78 L~I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           78 LNIIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             EEECCCChhHCEEEEEEEccC
Confidence            999999999999999999885

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.85  E-value=8.5e-09  Score=72.82  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---e-ecC-----------C-eEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---I-HEG-----------S-RYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~-~~~-----------~-~~~~~~~~~~~~~~~~~l~   64 (158)
                      +...+..+.+.+|+.+.|.|.+.+.+.+.+.|++.. +..   + ...           . |+.+....  ..   . |.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~---~-L~   77 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT--DT---E-LR   77 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCS--SS---C-CE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCC--CC---e-EE
Confidence            344566788999999999999999889999998731 111   1 000           1 44333322  00   1 99


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.+++.+|+|.|.|.+.+..+
T Consensus        78 I~~v~~~DsG~Y~C~~~~~~~   98 (253)
T 3to4_D           78 LQVANMSQGRTLYCTSSADHW   98 (253)
T ss_dssp             EEEESCSSCEEEEEEEECSCC
T ss_pred             EccCChhhCeEEEEEEecCCC
Confidence            999999999999999987644

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.85  E-value=2.2e-08  Score=69.99  Aligned_cols=83  Identities=13%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             ecC-CCEEEEeEEeec-CCC-eeEEEc-CCCeeeecCCeEEEEEeecccceEEEEEEEcCCCC--CCCeEEEEEEEcCCC
Q psy16261         12 RLA-APLTLDCHVESY-PKP-ITFWTH-ENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK--SDFGTYKCNAKNTLG   85 (158)
Q Consensus        12 ~~g-~~v~l~C~~~g~-p~p-~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~--~d~G~Y~C~a~n~~g   85 (158)
                      ..| +.+.|.|.+.+. |.| .++|++ + +..+.....+.... ..+.|...+.|.|.....  .|.|.|+|.+.|..+
T Consensus       138 ~~g~~~v~L~C~~~g~~P~p~~v~W~~~~-g~~l~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~  215 (232)
T 1dn0_B          138 PSDTSSVAVGCLAQDFLPDSITFSWKYKN-NSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG  215 (232)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETT-SCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             CCCCCcEEEEEEEEEEeCCCeEEEEEcCC-CCceeeEEECCccc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCC
Confidence            367 899999999986 776 999999 7 76654300000000 113455566899998887  789999999999988


Q ss_pred             ceEEEEEEEEe
Q psy16261         86 GSEGVIKVYNI   96 (158)
Q Consensus        86 ~~~~~~~l~v~   96 (158)
                      .......+.+.
T Consensus       216 ~~~~~~~i~~~  226 (232)
T 1dn0_B          216 NKEKNVPLPVI  226 (232)
T ss_dssp             CEEEEEECCC-
T ss_pred             CcceeEecCCC
Confidence            77665555443

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.85  E-value=4.5e-08  Score=69.76  Aligned_cols=77  Identities=14%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +..+.                 ...|+.+.....   ....+|.
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   88 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKS---SSTVYIQ   88 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEE
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCC---CCEEEEE
Confidence            35567799999999999999876  6789999862 11110                 124555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      |.+++.+|+|.|.|.+.|..
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYV  108 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTT
T ss_pred             EcCCCcccCeEEEEEEecCC
Confidence            99999999999999999864

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.85  E-value=2.8e-08  Score=68.92  Aligned_cols=77  Identities=18%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---eee--------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LIH--------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|++.+ +.   .+.              ...|+.+.....   ....+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I   83 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNS---KNTLYLQM   83 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETT---TTEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCC---CCEEEEEE
Confidence            4566789999999999998876  4789999852 11   110              124555543210   01247999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+++.+|+|.|.|.+.+..|
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~  103 (223)
T 1dee_B           84 NSLRAEDTAVYYCAKVKFYD  103 (223)
T ss_dssp             CSCCGGGCEEEEEEEESSSS
T ss_pred             CCCCHHHCEEEEEEEecccc
Confidence            99999999999999998753

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.84  E-value=1.4e-09  Score=75.63  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=54.4

Q ss_pred             cCCCEEEEeEEeec-C-CCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVESY-P-KPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +|+.+.|.|.+.+. | .+.+.|+++ +..+..+.  ........++.+...+.|.|.....+|.|.|+|.|.|......
T Consensus       149 ~g~~v~l~C~~~~~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          149 KSGTASVVCLLNNFYPREAKVQWKVD-NALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCceEEEEEEcccCCCceEEEEEEC-CCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            47789999999984 4 479999999 77665431  1111122223455566799999999999999999999876544


Q ss_pred             E
Q psy16261         89 G   89 (158)
Q Consensus        89 ~   89 (158)
                      .
T Consensus       228 ~  228 (237)
T 3sob_L          228 V  228 (237)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.84  E-value=3.2e-08  Score=62.67  Aligned_cols=78  Identities=28%  Similarity=0.464  Sum_probs=55.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce----eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS----LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      ++..+..+.+.+|+++.|.|.+.+..  .+.+.|++.. +.    .+....|+........   ...+|.|.+++.+|+|
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~---~~~~L~I~~~~~~DsG   79 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS---KSFSLRINDLTVKDSG   79 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             cEECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCC---CEEEEEECCCChhhCE
Confidence            44557778899999999999997753  4589999862 11    1223356654432111   1347999999999999


Q ss_pred             EEEEEEEc
Q psy16261         75 TYKCNAKN   82 (158)
Q Consensus        75 ~Y~C~a~n   82 (158)
                      .|.|.+..
T Consensus        80 ~Y~C~~~~   87 (121)
T 2i24_N           80 TYRCKPES   87 (121)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999875

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.84  E-value=2e-09  Score=73.74  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .|+.+.|.|.+.|.+++  .+.|+++ +..+..+.  .........+.+...+.|.|......|.|.|+|.|.|.....
T Consensus       126 ~~~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          126 GTGSATLVCFVNNFYPKDINVKWKVD-GSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCEEEEEEET-TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CCCCcEEEEEEeeecCCceEEEEEEC-CcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            57789999999987653  8999999 87775431  111122222445556678999888889999999999986443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.84  E-value=1.4e-08  Score=68.93  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=46.3

Q ss_pred             cCC-CEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCC-CCeEEEEEEEcCCCceEE
Q psy16261         13 LAA-PLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKS-DFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        13 ~g~-~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~-d~G~Y~C~a~n~~g~~~~   89 (158)
                      .|. .+.|.|.+.+. |.|.+.|+++ +..+..+.                .|.|...... |.|.|+|.|.|.+|..+.
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~-g~~l~~~~----------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEAL-GNTLSSQP----------------NLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEET-TEEEESSS----------------EEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeC-CEEcCCCC----------------eEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            344 79999999995 5789999999 76553322                3555444444 899999999999998765


Q ss_pred             EEE
Q psy16261         90 VIK   92 (158)
Q Consensus        90 ~~~   92 (158)
                      .+.
T Consensus       185 ~~~  187 (193)
T 2if7_A          185 SVS  187 (193)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.83  E-value=4.6e-08  Score=67.68  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---eee--------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LIH--------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +.   .+.              ...|+.+.....   ....+|.
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~   82 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNA---KNSLYLQ   82 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSS---SCEEEEE
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCC---CCEEEEE
Confidence            34557799999999999998876  5789998752 11   111              124565553210   1124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCCc---eEEEEEEEEec
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLGG---SEGVIKVYNIG   97 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~   97 (158)
                      |.+++.+|+|.|.|.+.+..+.   ....+.|.|..
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            9999999999999999987553   12234666654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.83  E-value=2.1e-09  Score=73.74  Aligned_cols=72  Identities=18%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             ecCCCEEEEeEEeec-CCC-eeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVESY-PKP-ITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+|+.+.|.|.+.|. |.| .+.|+++ +..+.  .....  . .. +.+...+.|.|..+..+| |.|+|.|.|..|..
T Consensus       131 ~~g~~v~L~C~~~g~~P~p~~v~W~~~-~~~~~~~~~~~~--~-~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          131 QTNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVHTFPAV--L-QS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCE--E-ET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             ccCCcEEEEEEEeeEecCCcEEEEeeC-CcccceEEcCCc--c-CC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            478999999999997 888 9999998 55321  11111  1 11 234445679999988877 99999999998876


Q ss_pred             EE
Q psy16261         88 EG   89 (158)
Q Consensus        88 ~~   89 (158)
                      ..
T Consensus       205 ~~  206 (210)
T 3d9a_H          205 KV  206 (210)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.82  E-value=2.8e-08  Score=61.78  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ...+..+.+.+|+.+.|.|.+.+.+.+.+.|++.. +.   .+.         ...|+.+......   ...+|.|.+++
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~   80 (112)
T 2z35_A            4 TQTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEA---TSFHLQKASVQ   80 (112)
T ss_dssp             ECSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTT---TBCCEEESSCC
T ss_pred             EeCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCC---CEEEEEECCCC
Confidence            44567788999999999999988777899998752 11   111         0134444311101   12369999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|+|.|.|.+.
T Consensus        81 ~~DsG~Y~C~~~   92 (112)
T 2z35_A           81 ESDSAVYYCALS   92 (112)
T ss_dssp             STTCSEEEEEEE
T ss_pred             hhhCEEEEEEEE
Confidence            999999999998

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.82  E-value=2.1e-08  Score=70.37  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             ceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|+++. +..+.                 ...|+.+.....   ....+|.|.
T Consensus       139 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~  215 (250)
T 3esu_F          139 GPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS---SSTAYMQLS  215 (250)
T ss_dssp             CCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEEC
T ss_pred             CceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC---CCeEEEEEC
Confidence            445688999999999999877  7899999861 11110                 114555543321   112469999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy16261         67 SLSKSDFGTYKCNAKN   82 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n   82 (158)
                      +++.+|+|.|.|.+.+
T Consensus       216 ~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          216 SLTSVDSAVYFCARSG  231 (250)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCcccCEEEEEEEec
Confidence            9999999999999997

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.82  E-value=3.5e-09  Score=73.05  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             EecCCCEEEEeEEeec-CCC-eeEEEcCCCeee--ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY-PKP-ITFWTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.|. |.| .+.|+++ +...  .......   .. +.+...+.|.|..+..+| |.|+|.|.|..|.
T Consensus       137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~-~~~~~~~~~~~~~---~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKGYFPEPVTVKWNYG-ALSSGVRTVSSVL---QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             CSCSSSEEEEEEEEEEBSSCCEEEEGGG-TCCTTEEECCCEE---ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEEecC-CcccceEEcCCcc---cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence            3479999999999997 888 9999998 4421  0111110   11 234445679999988866 9999999999997


Q ss_pred             eEEEEE
Q psy16261         87 SEGVIK   92 (158)
Q Consensus        87 ~~~~~~   92 (158)
                      ....+.
T Consensus       211 ~~~~~~  216 (220)
T 1pz5_B          211 VDLIKE  216 (220)
T ss_dssp             EEEEEE
T ss_pred             Eeeeec
Confidence            666554

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.82  E-value=3.2e-08  Score=61.91  Aligned_cols=78  Identities=19%  Similarity=0.330  Sum_probs=54.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee--c--------CCeEEEEEeecccceEEEEEEEc
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH--E--------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ++..+..+.+.+|+++.|.|.+.+. +.+.+.|++.. +.   .+.  .        ..|+.+.....   ....+|.|.
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~   79 (116)
T 1fo0_A            3 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP---KSSIGLIIT   79 (116)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGG---GTEEEEEEC
T ss_pred             cCcCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCC---CCEEEEEEC
Confidence            3455677889999999999999876 55689998752 11   110  0        13555532111   113479999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy16261         67 SLSKSDFGTYKCNAKN   82 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n   82 (158)
                      +++.+|+|.|.|.+.+
T Consensus        80 ~~~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           80 ATQIEDSAVYFCAMRG   95 (116)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCChhhCEEEEEEEEc
Confidence            9999999999999987

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.81  E-value=2.3e-07  Score=58.79  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCC----ee-eec--------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPK-PITFWTHENG----SL-IHE--------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~----~~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+..+.+.+|+.+.|.|...+... ..+.|++...    .. +..        .+|+.+.....   ....+|.|.+++.
T Consensus         8 ~p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~l~~   84 (124)
T 2nms_A            8 GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK---NRTFTVTMEDLMK   84 (124)
T ss_dssp             CCSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETT---TTEEEEEECSCCG
T ss_pred             cccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCc---CCEEEEEEeCCCH
Confidence            345677899999999999876543 3689998621    11 111        13444432211   1134799999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeccCCCC
Q psy16261         71 SDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      +|+|.|.|.+..........+.|.|...+..+
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~~~~  116 (124)
T 2nms_A           85 TDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQ  116 (124)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             HHCEEEEEEEEcCCCCccEEEEEEEeCCCcCC
Confidence            99999999998764434556777777765443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.81  E-value=6.9e-08  Score=68.22  Aligned_cols=76  Identities=18%  Similarity=0.287  Sum_probs=52.8

Q ss_pred             cCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce---ee-e-------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS---LI-H-------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~---~~-~-------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+++.|.|.+.+.  +...+.|++.. +.   .+ .             ...|+.+.....   ....+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   82 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNA---KNTLFLQ   82 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGG---GTEEEEE
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCC---CCEEEEE
Confidence            3456678999999999999873  35689998741 11   11 0             124555543321   1234799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~  101 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPA  101 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCB
T ss_pred             ECCCChhhCEEEEEEEecC
Confidence            9999999999999999885

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.81  E-value=9e-08  Score=59.72  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=53.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec---CCCeeEEEcCC-C---eeeec-------------CCeEEEEEeecccceEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY---PKPITFWTHEN-G---SLIHE-------------GSRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~-~---~~~~~-------------~~~~~~~~~~~~~~~~~~   61 (158)
                      ++.++ .+.+.+|+.+.|.|.+...   +...+.|++.. +   ..+..             ..|+...... .  ....
T Consensus         2 v~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~--~~~~   77 (116)
T 3bj9_1            2 LHQPP-AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDV-A--RNRG   77 (116)
T ss_dssp             EECCS-EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEG-G--GTEE
T ss_pred             EecCC-cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecC-C--CceE
Confidence            34444 5789999999999999754   45689998752 1   11110             1344443321 0  1134


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +|.|.+++.+|+|.|.|.+.+..
T Consensus        78 sL~I~~~~~~DsG~Y~C~~~~~~  100 (116)
T 3bj9_1           78 YLSISELQPEDEAMYYCAMGARS  100 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSS
T ss_pred             EEEECCCChhHCEEEEEEEeCCC
Confidence            79999999999999999998753

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.81  E-value=3.3e-08  Score=68.11  Aligned_cols=89  Identities=20%  Similarity=0.186  Sum_probs=59.4

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee----ee------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL----IH------------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~----~~------------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|++.+ +..    +.            ...|+.+.....   ...++|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~   83 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS---KSQVFLKMN   83 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT---TTEEEEEES
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC---CceEEEEEC
Confidence            4556789999999999998865  4789998752 111    11            124555543210   012479999


Q ss_pred             CCCCCCCeEEEEEEEcCCCc---eEEEEEEEEec
Q psy16261         67 SLSKSDFGTYKCNAKNTLGG---SEGVIKVYNIG   97 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~   97 (158)
                      +++.+|+|.|.|.+.|..+.   ....+.|.|..
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             CCCcccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            99999999999999987432   12235666653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.81  E-value=2.7e-08  Score=70.24  Aligned_cols=77  Identities=16%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.. +..+.                 ...|+.+......   ...+|
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~L   87 (256)
T 3juy_B           11 VQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA---NTAYM   87 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT---TEEEE
T ss_pred             EecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCC---CEEEE
Confidence            34566778999999999999883  67799999641 11100                 0135555432211   12469


Q ss_pred             EEcCCCCCCCeEEEEEEEcC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|.+++.+|+|.|.|.+.|.
T Consensus        88 ~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           88 ELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCC
T ss_pred             EECCCCcccCEEEEEeEEec
Confidence            99999999999999999996

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.81  E-value=1.6e-08  Score=68.87  Aligned_cols=66  Identities=18%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+.+|+.+.|.|.+.+ +.+.+.|+|+ +..+...........+    .....|.|.+++  |+|.|+|.|.+.
T Consensus       118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~-g~~~~~~~~~~~~~~~----~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS-SYDMYHLSRE-GEAHERRLPAGPKVNG----TFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEET-TCSSCEEEECEEEETT----EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC-CCceEEEEEC-CcccCcccccccccCC----ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            4778999999999986 5689999999 6544322111111100    012479999998  999999999865

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.81  E-value=1.9e-08  Score=69.72  Aligned_cols=78  Identities=13%  Similarity=0.231  Sum_probs=54.4

Q ss_pred             ecCCCEEEEeEEeec-CCC-eeEEEc-CCCeeeecCCeEEEEEeecccceEEEEEEEcCCCC--CCCeEEEEEEEcCCCc
Q psy16261         12 RLAAPLTLDCHVESY-PKP-ITFWTH-ENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK--SDFGTYKCNAKNTLGG   86 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~p-~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~--~d~G~Y~C~a~n~~g~   86 (158)
                      .+|+.+.|.|.+.+. |.| .++|++ + +..+.....+... ...+.|...+.|.|.....  .|.|.|+|.+.|..+.
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~-g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKN-NSDISSTRGFPSV-LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETT-SCBCSCEEECCCE-EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccC-CCccceeEECCcc-ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            478899999999997 777 999999 7 6665330000000 0113444556799988776  7899999999999887


Q ss_pred             eEEEE
Q psy16261         87 SEGVI   91 (158)
Q Consensus        87 ~~~~~   91 (158)
                      ....+
T Consensus       217 ~~~~~  221 (223)
T 1dee_B          217 KEKDV  221 (223)
T ss_dssp             EEEEE
T ss_pred             Ccccc
Confidence            65543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.80  E-value=2.4e-08  Score=71.15  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+. ..+.+|+++.|.|.+.+ +.+.+.|+|+ +..+.....   .. ..........|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~-g~~~~~~~~---~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~   84 (257)
T 1b6u_A           12 AHPG-PLVKSEETVILQCWSDV-RFQHFLLHRE-GKFKDTLHL---IG-EHHDGVSKANFSIGPMMQDLAGTYRCYGSVT   84 (257)
T ss_dssp             CBSC-SEEESSCCEEEEEEESS-CCSEEEEEEE-STTCEEEEE---EC-BCCTTCEEEEEEECSCCTTTCEEEEEEEECS
T ss_pred             EcCC-CEecCCCCEEEEEecCC-CCcEEEEEEC-CCCCCccee---ee-eccCCCceEEEEeecCCcccCEEEEEeEecc
Confidence            3444 45789999999999975 5678999999 543321100   00 0000112347999999999999999999864


Q ss_pred             CC-----ceEEEEEEEEec
Q psy16261         84 LG-----GSEGVIKVYNIG   97 (158)
Q Consensus        84 ~g-----~~~~~~~l~v~~   97 (158)
                      ..     ..+..+.|.|.+
T Consensus        85 ~~~~~~s~~S~~~~L~V~~  103 (257)
T 1b6u_A           85 HSPYQLSAPSDPLDIVITG  103 (257)
T ss_dssp             SCTTSCCCCCCCEEEEEEC
T ss_pred             CCCccccccCCCEEEeccc
Confidence            21     124445666654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.80  E-value=2.1e-09  Score=75.70  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=53.8

Q ss_pred             EecCCCEEEEeEEeec---CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY---PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~---p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.+.   |.+ .+.|+++ +..+............++.+...+.|.|.+++.+|.|.|.|.+.|..+.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFID-DVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEES-SCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEEC-CccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            5689999999999987   777 8999999 4443221100000111123445568999999999999999999998875


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus       108 ~  108 (239)
T 1i1c_A          108 A  108 (239)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.79  E-value=4.9e-08  Score=68.42  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             EEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee----------------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          9 IGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH----------------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ..+.+|+.+.|.|.+.+.|  .+.+.|++++ +..+.                ...|+.+......   ...+|.|.+++
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~  208 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSK---NQYYLDLNSVT  208 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTT---TEEEEEECSCC
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCC---CEEEEEECCCC
Confidence            3478899999999999876  4789999852 22211                1345554432100   12479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.|.|.
T Consensus       209 ~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          209 TEDTATYYCANXDG  222 (242)
T ss_dssp             GGGCEEEEEEETTS
T ss_pred             cCcCEEEEEeccCC
Confidence            99999999999984

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.79  E-value=3.8e-08  Score=69.31  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             EEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee------e-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI------H-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+      .           ...|+.+......   ....|.|.++
T Consensus       144 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v  220 (256)
T 3ux9_B          144 GLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSK---NTLYLQMNSL  220 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTT---TEEEEEECSC
T ss_pred             eEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCC---CEEEEEECCC
Confidence            3478899999999999877  7899999862 1111      0           1135555543211   1246999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+.|..
T Consensus       221 ~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          221 RAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             ChhhCEEEEEEEEcCC
Confidence            9999999999999963

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.79  E-value=1.3e-07  Score=65.20  Aligned_cols=89  Identities=17%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-------------------cCCeEEEEEeecccceEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-------------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      .+..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +..+.                   ...|+.+.....   ....+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~s   82 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDS---KNTAF   82 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGG---GTEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCC---CCEEE
Confidence            34556789999999999998744  5789998741 11110                   124565554321   11347


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCC--CceEEEEEEEEe
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTL--GGSEGVIKVYNI   96 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~--g~~~~~~~l~v~   96 (158)
                      |.|.+++.+|+|.|.|.+.+..  ......+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           83 LQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             EEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             EEECCCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence            9999999999999999999863  122233455554

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.78  E-value=3.5e-09  Score=74.06  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=54.6

Q ss_pred             EEecCCCEEEEeEEeec-CC-C-eeEEEcCCCeee-ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESY-PK-P-ITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~-p~-p-~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+.+|+.+.|.|.+.|. |. | .++|+++ +..+ ...... .....++.|...+.|.|.++..+|.|.|+|.+.|..+
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~-g~~~~~~~~~~-~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  101 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDSSLSVTWTRE-KSGNLRPDPMV-LQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL  101 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCTTCEEEEECS-SSSCCCCCCCE-EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             hcccCCceEEEEEEeCccCCCCeEEEEEcC-Ceecccccccc-ceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence            35689999999999995 64 5 9999998 6655 322221 1112223444556899999999999999999999876


Q ss_pred             ce
Q psy16261         86 GS   87 (158)
Q Consensus        86 ~~   87 (158)
                      ..
T Consensus       102 ~~  103 (231)
T 2w59_A          102 PL  103 (231)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.78  E-value=1.3e-08  Score=70.40  Aligned_cols=75  Identities=15%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             ecCCCEEEEeEEeec-CC--CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         12 RLAAPLTLDCHVESY-PK--PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..|+.+.|.|.+.+. |.  +.+.|+++ +..+... ........++.|...+.|.|......|.|.|+|.|.|..+...
T Consensus       135 ~~g~~v~L~C~~~g~~P~~~~~v~W~~~-~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          135 LSSDPVIIGCLIHDYFPSGTMNVTWGKS-GKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCC-CSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cCCCcEEEEEEEEeEECCCcEEEEEecC-CEecceE-ecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            468999999999987 76  69999999 5543110 0000112224455566799999998999999999999988754

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.78  E-value=5.8e-08  Score=68.03  Aligned_cols=72  Identities=17%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             EEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+.                 ...|+.+.....   .....|.|.++
T Consensus       137 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v  213 (247)
T 1svz_A          137 ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTS---TSTAFLQINNL  213 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGG---GTEEEEEECSC
T ss_pred             eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecC---CCEEEEEECCC
Confidence            3488999999999999875  5699999862 11110                 124555443210   01247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.|.
T Consensus       214 ~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          214 KNEDTATYFCVRDRH  228 (247)
T ss_dssp             CGGGCEEEEEEEEEG
T ss_pred             ChhHCEEEEEEEecc
Confidence            999999999999985

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.78  E-value=8.4e-08  Score=59.89  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=52.7

Q ss_pred             CceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-C---eee-e--c----------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          6 SQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-G---SLI-H--E----------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~---~~~-~--~----------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +..+.+.+|+++.|.|...+. +.+.+.|++.. +   ..+ .  .          ..|+......     ...+|.|.+
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-----~~~~L~I~~   82 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSG-----ADRYLSISN   82 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEET-----TEEEEEESS
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccC-----CEEEEEECC
Confidence            667778999999999999875 56789998741 1   111 1  0          1345444321     124799999


Q ss_pred             CCCCCCeEEEEEEEcCC
Q psy16261         68 LSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~   84 (158)
                      ++.+|+|.|.|.+.+..
T Consensus        83 ~~~~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           83 IQPEDEAIYICGVGDTI   99 (115)
T ss_dssp             CCGGGCEEEEEEEEECC
T ss_pred             CChhHCEEEEEEEecCC
Confidence            99999999999998754

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.77  E-value=4.2e-08  Score=68.33  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCC--Cee--e---e-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHEN--GSL--I---H-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~--~~~--~---~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+.+.|.|.+.+.|.  +.+.|++++  ...  +   .           ...++.+.....   .....|.|
T Consensus       126 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I  202 (240)
T 1moe_A          126 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS---SNTAYLQL  202 (240)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEccc---CCEEEEEE
Confidence            34456788999999999999874  589999852  111  0   0           123444443210   01247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.|.+.
T Consensus       203 ~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          203 TSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CSCCGGGCEEEEEEECST
T ss_pred             CcCCHHHCEEEEEEEEec
Confidence            999999999999999853

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.77  E-value=2.4e-08  Score=71.66  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             EEEecCCCEEEEeEEee-cC-CCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCCC
Q psy16261          9 IGARLAAPLTLDCHVES-YP-KPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF   73 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p-~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~   73 (158)
                      +.+.+|+++.|.|.+.+ .+ .+.+.|++.. +..+.            ...|+......     ....|.|.+++.+|+
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~Ds  223 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG-----NTASLTITGLQPEDE  223 (280)
T ss_dssp             EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET-----TEEEEEECSCCGGGC
T ss_pred             EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCCHHHC
Confidence            67889999999999988 44 4789998731 22211            12455554332     123699999999999


Q ss_pred             eEEEEEEEcCCCc---eEEEEEEEEeccC
Q psy16261         74 GTYKCNAKNTLGG---SEGVIKVYNIGYF   99 (158)
Q Consensus        74 G~Y~C~a~n~~g~---~~~~~~l~v~~~~   99 (158)
                      |.|.|.+.|..+.   ....+.|.|...+
T Consensus       224 G~Y~C~~~~~~~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          224 ADYYCSTWDSSLSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             SEEEEEEEETTTTEEEEBCCCEEEEC---
T ss_pred             EEEEEEEecCCCCceEECCCEEEEECCCC
Confidence            9999999997632   1223566665543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.77  E-value=6.8e-08  Score=68.75  Aligned_cols=78  Identities=18%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.. +..+.                 ...|+.+.....   ....+|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   82 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS---KNTLYLQ   82 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETT---TTEEEEE
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCC---CCEEEEE
Confidence            34456789999999999999876  5789998852 21110                 124555543210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.+++.+|+|.|.|.+.|..|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSS
T ss_pred             ECCCChhhCEEEEEEEecCCC
Confidence            999999999999999999765

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.77  E-value=6.3e-08  Score=73.51  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee----e-------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI----H-------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~----~-------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+  .+.+.|++++ +..+    .             ...|+.+.....   ...++|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L   81 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNA---KNTLYL   81 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETT---TTEEEE
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCC---CCeEEE
Confidence            345566799999999999998875  5789998752 2211    0             124565543210   012479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCCce---EEEEEEEEec
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLGGS---EGVIKVYNIG   97 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~   97 (158)
                      .|.+++.+|+|.|.|.+.|..+..   ...+.|.|..
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           82 QMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             EECCCCHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            999999999999999999976542   2235566653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.77  E-value=2.1e-08  Score=69.77  Aligned_cols=78  Identities=17%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             EecCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +.+|+.+.|.|.+.|. |.| .+.|+++ +..+.......+. .. +.+...+.|.|..+..+| |.|+|.|.|..+...
T Consensus       142 ~~~g~~~~l~C~~~g~~P~p~~v~W~~~-~~~~~~~~~~~~~-~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~  217 (228)
T 3bae_H          142 DTTGSSVTLGCLVKGYFPEPVTLTWNSG-SLSSGVHTFPAVL-QS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK  217 (228)
T ss_dssp             --CCSEEEEEEEEEEEBSSCCEEEEGGG-TCCTTEEEEEEEE-ET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCCEEEEEEEccEeCCCEEEEEeeC-CcccCceEcCcee-CC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence            4579999999999986 777 9999998 5532111111111 11 344556789999988866 999999999988765


Q ss_pred             EEEE
Q psy16261         89 GVIK   92 (158)
Q Consensus        89 ~~~~   92 (158)
                      ....
T Consensus       218 ~~~~  221 (228)
T 3bae_H          218 VDKK  221 (228)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.77  E-value=2.3e-07  Score=59.64  Aligned_cols=94  Identities=12%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-Ce---eee----------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-GS---LIH----------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~~---~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +..+..+.+.+|+.+.|.|...... ...+.|++.. +.   .+.          ...|+.......   .....|.|.+
T Consensus        13 ~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~---~~~~~L~I~~   89 (134)
T 3bik_B           13 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN---RHDFHMNILD   89 (134)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTT---SSEEEEEECS
T ss_pred             EECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCC---CCEEEEEECC
Confidence            3456677899999999999997654 4689999752 11   111          124555542110   1134799999


Q ss_pred             CCCCCCeEEEEEEEcCCCce----EEEEEEEEeccC
Q psy16261         68 LSKSDFGTYKCNAKNTLGGS----EGVIKVYNIGYF   99 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~~~   99 (158)
                      ++.+|+|.|.|.+.+.....    ...+.|.|....
T Consensus        90 ~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           90 TRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             CCGGGCEEEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             CChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            99999999999998764321    224677776654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.77  E-value=8e-09  Score=75.36  Aligned_cols=75  Identities=17%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             CCEEEEeEEeec-C-CCeeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         15 APLTLDCHVESY-P-KPITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        15 ~~v~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      +.+.|.|.+.|. | .+.+.|+++ +..+...... ..... ++.+...+.|.|......|.|.|+|.|.|..+.....+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  102 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLED-GQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST  102 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEET-TEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEEC-CEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence            589999999996 3 468999999 7776544322 11222 23444556788888888899999999999876554443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.77  E-value=8.2e-09  Score=78.41  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             ecCCCEEEEeEEeecC----CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVESYP----KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p----~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+|+.+.|.|.+.|.+    .+.+.|+++ +..+............++.+...+.|.|.++..+|.|.|+|.|.|..|..
T Consensus       253 ~~G~~~~L~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          253 MISLSPIVTCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEET-TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             ecCCCcEEEEEEeecccCCCCeEEEEEEC-CccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            6799999999999984    358999999 66654332111111111223445689999999999999999999998876

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.76  E-value=3.1e-09  Score=73.82  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG   89 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~   89 (158)
                      .|+.+.|.|.+.|.+++  .+.|+++ +..+...... ......++.+...+.|.|..+..+|.|.|+|.|.|..+....
T Consensus       149 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          149 QANKATLVCLISDFFPGAVTVAWKAD-GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             TTSCCCEEECCCBCSSCCCEEEEEET-TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             cCCceEEEEEEEEEcCCceEEEEEEC-CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence            58899999999986443  8999999 7776543211 011112233444567999999999999999999998776544


Q ss_pred             EE
Q psy16261         90 VI   91 (158)
Q Consensus        90 ~~   91 (158)
                      .+
T Consensus       228 ~~  229 (234)
T 2j6e_L          228 TV  229 (234)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.76  E-value=1.6e-07  Score=64.53  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +...+..+.+.+|+.+.|.|.+.+.+ +.+.|++.. +.   .+.       ...|+.+....  ......+|.|.+++.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~~L~I~~v~~   80 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--KERRYSTLHIRDAQL   80 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECT--TTCSEEEEEECSCCG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEecc--CCCCEEEEEECCCCH
Confidence            34567778899999999999998754 589998852 11   111       23455554330  001234799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy16261         71 SDFGTYKCNAKNTL   84 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~   84 (158)
                      +|+|.|.|.+.+..
T Consensus        81 ~D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           81 EDSGTYFCAADTWH   94 (207)
T ss_dssp             GGCEEEEEEEECBC
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999999864

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.76  E-value=4.3e-09  Score=76.83  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=52.9

Q ss_pred             EecCCCEEEEeEEeec-CCC---eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVESY-PKP---ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.|. |.|   .+.|+++++..+........ ....+.+...+.|.|.+++.+|.|.|+|.|.|..+.
T Consensus       125 v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~  203 (323)
T 2wqr_A          125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP  203 (323)
T ss_dssp             HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC
Confidence            5579999999999986 456   89999974555433222211 111122334457999999999999999999998644


Q ss_pred             e
Q psy16261         87 S   87 (158)
Q Consensus        87 ~   87 (158)
                      .
T Consensus       204 ~  204 (323)
T 2wqr_A          204 R  204 (323)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.76  E-value=6.6e-08  Score=73.71  Aligned_cols=79  Identities=15%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-e-------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-H-------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~-------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.. +.   .+ .             ...|+.+......   ..+.|
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~L   81 (457)
T 1hzh_H            5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA---NTAYM   81 (457)
T ss_dssp             EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT---TEEEE
T ss_pred             ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCC---CEEEE
Confidence            345567799999999999999876  6789999741 21   11 0             1245555432100   12479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .|.+++.+|+|.|+|.+.|..|
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~  103 (457)
T 1hzh_H           82 ELRSLRSADTAVYYCARVGPYS  103 (457)
T ss_dssp             EECSCCGGGCEEEEEEECCCCC
T ss_pred             EECCCCcccCEEEEEEEecCCc
Confidence            9999999999999999999865

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.75  E-value=6.1e-08  Score=60.32  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=52.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-c------------CCeEEEEEeecccceEEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-E------------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-~------------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ...+..+.+.+|+.+.|.|.+.+.+.+.+.|++.. +.   .+. .            ..|+.......     . +|.|
T Consensus         5 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~-----~-~L~I   78 (112)
T 1fo0_B            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD-----T-ELRL   78 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET-----T-EEEE
T ss_pred             EeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCC-----C-eEEE
Confidence            44566778899999999999977677899998752 11   111 1            02333332220     1 6999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        79 ~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           79 QVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             EEESCCSCEEEEEEEESS
T ss_pred             cCCCHhHCEEEEEEEEcC
Confidence            999999999999999864

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.75  E-value=4e-08  Score=62.54  Aligned_cols=89  Identities=15%  Similarity=0.252  Sum_probs=57.3

Q ss_pred             CceEEEecCCCEEEEeEEeec---CCCeeEEEcCC-C---eee-e--c----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESY---PKPITFWTHEN-G---SLI-H--E----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~-~---~~~-~--~----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+.   ....+.|++.. +   ..+ .  .          ..|+.+.....   ....+|.|
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~---~~~~sL~I   83 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVA---RNRGYLSI   83 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGG---GTEEEEEE
T ss_pred             CCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCC---CCeEEEEE
Confidence            456789999999999999764   24689998752 1   111 1  0          13554443211   11347999


Q ss_pred             cCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261         66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      .+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus        84 ~~~~~~DsG~Y~C~~~~~~~~~~~~t~l~v~~  115 (126)
T 2h32_A           84 SELQPEDEAMYYCAMGARSSEKEEREREWEEE  115 (126)
T ss_dssp             CSCCGGGCEEEEEEEECSCCCCCCTTCC----
T ss_pred             CCCChhHCEEEEEEEEcCCCCcceeEEEeecc
Confidence            99999999999999998776554444444433

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.75  E-value=2.1e-08  Score=68.43  Aligned_cols=84  Identities=7%  Similarity=-0.034  Sum_probs=54.8

Q ss_pred             ecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE-
Q psy16261         12 RLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG-   89 (158)
Q Consensus        12 ~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-   89 (158)
                      ..++.+.+.|.+ .+.|.+.+.|.++ +..+......  .....+.+...+.|.|..+..+|.|.|+|.|.|..+.... 
T Consensus       134 ~~~~~~~~~c~~~~~~P~~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~  210 (225)
T 4fmk_A          134 GPQSVAVARCVSTGGRPPARITWISS-LGGEAKDTQE--PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPIL  210 (225)
T ss_dssp             SSSCEEEEEEEEEEEBSCCEEEEECS-SCCEEEEEEE--ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             cceeeeeeeeeecCCCCCCEEEEEEC-CccccCCcce--EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEE
Confidence            345556666654 5678889999998 4433222111  1111133444567999999999999999999999887644 


Q ss_pred             -EEEEEEecc
Q psy16261         90 -VIKVYNIGY   98 (158)
Q Consensus        90 -~~~l~v~~~   98 (158)
                       .++|.|.+.
T Consensus       211 ~~v~l~V~Y~  220 (225)
T 4fmk_A          211 LPVTLSVRYH  220 (225)
T ss_dssp             EEEECCBTTC
T ss_pred             EEEEEEEEEC
Confidence             455555554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.74  E-value=3.1e-09  Score=74.91  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=52.7

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      +|+.+.|.|.+.|. |.+ .+.|+++ +..+......  ......++.|...+.|.|..+..+|.|.|+|.|.|.....
T Consensus       164 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          164 TSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEET-TEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEeeEeCCCcEEEEEEC-CeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            47899999999995 444 7999999 7766443111  1111222345556789999999999999999999986553

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.74  E-value=5.2e-09  Score=71.81  Aligned_cols=73  Identities=15%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .|+.+.|.|.+.|. |.+ .+.|+++ +..+............++.|...+.|.+......|.|.|+|.|.|....
T Consensus       123 ~g~~~~L~C~~~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          123 AKDKVSLTCMITDFFPEDITVEWESN-GQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEET-TEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             cCCceEEEEEEeeEECCCCEEEEEEC-CEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            48899999999995 443 8999999 7765432211112233345666667888777667899999999998653

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.72  E-value=3.3e-07  Score=58.13  Aligned_cols=78  Identities=17%  Similarity=0.231  Sum_probs=54.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ++.++..+.+.+|+++.|.|.........+.|++.. +.   .+.            ...|+.+....    ....+|.|
T Consensus         8 V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~----~~~~sL~I   83 (125)
T 3r8b_B            8 VTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPS----QENFSLIL   83 (125)
T ss_dssp             EEEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEE----TTEEEEEE
T ss_pred             EEecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecC----CCEEEEEE
Confidence            345667778999999999999987665689998741 21   111            01344443221    11357999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           84 ELATPSQTSVYFCASGGG  101 (125)
T ss_dssp             TTCCGGGCEEEEEEEEET
T ss_pred             CCCChhhCEEEEEEEcCC
Confidence            999999999999998764

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.72  E-value=9.4e-08  Score=59.58  Aligned_cols=78  Identities=15%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCCC----e---eee--------------cCCeEEEEEeecccceEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENG----S---LIH--------------EGSRYHMWTEKFSSYKFY   60 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~----~---~~~--------------~~~~~~~~~~~~~~~~~~   60 (158)
                      +..+..+.+.+|+.+.|.|.+.+. +...+.|++...    .   .+.              ...|+.+......   ..
T Consensus         2 ~Q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~   78 (115)
T 2atp_B            2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDS---RR   78 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTS---SS
T ss_pred             ccCCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCC---CE
Confidence            345667789999999999999875 466899987621    1   110              0245555441110   11


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         61 MRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        61 ~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+|.|.+++.+|+|.|.|.+.+.
T Consensus        79 ~~L~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           79 PFLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEECCCCHHHCEEEEEeEccC
Confidence            37999999999999999998763

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.71  E-value=8.9e-09  Score=70.60  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             ecCCCEEEEeEEeecCC----CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVESYPK----PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~----p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+|+.+.|.|.+.|.++    ..+.|+++ +..+.............+.+...+.|.|......|.|.|+|.|.|..+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVD-GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEET-TEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEEC-CccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            68999999999999763    39999999 76554321100011111223333345443333344999999999998765

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.71  E-value=4.3e-09  Score=72.84  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             cCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         13 LAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .|+.+.|.|.+.| .|.+ .+.|+++ +..+............++.|...+.|.+......|.|.|+|.|.|....
T Consensus       131 ~g~~~~L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          131 SRKDVSLTCLVVGFNPGDISVEWTSN-GHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEET-TEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEeeeCCCcEEEEEEC-CEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            4889999999999 5766 8999999 7665332222222233344555666777666556789999999998654

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.71  E-value=1.7e-07  Score=59.41  Aligned_cols=74  Identities=18%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      +..+.+.+|+++.|.|...+.+  ...+.|++.. +   +.+.         ...|+......     ...+|.|.+++.
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-----~~~sL~I~~l~~   81 (123)
T 3t0v_A            7 SPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSG-----TSASLAISGLRS   81 (123)
T ss_dssp             CCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEECSCCG
T ss_pred             cCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccC-----CEEEEEECCCCH
Confidence            4577899999999999998764  3689998741 1   1121         12456554321     134799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy16261         71 SDFGTYKCNAKNTL   84 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~   84 (158)
                      +|+|.|.|.+.+..
T Consensus        82 ~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           82 EDEADYYCLSWDDS   95 (123)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             HHCEEEEEEEEcCC
Confidence            99999999998764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.71  E-value=4.9e-08  Score=74.89  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=53.7

Q ss_pred             EecCCCEEEEeEEeecCC---CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         11 ARLAAPLTLDCHVESYPK---PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      +.+|+.+.|.|.+.|.++   +.+.| .+ +...... .........+.+...+.|.|.++..+|.|.|+|.|.|..|..
T Consensus       259 ~~~G~~v~L~C~~~g~~p~~~~~i~W-~~-~~~~~~~-~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          259 LLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAV-QGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             hccCCceEEEEEEEcccCCCceEEEE-CC-CCcCCcc-ccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            478999999999998754   58999 44 3322111 111111111223345679999999999999999999998876


Q ss_pred             EEEEEE
Q psy16261         88 EGVIKV   93 (158)
Q Consensus        88 ~~~~~l   93 (158)
                      .....|
T Consensus       336 ~~~~~v  341 (475)
T 1iga_A          336 PLTATL  341 (475)
T ss_pred             ceEEEe
Confidence            544444

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.71  E-value=2.5e-09  Score=74.30  Aligned_cols=72  Identities=17%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecC-Ce-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEG-SR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +|+.+.|.|.+.|.+++  .+.|+++ +..+... .. .......++.+...+.|.|.....+|.|.|+|.|.|...
T Consensus       148 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          148 TSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEEC------CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             cCCceEEEEEEccccCCceEEEEEEC-CeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            48899999999996443  7999999 7665443 11 111111223445566899999999999999999999754

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.70  E-value=4.7e-08  Score=61.53  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=53.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecC----CCeeEEEcCC---Ceeee-----cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP----KPITFWTHEN---GSLIH-----EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      .|..+.+.+|+++.|.|.+...+    .+.+.|++..   +..+.     ...|+..............+|.|.+++.+|
T Consensus        13 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~D   92 (120)
T 3noi_A           13 QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHD   92 (120)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGG
T ss_pred             CCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhh
Confidence            45677899999999999998765    4579999873   23332     124554322110000112369999999999


Q ss_pred             CeEEEEEEEcC
Q psy16261         73 FGTYKCNAKNT   83 (158)
Q Consensus        73 ~G~Y~C~a~n~   83 (158)
                      +|.|.|.+...
T Consensus        93 sG~Y~C~v~~~  103 (120)
T 3noi_A           93 ASIYVCRVEVL  103 (120)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEEEC
Confidence            99999999853

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.69  E-value=9.6e-08  Score=67.93  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             ceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee---ee----------------cCCeEEEEEeecccceEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL---IH----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~---~~----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ....+.+|+.+.|.|.+.+.+.  +.+.|+++. +..   +.                ...++.+.....   .....|.
T Consensus       159 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~  235 (268)
T 1x9q_A          159 GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDS---KSSVYLQ  235 (268)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGG---GTEEEEE
T ss_pred             CceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCC---CCEEEEE
Confidence            3456889999999999998764  789998851 111   10                124555443210   0124799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.|.
T Consensus       236 I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          236 MNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCCHHHCEEEEEEEccC
Confidence            9999999999999999885

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.69  E-value=8.4e-08  Score=61.87  Aligned_cols=73  Identities=15%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             ceEEEecCCCEEEEeEEeecC---CCeeEEEcCCC----eeee---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYP---KPITFWTHENG----SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ..+.+.+|+++.|.|.+...+   .+.+.|++...    +.+.         ...|+...... .    ..+|.|.+++.
T Consensus        13 ~~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~-~----~~sL~I~~v~~   87 (135)
T 1p4b_L           13 SALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-D----KAALTITGAQT   87 (135)
T ss_dssp             SEEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEET-T----EEEEEEESCCG
T ss_pred             CcEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCC-C----EEEEEECCCCh
Confidence            348899999999999998765   56899987521    1111         12456554322 1    24799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy16261         71 SDFGTYKCNAKNTL   84 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~   84 (158)
                      +|+|.|.|.+.+..
T Consensus        88 ~DsG~Y~C~~~~~~  101 (135)
T 1p4b_L           88 EDEAIYFCALWYSN  101 (135)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             hHCEEEEEEEecCC
Confidence            99999999998753

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.69  E-value=1.7e-07  Score=65.37  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-e------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-H------------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~------------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|++.. +.   .+ .            ...|+.+......   ...+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~---~~~~L~I~   83 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSK---NQFSLKLS   83 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTT---TEEEEEEC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCC---CEEEEEEC
Confidence            4456789999999999998865  5789998752 11   11 0            1245555432100   12379999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy16261         67 SLSKSDFGTYKCNAKN   82 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n   82 (158)
                      +++.+|+|.|.|.+.+
T Consensus        84 ~v~~~D~G~Y~C~~~~   99 (232)
T 1dn0_B           84 SVTAADTAVYYCARPP   99 (232)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             CCCcccCEEEEEEEec
Confidence            9999999999999983

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.69  E-value=1.2e-07  Score=67.38  Aligned_cols=72  Identities=17%  Similarity=0.297  Sum_probs=50.8

Q ss_pred             EEEecCCCEEEEeEEeecCC--CeeEEEcCC-Ce---eee---c-----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPK--PITFWTHEN-GS---LIH---E-----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~---~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+.+.|.|.+.+.+.  +.+.|+++. +.   .+.   .           ..|+.+.....   .....|.|.++
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v  224 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTS---SSTAFMQLNSL  224 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETT---TTEEEEEECSC
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCC---CCEEEEEECcC
Confidence            35788999999999998874  799999862 11   111   0           23444432110   01347999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.|.
T Consensus       225 ~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          225 TSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999995

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.68  E-value=1.9e-07  Score=65.83  Aligned_cols=77  Identities=21%  Similarity=0.355  Sum_probs=54.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +...+..+.+.+|+++.|.|.+. .+.+.+.|++.. +.   .+.            ...|+.+.....+    ..+|.|
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~L~I   80 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKE----SFPLTV   80 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTT----BCCEEE
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCC----EEEEEE
Confidence            34567778899999999999985 467899999852 11   111            1234444321101    136999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.|.
T Consensus        81 ~~v~~~D~G~Y~C~~~~~   98 (252)
T 1oga_E           81 TSAQKNPTAFYLCASSSR   98 (252)
T ss_dssp             CSCCSCCCEEEEEEEESS
T ss_pred             CcCChhhCEEEEEEEecC
Confidence            999999999999999986

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.68  E-value=1.3e-07  Score=63.94  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      .+..+.|.|.+.+.|.|.+.|+++ +..+ ..      ...        .+.+. ....|.|.|+|.|.|.++.......
T Consensus       114 ~~~~v~L~C~~~~~p~~~~~W~~~-g~~l-~~------~~~--------~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~~  176 (182)
T 1hnf_A          114 TCINTTLTCEVMNGTDPELNLYQD-GKHL-KL------SQR--------VITHK-WTTSLSAKFKCTAGNKVSKESSVEP  176 (182)
T ss_dssp             ETTTTEEEEECSSCSSCEEEEEES-SCEE-EE------ESS--------CEEEE-CCSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             ccCcEEEEeEccCCCCCEEEEEEC-CEEC-CC------CCc--------EEEEe-cccCCCcEEEEEEEeCCCCcEEcce
Confidence            345789999999999999999999 6665 11      111        23332 2578999999999999998877665


Q ss_pred             EE
Q psy16261         93 VY   94 (158)
Q Consensus        93 l~   94 (158)
                      +.
T Consensus       177 ~~  178 (182)
T 1hnf_A          177 VS  178 (182)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.68  E-value=3.8e-07  Score=56.76  Aligned_cols=79  Identities=13%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-ec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-HE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ..+..+.+.+|+.+.|.|.+.+.+  ...+.|++.. +.   .+ ..           ..|+.+.....   ....+|.|
T Consensus         4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   80 (114)
T 1u9k_A            4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS---EAMLQVQM   80 (114)
T ss_dssp             -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGG---GTEEEEEE
T ss_pred             cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCc---CCEEEEEE
Confidence            356677899999999999997643  4589999852 11   11 11           13444432211   11347999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+++.+|+|.|.|.+.+..+
T Consensus        81 ~~~~~~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           81 TDLQVTDSGLYRCVIYHPPN  100 (114)
T ss_dssp             CSCCGGGCEEEEEEEECTTS
T ss_pred             CCCChHHCEEEEEEEecCCC
Confidence            99999999999999998754

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.66  E-value=9.9e-09  Score=71.25  Aligned_cols=74  Identities=19%  Similarity=0.322  Sum_probs=51.3

Q ss_pred             ecCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         12 RLAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .+|+.+.|.|.+.|. |.| .+.|+++ +..+... ........++.|...+.|.|..+...| |.|+|.|.|..+...
T Consensus       141 ~~g~~v~L~C~~~g~~P~p~~v~W~~~-~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          141 TSGGTAALGCLVKDYFPEPVTVSWNSG-ALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             CCCCEEEEEEEEEEEBSSCCEEECCTT-SCCTTCE-ECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEEeEECCCeEEEEecC-CCcCCeE-ecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            468999999999987 776 9999998 5442110 000011222345556689999998888 999999999765443

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.64  E-value=9.9e-08  Score=68.47  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ceee----e-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GSLI----H-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~~~----~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+++.|.|.+.+.  +.+.+.|++.. +..+    .             ...|+.+.....   ....+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I   83 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQS---TRTAYMDL   83 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETT---TTEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCC---CCEEEEEE
Confidence            666779999999999999885  56789998741 1110    0             013454443211   11247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.|.
T Consensus        84 ~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           84 RSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             CSCCSTTCEECCEEECSS
T ss_pred             CCCChhhCEEEEEEEecC
Confidence            999999999999999986

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.64  E-value=9.6e-08  Score=59.64  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-Ce-----ee-ec------------CCeEEEEEeecccceEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-GS-----LI-HE------------GSRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~~-----~~-~~------------~~~~~~~~~~~~~~~~~~   61 (158)
                      ++..|..+.+.+|+++.|.|.+.+.. ...+.|++.. +.     .+ ..            ..|+...... +    ..
T Consensus         3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~-~----~~   77 (114)
T 2hp4_A            3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLG-D----TF   77 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEET-T----EE
T ss_pred             cEeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecC-C----EE
Confidence            34556667788999999999997543 5689998631 22     11 10            2345443322 1    23


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcC
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +|.|.+++.+|+|.|.|.+.+.
T Consensus        78 ~L~I~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           78 VLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCCHHHCEEEEEEEecC
Confidence            7999999999999999999874

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.63  E-value=2.6e-08  Score=70.97  Aligned_cols=81  Identities=19%  Similarity=0.178  Sum_probs=53.7

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC-----
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG-----   85 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-----   85 (158)
                      +.+|+++.|.|.+.+. .+.+.|+|+ +..+....+......+    .....|.|.+++  |+|.|+|.+.|...     
T Consensus       118 V~~G~~vtL~C~~~~~-~~~~~w~k~-g~~~~~~~~~~~~~~~----~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s  189 (257)
T 1b6u_A          118 VLAGESVTLSCSSRSS-YDMYHLSRE-GEAHERRFSAGPKVNG----TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWS  189 (257)
T ss_dssp             CBTTCEEEEEEECSSC-CSEEEEEET-TSSCEECCBCBCCSSS----CCBEEEEEEECC--SCEEEEEEEECSSCTTBBC
T ss_pred             cCCCCEEEEEEeCCCC-CcEEEEEEC-CcccCcccccccccCC----ceeEEEEecccc--cCEEEEEEEEcCCCCcccc
Confidence            6789999999999876 478999999 6554432211110000    012379999998  99999999997532     


Q ss_pred             ceEEEEEEEEeccC
Q psy16261         86 GSEGVIKVYNIGYF   99 (158)
Q Consensus        86 ~~~~~~~l~v~~~~   99 (158)
                      ..+..+.|.|.+.+
T Consensus       190 ~~S~pl~L~V~g~p  203 (257)
T 1b6u_A          190 NSSDPLLVSVTGNP  203 (257)
T ss_dssp             CCCCCEEECCBCCC
T ss_pred             cCCCCEEEEEeccC
Confidence            22445677777654

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.63  E-value=9.8e-08  Score=65.83  Aligned_cols=75  Identities=15%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             ecCCCEEEEeEEee-cCC-C-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVES-YPK-P-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g-~p~-p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+|+.+.|.|.+.+ .|. + .+.|+++ +..+............++.|...+.|.|......|.|.|+|.|.|..+..
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSES-GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCC-STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEEC-CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            47899999999998 665 4 8999998 65542111000110122345555679999999999999999999987654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.63  E-value=1.9e-07  Score=65.08  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=55.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce---ee-e------------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS---LI-H------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~---~~-~------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      +...+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.. +.   .+ .            ...|+.+.....   ....+
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~   80 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPS---ASTSI   80 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCT---TTEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCC---CCEEE
Confidence            3455777889999999999999875  56789998752 11   11 0            134555443210   01247


Q ss_pred             EEEcCCCCCCCeEEEEEEEcC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        81 L~I~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           81 LTIYSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             EEECSCCGGGCSEEEEEECCT
T ss_pred             EEECcCChhhCEEEEEEEECC
Confidence            999999999999999999984

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.63  E-value=6e-08  Score=68.54  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=55.1

Q ss_pred             EecCCCEEEEeEEee-cCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         11 ARLAAPLTLDCHVES-YPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      +..|+.+.|.|.+.+ .|.+ .+.|+++ +...... ........ +.|...+.|.|......| |.|+|.+.|..+...
T Consensus       136 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~-~~~~~~~-~~~~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~  211 (253)
T 3liz_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVH-TFPAVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  211 (253)
T ss_dssp             ---CCEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEE-ECCCEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred             cCCCCcEEEEEEEeeEeCCCeEEEEEeC-CeecceE-eCCccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence            446899999999998 6766 8999998 5421100 00000111 244445689999999999 999999999988776


Q ss_pred             EEEEEEEe
Q psy16261         89 GVIKVYNI   96 (158)
Q Consensus        89 ~~~~l~v~   96 (158)
                      ....|.+.
T Consensus       212 ~~~~~~~~  219 (253)
T 3liz_H          212 VDKKIVPR  219 (253)
T ss_dssp             EEEECCCC
T ss_pred             eEEEecCc
Confidence            66666544

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.63  E-value=5.2e-08  Score=65.11  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=45.3

Q ss_pred             EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      ..|.|.+.+.|.|.+.|+++ +..+....+.              .|.+.  ...|.|.|+|.|.|.++.......|
T Consensus       108 ~~L~C~~~~~p~p~i~W~~~-~~~l~~~~~~--------------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          108 ATLTCEVLEGTDVELKLYQG-KEHLRSLRQK--------------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             TEEEEECSSCSSCEEEEEET-TEEEEEESSS--------------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEEeCCCCCcEEEEEEC-CEECcCCcce--------------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            47999999999999999999 7766432211              23333  3778999999999999887766554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.62  E-value=6.8e-08  Score=65.04  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             cCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261         13 LAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI   91 (158)
Q Consensus        13 ~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   91 (158)
                      .+..+.|.|.+ .| |.|.+.|+++ +..+..      ....        +|.+..  .+|.|.|+|.|.|..+......
T Consensus       114 ~~~~v~L~C~~~~g-p~p~i~W~~~-~~~l~~------~~~~--------~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          114 ECSNATLTCEVLEG-TDVELKLYQG-KEHLRS------LRQK--------TMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             EGGGTEEEEECSSC-TTCEEEEEET-TEEEEE------ESSS--------EEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             cCCCEEEEEEeCCC-CCCEEEEEEC-CeECcC------CCCC--------EEEEEE--hhcCccEEEEEecCcCccccce
Confidence            45679999999 56 9999999999 766541      1111        455533  7899999999999988776554


Q ss_pred             EE
Q psy16261         92 KV   93 (158)
Q Consensus        92 ~l   93 (158)
                      .+
T Consensus       176 ~i  177 (180)
T 2dru_A          176 VV  177 (180)
T ss_dssp             CC
T ss_pred             eE
Confidence            43

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.62  E-value=1.3e-08  Score=69.69  Aligned_cols=72  Identities=14%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             CCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         14 AAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      |..+.|.|.+.|. |. +.++|+++ +..+............++.|...+.|.+......|.|.|+|.|.|....
T Consensus       124 ~~~~~L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          124 KNQVSLTCLVKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET-TEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEeCeECCCeEEEEEEC-CeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            5669999999995 44 38999999 7766432211222233344555666777766667899999999997643

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.62  E-value=8.9e-09  Score=72.13  Aligned_cols=75  Identities=16%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEe------ecccceEEEEEEEcCCCCCC-CeEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTE------KFSSYKFYMRLYIGSLSKSD-FGTYKCNAKNT   83 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~n~   83 (158)
                      +|+.+.|.|.+.|.|++  .+.|+++ +..+....+......      .++.|...+.|.|.....+| .|.|+|.|.|.
T Consensus       139 ~g~~v~L~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~  217 (246)
T 4dzb_B          139 HTQKATLVCLATGFYPDHVELSWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY  217 (246)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEET-TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEccCcCCceEEEEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEec
Confidence            38899999999997765  8999999 877765422211110      12445555679999888888 99999999997


Q ss_pred             CCceE
Q psy16261         84 LGGSE   88 (158)
Q Consensus        84 ~g~~~   88 (158)
                      .....
T Consensus       218 ~~~~~  222 (246)
T 4dzb_B          218 GLSEN  222 (246)
T ss_dssp             CBCTT
T ss_pred             CCCCc
Confidence            65443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.61  E-value=3.7e-07  Score=69.99  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---eee--------------cCCeEEEEEeecccceEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LIH--------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      .++..+.+.+|+.+.|.|.+.+.+  .+.+.|++.. +.   .+.              ...|+.+....   ....++|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L   82 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDT---SATTAYM   82 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcC---CCCeEEE
Confidence            456777899999999999998865  5689999852 11   110              12344443321   0113479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .|.+++.+|+|.|.|.+.|..|
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~  104 (475)
T 1iga_A           83 GLSSLRPEDTAVYYCARDPYGG  104 (475)
T ss_pred             EECCCChhhCEEEEEEEeccCC
Confidence            9999999999999999999865

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.61  E-value=2.9e-08  Score=79.35  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=60.2

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|+++ +..+.... +..+...+        .|.|.+++..|+|.|.|.|.|..+
T Consensus       541 ~~v~v~~g~~~~L~C~~~s-p~a~v~W~~~-~~~l~~~~~~~~~~~~~--------~LlI~~v~~~DsG~Y~C~A~e~~~  610 (663)
T 1olz_A          541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQ-NGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVYQCLSEERVK  610 (663)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEES-SSBCCCCSSSBCCTTTT--------CEEECSCCGGGCEEEEEEEEEECS
T ss_pred             eEEEEecCCcEEEEccCCC-CCCcEEEEEC-CeeccccCcceEEecCC--------eEEEEecCcccCeEEEEEEEECcc
Confidence            4567889999999999999 9999999999 66554321 21111122        599999999999999999999853


Q ss_pred             c-----eEEEEEEEEeccC
Q psy16261         86 G-----SEGVIKVYNIGYF   99 (158)
Q Consensus        86 ~-----~~~~~~l~v~~~~   99 (158)
                      .     ..+.+.|.|..+|
T Consensus       611 ~~~~~~~~~~~~l~V~v~P  629 (663)
T 1olz_A          611 NKTVFQVVAKHVLEVKVVP  629 (663)
T ss_dssp             SSEEEEEEEEEEEEEEC--
T ss_pred             CCCceEEEEEEEEEEEeCC
Confidence            3     3455666776654

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.61  E-value=2.4e-08  Score=63.46  Aligned_cols=93  Identities=16%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             EEEecCCCEEEEeEEeecCCC-----eeEEEcCCCeeeec-CCeEEEEEee----------cccceEEEEEEEcCCCC-C
Q psy16261          9 IGARLAAPLTLDCHVESYPKP-----ITFWTHENGSLIHE-GSRYHMWTEK----------FSSYKFYMRLYIGSLSK-S   71 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p-----~i~W~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~l~i~~v~~-~   71 (158)
                      .....++++.|.|.+...+..     .+.|.++ +..+.. ++.-......          +......++|.|.+++. +
T Consensus        11 ~~t~~n~~vtLpC~l~~~~~~~~~~m~V~W~~~-~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~s   89 (127)
T 2jjs_C           11 EFTFGNDTVVIPCFVTNMEAQNTTEVYVKWKFK-GRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVS   89 (127)
T ss_dssp             EECTTCSEEEECCBBSSCCCSSGGGEEEEEEET-TEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHT
T ss_pred             EEEecCCCEEEEEEeCCcCCCCcceEEEEEEEC-CeEeEeeCCceeeccccccccceEechhhhccCcEEEEEccccccc
Confidence            345578999999999864433     6889999 554332 1110000000          01112235899999998 6


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEeccCCCC
Q psy16261         72 DFGTYKCNAKNTLGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  102 (158)
                      |.|.|+|.+.+........+.|.|...+..|
T Consensus        90 D~G~YtC~v~~~~~~~~~~i~Lkv~~~~~~~  120 (127)
T 2jjs_C           90 HTGNYTCEVTELTREGETIIELKYRVVSWST  120 (127)
T ss_dssp             SCEEEEEEEEETTEEEEEEEEEEECCC----
T ss_pred             CCcEEEEEEEeCCceEEEEEEEEEEeccccC
Confidence            9999999999987777888888887765443

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.61  E-value=4.1e-07  Score=56.02  Aligned_cols=87  Identities=13%  Similarity=0.056  Sum_probs=54.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...+.. .+..|+.|.|.|..... ...+.|+|+ +.....  .........     .....|.|..++.+|+|.|.|..
T Consensus        13 ~a~P~~-vv~~G~~VtL~C~~~~~-~~~f~l~k~-g~~~~~~~~~~~~~~~~-----~~~~~f~i~~vt~~~aG~Y~C~~   84 (106)
T 3kgr_A           13 SAEPGT-VIPLGSHVTFVCRGPVG-VQTFRLERE-SRSTYNDTEDVSQASPS-----ESEARFRIDSVSEGNAGPYRCIY   84 (106)
T ss_dssp             EEESCS-EEETTCCEEEEEEECTT-CCEEEEEEG-GGTEEEEECCCEEEETT-----EEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCCC-ccCCCCeEEEEEEccCC-CcEEEEEEC-CCccccccccccccCCC-----CcceEEEecCCCcCCCceEEEEe
Confidence            334444 47889999999998653 357889999 654321  111111000     11247999999999999999998


Q ss_pred             EcCCCc--eEEEEEEEEec
Q psy16261         81 KNTLGG--SEGVIKVYNIG   97 (158)
Q Consensus        81 ~n~~g~--~~~~~~l~v~~   97 (158)
                      .+..+.  .+..+.|.|.+
T Consensus        85 ~~~~~~S~~Sdpl~L~Vtg  103 (106)
T 3kgr_A           85 YKPPKWSEQSDYLELLVKE  103 (106)
T ss_dssp             EETTEECCCCCCEEEEEEC
T ss_pred             eCCCcccCCCCCEEEEEeC
Confidence            875322  23345665543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.60  E-value=1.1e-07  Score=68.54  Aligned_cols=76  Identities=17%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---eee--------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LIH--------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+++.|.|.+.+.+  .+.+.|++.. +.   .+.              ...|+.+.....   ....+|.|
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I  105 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKS---SSTAYMEL  105 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGG---GTEEEEEE
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCC---CCEEEEEE
Confidence            4467789999999999998876  5789999852 11   110              013443332110   01247999


Q ss_pred             cCCCCCCCeEEEEEEEcCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+++.+|+|.|.|.+.|..
T Consensus       106 ~~v~~~DsG~Y~C~~~~~~  124 (291)
T 2gki_A          106 SSLTSEDSAVYYCARGAYK  124 (291)
T ss_dssp             CSCCGGGCEEEEEEEECGG
T ss_pred             CcCCHHHCEEEEEEEeccc
Confidence            9999999999999999874

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.60  E-value=5.5e-07  Score=56.61  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=51.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-e--c-----------CCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-H--E-----------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~--~-----------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+..+.+.+|+.+.|.|.+.+.+  ...+.|++.. +.   .+ .  .           ..|+.+.....   .....|.
T Consensus         6 qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~   82 (121)
T 1j05_H            6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS---SNTAYLQ   82 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGG---GTEEEEE
T ss_pred             CCCCEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCC---CCEEEEE
Confidence            34556789999999999998643  4689998752 11   11 1  0           13554443210   1134799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.+.
T Consensus        83 I~~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           83 LTSLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEBT
T ss_pred             ECCCCHHHCEEEEEEEEcC
Confidence            9999999999999999876

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.60  E-value=1.1e-06  Score=55.55  Aligned_cols=78  Identities=19%  Similarity=0.326  Sum_probs=53.2

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC--C--e-eee--------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN--G--S-LIH--------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~--~--~-~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+..+.+.+|+++.|.|......  ...+.|++..  .  . .+.        ...|+.+.....   ....+|.|.++
T Consensus        15 ~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~l   91 (122)
T 1hkf_A           15 SKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD---AGFFTVTMTDL   91 (122)
T ss_dssp             CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETT---TTEEEEEECSC
T ss_pred             cCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCc---CCEEEEEEeCC
Confidence            345667789999999999987532  3579998762  1  1 121        124565532211   11347999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+....
T Consensus        92 ~~~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           92 REEDSGHYWCRIYRPS  107 (122)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             CHHHCEEEEEEEEcCC
Confidence            9999999999998764

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.60  E-value=1.5e-06  Score=60.06  Aligned_cols=78  Identities=19%  Similarity=0.185  Sum_probs=54.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee-e--c------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI-H--E------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~-~--~------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..+..+.+.+|+.+.|.|.+.+...+.+.|++.. +.   .+ .  .      ..|+.......   .....|.|.+++
T Consensus         7 ~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~---~~~~sL~I~~~~   83 (210)
T 2eys_A            7 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDAD---TKQSSLHITASQ   83 (210)
T ss_dssp             EEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETT---TTEEEEEESSCC
T ss_pred             EEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCC---CCEEEEEEccCC
Confidence            34466778999999999999988777789998752 11   12 1  1      23444432110   112479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+.+.
T Consensus        84 ~~Dsg~Y~C~~~~~   97 (210)
T 2eys_A           84 LSDSASYICVVSDR   97 (210)
T ss_dssp             GGGCEEEEEEEESC
T ss_pred             cccCceEEEEEEcc
Confidence            99999999999874

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.59  E-value=3.8e-07  Score=57.26  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=51.9

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee---ec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI---HE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+.+  ...+.|++.. +.   .+   ..           ..|+.+.....   ....+|.|
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   83 (120)
T 3b9v_A            7 SGGGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTS---KNTAYLQM   83 (120)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGG---GTEEEEEE
T ss_pred             CCCEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCC---CCEEEEEE
Confidence            4457789999999999997643  5689998752 11   11   10           13555543210   11247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           84 NSLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             CSCCGGGCEEEEEEEECT
T ss_pred             CCCCHHHCEEEEEEEEcC
Confidence            999999999999999875

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.59  E-value=5.1e-07  Score=56.96  Aligned_cols=77  Identities=18%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-c-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-E-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ++..+..+.+.+|+++.|.|... .....+.|++.. +.   .+. .           ..|+.+....    ....+|.|
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I   78 (121)
T 2oi9_C            4 VTQSPRNKVAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPS----QENFSLTL   78 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCS----SSEEEEEE
T ss_pred             eEeCCCeEEecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCC----CCEEEEEE
Confidence            34557778899999999999964 345689998752 11   111 0           2344443211    01247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        79 ~~v~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           79 ESATPSQTSVYFCASGGG   96 (121)
T ss_dssp             SSCCGGGCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            999999999999999875

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.59  E-value=5.5e-07  Score=56.78  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCCC-e---e-ee-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHENG-S---L-IH-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~-~---~-~~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+..  ...+.|++... .   . +.             ...|+.+....   .....+|.|
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I   83 (123)
T 2wzp_D            7 SGGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDS---GKNTVYLQM   83 (123)
T ss_dssp             EECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEET---TEEEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeC---CCCEEEEEE
Confidence            4567799999999999997643  46799998621 1   1 11             02355554321   112357999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           84 NSLKPEDTAIYYCAARSG  101 (123)
T ss_dssp             CSCCGGGCEEEEEEEEES
T ss_pred             CCCCHHHCEEEEEEEecC
Confidence            999999999999999875

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.59  E-value=8.2e-07  Score=55.67  Aligned_cols=75  Identities=17%  Similarity=0.311  Sum_probs=51.8

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee---ec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI---HE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~---~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+++.|.|...+.+  ...+.|++.. +.   .+   ..           ..|+.+.....   ....+|.|
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   83 (120)
T 1n4x_H            7 SGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTS---TSTAFLQI   83 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGG---GTEEEEEE
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCC---CCEEEEEE
Confidence            4457799999999999997643  4679998752 11   11   10           13555543210   11347999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           84 NNLKNEDTATYFCVRDRH  101 (120)
T ss_dssp             CSCCGGGCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEEcc
Confidence            999999999999999875

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.59  E-value=3.5e-07  Score=57.13  Aligned_cols=75  Identities=19%  Similarity=0.289  Sum_probs=51.8

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-e-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-H-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +..+.+.+|+.+.|.|.+.+..  ...+.|++.. +.   .+ .             ...|+.+.....   ....+|.|
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I   83 (117)
T 2yc1_A            7 SGGGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDA---KKTLSLQM   83 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCC---CCEEEEEE
Confidence            4457789999999999997643  4679998752 11   11 1             023555543210   11247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           84 NSLRAEDTAVYYCARGGV  101 (117)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEEeC
Confidence            999999999999999875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.58  E-value=1.9e-07  Score=66.00  Aligned_cols=92  Identities=18%  Similarity=0.198  Sum_probs=57.3

Q ss_pred             cCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+..+.+.+|+.+.|.|.+.+. |.+.+.|++.. +..+.            ...|+.+......   ....|.|.+++.
T Consensus       142 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~  218 (259)
T 3omz_A          142 AQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAA---KSVALTISALQL  218 (259)
T ss_dssp             CCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGG---TBCCEEESSCCG
T ss_pred             eCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcC---CEEEEEECCCCh
Confidence            3455678899999999999875 78899999852 11110            0134433321110   113599999999


Q ss_pred             CCCeEEEEEEEcCCCc---e--EEEEEEEEeccC
Q psy16261         71 SDFGTYKCNAKNTLGG---S--EGVIKVYNIGYF   99 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g~---~--~~~~~l~v~~~~   99 (158)
                      +|+|.|.|.+.+..+.   .  -..+.|.|....
T Consensus       219 ~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~  252 (259)
T 3omz_A          219 EDSAKYFCALGESLTRADKLIFGKGTRVTVEPRS  252 (259)
T ss_dssp             GGCSEEEEEEESCSSTTCCCEECCCEEEEEEC--
T ss_pred             hHCEEEEEEEeCccCCCCceEECCCCEEEEeeCc
Confidence            9999999999853211   1  123566666543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.58  E-value=3.4e-08  Score=67.76  Aligned_cols=56  Identities=20%  Similarity=0.384  Sum_probs=43.9

Q ss_pred             ecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         12 RLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+|+.+.|.|.+   |.+.+.|+|+ +..+....    ...        ..|.|.+++.+|+|.|+|.+.+.
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~-g~~l~~~~----~~~--------~~L~i~~v~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKD-GKMIGFLT----EDK--------KKWNLGSNAKDPRGMYQCKGSQN   71 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEET-TEEEEEEE----SSC--------CCEEEEEGGGCCEEEEEEESSSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEEC-CEECCCCC----CCC--------CeEEeCCCCcCCCEEEEEEecCC
Confidence            479999999999   7889999999 76654210    011        26999999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	8e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	7e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	9e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	7e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.003

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.2 bits (132), Expect = 2e-11
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
             P ++I  +    +T+ C V   P P   W+H        G R  +            
Sbjct: 6  EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK--PLSGGRATVTD---------S 54

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           L I  +   D G Y C A N  G       V
Sbjct: 55 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-10
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+   +    R    + L   V         W      +          +      +   
Sbjct: 3  IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS------ENGS 56

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
          +L I +  +   G Y    +N LG  +  + +
Sbjct: 57 KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-10
 Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 5/90 (5%)

Query: 4  IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
          +  +L     A  +   C     P P   W         E                   L
Sbjct: 10 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS-----L 64

Query: 64 YIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           + S+  SD G Y C  +N  G       +
Sbjct: 65 IMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 3e-10
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
             + C V S   P   W H+            +  +          L I  + K+D GT
Sbjct: 18 DAVIVCDVVSSLPPTIIWKHKGR-------DVILKKDVRFIVLSNNYLQIRGIKKTDEGT 70

Query: 76 YKCNAKNTLGGSEGVIKV 93
          Y+C  +    G      +
Sbjct: 71 YRCEGRILARGEINFKDI 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM---RLYIGSLSKSD 72
             L C       P  +   ++G  +             SS+        L    ++  D
Sbjct: 19 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 78

Query: 73 FGTYKCNAKNTLG 85
           G Y C A+N  G
Sbjct: 79 SGEYYCQAQNGYG 91

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
          A L   +TL C  + +P+P   WT +               EK         L I ++ K
Sbjct: 17 ANLGQSVTLVCDADGFPEPTMSWTKDG----EPIENEEEDDEKHIFSDDSSELTIRNVDK 72

Query: 71 SDFGTYKCNAKNTLGGSEGVIKV 93
          +D   Y C A+N  G  +  I +
Sbjct: 73 NDEAEYVCIAENKAGEQDASIHL 95

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 4e-09
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+   + +           C  +  P P   W  +   L          T+  S+++   
Sbjct: 2  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS- 60

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
               S+  SD G Y    +N+ G  E    +
Sbjct: 61 -----SVQASDEGNYSVVVENSEGKQEAEFTL 87

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 9e-09
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           ++                C V +   P+  W         +                  
Sbjct: 4  FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK------DDRELKQSVKYMKRYNGNDY 57

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           L I  +   D G Y   AKN+ G  E ++ +
Sbjct: 58 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 12/86 (13%), Positives = 20/86 (23%), Gaps = 8/86 (9%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
            +   ++ +     +TL C         T                              
Sbjct: 9  QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--------GR 60

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
          RL + S+   D G Y C       G+
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAGRPAGT 86

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 18/84 (21%), Gaps = 5/84 (5%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I    Q       +       V   P P   W      +      Y  W E         
Sbjct: 7  IFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIR 66

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
                ++  D  +    A N  G
Sbjct: 67 D-----VTGEDSASIMVKAINIAG 85

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-08
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM--WTEKFSSYKFYMRLYIGSLSKSDF 73
             L C  +    P  +   ++G ++    +         +        L    LS SD 
Sbjct: 19 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 78

Query: 74 GTYKCNAKNTLGGSE 88
          G Y C A+N  G   
Sbjct: 79 GEYSCEARNGYGTPM 93

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-08
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 1/77 (1%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY-MRLYIGSLSKSDFGTY 76
           +   V+  P P   W      L      +  + E  ++       L +   +  + G Y
Sbjct: 19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78

Query: 77 KCNAKNTLGGSEGVIKV 93
             A N  G +   I  
Sbjct: 79 TLLAANPFGQASASIMA 95

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-08
 Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 23/101 (22%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTE----------------------- 52
            L LD  +   P P   W           +R                             
Sbjct: 26  KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 85

Query: 53  KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           +  + K      +    K D G Y    KN +G  +  + V
Sbjct: 86  RVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
          P+ L+C VE   +P   W  +                  S   +   L + S+ +SD G 
Sbjct: 13 PVKLNCSVEGMEEPDIQWVKDG----AVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68

Query: 76 YKCNAKNTLG 85
          Y C  ++   
Sbjct: 69 YWCQVEDGGE 78

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.2 bits (106), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
                   A     +TL+C     P P   W                 ++         
Sbjct: 8  KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK------------LDGSQTSKWLSSEP 55

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           L+I ++   D GTY+C A+N  G      ++
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-07
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 16  PLTLDCHVESYPKPITFWTHE---NGSLIHEGSRYHMWTE----KFSSYKFYMRLYIGSL 68
            +   C V S  +P   W      NGS        ++         ++ K    LYI ++
Sbjct: 22  DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 81

Query: 69  SKSDFGTYKCNAKNTLGGSEGVIKVY 94
           +  D G Y C A N++G S     + 
Sbjct: 82  TFEDAGEYTCLAGNSIGISFHSAWLT 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-07
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYH------MWTEKF 54
           ++   ++ +   L + + L C+V      I +W      +  +                 
Sbjct: 4   IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 63

Query: 55  SSYKFYMRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKV 93
                   L I  +    +   + C AKNT G     I++
Sbjct: 64  RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          I+  S+ I  +      L+      P P   WT        +            +     
Sbjct: 5  ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV------GDSGAALAPELLVDAKSSTT 58

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           ++  S  ++D G YK   KN LG  E + +V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.1 bits (103), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 10/78 (12%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           L   C     P+P   W                   +         L    L   D G 
Sbjct: 18 DLRWSCVASGKPRPAVRWLR----------DGQPLASQNRIEVSGGELRFSKLVLEDSGM 67

Query: 76 YKCNAKNTLGGSEGVIKV 93
          Y+C A+N  G      ++
Sbjct: 68 YQCVAENKHGTVYASAEL 85

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-07
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 16 PLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
          P  L+C V+    +P   W   NG+   +        ++  +  F++  +   +  +D G
Sbjct: 20 PFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFIL-HFEPVLPNDNG 78

Query: 75 TYKCNAKNTLG 85
          +Y+C+A     
Sbjct: 79 SYRCSANFQSN 89

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 5e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
           +   V+  PKP   W + NG++++E           +  +++  L + + +  + G Y 
Sbjct: 20 CIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78

Query: 78 CNAKNTLGGSEGVIKV 93
            AKN  G  E  I  
Sbjct: 79 LIAKNEYGKDEKQISA 94

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.0 bits (100), Expect = 8e-07
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 7/70 (10%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           +TL C   + P     W      L       +              +    +   D G+
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-------AGDLVISNPVKAKDAGS 76

Query: 76 YKCNAKNTLG 85
          Y+C A N  G
Sbjct: 77 YQCVATNARG 86

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
              DC VE YP P   W  ++  +         + E+ +       +        D   
Sbjct: 25 AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV-----CGDDDAK 79

Query: 76 YKCNAKNTLGGSEGVIKV 93
          Y C A N+LG +    ++
Sbjct: 80 YTCKAVNSLGEATCTAEL 97

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-06
 Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 5/85 (5%)

Query: 1  MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
          M+    +   A     + L+C V S       W         E         +       
Sbjct: 2  MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNG----EEIIPGPKSRYRIRVEGKK 56

Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
            L I   +K+D   Y         
Sbjct: 57 HILIIEGATKADAAEYSVMTTGGQS 81

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.0 bits (92), Expect = 8e-06
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          +      +  R   P  L+C +E   + + +   ++G   +               K   
Sbjct: 5  LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL------RKDEG 58

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
           L       SD G Y+C A+   G
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAG 82

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 4  IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
            S+ + A+      + C   S P     +      +            + S      RL
Sbjct: 8  YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK----RL 63

Query: 64 YIGSLSKSDFGTYKCNAKNTLGGSE 88
             +    D G Y C   N +G  +
Sbjct: 64 LFKTTLPEDEGVYTCEVDNGVGKPQ 88

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
            T  C              +   +     +        SS +F     + + +K D G 
Sbjct: 18 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV---TSSRRFIASFNVVNTTKRDAGK 74

Query: 76 YKCNAKNTLG 85
          Y+C  +   G
Sbjct: 75 YRCMIRTEGG 84

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 17/109 (15%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKP-----------------ITFWTHENGSLIHEG 44
           ++ P   I A +     L C +                       +     +  +     
Sbjct: 5   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 45  SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            R      K S  +  + L I ++  SD G Y C  ++     E  +++
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
           ++  V   P P   W H         S+                L     +  + G Y 
Sbjct: 21 CIEFVVRGNPPPTLHWLH--NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 78

Query: 78 CNAKNTLGGSEGVIKV 93
            AKN LG +   I  
Sbjct: 79 LIAKNPLGTANQTING 94

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYPKP----ITFWTHENGSLIHEGSRYHMWTEKF-- 54
           + +   Q    ++   +T    V++        I ++  +   L  +  ++    E F  
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 55  SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
            S  +   + I     +  G Y+C              +
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 100

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 5e-05
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
           V   +    R  A +T  C  +S     T       +                      
Sbjct: 5  TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---------- 54

Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
           L I ++  SD GTY C   N     +G   ++
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
           + L   + +       W      +   GS+Y   +           L I   S +D   
Sbjct: 23 KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAA 76

Query: 76 YKCNAKN 82
          Y+C    
Sbjct: 77 YQCVVGG 83

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 6e-05
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 6  SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--- 62
          SQ I   +   +T         K + +   ++     E S +  ++   +          
Sbjct: 2  SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
          L I +L+ SD   Y+  + N     +  + V
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-05
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY- 60
           +      +      P+ L C    +  P   W  + G         +  T  +     + 
Sbjct: 7   VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66

Query: 61  -MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
              +   S+++ D GTY C      G S G +KV
Sbjct: 67  PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 9e-05
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 2   IVIPSQLIGARLAAPLTLDCHVESYPKPITFWT-HENGSLIHEGSRYHMWTEKFSSYKFY 60
           I+  +Q   A       + C + S P P       +   L    S  +      +     
Sbjct: 9   IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 68

Query: 61  MRLYIGSLSKS-DFGTYKCNAKNTLGGSEGVIKV 93
             L I ++ ++     Y C A N+ G    +I++
Sbjct: 69  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 102

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS------LIHEGSRYHMWTEKFS 55
          +                L C  ES P    +  ++         +    SR+ + + +  
Sbjct: 5  VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR 64

Query: 56 SYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
          S      L + +      G Y+CN  ++ G  + +I +
Sbjct: 65 SELHIENLNMEADP----GQYRCNGTSSKGSDQAIITL 98

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 1   MIVIPSQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLIHEGSRYHMW---TEKF 54
           + V+  Q     +   +T    V        P+  W       +      H+    +   
Sbjct: 6   LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65

Query: 55  SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
           +S  +   L+I     +  G Y+C              +
Sbjct: 66  ASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL 104

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 5/90 (5%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVE-SYPKPITFWT-HENGSLIHEGSRYHMWTEKFSSYKF 59
          +++  Q     +    T++C V    P              +H  +         +  + 
Sbjct: 5  VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA---PAPQEA 61

Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89
                 +  +     + C A   L    G
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMSRGG 91

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 16  PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDF 73
           P  LDC + +          +  S     +    +  + ++          +     SD 
Sbjct: 19  PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 78

Query: 74  GTYKCNAKNTLGGSEGVIKVYNI 96
             Y C AKN     E V+  Y I
Sbjct: 79  YKYVCTAKNAAVDEEVVLVEYEI 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 3e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          +      +       + L C    +  P   W    GS           T  ++    + 
Sbjct: 4  VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 62 R--LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
             +   S+++ D G Y C      G + G + +
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 7e-04
 Identities = 8/82 (9%), Positives = 16/82 (19%), Gaps = 7/82 (8%)

Query: 2  IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
          +  P   +   +      +  + S P     W                   +        
Sbjct: 4  VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKL------KGQPLTASPDCEIIEDGKKH 56

Query: 62 RLYIGSLSKSDFGTYKCNAKNT 83
           L + +      G     A N 
Sbjct: 57 ILILHNCQLGMTGEVSFQAANA 78

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 7/79 (8%)

Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
               C +  +  K    W  ++        +     +          L+       D G
Sbjct: 19 IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK------LWFVPAKVEDSG 72

Query: 75 TYKCNAKNTLGGSEGVIKV 93
           Y C  +N+       I  
Sbjct: 73 HYYCVVRNSSYCLRIKISA 91

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLS 69
             L  P       E+   P   W  +   L+ +   +    ++         L + +++
Sbjct: 16 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---------LIVMNVA 66

Query: 70 KSDFGTYKCNAKNTLGGSEGVIKV 93
          +   G Y C+A  T  G +  I  
Sbjct: 67 EKHRGNYTCHASYTYLGKQYPITR 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.78
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.77
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.77
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.75
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.71
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.71
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.69
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.69
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.69
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.68
d2avga1	110	Cardiac myosin binding protein C, different domain	99.68
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.68
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.66
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.64
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.63
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.63
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.63
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.62
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.62
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.62
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.61
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.61
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.58
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.57
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.57
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.55
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.55
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.54
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.54
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.53
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.51
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.49
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.47
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.47
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.43
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.43
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.35
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.33
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.23
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.2
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.16
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.05
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.93
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.91
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.69
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.68
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.67
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.67
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.67
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.65
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.63
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.62
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.62
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.62
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.61
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.6
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.59
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.58
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.57
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.57
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.56
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.55
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.53
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.53
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.53
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.52
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.52
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.5
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.5
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.49
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.48
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.47
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.46
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.45
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.45
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.44
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.43
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.42
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.42
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.4
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.36
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.36
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.33
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.31
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.31
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.31
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.3
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.3
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.3
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.29
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.29
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.29
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.29
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.28
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.27
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.26
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.25
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.24
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.24
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.22
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.22
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.19
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.18
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.13
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.12
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.12
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.11
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.09
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.03
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.02
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.02
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.0
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.99
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.98
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.97
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.96
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.96
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.93
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.92
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.9
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.88
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.87
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.86
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.84
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.83
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.82
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.82
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.8
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.77
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.74
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.72
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.71
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.68
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.67
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.65
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.62
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.6
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.57
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.57
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.49
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.49
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.48
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.46
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.42
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.42
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.4
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.37
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.36
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.34
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.33
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.3
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.29
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.27
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.27
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.25
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.2
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.2
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.2
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.18
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.16
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.13
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.12
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.12
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.11
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.1
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.09
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.09
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.09
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.09
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.07
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.06
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.05
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.05
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.04
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.03
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.98
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.94
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.84
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.84
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.81
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.7
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.42
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.36
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.36
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.34
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.3
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.67
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.55
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	94.85
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.74
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	94.3
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	92.99
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	92.91
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	92.82
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	92.6
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	91.67
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	91.63
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	91.36
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	89.25
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	88.25
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	87.96
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	87.85
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	87.71
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	86.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	86.09
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	85.48
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	85.2
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	85.14
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	84.98
d1gxea_	130	Cardiac myosin binding protein C, different domain	84.71
d2avga1	110	Cardiac myosin binding protein C, different domain	84.5
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	83.75
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	83.65
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	83.19
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	83.01
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	82.86
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	82.72
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	81.26
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	80.71

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.9e-19  Score=107.25  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.++..+|+|.|+|.|.|.
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-~~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVENSE-----NGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSSSEEEEECS-----SEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeC-ceeeccCCcEEEEEec-----ceeEEEEeeCCcccCEEEEEEEEEC
Confidence            356677899999999999999999999999999 8888877788776544     1347999999999999999999999


Q ss_pred             CCceEEEEEEEEeccCCCC
Q psy16261         84 LGGSEGVIKVYNIGYFGSD  102 (158)
Q Consensus        84 ~g~~~~~~~l~v~~~~~~~  102 (158)
                      .|...+.+.|.|.+.|..|
T Consensus        79 ~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          79 LGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             SCEEECCEEEEEECSCSCC
T ss_pred             CCEEEEEEEEEEEecCCCc
Confidence            9999999999999877544

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=2.5e-18  Score=102.62  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=72.9

Q ss_pred             ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.+..|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+.. .        .|.|.++..+|.|.|+|.|.|.
T Consensus         6 ~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~~~-~--------~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           6 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSG-G--------ELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             ECCCCEEEETTCCEEEECEEEEESCCEEEEEET-TEECCCCSSEEEET-T--------EEEESSCCGGGCEEEEEEEEET
T ss_pred             EECCCEEECCCCcEEEEEEEEEEcCCEEEEEEe-eccccccceeeeee-e--------eEEEEeecccCCEEEEEEEEeC
Confidence            456667899999999999999999999999999 88888777776643 2        6999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy16261         84 LGGSEGVIKVYNI   96 (158)
Q Consensus        84 ~g~~~~~~~l~v~   96 (158)
                      .|.......|.|.
T Consensus        76 ~G~~~~~~~l~V~   88 (89)
T d1cs6a4          76 HGTVYASAELTVQ   88 (89)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999888888875

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.77  E-value=6.3e-18  Score=102.58  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..+.++......++    .+.|.|.++...|.|.|+|.|.|
T Consensus         8 ~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           8 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDN----VCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETT----EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeC-ceEEeeeeeeEEEeccce----EEEEEeccCccccCEEEEEEEEE
Confidence            3456677899999999999999999999999999 888877766555443322    24799999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy16261         83 TLGGSEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~   97 (158)
                      ..|...+...|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998865

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.77  E-value=5.8e-18  Score=103.48  Aligned_cols=90  Identities=20%  Similarity=0.366  Sum_probs=77.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..+.++.+.....+    .++|.|.++...|.|.|+|.|.|
T Consensus        12 ~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_          12 TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDEEG----NCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEECTTC----EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EcCCCcEEEecCCcEEEEEEEEeccCCeEEEEee-eccccceeeEeEEEecCc----eeeeEecCCCHHhCEEEEEEEEE
Confidence            3456678899999999999999999999999999 888888877776654422    34799999999999999999999


Q ss_pred             CCCceEEEEEEEEec
Q psy16261         83 TLGGSEGVIKVYNIG   97 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~   97 (158)
                      ..|...+.+.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999988764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=9e-19  Score=106.21  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..+.++.+....     ..+.|.|.++...|+|.|+|.|.|
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-~~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           5 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRYNG-----NDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             EECCCCCEEETTSCEEEEEEEECSSCCEEEEEET-TEECCSBTTBBCCCST-----TEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             EEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEe-eeccceeeEEEEEecC-----CeeEEEeCCCceecCEEEEEEEEE
Confidence            4567777899999999999999999999999999 8888776666554333     134799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccC
Q psy16261         83 TLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~   99 (158)
                      ..|.....+.|.|...+
T Consensus        79 ~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          79 SYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             TTEEEEEEECCEEECSC
T ss_pred             CCCEEEEEEEEEEeecC
Confidence            99999988888887653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=2.2e-18  Score=103.70  Aligned_cols=88  Identities=22%  Similarity=0.290  Sum_probs=74.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..+.++......     ..+.|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAKS-----STTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCCCCEEEECSSBCCEEEEEEECCSSCEEEEECS-SSSCBCSTTSEEEEET-----TEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             EeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEee-eeeceeeeeeeecccc-----cceeeccccccccccEEEEEEEEE
Confidence            3466778899999999999999999999999999 7777776666555544     134799999999999999999999


Q ss_pred             CCCceEEEEEEEEe
Q psy16261         83 TLGGSEGVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~~~~l~v~   96 (158)
                      ..|..++.+.|.|.
T Consensus        80 ~~G~~~~~~~l~V~   93 (93)
T d1wiua_          80 ELGEDEAIFEVIVQ   93 (93)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEC
Confidence            99999998888763

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.75  E-value=8.5e-18  Score=100.30  Aligned_cols=80  Identities=25%  Similarity=0.424  Sum_probs=67.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ++..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. .++.+...         .|.|.++...|+|.|+|.|.|..
T Consensus         9 p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-~~~i~~-~~~~~~~~---------~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1biha4           9 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN-AKPLSG-GRATVTDS---------GLVIKGVKNGDKGYYGCRATNEH   77 (89)
T ss_dssp             CCSEEEECTTSCEEEECEEEEESCCCCEEEET-TEECCS-SSEEEETT---------EEEESSCCSTTCEEEEEEEEETT
T ss_pred             CCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeC-CccCcc-ccEEEeee---------eEEECCCChhhCEEEEEEEEECC
Confidence            44556788999999999999999999999999 877754 34544322         59999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy16261         85 GGSEGVIKVYN   95 (158)
Q Consensus        85 g~~~~~~~l~v   95 (158)
                      |.....+.|.|
T Consensus        78 G~~~~~~~l~V   88 (89)
T d1biha4          78 GDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888888876

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=1e-18  Score=104.77  Aligned_cols=88  Identities=19%  Similarity=0.341  Sum_probs=74.9

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...|+.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....     ..+.|.|.++...|+|.|+|.|.|
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESS-SSTTCSSSSCEEEECS-----SEEEEECSSCCSCCCEEEEEECBC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEe-ecccccccceeeeeec-----ceeEEeecCCCHHHCEEEEEEEEE
Confidence            3467788899999999999999999999999999 7877777666655444     235799999999999999999999


Q ss_pred             CCCceEEEEEEEEe
Q psy16261         83 TLGGSEGVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~~~~l~v~   96 (158)
                      ..|.....+.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1tnna_          77 SEGKQEAEFTLTIQ   90 (91)
T ss_dssp             SSCBCCEEEEEECC
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999888888764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.7e-17  Score=96.31  Aligned_cols=88  Identities=17%  Similarity=0.308  Sum_probs=71.5

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .|..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+..+....   ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEe-ecccccceeeeeeecc---cCceeeEEECCCCcccCEEEEEEEEECC
Confidence            46778899999999999999999999999999 8887766555444332   1234579999999999999999999999


Q ss_pred             Cce-EEEEEEEEe
Q psy16261         85 GGS-EGVIKVYNI   96 (158)
Q Consensus        85 g~~-~~~~~l~v~   96 (158)
                      |.. +..+.|.|.
T Consensus        78 G~~~S~~~~l~V~   90 (91)
T d1rhfa1          78 ETEISQPVWLTVE   90 (91)
T ss_dssp             TCEECCCEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            975 456777765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.71  E-value=2.2e-17  Score=100.00  Aligned_cols=83  Identities=20%  Similarity=0.348  Sum_probs=66.4

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.......+.    ++|.|.++..+|+|.|+|.|.|..|..
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kn-g~~l~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSI   88 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEET-TEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEEC-CEeccccCceeeEEEcCCc----EEEEECCCCcccCEEEEEEEEECCCEE
Confidence            35678999999999999999999999999 8877654332211111111    279999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy16261         88 EGVIKVYN   95 (158)
Q Consensus        88 ~~~~~l~v   95 (158)
                      ...+.|.|
T Consensus        89 ~~~~~l~V   96 (97)
T d3dara1          89 NHTYHLDV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.3e-16  Score=94.65  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPK-PITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      |.+.|....+..|+.+.|.|.+.|.|. |.+.|+++++..+.. ..++.......    ..++|.|.+++.+|+|.|+|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~   78 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD----DSSTLTIYNANIDDAGIYKCV   78 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET----TEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecC----cceEEEcccCchhhceEEEEE
Confidence            567788888999999999999999985 799999964665543 45666554431    134799999999999999999


Q ss_pred             EEcCCCce-EEEEEEEE
Q psy16261         80 AKNTLGGS-EGVIKVYN   95 (158)
Q Consensus        80 a~n~~g~~-~~~~~l~v   95 (158)
                      |.|..|.. .+.+.|.|
T Consensus        79 a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          79 VTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EEETTTEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEE
Confidence            99999975 45566665

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.8e-16  Score=97.47  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             ecCceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCeeee--cCCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLIH--EGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      ..|+.+.+.+|+++.|.|.+.|.|   .|.+.|+|++...+.  ...++....... ......+.|.|.+++..|+|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            467788899999999999999998   579999998333222  223443333221 23334567999999999999999


Q ss_pred             EEEEcCCCceEEEEEEEEeccCCC
Q psy16261         78 CNAKNTLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~~~~~~  101 (158)
                      |.|.|..|..++.+.|.|...+..
T Consensus        85 C~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEEeCCCEEEEEEEEEEEcCCCc
Confidence            999999999999999998765533

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=94.36  Aligned_cols=81  Identities=17%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |+..+.. .+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..       ...        .|.|.++..+|+|.|+|.|.
T Consensus         3 it~~~~~-~v~~G~~~~L~C~~~g~p~P~i~W~~~-~~~~~~-------~~~--------~l~i~~v~~~DsG~Y~C~a~   65 (84)
T d2nxyb2           3 LTANSDT-HLLQGQSLTLTLESPPGSSPSVQCRSP-RGKNIQ-------GGK--------TLSVSQLELQDSGTWTCTVL   65 (84)
T ss_dssp             EEESCSS-CEETTCCEEEEEECCTTCCCEEEEECT-TCCEEE-------ESS--------EEEESSCCGGGCEEEEEEEE
T ss_pred             EcCCCCe-EEECCCeEEEEEEeEcCCchheEEEee-ccccee-------eee--------eeeeeecccccccEEEEEEE
Confidence            3445543 588999999999999999999999998 433221       112        59999999999999999999


Q ss_pred             cCCCceEEEEEEEEeccC
Q psy16261         82 NTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        82 n~~g~~~~~~~l~v~~~~   99 (158)
                      |..|.....+.|.|...+
T Consensus        66 N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          66 QNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             ETTEEEEEEEEECEECCC
T ss_pred             eCCCEEEEEEEEEEEecC
Confidence            999999999998887643

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.7e-16  Score=94.71  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      |+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...... ..  .     ..+.|.|.++..+|+|.|+|.|.|..
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~-~~--~-----~~~~L~I~~v~~~d~G~Y~C~a~N~~   77 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQ-IDSPLNGKVT-NE--G-----TTSTLTMNPVSFGNEHSYLCTATCES   77 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEET-TCCCCSSEEE-EE--T-----TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCceEEEEec-Cccceeeeee-ee--c-----CCcEEEEecccccccceEEEEEEeCC
Confidence            34556677899999999999999999999988 4443322211 11  1     12479999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                      |..+..+.|.|.
T Consensus        78 g~~~~~~~v~V~   89 (90)
T d1vcaa2          78 RKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999988888764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3e-16  Score=95.88  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261         13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK   92 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   92 (158)
                      .++...+.|.+.|.|.|.+.|+++ +..+..+.+..............+.|.|.+++..|+|.|+|.|+|.+|..+..+.
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEEC-CEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            466678999999999999999999 8888877666554443333344568999999999999999999999999999999


Q ss_pred             EEEeccCC
Q psy16261         93 VYNIGYFG  100 (158)
Q Consensus        93 l~v~~~~~  100 (158)
                      |.|...|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            98877653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-15  Score=93.93  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCeeeec--CCeEEEEEee-cccceEEEEEEEcCCCCCCCeE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLIHE--GSRYHMWTEK-FSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +...|+.+.+.+|+++.|.|.+.|.|   .|.+.|++++...+..  ..++...... .......+.|.|.+++..|+|.
T Consensus         7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1           7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             eEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            34457778899999999999999998   5789999983222222  2333333222 1233345689999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy16261         76 YKCNAKNTLGGSEGVIKVYNIG   97 (158)
Q Consensus        76 Y~C~a~n~~g~~~~~~~l~v~~   97 (158)
                      |+|.|.|..|..++.+.|.|..
T Consensus        87 Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          87 YRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999998875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=97.46  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=73.1

Q ss_pred             ecCceEEEecCCC---EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          4 IPSQLIGARLAAP---LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         4 ~~~~~~~~~~g~~---v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      .||..+...+++.   ..|.|.+.|.|.|.+.|+++ +..+..+.++...... +.....+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~PP~i~~~~~~~~~~~~~i~~~v~G~P~P~v~W~~n-~~~i~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (105)
T d1wwca_           4 YPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNYTLIA   81 (105)
T ss_dssp             CCCCCCCCCCCCCCCEEEEEEEEECSSCCEEEEEET-TEECCCSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEE
T ss_pred             cCCeeEEeCCCEEEEEEEEEEEEEEeCCCeEEEEeC-ccccCCCcceeeeEEe-ecccceEEEEEeecccccceEEEEEE
Confidence            3444444444444   44677899999999999999 8888777665544333 23344568999999999999999999


Q ss_pred             EcCCCceEEEEEEEEeccCCC
Q psy16261         81 KNTLGGSEGVIKVYNIGYFGS  101 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v~~~~~~  101 (158)
                      .|..|..+..+.|.|...|.+
T Consensus        82 ~N~~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          82 KNPLGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             EETTEEEEEEEEECCSCCCCC
T ss_pred             EcCCCEEEEEEEEEEEeCCCC
Confidence            999999999999988776543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.5e-16  Score=95.18  Aligned_cols=80  Identities=25%  Similarity=0.270  Sum_probs=65.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.+.+|+.+.|.|.+.|.|.|.+.|+++++......    ....        +.|.|.++..+|+|.|+|.|.|..
T Consensus        11 ~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1cs6a3          11 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----LSSE--------PLLHIQNVDFEDEGTYECEAENIK   78 (91)
T ss_dssp             CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----SBSS--------SEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----eeee--------eEEEeCCCCccCCEEEEEEEEECC
Confidence            4677889999999999999999999999999844322111    1111        269999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                      |.....+.|.|.
T Consensus        79 G~~~~~~~l~V~   90 (91)
T d1cs6a3          79 GRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999888888774

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=2.6e-16  Score=95.16  Aligned_cols=87  Identities=18%  Similarity=0.228  Sum_probs=67.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.......+.......   .++|.|.+++.+|+|.|+|.|.|.+
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~-g~~i~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~   84 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPEDRITRHNRTS---GKRLLFKTTLPEDEGVYTCEVDNGV   84 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEET-TEECCCCTTSSEESCSSST---TSEEEESSCCGGGCEEEEEEECCSS
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEe-eeeccccceeeeeeeeecC---CCEEEEEeccccccEEEEEEEEECC
Confidence            34567789999999999999999999999999 7777654333232221111   1369999999999999999999999


Q ss_pred             CceE-EEEEEEE
Q psy16261         85 GGSE-GVIKVYN   95 (158)
Q Consensus        85 g~~~-~~~~l~v   95 (158)
                      |... ..+.|.|
T Consensus        85 G~~~s~s~~L~V   96 (97)
T d1biha3          85 GKPQKHSLKLTV   96 (97)
T ss_dssp             SSCEEEEEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            9864 4677776

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=6.5e-16  Score=93.78  Aligned_cols=82  Identities=26%  Similarity=0.453  Sum_probs=64.2

Q ss_pred             EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .+..|+.+.|.|.+.|.|.|.+.|+++ +..+......  ...... .    .+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~-g~~i~~~~~~~~~~~~~~-~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   89 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEKHIFSD-D----SSELTIRNVDKNDEAEYVCIAENKAGEQ   89 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEET-TEECCCC--CCSSEEECT-T----SCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeC-CcccccccccceeEEeec-C----ceEEEeCCCCcccCEEEEEEEEECCCEE
Confidence            346799999999999999999999999 7776543211  111111 1    1379999999999999999999999999


Q ss_pred             EEEEEEEEec
Q psy16261         88 EGVIKVYNIG   97 (158)
Q Consensus        88 ~~~~~l~v~~   97 (158)
                      ...+.|.|..
T Consensus        90 ~~~~~l~V~~   99 (100)
T d1qz1a3          90 DASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            9988888754

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=9.2e-16  Score=91.10  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             cCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .++...+.+|+.+.|.|.+. +.|.|.+.|+++ +..+.....  ....+        .|.|.+++..|+|.|+|.|.|.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~-~~~~~~~~~--~~~~~--------~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRL-HNGKLPSRA--MDFNG--------ILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEG-GGBCCCTTE--EEETT--------EEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecC-Cceeecccc--Eeece--------EEEEecCCcccCEEEEEEEEEC
Confidence            46677899999999999997 578889999999 655544332  22223        6999999999999999999999


Q ss_pred             CCceEEEEEEEEe
Q psy16261         84 LGGSEGVIKVYNI   96 (158)
Q Consensus        84 ~g~~~~~~~l~v~   96 (158)
                      .|.....+.|.|.
T Consensus        77 ~G~~~~~~~l~V~   89 (89)
T d1gl4b_          77 FAMDQGTATLHVQ   89 (89)
T ss_dssp             SCEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999988888763

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=93.38  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             cCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+....+.+|+++.|.|.+.|.| .|.++|+|++........+....... ........|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-EKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEE-CSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEe-cCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            35566789999999999999998 58999999844333322222111111 11122346999999999999999999999


Q ss_pred             CCceE-EEEEEEEec
Q psy16261         84 LGGSE-GVIKVYNIG   97 (158)
Q Consensus        84 ~g~~~-~~~~l~v~~   97 (158)
                      .|... ..+.|.|.+
T Consensus        88 ~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          88 SNLIESHSTTLYVTD  102 (104)
T ss_dssp             TEEEECCCEEEEEEC
T ss_pred             CCeEEEEEEEEEEEE
Confidence            99864 467777754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.8e-16  Score=97.19  Aligned_cols=86  Identities=22%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-----------------------------CCeEEEEEeecc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-----------------------------GSRYHMWTEKFS   55 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-----------------------------~~~~~~~~~~~~   55 (158)
                      .++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+..                             ..++.+....  
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--   91 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKA-ITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK--   91 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEE-CCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET--
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeC-CeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC--
Confidence            34577899999999999999999999999987 332211                             1223333222  


Q ss_pred             cceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261         56 SYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        56 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                         ..+.|.|.++..+|+|.|+|.|.|.+|...+.+.|.|.
T Consensus        92 ---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          92 ---DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             ---TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ---CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence               23579999999999999999999999999999988875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-15  Score=89.54  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             ecCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          4 IPSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .++..+.+.+|+++.|.|.+. |.|.|.+.|++. +..+  .... ...       ..+.|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~-~~~~--~~~~-~~~-------~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1           8 PPEPVVAVALGASRQLTCRLACADRGASVQWRGL-DTSL--GAVQ-SDT-------GRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             SCCSEEEEETTCCEEEEEEECCSSTTCEEEEESS-TTTT--CCEE-EES-------SEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEe-eeee--eeee-ccC-------ceeeEEcCccChhhCCcEEEEEEe
Confidence            344567788999999999885 789999999988 4433  1111 111       124799999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy16261         83 TLGGSEGVIKVYN   95 (158)
Q Consensus        83 ~~g~~~~~~~l~v   95 (158)
                      ..|..+.++.|.|
T Consensus        77 ~~g~~~~s~~l~V   89 (90)
T d1gsma1          77 GGRTFQHTVQLLV   89 (90)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999888888876

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.63  E-value=2.5e-15  Score=92.35  Aligned_cols=90  Identities=19%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee----cCC--eEEEEEee--cccceEEEEEEEcCCCCCCCeEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH----EGS--RYHMWTEK--FSSYKFYMRLYIGSLSKSDFGTY   76 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~----~~~--~~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~Y   76 (158)
                      .|+.+.+.+|+++.|.|.+.|.|.|.+.|+++ +....    ...  ........  .......+.|.|.++..+|+|.|
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   89 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY   89 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEEE-C-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEec-CccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEE
Confidence            36778899999999999999999999999987 43211    111  11111000  01112345799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy16261         77 KCNAKNTLGGSEGVIKVYN   95 (158)
Q Consensus        77 ~C~a~n~~g~~~~~~~l~v   95 (158)
                      +|.|.|..|...+.+.|.|
T Consensus        90 ~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          90 TCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999998888876

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=6.8e-16  Score=92.38  Aligned_cols=84  Identities=20%  Similarity=0.325  Sum_probs=66.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...|+...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....  ++.....+        .|.|.+++..|+|.|+|.|
T Consensus         5 ~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~-~~~i~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2           5 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDVRFIVLSNN--------YLQIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             EECCSSEECCTTSCEEECCEEECSSCCEEEEEET-TEEGGGGCCTTEEECTTS--------CEEETTCCGGGCEEEEEEE
T ss_pred             EEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEc-Ccccccccceeeeeeeee--------eEEECCCCHHhCEEEEEEE
Confidence            3457778899999999999999999999999999 76665443  33332222        5999999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy16261         81 KNTLGGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v   95 (158)
                      .|..+.......|.|
T Consensus        76 ~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          76 RILARGEINFKDIQV   90 (92)
T ss_dssp             EEGGGTEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEE
Confidence            998877766555554

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=89.85  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +...|+...+.+|+.+.|.|.+.|.|.| .+.|+++ +..+.....      .        .+.|......|+|.|+|.|
T Consensus         4 f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~-g~~i~~~~~------~--------~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           4 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG-TTKIGGPAP------S--------PSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEET-TEECSCSEE------S--------SEEEEECCCSSCEEEEEEE
T ss_pred             EEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEEC-CEECCCCCC------c--------ceEEecCCccccEEEEEEE
Confidence            4567788889999999999999999998 8999999 776644321      1        2455556667999999999


Q ss_pred             EcCCCce-EEEEEEEE
Q psy16261         81 KNTLGGS-EGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~-~~~~~l~v   95 (158)
                      .|.+|.. +..++|.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999965 34566655

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-15  Score=90.12  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCe---eeec--CCeEEEEEeecccceEEEEEEEcCCC-CCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGS---LIHE--GSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G   74 (158)
                      |...+....+.+|+.+.|.|.+.|.|.| .+.|++++..   .+..  ..++.+....     ..+.|.|.++. ..|+|
T Consensus         5 i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           5 VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEADPG   79 (101)
T ss_dssp             CEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTSSE
T ss_pred             EEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC-----CEEEEEEeccccccCCE
Confidence            4456677789999999999999999988 7999987221   1111  2345454433     13479999998 57999


Q ss_pred             EEEEEEEcCCCceEEEEEEEEe
Q psy16261         75 TYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        75 ~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                      .|+|.|.|.+|.....+.|.|.
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999988888773

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=93.16  Aligned_cols=74  Identities=18%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .++.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...                  +.+.+++++|+|.|.|.|.|..
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~-g~~~~~~------------------~~~~~v~~~d~G~Y~C~A~N~~   70 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPI------------------GESVTVTRDLEGTYLCRARSTQ   70 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEET-TTEECCT------------------TSCEECCGGGCEEEEEEEEETT
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEe-eccceee------------------eeeeccccCCCCEEEEEEEcCC
Confidence            35677889999999999999999999999999 5544322                  2334678899999999999999


Q ss_pred             CceEEEEEEEEec
Q psy16261         85 GGSEGVIKVYNIG   97 (158)
Q Consensus        85 g~~~~~~~l~v~~   97 (158)
                      |..+..+.|.|..
T Consensus        71 G~~~~~~~l~V~~   83 (84)
T d2oz4a3          71 GEVTREVTVNVLS   83 (84)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEC
Confidence            9998888888864

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=93.01  Aligned_cols=91  Identities=18%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             eEEEecCCCEEE---EeEEeecCCCeeEEEcCCCeeeecCCeEEEEEe--ecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          8 LIGARLAAPLTL---DCHVESYPKPITFWTHENGSLIHEGSRYHMWTE--KFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         8 ~~~~~~g~~v~l---~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+.+..|....+   .|.+.|.|.|.+.|+++ +..+..+.+......  ........+.|.|.++...|+|.|+|.|.|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~n-g~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEET-TEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEe-eeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            344445555554   45899999999999999 888876654433322  223344567899999999999999999999


Q ss_pred             CCCceEEEEEEEEeccC
Q psy16261         83 TLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~   99 (158)
                      .+|...+.+.|.+...|
T Consensus        85 ~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          85 PFGQASASIMAAFMDNP  101 (107)
T ss_dssp             TTEEEEEEEEECCCSCT
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999887765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.4e-15  Score=90.63  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=66.3

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEE---Ee----ecccceEEEEEEEcCCCCCCCe-EEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMW---TE----KFSSYKFYMRLYIGSLSKSDFG-TYKC   78 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~l~i~~v~~~d~G-~Y~C   78 (158)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.........   ..    ........+.|.|.+++.+|.| .|+|
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWN-GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEET-TEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEEC-CcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            446677899999999999999999999999 7766544221111   10    0022334568999999999999 5999


Q ss_pred             EEEcCCCceEEEEEEE
Q psy16261         79 NAKNTLGGSEGVIKVY   94 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~   94 (158)
                      .|.|.+|..++.+.|.
T Consensus        89 ~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          89 FAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEECSSCEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEE
Confidence            9999999998888875

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.2e-17  Score=96.99  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=64.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a   80 (158)
                      |...+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+...       ....+.|.|.+++.+|.| .|+|.|
T Consensus         5 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           5 LKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILT-ELEQSATVMKSG-------GLPSLGLTLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             EEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEES-CCCSSEEECCCC-------CSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             EEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEEC-Cceeeeeeeeee-------eccceeEEEccccccccceEEEEEE
Confidence            34445566788999999999999999999999999 544432111100       011247999999999999 699999


Q ss_pred             EcCCCceEEEEEEEE
Q psy16261         81 KNTLGGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v   95 (158)
                      .|.+|.....+.|.|
T Consensus        77 ~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          77 ENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EETTEECCEEECCCC
T ss_pred             EcCCCEEEEEEEEEE
Confidence            999999988877654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=1e-15  Score=91.84  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |...+..+.+.+|+.+.|.|.+.|.|.| .+.|+++ +..+............  .    ++|.|.++..+|+|.|+|.|
T Consensus         5 i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~--~----~~L~i~~v~~~D~G~Y~C~a   77 (94)
T d1biha1           5 LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD-GKSYNWQEHNAALRKD--E----GSLVFLRPQASDEGHYQCFA   77 (94)
T ss_dssp             ECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEES-SSBCCTTTTTEEECTT--S----CCEEESSCCGGGCEEEEEEE
T ss_pred             EEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEee-eeeeeeecceeeeccc--c----eEEEEeccChhcCeEEEEEE
Confidence            4456777889999999999999999976 6999999 7777554322222111  1    26999999999999999999


Q ss_pred             EcCCCceE
Q psy16261         81 KNTLGGSE   88 (158)
Q Consensus        81 ~n~~g~~~   88 (158)
                      .|..|...
T Consensus        78 ~N~~G~~~   85 (94)
T d1biha1          78 ETPAGVAS   85 (94)
T ss_dssp             EETTEEEE
T ss_pred             EeCCCEEE
Confidence            99999754

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.3e-15  Score=89.48  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPK-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +.++++.+.+.+|+.+.|.|.+.+.|. +.++|+|+ +..+....+.......        .|.|.+++.+|+|.|+|.|
T Consensus         9 ~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~-~~~l~~~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR-KPAAGSHPSRWAGMGR--------RLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEE-CSSSSCCCEEEEEESS--------EEEECSCCGGGCEEEEEES
T ss_pred             EEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEc-cccccceeeEEecCCC--------EEEECCCChhcCEEEEEEE
Confidence            345677788999999999999998775 58999999 7777666665554444        7999999999999999999


Q ss_pred             EcCCC
Q psy16261         81 KNTLG   85 (158)
Q Consensus        81 ~n~~g   85 (158)
                      .|..+
T Consensus        80 ~n~~~   84 (93)
T d1n26a1          80 AGRPA   84 (93)
T ss_dssp             SSSCS
T ss_pred             CCccc
Confidence            88653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.4e-15  Score=90.60  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ....+.+|+.+.|.|.+.+ +.+.+.|+++ +..+....+..+....       +.|.|.+++.+|.|.|+|.|.|..|.
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~-~~~l~~~~~~~~~~~~-------~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFN-SQSLQLTERMTLSQNN-------SILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEET-TEECCCCTTEEEETTT-------TEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEe-eeecccccceeccCCc-------eEEEEeccchhhceEEEEEEEeCCCC
Confidence            3456789999999999866 5689999999 8888777766654332       26999999999999999999999997


Q ss_pred             eE-EEEEEEEeccC
Q psy16261         87 SE-GVIKVYNIGYF   99 (158)
Q Consensus        87 ~~-~~~~l~v~~~~   99 (158)
                      .. ..+.|.|...|
T Consensus        82 ~~S~~~~L~V~~~P   95 (96)
T d1l6za2          82 RRSNSIKLDIIFDP   95 (96)
T ss_dssp             EECCCCEEEECCSC
T ss_pred             eEEEeEEEEEEcCC
Confidence            74 46788887654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.1e-15  Score=86.99  Aligned_cols=85  Identities=22%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             CeeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         1 ~i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      +|+.+.+.+.+.+|+.+.|.|.+ +.|.|.+.|+++ +..+..+.  ++.+...+ +    .+.|.|.++..+|+|.|+|
T Consensus         2 ~i~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~-~----~~~L~I~~v~~~D~G~Y~C   74 (90)
T d1x44a1           2 MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKN-GEEIIPGPKSRYRIRVEG-K----KHILIIEGATKADAAEYSV   74 (90)
T ss_dssp             CCSBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEET-TEECCCSTTCSEEEEEET-T----EEEEEEEEECTTTCSEEEE
T ss_pred             EEEcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEe-ecccCCCCCccEEEEEeC-C----ccEEEECccccccCEEEEE
Confidence            35667888999999999999998 568899999999 77765543  35444433 1    3479999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy16261         79 NAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~   96 (158)
                      .|.|.    .....|.|.
T Consensus        75 ~a~n~----~~~a~l~V~   88 (90)
T d1x44a1          75 MTTGG----QSSAKLSVD   88 (90)
T ss_dssp             EETTE----EEEEEEEEE
T ss_pred             EEecc----eEEEEEEEE
Confidence            99773    445556554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=6.8e-15  Score=89.42  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee---cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      |..++..+.+.+|+.+.|.|.+.|.|.|.+.|++.++....   ...+.... .........++|.|.+++.+|.|.|+|
T Consensus         4 V~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~tL~I~~v~~~D~G~Y~C   82 (102)
T d1f97a1           4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAP-YADRVTFSSSGITFSSVTRKDNGEYTC   82 (102)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGG-GTTTEEEETTEEEESCCCGGGCEEEEE
T ss_pred             EEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccc-eeeEEEecCCEEEEeECCccCCEEEEE
Confidence            34566778899999999999999999999999987332221   11110000 000000112369999999999999999


Q ss_pred             EEEcCCCceEEEEEEEEe
Q psy16261         79 NAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        79 ~a~n~~g~~~~~~~l~v~   96 (158)
                      .|.|..|.....+.|.|.
T Consensus        83 ~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          83 MVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEETTSSSEEEEEEEEE
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            999999998777666554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.8e-15  Score=90.42  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             eeecCceEEEecC---CCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261          2 IVIPSQLIGARLA---APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC   78 (158)
Q Consensus         2 i~~~~~~~~~~~g---~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   78 (158)
                      +...|..+.+.+|   +.+.|.|.+.|.|.|.+.|+++ +..+............  .    ..|.|..+..+|+|.|+|
T Consensus         7 f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~n-g~~i~~~~~~~~~~~~--~----~~l~i~~~~~~d~G~Y~C   79 (97)
T d1cs6a1           7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMN-GTELKMGPDSRYRLVA--G----DLVISNPVKAKDAGSYQC   79 (97)
T ss_dssp             EEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEET-TEECCCSTTSSEEEET--T----EEEEESCCHHHHCEEEEE
T ss_pred             EEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEe-eeeccCCCCceEEeee--e----eEEEEecccccCCEEEEE
Confidence            3445666666665   6899999999999999999999 7777554322222221  1    258888899999999999


Q ss_pred             EEEcCCCceE-EEEEE
Q psy16261         79 NAKNTLGGSE-GVIKV   93 (158)
Q Consensus        79 ~a~n~~g~~~-~~~~l   93 (158)
                      .|.|.+|... ..+.|
T Consensus        80 ~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          80 VATNARGTVVSREASL   95 (97)
T ss_dssp             EEEETTEEEECCCEEE
T ss_pred             EEEECCCEEEEEEEEE
Confidence            9999999763 34554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=92.67  Aligned_cols=92  Identities=18%  Similarity=0.249  Sum_probs=64.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeec--cc-ceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKF--SS-YKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      ...+..+.+.+|+++.|.|.+.|.|.|.+.|+++ +..+.............  .. ....+.|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (105)
T d1nbqa1           8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFD-QGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM   86 (105)
T ss_dssp             ECSCSBCCEETTCCCEEECEEESCSSEEEEEEEE-ETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEE
T ss_pred             ECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEee-eeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEE
Confidence            3456677899999999999999999999999998 43322111110000000  00 00113699999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy16261         80 AKNTLGGSEGVIKVYN   95 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v   95 (158)
                      |.|..|.....+.|.+
T Consensus        87 a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          87 VSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEETTSSCEECCEEEC
T ss_pred             EEECCCCEEEEEEEEE
Confidence            9999999877666554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.9e-15  Score=89.00  Aligned_cols=76  Identities=21%  Similarity=0.369  Sum_probs=59.7

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      ...+.+|+++.|.|.+.| |.|.+.|.++ +..+.. ..++.+...+        +|.|.+++.+|+|.|+|.|.|..|.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~-g~~l~~~~~~~~~~~~~--------~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQ-NGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEES-SSBCCCCSSSBCCTTTT--------CEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecC-cccceeeeeeeecceee--------EEEECCCCHHHCcEEEEEEEEcCCC
Confidence            456889999999999998 6789999999 655543 3444443333        6999999999999999999999987


Q ss_pred             eEEEEEE
Q psy16261         87 SEGVIKV   93 (158)
Q Consensus        87 ~~~~~~l   93 (158)
                      ......|
T Consensus        76 ~~~~~~l   82 (92)
T d1olza1          76 KTVFQVV   82 (92)
T ss_dssp             SEEEEEE
T ss_pred             EEEEEEE
Confidence            7655444

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.9e-14  Score=84.29  Aligned_cols=86  Identities=12%  Similarity=0.042  Sum_probs=59.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCCeeEE-EcCC-CeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKPITFW-THEN-GSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+.+.+|+++.|.|.+.|.|.|.+.| .++. +..+.......+...     ...+.|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N   81 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSR-----RFIASFNVVNTTKRDAGKYRCMIRT   81 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETT-----EEEEEEEECSCCGGGCSEEEEEEEE
T ss_pred             ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEee-----cCceEEEECCCCHHHCeEEEEEEEe
Confidence            35677899999999999999999886553 2221 332222222222211     1235799999999999999999999


Q ss_pred             CCCceEE-EEEEEE
Q psy16261         83 TLGGSEG-VIKVYN   95 (158)
Q Consensus        83 ~~g~~~~-~~~l~v   95 (158)
                      ..|.... ...|.|
T Consensus        82 ~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          82 EGGVGISNYAELVV   95 (96)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEE
Confidence            9998744 467766

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.53  E-value=1.8e-15  Score=90.01  Aligned_cols=83  Identities=11%  Similarity=0.089  Sum_probs=67.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+.+.+.+.+|+++.|.|.+ +.|.|.+.|+++ +..+..+.++.+...+ +    .+.|.|.++...|+|.|+|.|.|
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~-g~~i~~~~~~~~~~~~-~----~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLK-GQPLTASPDCEIIEDG-K----KHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSS-SCCCCSSSSCEEEECS-S----CEEEECCSCCSCCCSEECCBCSS
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEe-eeecccceeEEEEeec-e----eEEEEEcCCChhcCEEEEEEECc
Confidence            456788899999999999997 578999999999 8888888888777665 2    24799999999999999999977


Q ss_pred             CCCceEEEEEEEEe
Q psy16261         83 TLGGSEGVIKVYNI   96 (158)
Q Consensus        83 ~~g~~~~~~~l~v~   96 (158)
                      ..+    +..|.|.
T Consensus        78 ~~~----sa~l~V~   87 (89)
T d1tiua_          78 AKS----AANLKVK   87 (89)
T ss_dssp             CBC----CEEEEEE
T ss_pred             eEE----EEEEEEE
Confidence            543    3445544

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.3e-14  Score=83.18  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=60.3

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .....+.+|+.+.|.|.+. .|.|.+.|+++ +..+..+ .++.+...+ +    .+.|.|.++...|+|.|+|.|.|. 
T Consensus        13 ~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~-g~~i~~~~~~~~~~~~~-~----~~~L~I~~~~~~D~G~Y~c~a~n~-   84 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELA-DHDAEVKWLKN-GQEIQMSGSKYIFESIG-A----KRTLTISQCSLADDAAYQCVVGGE-   84 (94)
T ss_dssp             CSEEEEETTSCEEEEEECS-SSSSCCEEEES-SSEECCCSSSSEEEEET-T----EEEEEECSCSSSSCEEEEEEETTE-
T ss_pred             CCCEEECcCCeEEEEEEEC-CCCceEEEEEc-CccceeeeeeEeeeccC-C----eEEeecCCCCceecEEEEEEEeeE-
Confidence            3455788999999999984 58999999999 7777654 455555443 1    347999999999999999999773 


Q ss_pred             CceEEEEEEEEe
Q psy16261         85 GGSEGVIKVYNI   96 (158)
Q Consensus        85 g~~~~~~~l~v~   96 (158)
                         ..+..|.|.
T Consensus        85 ---~~s~~l~V~   93 (94)
T d1pd6a_          85 ---KCSTELFVK   93 (94)
T ss_dssp             ---EECCEEEEE
T ss_pred             ---EEEEEEEEE
Confidence               444555553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.50  E-value=4.2e-14  Score=83.70  Aligned_cols=75  Identities=13%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             EEEecCCCEEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+|+ +..+....     ..        ..|.|.+++.+|+|.|.|.|.|..|..
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~-g~~~~~~~-----~~--------~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQN-GKSKKFSR-----SD--------PNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEET-TEEEEEES-----SC--------CEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEee-cccccccc-----cc--------cccccCccCHHHCCeEEEEEEeCCCCE
Confidence            348899999999999755 5668999999 76653221     11        269999999999999999999998875


Q ss_pred             -EEEEEEEEec
Q psy16261         88 -EGVIKVYNIG   97 (158)
Q Consensus        88 -~~~~~l~v~~   97 (158)
                       +..+.|.|..
T Consensus        76 ~S~~v~l~V~~   86 (88)
T d2fcba2          76 SSKPVTITVQA   86 (88)
T ss_dssp             ECCCEEEEECC
T ss_pred             EeeeEEEEEeC
Confidence             3457777765

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.3e-14  Score=83.13  Aligned_cols=80  Identities=18%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             CceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +....+.+|+.+.|.|.+.+.+ ...+.|+|+ +..+.....     .        +.|.|.+++.+|+|.|.|.|.|..
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~-g~~~~~~~~-----~--------~~l~i~~~~~~dsG~Y~C~a~n~~   72 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKD-GEALKYWYE-----N--------HNISITNATVEDSGTYYCTGKVWQ   72 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEET-TEECCSCCC-----S--------SEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEe-eeccccccc-----c--------ceEEEeeeeeecCcEEEEEEEeCC
Confidence            3344578999999999997765 448889999 776643211     1        169999999999999999999988


Q ss_pred             Cce-EEEEEEEEeccC
Q psy16261         85 GGS-EGVIKVYNIGYF   99 (158)
Q Consensus        85 g~~-~~~~~l~v~~~~   99 (158)
                      |.. +..+.|.|...|
T Consensus        73 ~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          73 LDYESEPLNITVIKAP   88 (89)
T ss_dssp             EEEECCCEEEEEECSC
T ss_pred             CCeEeeeEEEEEEeCC
Confidence            765 345778777654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=3.4e-14  Score=86.83  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             CceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ...+.+.+|+.+.|.|.+ .+.|.|.+.|+++ +..+..  ..+.......       ++|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~-g~~~~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLN-EFPNFIPADGRRFVSQTT-------GNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEES-STTCBCCCCSSEEECTTT-------CCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEe-eccccccccceeeeecCC-------CEEeecccccccCcEEEEEEEE
Confidence            455789999999999997 7899999999999 654432  2222222111       2699999999999999999999


Q ss_pred             CCCceEEEE
Q psy16261         83 TLGGSEGVI   91 (158)
Q Consensus        83 ~~g~~~~~~   91 (158)
                      ..|.....+
T Consensus        83 ~~g~~~~~v   91 (105)
T d1cs6a2          83 HIDFITKSV   91 (105)
T ss_dssp             EETTEEEEE
T ss_pred             CCCCEEEEE
Confidence            998876553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.2e-14  Score=84.56  Aligned_cols=70  Identities=20%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             EEEecCCCEEEEe------EEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          9 IGARLAAPLTLDC------HVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         9 ~~~~~g~~v~l~C------~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..+..|....|.|      .+.+.|.|.+.|+++ +..+....+......+        .|.|.++..+|+|.|+|.|.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kd-g~~l~~~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKPLLLDNIHFSGVKD--------RLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEET-TEECCCCSSSEEEETT--------EEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEEC-CccccCCCcEEEecCC--------EEEEcccccccCcEEEEEEEE
Confidence            3577899999999      668999999999999 8888665544444444        699999999999999999999


Q ss_pred             CCCce
Q psy16261         83 TLGGS   87 (158)
Q Consensus        83 ~~g~~   87 (158)
                      ..|..
T Consensus        80 ~~~g~   84 (103)
T d1iray2          80 TYLGK   84 (103)
T ss_dssp             EETTE
T ss_pred             CcCCE
Confidence            88754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=81.07  Aligned_cols=75  Identities=13%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             EEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261          9 IGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|+|+ +..+...     ...        ..|.|.+++.+|+|.|.|.|.|..|..
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kn-g~~~~~~-----~~~--------~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQN-GKDRKYF-----HHN--------SDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEET-TEEEEEE-----EEC--------CCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEc-cccccee-----ccc--------cccEECccceeccceEEEEEEeCCCCe
Confidence            34789999999999875 45568999999 7655321     111        158999999999999999999998865


Q ss_pred             E-EEEEEEEec
Q psy16261         88 E-GVIKVYNIG   97 (158)
Q Consensus        88 ~-~~~~l~v~~   97 (158)
                      . ..+.|.|.+
T Consensus        78 ~S~~v~itV~E   88 (89)
T d1fnla2          78 SSETVNITITQ   88 (89)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EEeeEEEEEEe
Confidence            3 456776654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.47  E-value=7.5e-14  Score=81.88  Aligned_cols=71  Identities=21%  Similarity=0.401  Sum_probs=56.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeE-EEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |++.|....+.+|+++.|.|.+.+.|.+.+. |+++ +..+....       .        .|.|.+++.+|+|.|+|.|
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~-~~~~~~~~-------~--------~l~i~~~~~~d~G~Y~C~a   71 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN-ESLISSQA-------S--------SYFIDAATVNDSGEYRCQT   71 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEET-TEEEESSC-------S--------EEEESSCCGGGCEEEEEEC
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeee-ceeeeecc-------e--------eeEecCCcccCCEEEEEEc
Confidence            5667777779999999999999999988644 6777 66554332       1        6999999999999999999


Q ss_pred             EcCCCceE
Q psy16261         81 KNTLGGSE   88 (158)
Q Consensus        81 ~n~~g~~~   88 (158)
                      .|..++..
T Consensus        72 ~~s~~S~~   79 (84)
T d1fnla1          72 NLSTLSDP   79 (84)
T ss_dssp             SSSCCCCC
T ss_pred             cCCCcccc
Confidence            98765543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3e-14  Score=87.59  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=60.5

Q ss_pred             EEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecc---cceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFS---SYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+.+|+.+.|.|.+. |.|.+.+.|+++ +..+..............   .....+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEET-TEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeC-CeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            477999999999985 899999999999 665543322211110000   000123689999999999999999999999


Q ss_pred             ceEE--EEEEEEecc
Q psy16261         86 GSEG--VIKVYNIGY   98 (158)
Q Consensus        86 ~~~~--~~~l~v~~~   98 (158)
                      ....  .+.|.|.+.
T Consensus        92 ~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          92 TAMRSEAAHMDAVEL  106 (110)
T ss_dssp             CCEECCCEEEEEESS
T ss_pred             cEEEEEEEEEEEEec
Confidence            8755  466666554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-14  Score=90.18  Aligned_cols=90  Identities=22%  Similarity=0.390  Sum_probs=68.3

Q ss_pred             ceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAKN   82 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~n   82 (158)
                      +.+.+.+|+.+.|.|.+.+.| .+.+.|+++ +..+...  .++.+.... ......+.|.|.++...| .|.|+|.|.|
T Consensus        14 ~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~-~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N   91 (115)
T d2crya1          14 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENVLESGTSGRYTVETIS-TEEGVISTLTISNIVRADFQTIYNCTAWN   91 (115)
T ss_dssp             CCCCCCTTSCCCCCEEECCSSCCSEEEEESS-SCEECSEEETTEEEEEEE-ETTEEEEEEECTTCCHHHHHSCEEEEEEC
T ss_pred             CCEEEecCCEEEEEEEeecCCCeeEEEEeee-eeeEeeeeeeeEeeeeec-cccCcEEEEEEeccchhcCCeEEEEEEEE
Confidence            345577899999999999964 557999999 6666443  344444332 222234679999999999 6999999999


Q ss_pred             CCCceEEEEEEEEecc
Q psy16261         83 TLGGSEGVIKVYNIGY   98 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~   98 (158)
                      .+|..++.+.|.|...
T Consensus        92 ~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          92 SFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             SSCEEEEEECCCCSCS
T ss_pred             CCCeEEEEEEEEEECC
Confidence            9999999999988654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-15  Score=91.36  Aligned_cols=84  Identities=21%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             EEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261          9 IGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|+++ +..+....+........  ......+.|.|.+++.+|.|.|+|.|.|.+|
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEEC-CEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            357889999999998 4899999999999 66654432221111110  0111124699999999999999999999999


Q ss_pred             ceEEEEEE
Q psy16261         86 GSEGVIKV   93 (158)
Q Consensus        86 ~~~~~~~l   93 (158)
                      ....+..+
T Consensus        91 ~~~~s~~v   98 (104)
T d1nbqa2          91 TPMTSNAV   98 (104)
T ss_dssp             CCEECCCB
T ss_pred             ceEEEEEE
Confidence            88665443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.43  E-value=1e-13  Score=81.43  Aligned_cols=76  Identities=22%  Similarity=0.377  Sum_probs=59.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |++.|+...+.+|+.+.|.|.+.+.|.+ .+.|+++ +..+.....               .|.|.+++.+|+|.|.|.+
T Consensus         7 i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~-g~~~~~~~~---------------~l~i~~v~~~dsG~Y~C~a   70 (85)
T d2fcba1           7 LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHN-GNLIPTHTQ---------------PSYRFKANNNDSGEYTCQT   70 (85)
T ss_dssp             EEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEET-TEECTTCCS---------------SEEEEECCGGGCEEEEEEC
T ss_pred             EEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecc-ccccccccc---------------ceEEeeccccCCcEEEEEC
Confidence            5666777779999999999999999877 5778988 776644321               4889999999999999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy16261         81 KNTLGGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v   95 (158)
                      .|..++..  +.|.|
T Consensus        71 ~ns~~S~~--v~l~V   83 (85)
T d2fcba1          71 GQTSLSDP--VHLTV   83 (85)
T ss_dssp             TTSBCCCC--EEEEE
T ss_pred             CCCccccc--EEEEE
Confidence            98765544  34444

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.7e-13  Score=80.72  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             CceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          6 SQLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+...+|+.+.|.|.+. +.|.+.+.|+++ +..+.  ...+.++....       ++|.|.+++.+|+|.|+|.+.|
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N   80 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKD-DSKTPVSTEQASRIHQHK-------EKLWFVPAKVEDSGHYYCVVRN   80 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECS-STTSBCCCCTTSSEEEET-------TEEEETTCCGGGCEEEEEEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEEC-CcccccccccceEEeccC-------CEEEeccceecCCEEEEEEEEC
Confidence            4456688899999999885 678999999999 43322  22222222222       2799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccC
Q psy16261         83 TLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        83 ~~g~~~~~~~l~v~~~~   99 (158)
                      ..|.....+.|.|....
T Consensus        81 ~~g~~~~~~~L~V~~~~   97 (101)
T d1iray1          81 SSYCLRIKISAKFVENE   97 (101)
T ss_dssp             TTEEEEEEEEEEEECCC
T ss_pred             CCCeEEEEEEEEEEeCC
Confidence            99999999999987653

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=80.27  Aligned_cols=77  Identities=22%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             CeeecCceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          1 MIVIPSQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         1 ~i~~~~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      +|++.|....+.+|+.+.|.|.+.+.|.+. +.|+++ +..+....       .        .|.|.+++.+|+|.|.|.
T Consensus         3 ~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~-~~~~~~~~-------~--------~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           3 KVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEETN-------S--------SLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCEEESSCSEEETTCCEEEECCTTCC----CCEEEET-TEECSCCS-------S--------EEEECSCCGGGCEEEEEE
T ss_pred             EEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeee-eeeeeccc-------c--------eeEECCCChhhCCcEEEE
Confidence            467777777899999999999999999885 456777 66554322       1        599999999999999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy16261         80 AKNTLGGSEGVIKVYN   95 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v   95 (158)
                      |.|..++..  +.|.|
T Consensus        67 a~~s~~S~~--v~l~V   80 (82)
T d1f2qa1          67 HQQVNESEP--VYLEV   80 (82)
T ss_dssp             CTTSSCCCC--EEEEE
T ss_pred             ecCCCCccc--EEEEE
Confidence            998766543  44444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-13  Score=81.96  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=61.9

Q ss_pred             eecCceEEEecCCCEEEEeEEee-cCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVES-YPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      .+.+....+.+|+.+.|.|.+.| .|.|  .++|+++ +..+.....        ......+.|.|..+..+|.|.|+|.
T Consensus         8 ~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~-~~~l~~~~~--------~~~~~~s~l~i~~~~~dd~g~ytC~   78 (103)
T d1iama1           8 ELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG-EKELKREPA--------VGEPAEVTTTVLVRRDHHGAQFSCR   78 (103)
T ss_dssp             EECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET-TEEEEEEEC--------CTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             EEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccc-ccccccccc--------ccccceEEEEEeeehhHCCCEEEEE
Confidence            34444556889999999999987 5655  5779999 766643211        1122345799999999999999999


Q ss_pred             EEcCCCceEEEEEEEEe
Q psy16261         80 AKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        80 a~n~~g~~~~~~~l~v~   96 (158)
                      |.|.+|.....+.+.+.
T Consensus        79 A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          79 TELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEECGGGTSCEEEEEC
T ss_pred             EEeCCCCccCeEeeeEc
Confidence            99999987666665553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.33  E-value=2.5e-13  Score=83.74  Aligned_cols=79  Identities=30%  Similarity=0.507  Sum_probs=59.2

Q ss_pred             EEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecC-------CeEEEEEeecccceEEEEEEEcCCCCCCCe---EEE
Q psy16261          9 IGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEG-------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG---TYK   77 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G---~Y~   77 (158)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|+++ +..+...       .++.....+        .|.|.+++..|+|   .|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~D~gd~g~Y~   82 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKR-LSGADPNADVTDFDRRITAGPDG--------NLYFTIVTKEDVSDIYKYV   82 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEE-ETTSCGGGCCCCCCTTEEECTTS--------CEEEEEECGGGCCSSEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeC-Cccccccccceeeeeeecccccc--------ccEEeeeEeeccCCceEEE
Confidence            346689999999996 8999999999998 4433221       223333333        6999999998877   699


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy16261         78 CNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        78 C~a~n~~g~~~~~~~l~v~   96 (158)
                      |.|.|.+|.....+.+.+.
T Consensus        83 C~A~N~~g~~~~~~~~~~i  101 (111)
T d1biha2          83 CTAKNAAVDEEVVLVEYEI  101 (111)
T ss_dssp             EEEECTTCSSCEEEEEEEE
T ss_pred             EEEEeCCCCceEEEEEEEe
Confidence            9999999988776655444

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.3e-12  Score=77.38  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             ecCceEEEecCCCEEEEeEEee-cC--CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVES-YP--KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g-~p--~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +......+.+|+.+.|.|.+.| .|  .+.++|+++ +..+.........   .......+.|.+.....+|.|.|+|.|
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~-~~~i~~~~~~~~~---~~~~~~~s~l~~~~~~~d~g~~ytC~A   82 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG-NETLHYETFGKAA---PAPQEATATFNSTADREDGHRNFSCLA   82 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEET-TEEEEEEECCSST---TCTTCEEEEEEEECCGGGGGCEEEEEE
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcC-CEEeeecccceEe---ecccceeEEEEEeeehhcCCcEEEEEE
Confidence            3444446789999999999987 44  458999999 7776533211111   112223456888877888888999999


Q ss_pred             EcCCCceEEEEEEEE
Q psy16261         81 KNTLGGSEGVIKVYN   95 (158)
Q Consensus        81 ~n~~g~~~~~~~l~v   95 (158)
                      .|.++.....+.+.+
T Consensus        83 ~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          83 VLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEECGGGTCCEEEEE
T ss_pred             EecCCCCCCeeEecc
Confidence            999886654444444

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=1e-10  Score=72.88  Aligned_cols=96  Identities=20%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCeee----ec------------CCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLI----HE------------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~   62 (158)
                      |..+...+.+..|+++.|.|......   ...+.|++.+....    ..            ..|......  .......+
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~s   82 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE--SIGEGKVA   82 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECT--TGGGTEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeec--cccCCeEE
Confidence            34566678899999999999986433   23688988632110    00            012222211  11122458


Q ss_pred             EEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      |.|.+++.+|+|.|.|.+.+..+..+..+.|.|..++
T Consensus        83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          83 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            9999999999999999999998888888889887653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.8e-11  Score=70.72  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=55.5

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccc---eEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSY---KFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +.+....|+++.|.|.. ..|.+.+.|+++ +..+..  ..............   ...++|.|.+++.+|+|.|.|.+.
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEe-ccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence            45678899999999986 468889999998 554421  11111100000000   012369999999999999999999


Q ss_pred             cCCCceEEEEE
Q psy16261         82 NTLGGSEGVIK   92 (158)
Q Consensus        82 n~~g~~~~~~~   92 (158)
                      |..+.....++
T Consensus        81 n~~~t~~~~l~   91 (93)
T d1ccza1          81 NITDTMKFFLY   91 (93)
T ss_dssp             TCCSCEEEEEE
T ss_pred             CCCcEEEEEEE
Confidence            98776654443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=3.2e-10  Score=67.87  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=57.2

Q ss_pred             ceEEEecCCCEEEEeEEee--cCCCeeEEEcCCCeeeec----------CCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          7 QLIGARLAAPLTLDCHVES--YPKPITFWTHENGSLIHE----------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g--~p~p~i~W~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      ..+.-..|++|.|.|....  .....+.|+++ +..+..          ..+..+...+        +|.|.+++.+|+|
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~ng--------SL~I~nl~~~DsG   73 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERG-STLVAEFKRKMKPFLKSGAFEILANG--------DLKIKNLTRDDSG   73 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEET-TEEEEEEETTSCCEESSTTEEECTTS--------CEEESSCCGGGCE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeecc-ccceeEEccCCccccCCCeEEECCCc--------cEEEeCCCHHHCE
Confidence            3456778999999996432  23347999998 554421          1233333223        7999999999999


Q ss_pred             EEEEEEEcCCCce--EEEEEEEEe
Q psy16261         75 TYKCNAKNTLGGS--EGVIKVYNI   96 (158)
Q Consensus        75 ~Y~C~a~n~~g~~--~~~~~l~v~   96 (158)
                      .|.|.+.+..|..  ...+.|.|.
T Consensus        74 ~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          74 TYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEEEEEEEE
Confidence            9999999998876  456666664

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-09  Score=66.43  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=60.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCC----eeEEEcCCCe------e-ee-c------------CCeEEEEEeecccce
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKP----ITFWTHENGS------L-IH-E------------GSRYHMWTEKFSSYK   58 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p----~i~W~~~~~~------~-~~-~------------~~~~~~~~~~~~~~~   58 (158)
                      +.+...+.+.+|+++.|.|.....+.+    .+.|++....      . +. .            ..|.......  ...
T Consensus         8 t~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~   85 (124)
T d1eaja_           8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND--LKS   85 (124)
T ss_dssp             SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC--GGG
T ss_pred             EccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccC--CCC
Confidence            445566788999999999998765432    5789863111      0 00 0            1222222111  111


Q ss_pred             EEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261         59 FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI   96 (158)
Q Consensus        59 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   96 (158)
                      ...+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            12369999999999999999999988877777777764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.5e-10  Score=68.82  Aligned_cols=84  Identities=13%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCe----eee--------------cCCeEEEEEeecccceEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS----LIH--------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~----~~~--------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++.+....+.+|+++.|.|.........+.|+|....    .+.              ..+|..+...+        +|.
T Consensus         3 ti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng--------SL~   74 (107)
T d1l6za1           3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--------SLL   74 (107)
T ss_dssp             EEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS--------CEE
T ss_pred             EEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc--------cEE
Confidence            3433333467999999999855444668999886211    010              01344444333        799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC-ceEEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG-GSEGVIKVY   94 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~   94 (158)
                      |.+++.+|+|.|+|.+.+..+ ...+.+.|.
T Consensus        75 I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          75 FQMITMKDMGVYTLDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEECCCCEEEC
T ss_pred             EcCCCchhCEEEEEEEEECCCCEEEEEEEEE
Confidence            999999999999999987654 334455554

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.69  E-value=1.1e-07  Score=58.08  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---ee-ee--------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SL-IH--------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~-~~--------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..|..+.+.+|+.+.|.|.........+.|++.. +   +. +.        ...++......   -....+|.|.++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~sL~i~~~   79 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA---DTKQSSLHITAS   79 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCS---SSSEEEEEECSC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecC---cccccccEEccc
Confidence            455677888999999999999887777789998641 1   11 11        11233332222   112457999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+....
T Consensus        80 ~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          80 QLSDSASYICVVSDRG   95 (114)
T ss_dssp             CGGGCSEEEEEEECSC
T ss_pred             ChhhCcccceeeecCC
Confidence            9999999999988753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.68  E-value=4.8e-07  Score=55.25  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee------------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |+..+..+.+.+|+.+.|.|...+. ....+.|++.. +.   .+.            ...|+........   ...+|.
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~---~~~~L~   79 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQ---KAFHLV   79 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGG---TEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCce---eEEeee
Confidence            4556777889999999999998554 45689998620 11   111            1135544433311   134799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCC
Q psy16261         65 IGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      |.+++.+|+|.|.|.+....+
T Consensus        80 I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          80 ISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECTTT
T ss_pred             ecCccccccccceeeEecCCC
Confidence            999999999999998776543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.67  E-value=1.3e-07  Score=57.73  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=54.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+.++..+.+.+|+.+.|.|.........+.|++.. +   +.+.         ...++.........   ...|.|.++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~~   80 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSS---SFHLQKSSA   80 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGT---BCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCC---eEEeecccc
Confidence            455677788999999999999988777889998741 1   1111         01233333222111   125999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy16261         69 SKSDFGTYKCNAKNTL   84 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~   84 (158)
                      +.+|+|.|.|.+....
T Consensus        81 ~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          81 QLSDSALYYCALFLAS   96 (115)
T ss_dssp             CGGGCEEEEEEEEECS
T ss_pred             ccccCccceEEEEcCC
Confidence            9999999999876543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=4.3e-07  Score=55.31  Aligned_cols=79  Identities=14%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-Cee---e-e---------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-GSL---I-H---------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~~~---~-~---------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ++..|..+.+.+|+.+.|.|...+.. ...+.|++.. +..   + .         ...|+........   ....|.|.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~---~~~~L~I~   78 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNR---HDFHMNIL   78 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTS---SEEEEEES
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCC---CEEEEEEC
Confidence            56678888899999999999986543 4468898731 111   1 1         1235554433211   12469999


Q ss_pred             CCCCCCCeEEEEEEEcC
Q psy16261         67 SLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~   83 (158)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          79 DTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccCcCCCeEEEEEEEeC
Confidence            99999999999987654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=1.4e-07  Score=57.59  Aligned_cols=93  Identities=24%  Similarity=0.343  Sum_probs=56.6

Q ss_pred             CeeecCceEEEecCCCEEEEeEEeec----CCCeeEEEcCC--Ce---ee-e---------c----CCeEEEEEeecccc
Q psy16261          1 MIVIPSQLIGARLAAPLTLDCHVESY----PKPITFWTHEN--GS---LI-H---------E----GSRYHMWTEKFSSY   57 (158)
Q Consensus         1 ~i~~~~~~~~~~~g~~v~l~C~~~g~----p~p~i~W~~~~--~~---~~-~---------~----~~~~~~~~~~~~~~   57 (158)
                      |+...+..+.+..|+++.|.|.....    ....+.|++..  +.   .+ .         .    .+|+.+....   .
T Consensus         1 vvv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~   77 (119)
T d1neua_           1 IVVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP---S   77 (119)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG---G
T ss_pred             CEEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEEC---C
Confidence            45567777889999999999987532    23378897631  10   11 0         0    0233322111   0


Q ss_pred             eEEEEEEEcCCCCCCCeEEEEEEEcCCC--ceEEEEEEEEe
Q psy16261         58 KFYMRLYIGSLSKSDFGTYKCNAKNTLG--GSEGVIKVYNI   96 (158)
Q Consensus        58 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~   96 (158)
                      ....+|.|.+++..|+|.|.|.+.+..+  .....+.|.|.
T Consensus        78 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            0123699999999999999999988543  33445666664

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=1.8e-07  Score=56.43  Aligned_cols=77  Identities=18%  Similarity=0.320  Sum_probs=54.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +..   +.         ...++...... .    ...|.|.++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-~----~~~L~I~~~   78 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-T----DFTLSINSV   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-C----EEEEEEccc
Confidence            455677788999999999999876666789998752 111   11         12455554433 2    247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          79 ETEDFGMYFCQQANS   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcCCCEEEEEEcCCC
Confidence            999999999976543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=1.3e-07  Score=56.95  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=53.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC--C-e-eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN--G-S-LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~--~-~-~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+.+.|.|.........+.|++..  . . .+.         ...++.....+     ...+|.|.++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~L~I~~~   77 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG-----RDYSFSISNL   77 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-----TEEEEEECSC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC-----CEeeeEehhh
Confidence            445677788999999999999877666689998741  1 1 111         11344444332     1247999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|++.|.|.+..
T Consensus        78 ~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 EPEDIATYYCLQYY   91 (106)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCEeEEEEEeC
Confidence            99999999998654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=7e-08  Score=59.65  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce-------eeecC---------------CeEEEEEeecccce
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS-------LIHEG---------------SRYHMWTEKFSSYK   58 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~-------~~~~~---------------~~~~~~~~~~~~~~   58 (158)
                      |...|..+.+.+|+++.|.|.+.+...+.+.|++.. +.       .+...               .++.......+   
T Consensus         4 ~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---   80 (122)
T d1nezg_           4 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN---   80 (122)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT---
T ss_pred             eEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC---
Confidence            566788888999999999999988878889998620 11       11100               12222222111   


Q ss_pred             EEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261         59 FYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        59 ~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                       ...|.|.+++.+|+|.|.|.+..
T Consensus        81 -~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 -KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             -EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             -EeEEEEcccccCCCEEEEeeEeC
Confidence             23699999999999999998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=1.4e-07  Score=56.88  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +..   +.         ...++.....+ +    ...|.|.++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~-~----~~~L~I~~~   78 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-T----DFVFTIENT   78 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC-C----eeeecccCC
Confidence            345577788899999999999876666689998631 211   11         12455443332 2    247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          79 LSEDVGDYYCLQSFN   93 (106)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCEEEeEecCcc
Confidence            999999999976543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.7e-08  Score=56.92  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             eEEEecCCCEEEEeEEeecCCCeeEEEcCCCee-eecC------------CeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSL-IHEG------------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      .+...+|+++.|.|.........+.|++..... +...            .|+......  .-....+|.|.+++.+|+|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL--WDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGG--GGGTBCCEEECSCCGGGCE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEecc--CCCCEEEEEECCCChHHCE
Confidence            456779999999999887777789998763221 1111            122111111  0011236999999999999


Q ss_pred             EEEEEEEcC
Q psy16261         75 TYKCNAKNT   83 (158)
Q Consensus        75 ~Y~C~a~n~   83 (158)
                      .|.|.+.+.
T Consensus        81 ~Y~C~v~~~   89 (97)
T d2nxyb1          81 TYICEVEDQ   89 (97)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEEecC
Confidence            999998763

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-07  Score=56.96  Aligned_cols=92  Identities=13%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCe----ee-e--------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP---KPITFWTHENGS----LI-H--------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~----~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .|..+.+.+|+++.|.|......   ...+.|++....    .+ .        ...++.+.....   ....+|.|.++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~l   81 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE---NGTFVVNIAQL   81 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETT---TTEEEEEECSC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCC---CCEEEEEEhhh
Confidence            45678899999999999875322   235779764111    11 0        113444433321   12347999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261         69 SKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF   99 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~   99 (158)
                      +.+|+|.|.|.+..........+.|.|....
T Consensus        82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          82 SQDDSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             CGGGCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CcCCCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999999999887554444556778777653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=3.9e-07  Score=54.83  Aligned_cols=76  Identities=18%  Similarity=0.354  Sum_probs=53.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +.   .+.         ...++...... .    ...|.|.++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~----~~~L~I~~l   78 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA-T----DFTLTISSV   78 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEEESSC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC-C----eeecEEHhh
Confidence            345677788999999999999887766789998641 11   111         12344443222 1    247999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          79 QADDDADYYCGQSY   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eecCCceEEEEecC
Confidence            99999999997654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.60  E-value=2.5e-07  Score=56.27  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..|..+.+.+|+.+.|.|...+.....+.|++.. +..   +.         ...++........   ....|.|.++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~   79 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS---GRSTLYIAAS   79 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTT---TEEEEEESSC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCC---CEEEeeeecC
Confidence            456677888999999999999987766789998731 211   10         1123333322211   1347999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy16261         69 SKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g   85 (158)
                      +.+|+|.|.|.+....+
T Consensus        80 ~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          80 QPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             CGGGCEEEEEEEEESSS
T ss_pred             CCCCCcEEeEeEecCCC
Confidence            99999999998875543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.6e-07  Score=56.62  Aligned_cols=76  Identities=22%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+++.|.|...+.....+.|++.. +.   .+.         ...++...... +    ...|.|.+++
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~-~----~~~L~I~~~~   79 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSG-K----DYTLSITSLQ   79 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-S----SEEEEESSCC
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCC-C----eEEeEEcccc
Confidence            44577788999999999999877666689998741 11   111         11455554332 2    2479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+...
T Consensus        80 ~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          80 TEDVATYFCQQYWS   93 (107)
T ss_dssp             GGGCSEEEEEECSS
T ss_pred             cccCCcEEEeeccC
Confidence            99999999977643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.58  E-value=2.6e-07  Score=55.67  Aligned_cols=77  Identities=22%  Similarity=0.360  Sum_probs=53.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +.   .+.         ...++......     ....|.|.++
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l   78 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG-----TEFTLTISTL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-----TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC-----CEEEEEeccc
Confidence            345577788999999999999976666789998741 11   111         11344443322     1347999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|++.|.|.+...
T Consensus        79 ~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          79 RPEDFATYYCQQLHF   93 (107)
T ss_dssp             CGGGCSEEEEEECSB
T ss_pred             eeCcCceEEEEECcC
Confidence            999999999976543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=3.2e-07  Score=55.25  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee----e--------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI----H--------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~----~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+++.|.|.........+.|++.. +..+    .        ...++...... +    ...|.|.+++
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~L~I~~l~   79 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG-S----DYSLTISSLE   79 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC-C----EEEEEEhhhc
Confidence            34567777899999999999877667789998731 2211    1        11244433322 2    2479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          80 SEDFADYYCLQYAS   93 (107)
T ss_dssp             GGGCSEEEEEECSS
T ss_pred             ccCCeEEEEecCcC
Confidence            99999999976653

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.57  E-value=4.2e-07  Score=55.20  Aligned_cols=79  Identities=24%  Similarity=0.368  Sum_probs=54.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-C----eeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-G----SLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      |...|..+.+.+|+.+.|.|...+.  ....+.|++.. +    ..+....++......+.   ....|.|.+++.+|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~---~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS---KSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCC---ceeeeEecCCcCccCE
Confidence            4456777888999999999988653  35689999731 1    12223345544433321   1247999999999999


Q ss_pred             EEEEEEEcC
Q psy16261         75 TYKCNAKNT   83 (158)
Q Consensus        75 ~Y~C~a~n~   83 (158)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999976644

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.57  E-value=4.2e-07  Score=55.37  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=52.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee-c---------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH-E---------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~-~---------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      |+..+..+.+.+|+.+.|.|.........+.|++.. +   +.+. .         ..++.........   ...|.|.+
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~   79 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSET---SFHLTKPS   79 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGT---BCCEEESS
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCC---EEEEeecc
Confidence            455677788999999999999877666789998731 1   1111 0         1122222211111   12599999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy16261         68 LSKSDFGTYKCNAKNT   83 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~   83 (158)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             ccccCCccceeeecCC
Confidence            9999999999998764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=3.7e-07  Score=54.98  Aligned_cols=77  Identities=14%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++.+|..+.+.+|+++.|.|.........+.|++.. +.   .+.         ...++...... .    ...|.|.++
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~-~----~~~L~I~~~   78 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG-T----DFTLTINNV   78 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC-C----eeeeeechh
Confidence            445677788999999999999866656689998641 11   111         11355443332 2    246999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|++.|.|.+...
T Consensus        79 ~~~DsA~YyCa~~~~   93 (107)
T d1mexl1          79 QSEDLAEYFCQQYNS   93 (107)
T ss_dssp             CGGGCSEEEEEECSS
T ss_pred             heecceeEEEeECCC
Confidence            999999999976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.55  E-value=3.9e-07  Score=54.81  Aligned_cols=76  Identities=21%  Similarity=0.384  Sum_probs=53.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.....-...+.|++.. +   +.+.         ...++...... .    ...|.|.++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~-~----~~~L~I~~~   77 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG-T----EFTLTISGL   77 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEEESC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC-C----EEEEEEccc
Confidence            345677888999999999999877666689998751 1   1111         11355444332 1    246999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|++.|.|.+..
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          78 QFDDFATYHCQHYA   91 (106)
T ss_dssp             CGGGCSEEEEEEEC
T ss_pred             cccCCCcEeeeeCC
Confidence            99999999998664

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=7.3e-07  Score=53.74  Aligned_cols=77  Identities=23%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee-ec--------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI-HE--------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +.   .+ ..        ..++......     ....|.|.++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~l   78 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-----TDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-----SEEEEEECSC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC-----CEEEeEeeee
Confidence            345677788899999999999877666789998641 11   11 11        1223222221     1247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          79 EPEDFAMYICQQHNE   93 (108)
T ss_dssp             CTTCCSEEEEEECSS
T ss_pred             EeccceEEEEeeCCC
Confidence            999999999976654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-06  Score=51.87  Aligned_cols=72  Identities=13%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             cCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~   88 (158)
                      .++.+.|.|.+.| +|.+.+.|+++ +..+............++.|...+.|.+..   .+...|+|.++...-...
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n-~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLEN-GEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEES-SCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecC-CcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCc
Confidence            4677899999998 68899999999 776654433333333346788888888863   345789999998754433

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-07  Score=55.34  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      |+..|..+ +..|++|+|.|... .+...+.|+|+ +.... ...+.......     ....+.|.+++..|+|.|.|..
T Consensus        10 Lsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~l~k~-g~~~~~~~~~~~~~~~~-----~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1          10 ISAKSSPV-IPLDGSVKIQCQAI-REAYLTQLMII-KNSTYREIGRRLKFWNE-----TDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             EEESSCSE-EETTCCEEEEECCC-TTCSEEEEEEE-ETTEEEECSEECC---------CCCEEEECSCCGGGCEEEEEEE
T ss_pred             EEecCCCc-eeCCCeEEEEEcCC-CCCcEEEEEEC-CCcCceeccccccCCCC-----ceEEEEecCCCHHHCceEEEEE
Confidence            44555554 78999999999874 34557778887 43211 11111000000     1126899999999999999999


Q ss_pred             EcCCC
Q psy16261         81 KNTLG   85 (158)
Q Consensus        81 ~n~~g   85 (158)
                      .+...
T Consensus        82 ~~~~~   86 (99)
T d1ucta1          82 RIGHY   86 (99)
T ss_dssp             EETTT
T ss_pred             ECCCc
Confidence            88765

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.52  E-value=5e-07  Score=55.03  Aligned_cols=78  Identities=23%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-c--C-------CeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-E--G-------SRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-~--~-------~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      |+.++..+.+.+|+++.|.|.......+.+.|++.. +.   .+. .  .       .+........+.   ...|.|.+
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~   79 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNS---SFHLRKAS   79 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTT---BCCEEESS
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCC---EEEEeccc
Confidence            445666788999999999999877667788998631 21   111 0  1       111111111111   13699999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|+|.|.|.+..
T Consensus        80 ~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          80 VHWSDSAVYFCAVSG   94 (115)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccccceecccccC
Confidence            999999999998764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.52  E-value=8.2e-07  Score=53.93  Aligned_cols=78  Identities=29%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce----eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS----LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG   74 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   74 (158)
                      |+..|..+.+.+|+++.|.|...+.  ....+.|++.. +.    .+....++........   ....|+|.+++.+|+|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC---CceeeeecccccCCcc
Confidence            4556778889999999999998754  34568998631 11    2223455555443321   1247999999999999


Q ss_pred             EEEEEEEc
Q psy16261         75 TYKCNAKN   82 (158)
Q Consensus        75 ~Y~C~a~n   82 (158)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99998754

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.50  E-value=7.5e-07  Score=54.11  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee---c-------CCeEEEEEeecccceEEEEEEEc
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH---E-------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~---~-------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      |+..+..+.+.+|++|.|.|..... ....+.|++.. +.   .+.   .       ..++.......+   ....|.|.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~   79 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKST---SSFNFTIT   79 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTT---TEEEEEES
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCC---CEEEEeec
Confidence            4566777889999999999987543 34578898731 11   111   0       012222222111   13479999


Q ss_pred             CCCCCCCeEEEEEEEcCCC
Q psy16261         67 SLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +++.+|+|.|.|.+....+
T Consensus        80 ~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             SCCGGGCEEEEEEEECSBT
T ss_pred             ccccccCCCceEeCCCCCC
Confidence            9999999999998776544

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.50  E-value=2.4e-06  Score=51.59  Aligned_cols=78  Identities=15%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |...|..+.+.+|+.+.|.|.........+.|++.. +.   .+.         ...++........   ....|.|.++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~   79 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSA---KHLSLHIVPS   79 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTT---TEEEEEESSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccC---CEEEEEECCC
Confidence            455677778899999999999877777788998741 11   111         0123333322211   2457999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          80 QPGDSAVYFCAAME   93 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             cccccEEEEeeccC
Confidence            99999999998764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.2e-07  Score=54.81  Aligned_cols=74  Identities=15%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      +..+..+ +..|++|.|.|.... +...+.|+|+ +.........    .  ......+.+.|.+++..|+|.|.|...+
T Consensus         8 sa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~-g~~~~~~~~~----~--~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1           8 WAEPHFM-VPKEKQVTICCQGNY-GAVEYQLHFE-GSLFAVDRPK----P--PERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             EEESCSE-EETTCCEEEEEECCT-TCCEEEEEET-TEEEEEECCS----S--CTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeeCCCc-ccCCCcEEEEEecCC-CccEEEEEEC-CCCcceeEEc----c--CCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            4445444 779999999998743 3556778888 5432211000    0  0011123699999999999999999877


Q ss_pred             CCC
Q psy16261         83 TLG   85 (158)
Q Consensus        83 ~~g   85 (158)
                      ..+
T Consensus        79 ~~~   81 (95)
T d1olla1          79 GEL   81 (95)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            544

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=9.7e-07  Score=53.08  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-------c--CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-------E--GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-------~--~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.........+.|++.. +.   .+.       .  ..++...... .    ...|.|.++
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~-~----~~~L~I~~~   78 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG-Q----DYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC-C----EEEcccccc
Confidence            345567777899999999999877666678898641 11   111       0  1345443332 1    247999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|++.|.|.+...
T Consensus        79 ~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          79 EYEDMGIYYCLQYDE   93 (107)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CCcCCEEEEeeeccC
Confidence            999999999976543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.47  E-value=1e-06  Score=53.08  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+.+.|.|...+.....+.|++.. +   +.+.         ...++.....+ +    ...|.|.+++
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~----~~~L~I~~l~   81 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG-T----DYTFTISSLQ   81 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEEESSCC
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC-C----EeEEEEeece
Confidence            44567778999999999999977666788998741 1   1111         11345443322 1    2369999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|++.|.|.+..
T Consensus        82 ~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          82 PEDIATYYCQQYQ   94 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             eCcCceEEEeecC
Confidence            9999999997654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=1.5e-06  Score=53.14  Aligned_cols=78  Identities=13%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeee-----------------cCCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIH-----------------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      |+..|..+.+.+|+++.|.|...+.....+.|++.. ++.+.                 ...++...... +   ..+.|
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~-~---~~~~L   79 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHAS-P---TLSTL   79 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECS-S---SEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccc-c---ccccc
Confidence            556677777999999999999877767789998741 21110                 01244433222 1   12479


Q ss_pred             EEcCCCCCCCeEEEEEEEcC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|.+++.+|+|.|.|.+...
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECS
T ss_pred             cccccccccCceEEEEEecC
Confidence            99999999999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=1.1e-06  Score=53.34  Aligned_cols=80  Identities=19%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEee-cCCCeeEEEcCC-Cee----ee---------cCCeEEEEEeecccceEEEEEEEc
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHEN-GSL----IH---------EGSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~-~~~----~~---------~~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      |+..+..+.+.+|++|.|.|.... .....+.|++.. +..    +.         ...++........   ....|.|.
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~   78 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK---SSIGLIIT   78 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG---TEEEEEEC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC---CEEEEEEC
Confidence            556777888999999999998754 334568898741 111    11         0123444332211   13479999


Q ss_pred             CCCCCCCeEEEEEEEcCC
Q psy16261         67 SLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n~~   84 (158)
                      +++.+|+|.|.|.+....
T Consensus        79 ~~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          79 ATQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             SCCGGGCEEEEEEEECCC
T ss_pred             CCCccccccccceeecCC
Confidence            999999999999876543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.46  E-value=9.2e-07  Score=53.79  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             eecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC----Ceeee------c-----------CCeEEEEEeecccceEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN----GSLIH------E-----------GSRYHMWTEKFSSYKFY   60 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~----~~~~~------~-----------~~~~~~~~~~~~~~~~~   60 (158)
                      ...|..+.+.+|+++.|.|.+.+. ....+.|++..    .+.+.      .           ..++........   ..
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~   78 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDS---RR   78 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTS---SS
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCC---Ce
Confidence            345666779999999999998774 45578998641    11110      0           112222222211   12


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEc
Q psy16261         61 MRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        61 ~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            3699999999999999998754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=2.8e-06  Score=51.65  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=58.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee-e--------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI-H--------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..|..+.+.+|+++.|.|...+. ...+.|++.. +.   .+ .        ...++.......   .....|.|.++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~   78 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDA---RKDSSLHITAA   78 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTT---SSEEEEEESSC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccc---cceeeeeecCC
Confidence            4556777889999999999998653 4579998741 11   11 0        112333322221   12357999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEE--EEEEEEec
Q psy16261         69 SKSDFGTYKCNAKNTLGGSEG--VIKVYNIG   97 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~   97 (158)
                      +.+|+|.|.|.+....+....  .+.|.|..
T Consensus        79 ~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~~  109 (115)
T d1ogad1          79 QPGDTGLYLCAGAGSQGNLIFGKGTKLSVKP  109 (115)
T ss_dssp             CGGGCEEEEEEEECTTSSEEECCCEEEEEEC
T ss_pred             CccceeeEcccccCCCCCcEECCCEEEEEec
Confidence            999999999988755433211  35666653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.45  E-value=7.8e-07  Score=53.57  Aligned_cols=76  Identities=18%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ++..|..+.+.+|+++.|.|..... ....+.|++.. +.   .+.         ...++...... +    ...|.|.+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-~----~~~L~I~~   78 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-T----DFTLTISR   78 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-T----EEEEEESS
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-C----EEEEEehH
Confidence            4456777889999999999997654 24468898651 11   111         11344443322 1    34799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|+|.|.|.+..
T Consensus        79 ~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          79 LEPEDFAVYYCQQYG   93 (108)
T ss_dssp             CCGGGCSEEEEEECS
T ss_pred             heecccEEEeeecCC
Confidence            999999999997654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=6.5e-07  Score=53.75  Aligned_cols=75  Identities=17%  Similarity=0.323  Sum_probs=51.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++.+ ..+.+.+|+++.|.|...+.....+.|++.. +   +.+.         ...++...... +    ...|.|.++
T Consensus         4 ltQp-~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~----~~~L~I~~~   77 (106)
T d1lk3l1           4 LTQP-PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-T----DFTLTIDPV   77 (106)
T ss_dssp             EECC-SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEEESSC
T ss_pred             EeeC-CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC-C----EEEeEECCc
Confidence            3444 4688999999999999987666789998641 1   1111         11344444332 1    247999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|+|.|.|.+..
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          78 EADDTAIYFCQQSW   91 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ChhhCCCccccccc
Confidence            99999999996543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.44  E-value=5.6e-07  Score=53.75  Aligned_cols=75  Identities=17%  Similarity=0.412  Sum_probs=50.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +.++ .+.+.+|+.+.|.|.........+.|++.. +.   .+.         ...++...... +    ...|.|.+++
T Consensus         3 tQp~-sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~L~I~~l~   76 (103)
T d8faba1           3 TQPP-SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-T----TVTLTISGVQ   76 (103)
T ss_dssp             BCCS-EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-T----EEEEEETTCC
T ss_pred             CCCC-eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC-C----ccCceEcCcc
Confidence            3444 677899999999999876666689998641 11   111         11334333322 1    2479999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+...
T Consensus        77 ~~Dsa~YyCA~~~~   90 (103)
T d8faba1          77 AEDEADYYCQAWDN   90 (103)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhHCceEEeeecCC
Confidence            99999999976643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.3e-06  Score=50.55  Aligned_cols=77  Identities=18%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee---e-e--------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL---I-H--------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~---~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .++.+...+|+.+.|.|......  ...+.|++.. +..   + .        ...++.+......   ...+|.|.+++
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~l~   78 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDA---GFFTVTMTDLR   78 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTT---TEEEEEECSCC
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCC---CEEEEEEhhhC
Confidence            35678889999999999875433  3357898641 111   1 1        1134444332211   23579999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy16261         70 KSDFGTYKCNAKNTL   84 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~   84 (158)
                      .+|+|.|.|.+....
T Consensus        79 ~~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          79 EEDSGHYWCRIYRPS   93 (108)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             CCCCEEEEEEEecCC
Confidence            999999999887543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.42  E-value=1.1e-06  Score=52.47  Aligned_cols=75  Identities=19%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+++.|.|.... ....+.|++.. +.   .+.         ...++......     ....|.|.++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~L~I~~~   76 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG-----TSYSLTISSM   76 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEESSC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCC-----CEEEEEeccc
Confidence            456688888999999999998744 35578998752 11   111         01233333222     1347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|++.|.|.+..
T Consensus        77 ~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          77 ETEDAATYYCQQWG   90 (104)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCCeEEEEecC
Confidence            99999999996543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5.8e-07  Score=54.18  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             EecCCCEEEEeEEee-cCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         11 ARLAAPLTLDCHVES-YPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      +.+|+.+.|.|.+.+ .|.+  .+.|+++ +..+....... .......+...+.|.+.-...++...|+|.|++..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g-~~~~~~~~~~~-~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKG-DHLMKSQEFLE-DADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEET-TEEEEEEECCS-CCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEecc-Cceeecccccc-ccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            578999999999976 5644  5889998 76654211000 0011122333456776644444455799999988654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=1.1e-06  Score=52.97  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=51.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---c------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---E------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---~------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..|..+.+.+|+.+.|.|.........+.|++.. +.   .+.   .      ..++........   ....|.|.++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~   78 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKRE---KKLSLHIADS   78 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGG---GEEEEEESSC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCC---CeeEeEeccC
Confidence            445566777899999999999876655679998641 11   111   0      112222222111   1347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          79 QPGDSATYFCAASA   92 (110)
T ss_dssp             CTTSCSEEEECCEE
T ss_pred             CCCCceeEeeeecC
Confidence            99999999998763

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=1.1e-06  Score=53.06  Aligned_cols=75  Identities=21%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ++..|..+.+.+|+.+.|.|.........+.|++.. +.   .+. .        ..++...... .    ...|.|.++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~-~----~~~L~I~~~   78 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-T----QFSLKINSL   78 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEEESSC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC-C----EEEEEEccc
Confidence            344577788899999999999876666789999741 21   111 1        1344443322 1    247999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16261         69 SKSDFGTYKCNAK   81 (158)
Q Consensus        69 ~~~d~G~Y~C~a~   81 (158)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~DSa~YyCA~~   91 (109)
T d1mqkl_          79 LPEDFGSYYCQHH   91 (109)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCeeEEEeee
Confidence            9999999999765

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=1.4e-06  Score=52.60  Aligned_cols=75  Identities=11%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             CceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF   73 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~   73 (158)
                      |..+.+.+|+++.|.|..... ....+.|++.. +.   .+.       ...+........   .....|.|.+++.+|+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITED---RKSSTLILPHATLRDT   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTT---CSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeeccc---CCeeeehhcccccCCc
Confidence            446789999999999997653 34568998741 21   111       011222222111   1235799999999999


Q ss_pred             eEEEEEEEcC
Q psy16261         74 GTYKCNAKNT   83 (158)
Q Consensus        74 G~Y~C~a~n~   83 (158)
                      |.|.|.+...
T Consensus        82 a~YyCa~~~~   91 (110)
T d2esvd1          82 AVYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEEeCC
Confidence            9999987643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.36  E-value=2.8e-06  Score=51.56  Aligned_cols=74  Identities=19%  Similarity=0.291  Sum_probs=50.3

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCCC----eeee---------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHENG----SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      +.++ .+.+.+|+++.|.|.+.+..  ...+.|++...    +.+.         ...++...... +    ...|.|.+
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~----~~~L~I~~   78 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG-T----SASLAISG   78 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET-T----EEEEEESS
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC-C----eeeeEecc
Confidence            3444 67889999999999987653  45799986521    1111         11344443322 1    34799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|++.|.|.+..
T Consensus        79 v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          79 LESEDEADYYCAAWN   93 (114)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCcccCceEEEeecC
Confidence            999999999998764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.36  E-value=3.5e-06  Score=50.87  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec----CCCeeEEEcCC-Ce---e-ee--------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY----PKPITFWTHEN-GS---L-IH--------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~----p~p~i~W~~~~-~~---~-~~--------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++..|..+.+.+|+++.|.|.....    ....+.|++.. +.   . +.        ...++...... +    ...|.
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~-~----~~~L~   78 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG-T----DFTLN   78 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-T----EEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC-C----chhcc
Confidence            3455777889999999999987542    12358898741 11   1 11        11355444332 1    24799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|++.|.|.+...
T Consensus        79 I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             cccccccCCceEEEEECCC
Confidence            9999999999999976544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.33  E-value=2.6e-06  Score=49.85  Aligned_cols=67  Identities=30%  Similarity=0.463  Sum_probs=45.2

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCC-Ce---eee--------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHEN-GS---LIH--------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |+.+.|.|.........+.|++.. +.   .+.        ..+++........   ...+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~---~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKAS---QYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTT---TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCC---CEEeEEeeccccCcCccceeeEe
Confidence            789999999888777889998731 21   111        1134433322211   13479999999999999999876


Q ss_pred             cC
Q psy16261         82 NT   83 (158)
Q Consensus        82 n~   83 (158)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            53

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.5e-07  Score=53.49  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             eEEEecCCCEEEEeEEeecCC----CeeEEEcCCCeeee--cC----------CeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261          8 LIGARLAAPLTLDCHVESYPK----PITFWTHENGSLIH--EG----------SRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~----p~i~W~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      .+....|+.+.|.|.......    -.+.|.++ ...+.  ..          .+......  +..    +|.|.+++.+
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~-~~~v~~~~~~~~~~~~~~~~r~~~~~~--g~~----sL~I~~v~~~   75 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDIT--NNL----SIVILALRPS   75 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEEST--TTT----EEEECSCCGG
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEec-ceEEEEEEeccceeecceeeeeeeccC--CcE----EEEECcCChH
Confidence            356789999999998754222    26778877 54331  11          22222211  223    7999999999


Q ss_pred             CCeEEEEEEEcCCCce
Q psy16261         72 DFGTYKCNAKNTLGGS   87 (158)
Q Consensus        72 d~G~Y~C~a~n~~g~~   87 (158)
                      |+|.|.|.+.+..+..
T Consensus        76 D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          76 DEGTYECVVLKYEKDA   91 (105)
T ss_dssp             GCEEEEEEEEECCTTS
T ss_pred             HCeEEEEEEEeCCCCC
Confidence            9999999998654433

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.8e-07  Score=53.62  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC---C-e-e--ee------------cCCeEEEEEeecccceEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN---G-S-L--IH------------EGSRYHMWTEKFSSYKFYM   61 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~---~-~-~--~~------------~~~~~~~~~~~~~~~~~~~   61 (158)
                      ++..|..+.+.+|+++.|.|...+.. ...+.|++..   + . .  +.            ...++...... +    ..
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~-~----~~   77 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG-D----TF   77 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET-T----EE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC-C----Ch
Confidence            34566677788999999999986643 4578998741   1 1 1  10            01244444332 1    24


Q ss_pred             EEEEcCCCCCCCeEEEEEEEc
Q psy16261         62 RLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        62 ~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             hcEEccCCCCCCEEEeEeEcC
Confidence            699999999999999998764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.31  E-value=4.3e-06  Score=50.32  Aligned_cols=76  Identities=18%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee-c-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH-E-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~-~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|..+.+.+|+++.|.|...+ ....+.|++.. +..   +. .           ..++........    ...|.|
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I   78 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQE----QFSLIL   78 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETT----EEEEEE
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCC----EEEEEE
Confidence            455577777899999999998765 45689999741 111   10 0           012222222111    247999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy16261         66 GSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n   82 (158)
                      .+++.+|+|.|.|.+..
T Consensus        79 ~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          79 ESATPSQTSVYFCASGG   95 (110)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             CCCCHhhCEEEEEeeCC
Confidence            99999999999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.31  E-value=6.8e-06  Score=49.67  Aligned_cols=81  Identities=21%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce-e---eec-C-----CeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS-L---IHE-G-----SRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~-~---~~~-~-----~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      |...|..+.+.+|+.+.|.|.... ....+.|++.. +. +   +.. .     ...... .. ......+.|.|.+++.
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~L~I~~~~~   80 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSA-FD-SERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEE-CC-SSSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceE-Ee-ecCCceeEEEECCCCH
Confidence            445577778999999999999865 35679998741 11 1   111 1     111100 00 1111245799999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy16261         71 SDFGTYKCNAKNTLG   85 (158)
Q Consensus        71 ~d~G~Y~C~a~n~~g   85 (158)
                      +|+|.|.|.+....+
T Consensus        81 ~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          81 EDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hHCEEEEEEecCCCC
Confidence            999999998876544

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.30  E-value=2.3e-06  Score=51.52  Aligned_cols=72  Identities=14%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             ceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCCCCCC
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF   73 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~   73 (158)
                      ..+.+.+|+++.|.|.........+.|++.. ++   .+.         ...++......     ....|.|.+++.+|+
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~l~~~Ds   82 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG-----NMATLTISRVEAGDE   82 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEESSCCGGGC
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC-----CccceEEeeeccCCC
Confidence            4678899999999999766555689998641 11   111         11344333332     134799999999999


Q ss_pred             eEEEEEEEcC
Q psy16261         74 GTYKCNAKNT   83 (158)
Q Consensus        74 G~Y~C~a~n~   83 (158)
                      +.|.|.+...
T Consensus        83 avYyCA~~~~   92 (109)
T d1w72l1          83 ADYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEecCC
Confidence            9999987654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.30  E-value=5.1e-06  Score=50.30  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++..|..+.+.+|+.+.|.|...+..     ...+.|++.. +.   .+.         ...++......     ....|
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-----~~~~L   79 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-----TDFTL   79 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS-----SEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC-----CcccC
Confidence            44557778899999999999986532     2468998641 11   111         01344443322     23479


Q ss_pred             EEcCCCCCCCeEEEEEEEcC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|.+++.+|++.|.|...+.
T Consensus        80 ~I~~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          80 KISRVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             ccCCCCcccCEEEEEEECCC
Confidence            99999999999999965543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.4e-06  Score=50.54  Aligned_cols=71  Identities=23%  Similarity=0.428  Sum_probs=42.5

Q ss_pred             eEEEecCCCEEEEeEEeecCCC---e--eEEEcCCCeeee---cC--------CeE--EEEEeecccceEEEEEEEcCCC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP---I--TFWTHENGSLIH---EG--------SRY--HMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p---~--i~W~~~~~~~~~---~~--------~~~--~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+..|+++.|.|.....+..   .  ..|.++....+.   .+        +++  +..... +.    .+|.|.+++
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~-~~----~sL~I~~v~   77 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS-DS----WTLRLHNLQ   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET-TT----TEEEECSCC
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccC-Ce----EEEEECCCC
Confidence            4567889999999998643322   2  334444232221   00        111  111111 12    269999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|+|.|.|.+...
T Consensus        78 ~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          78 IKDKGLYQCIIHHK   91 (110)
T ss_dssp             GGGCEEEEEEEEEE
T ss_pred             hhHCEEEEEEEEec
Confidence            99999999998644

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-06  Score=52.29  Aligned_cols=77  Identities=14%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             ecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-C---eeee-c-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          4 IPSQLIGARLAAPLTLDCHVESY--PKPITFWTHEN-G---SLIH-E-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         4 ~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~---~~~~-~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ++.+.+.+.+|+++.|.|...+.  ....+.|++.. +   ..+. .           .+|+.+.....   .....|.|
T Consensus         4 ~pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~Lti   80 (113)
T d1smoa_           4 LTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHD---HGLLRVRM   80 (113)
T ss_dssp             ESEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETT---TTEEEEEE
T ss_pred             eccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECC---CCEEEEEE
Confidence            44555677899999999998643  44578898641 1   1111 0           12444433221   11247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+...
T Consensus        81 ~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          81 VNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             CSCCGGGCEEEEEEECCT
T ss_pred             ccCCcccCceEEEEEECC
Confidence            999999999999987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.29  E-value=2.7e-06  Score=51.28  Aligned_cols=79  Identities=18%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |+..+..+.+.+|+.+.|.|.........+.|++.. ++   .+.         ...++.........   ...|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~---~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEAT---SFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTT---BCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCC---EEeeeecCc
Confidence            455677778999999999999876556689998741 21   111         01233333222111   236999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          80 QESDSAVYYCALSGG   94 (110)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CcCCCcccceeecCC
Confidence            999999999987653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.29  E-value=5e-06  Score=50.22  Aligned_cols=75  Identities=16%  Similarity=0.331  Sum_probs=49.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec-----CCCeeEEEcCC-Ce---e-eec--------CCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY-----PKPITFWTHEN-GS---L-IHE--------GSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~-~~---~-~~~--------~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++..|..+.+.+|+++.|.|...+.     ....+.|++.. +.   . +..        ..++......     ....|
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~-----~~~~L   78 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG-----TAFTL   78 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS-----SEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC-----CEEEE
Confidence            3455777888999999999998653     24478998641 11   1 111        1244443322     13479


Q ss_pred             EEcCCCCCCCeEEEEEEE
Q psy16261         64 YIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~   81 (158)
                      .|.+++.+|++.|.|...
T Consensus        79 ~Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          79 RISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             EESSCCGGGCEEEEEEEC
T ss_pred             EECCccccCCceEEEEeC
Confidence            999999999999999543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.29  E-value=2.8e-06  Score=51.50  Aligned_cols=75  Identities=17%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec------CCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY------PKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~------p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      ++..|..+.+.+|+++.|.|...+.      ....+.|++.. +.   .+.         ...++...... .    ...
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~-~----~~~   78 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-T----DFT   78 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-T----EEE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCC-C----eEe
Confidence            4456777889999999999987542      12358898741 11   111         11344333222 1    246


Q ss_pred             EEEcCCCCCCCeEEEEEEE
Q psy16261         63 LYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |.|.+++.+|+|.|.|.+.
T Consensus        79 L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          79 LTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEESSCCGGGCEEEEEEEC
T ss_pred             EEecccccCCCeEEEeccc
Confidence            9999999999999999764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.28  E-value=9.9e-06  Score=48.73  Aligned_cols=76  Identities=17%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-------------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |+..|..+.+.+|+++.|.|...+ ....+.|++.. +.   .+.             ...++...... +.   .+.|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~---~~~L~   76 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTG-GT---YSTLK   76 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTT-SS---SEEEE
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCC-CC---EEEEE
Confidence            456677777999999999998654 35689998651 11   110             01233322221 11   24799


Q ss_pred             EcCCCCCCCeEEEEEEEc
Q psy16261         65 IGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.+++.+|+|.|.|.+..
T Consensus        77 i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          77 VQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             ESSCCGGGCEEEEEEEES
T ss_pred             ECCcccCCCceEEEeeeC
Confidence            999999999999997654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.27  E-value=6.2e-06  Score=49.83  Aligned_cols=77  Identities=17%  Similarity=0.345  Sum_probs=50.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC-----CCeeEEEcCC-Cee---ee-------c--CCeEEEEEeecccceEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP-----KPITFWTHEN-GSL---IH-------E--GSRYHMWTEKFSSYKFYMRL   63 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p-----~p~i~W~~~~-~~~---~~-------~--~~~~~~~~~~~~~~~~~~~l   63 (158)
                      ++..|..+.+.+|+++.|.|...+..     ...+.|++.. +..   +.       .  ..++.....+ +    ...|
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~-~----~~~L   78 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG-T----DFTL   78 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-T----EEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC-C----EEEE
Confidence            34557778899999999999875432     3468898541 211   11       0  1344433322 1    2369


Q ss_pred             EEcCCCCCCCeEEEEEEEcC
Q psy16261         64 YIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        64 ~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .|.+++.+|++.|.|...+.
T Consensus        79 ~I~~~~~eDsAvYYC~~~~~   98 (112)
T d1ncwl1          79 KISRVEAEDLGVYYCWQGTH   98 (112)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             EECccccCcCEeEEEEcCCC
Confidence            99999999999999965443

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=5.2e-07  Score=54.30  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+++.|.|.........+.|++.. +..   +.         ...++...... +    ...|.|.+++
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~----~~~L~I~~~~   79 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG-T----DYSLTISNLE   79 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET-T----EEEEECSCCC
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC-C----EEEEEEeEee
Confidence            34566677899999999999877666679998641 111   11         01233332222 1    2479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          80 PEDIATYFCQHHI   92 (107)
T ss_dssp             SCCCSEEEEEECS
T ss_pred             ecCCCcEEeeeCC
Confidence            9999999997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=4.2e-06  Score=50.44  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCC---CeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPK---PITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~---p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ++.++ .+.+.+|+++.|.|...+...   ..+.|++.. ++.   +.         ...|+...... +    .+.|.|
T Consensus         4 ~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~-~----~~~L~I   77 (110)
T d1oaql_           4 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-N----KAALTI   77 (110)
T ss_dssp             EEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-T----EEEEEE
T ss_pred             EeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc-c----ceeeec
Confidence            34454 677899999999999975432   248898631 111   11         12455554433 1    247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          78 TGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             ESCCGGGCEEEEEEEEET
T ss_pred             CCCCccccEeEEEEcccC
Confidence            999999999999987653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.5e-06  Score=49.90  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..|+.+.|.|.+.|.-+.  .++|.++ +..+...........+++.|...+.|.+.   ..+.+.|+|.+....
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~n-g~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKN-GERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEET-TEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEEC-CEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCC
Confidence            357889999999996433  7889999 77765433333444554567666777765   455668999998763

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.24  E-value=6e-06  Score=49.74  Aligned_cols=75  Identities=19%  Similarity=0.264  Sum_probs=50.6

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      |..+.+.+|+++.|.|...+..  ...+.|++.. +..+.            ...++........   ....|.|.+++.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~l~~   83 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSS---NSASLTISGLKT   83 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTT---TEEEEEECSCCG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCC---CccccccccCCc
Confidence            5678899999999999987643  2358898641 11110            1134544433211   135799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy16261         71 SDFGTYKCNAKNT   83 (158)
Q Consensus        71 ~d~G~Y~C~a~n~   83 (158)
                      +|++.|.|.+.+.
T Consensus        84 ~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          84 EDEADYYCQSYDA   96 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCcEEEEeeccC
Confidence            9999999987653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.24  E-value=3.1e-06  Score=51.09  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=50.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeec----CCCeeEEEcCC-Ce---eee-c--------CCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESY----PKPITFWTHEN-GS---LIH-E--------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~----p~p~i~W~~~~-~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++..|..+.+.+|+.+.|.|.....    ....+.|++.. +.   .+. .        ..++......     ....|.
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~-----~~~~L~   78 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-----TDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-----SEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC-----CEEEEE
Confidence            3455777778899999999987432    23358898741 21   111 1        1234333222     235799


Q ss_pred             EcCCCCCCCeEEEEEEEcC
Q psy16261         65 IGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.+++.+|+|.|.|.+.+.
T Consensus        79 I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          79 IDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             EcccccccCccEEEeecCC
Confidence            9999999999999976543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.22  E-value=9e-06  Score=49.70  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-C---eeeec---------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-G---SLIHE---------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~---~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...++.+.+.+|+++.|.|...+..  ...+.|++.. +   +.+..         ..|+........   ....|.|.+
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~---~~~~L~i~~   81 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAK---NLAVLKILA   81 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGG---TEEEEEESS
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccc---cceeccccc
Confidence            4466778899999999999997654  3578998631 1   11111         135554443211   135799999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy16261         68 LSKSDFGTYKCNAKNT   83 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n~   83 (158)
                      ++.+|+|.|.|.....
T Consensus        82 ~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          82 PSERDEGSYYCACDTL   97 (120)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             ccccCCceeecCcccC
Confidence            9999999999976543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.22  E-value=3.8e-06  Score=50.69  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      |..+.+.+|+++.|.|...+.-  ...+.|++.. +.   .+.         ...++...... +    ...|.|.+++.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-~----~~~L~I~~~~~   81 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG-T----SATLGITGLQT   81 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-T----EEEEEESSCCG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC-C----EeeeEEeeecc
Confidence            4478899999999999986543  3469998541 11   111         11344444332 1    24799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy16261         71 SDFGTYKCNAKNT   83 (158)
Q Consensus        71 ~d~G~Y~C~a~n~   83 (158)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          82 GDEADYYCGTWDS   94 (111)
T ss_dssp             GGCSEEEEEEEET
T ss_pred             ccCcceEEeecCC
Confidence            9999999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=1.9e-06  Score=52.80  Aligned_cols=75  Identities=25%  Similarity=0.356  Sum_probs=50.7

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-C---eeee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-G---SLIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~---~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      +..|..+.+.+|+.+.|.|...+.-...+.|++.. +   ..+.         ...++...... .    ...|.|.+++
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~-~----~~~L~I~~~~   79 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG-T----DYTLTISSLQ   79 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB-T----EEEEEECSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCC-C----EEEEEcccCc
Confidence            34566777889999999999876555679998741 1   1111         11344333222 1    2479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|+|.|.|.+..
T Consensus        80 ~~DsavYyCa~~~   92 (119)
T d1f3rb2          80 PEDVATYFCYQYN   92 (119)
T ss_dssp             GGGCSEEEEEEES
T ss_pred             cCCCeEEEeeccC
Confidence            9999999997654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=2.5e-05  Score=47.03  Aligned_cols=77  Identities=22%  Similarity=0.362  Sum_probs=49.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---e-ec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---I-HE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~-~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|..+.+.+|+++.|.|.... ....+.|++.. +..   + ..           ..++........    ...|.|
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~i   77 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKE----RFSLIL   77 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTT----BCEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCc----EeeeEe
Confidence            455677777899999999998643 35688998741 111   1 00           012222221111    136999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          78 ESASTNQTSMYLCASSST   95 (113)
T ss_dssp             SSCCGGGCEEEEEEEECT
T ss_pred             ccCccCCcccEEeeEccC
Confidence            999999999999987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.9e-06  Score=50.75  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +++.+..+ +..|++|+|.|.......-.+.|+|+ +...... + . . ..     ..+.+.|.+++..|+|.|.|...
T Consensus         8 Lsa~P~~~-V~~G~~VTL~C~~~~~~~~~f~L~k~-g~~~~~~-~-~-~-~~-----~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2           8 LSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKE-GELSLPQ-H-Q-S-GE-----HPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             EEESSCSE-ECTTCCCEEEEECSSSCCSEEEEEET-TCSSCCS-E-E-E-CS-----SSEEEECCSCCGGGCEEEEEEEE
T ss_pred             EEEeCCCc-cCCCCeEEEEEeCCCCCceEEEEEEC-CcccceE-E-c-C-CC-----cccEEEEeccccccCcEEEEEEE
Confidence            34455544 88999999999864334446778898 5432111 1 1 1 11     11369999999999999999876


Q ss_pred             cC
Q psy16261         82 NT   83 (158)
Q Consensus        82 n~   83 (158)
                      ..
T Consensus        77 ~~   78 (96)
T d1ucta2          77 YN   78 (96)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=1.1e-05  Score=48.70  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee---e------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI---H------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|..+.+.+|+.+.|.|...+ ....+.|++.. ++.+   .            ...++........    ...|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I   76 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNS----RSEMNV   76 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTS----CEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCC----eeEEEE
Confidence            455577777999999999998654 35689998731 2111   0            0122222221111    247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|++.|.|.+...
T Consensus        77 ~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          77 STLELGDSALYLCASSLA   94 (113)
T ss_dssp             CSCCGGGCEEEEEEEESS
T ss_pred             CCCCcccceeeeeeeeCC
Confidence            999999999999987643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=9.4e-06  Score=49.06  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---cC---------CeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---EG---------SRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---~~---------~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|..+.+.+|+++.|.|... .....+.|++.. +..   +.   ..         .++........    ...|.|
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I   76 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKE----SFPLTV   76 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTT----BCCEEE
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCC----eEEEEE
Confidence            55667778899999999999975 345689998652 111   10   00         11111111111    236999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|++.|.|.+...
T Consensus        77 ~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          77 TSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CSCCSCCCEEEEEEEESS
T ss_pred             CcCCcCCceeEEEeeccC
Confidence            999999999999977644

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.13  E-value=3.1e-05  Score=47.18  Aligned_cols=78  Identities=17%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-C---eee-e------------cCCeEEEEEeecccceEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-G---SLI-H------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~---~~~-~------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      +..++..+...+|+++.|.|.+.+..  ...+.|++.. +   +.+ .            ...++........   ....
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~---~~~~   80 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSA---STSI   80 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTT---TEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccc---cccc
Confidence            34456677788999999999987643  3568998741 1   111 1            0124433322211   1246


Q ss_pred             EEEcCCCCCCCeEEEEEEEc
Q psy16261         63 LYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.|.+++.+|++.|.|...-
T Consensus        81 L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          81 LTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccceeEEEEEcC
Confidence            99999999999999997653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.12  E-value=9.3e-06  Score=48.95  Aligned_cols=74  Identities=18%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             CceEEEecCCCEEEEeEEeecC---CCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP---KPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      |..+.+.+|+++.|.|...+..   ...+.|++.. +.   .+.         ...++...... +    ...|.|.+++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~----~~~L~I~~l~   81 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG-N----SASLTISGLQ   81 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-T----EEEEEECSCC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC-C----EeeEEeCcCc
Confidence            5677899999999999987642   3468998741 11   111         11344333322 1    3479999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy16261         70 KSDFGTYKCNAKNTL   84 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~~   84 (158)
                      .+|++.|.|.+.+..
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          82 AEDEADYYCSSYDGS   96 (112)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccCEEEEEeeecCC
Confidence            999999999876543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.7e-05  Score=46.74  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=48.1

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .|+.+.|.|.+.|.-+.  .++|+++ +..+............++.|...+.|.+.   ..+.+.|+|.+....
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~-g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKN-GKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDS   86 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEET-TEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeC-CeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCC
Confidence            57789999999996433  7889999 77665544444445555667767777764   345568999998753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=8.5e-06  Score=49.12  Aligned_cols=75  Identities=11%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             cCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-Cee---ee-------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-GSL---IH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      .|..+.+.+|+++.|.|...+.. ...+.|++.. +..   +.       ...+.+.....+   .....|.|.+++.+|
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED---RKSSTLILHRATLRD   80 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT---SSEEEEEESSCCGGG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc---CCeeEEEEeeccccc
Confidence            45567899999999999986644 4468998741 211   11       011112222221   123479999999999


Q ss_pred             CeEEEEEEEc
Q psy16261         73 FGTYKCNAKN   82 (158)
Q Consensus        73 ~G~Y~C~a~n   82 (158)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (112)
T d1kgcd1          81 AAVYYCILPL   90 (112)
T ss_dssp             CEEEEEECCC
T ss_pred             ceeEeeeEec
Confidence            9999997654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.11  E-value=8.8e-06  Score=48.79  Aligned_cols=72  Identities=15%  Similarity=0.309  Sum_probs=49.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee---------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      |..+.+.+|+++.|.|.........+.|++.. +..   +.         ...|+...... .    ...|.|.+++.+|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-~----~~~L~I~~l~~~D   80 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-T----TATLTISGAQPED   80 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-T----EEEEEETTCCGGG
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-C----EeeeeEcCccccC
Confidence            45678999999999998765555578998741 221   11         01355544332 1    2479999999999


Q ss_pred             CeEEEEEEEc
Q psy16261         73 FGTYKCNAKN   82 (158)
Q Consensus        73 ~G~Y~C~a~n   82 (158)
                      +|.|.|.+..
T Consensus        81 sa~YyCA~~~   90 (108)
T d1nfde1          81 EAAYYCLSSY   90 (108)
T ss_dssp             CSEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.09  E-value=4e-05  Score=46.92  Aligned_cols=77  Identities=21%  Similarity=0.353  Sum_probs=51.1

Q ss_pred             eecCceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce---ee-e-------------cCCeEEEEEeecccceEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GS---LI-H-------------EGSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~---~~-~-------------~~~~~~~~~~~~~~~~~~~~   62 (158)
                      ..++..+...+|+++.|.|.+.|..  ...+.|++.. ++   .+ .             ...|+.+.......   ...
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~---~~~   81 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETS---TST   81 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTT---EEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeecccc---cee
Confidence            3455567788999999999998753  4478898641 11   11 0             11355555432111   246


Q ss_pred             EEEcCCCCCCCeEEEEEEEc
Q psy16261         63 LYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.|.+++.+|++.|.|....
T Consensus        82 L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          82 LTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccccccCcEEEEeeeC
Confidence            99999999999999998653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=1e-05  Score=48.69  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee-------------cCCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH-------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~-------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |+..|..+.+.+|+++.|.|.... ....+.|++.. ++   .+.             ...++...... .   ..+.|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~L~   76 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPE-G---SVSTLK   76 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT-S---SCEEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCc-C---CEEEEE
Confidence            455677777899999999998643 45689998741 11   110             01223222111 1   124799


Q ss_pred             EcCCCCCCCeEEEEEEEc
Q psy16261         65 IGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.+++.+|+|.|.|.+.-
T Consensus        77 I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          77 IQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             ESSCCGGGCEEEEEEEES
T ss_pred             ECCCCcCCCEEEEEeeeC
Confidence            999999999999998753

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.03  E-value=7.3e-05  Score=44.24  Aligned_cols=70  Identities=14%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..|+...|.|.+.|.-++  .+.|.++ +..+............++.|...+.|.+..   ++...|+|.+....-
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~n-g~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDH-SVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEET-TEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEEC-CeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCC
Confidence            468888999999995443  7889999 776544444444455556687778887754   344569999998743

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2.3e-05  Score=46.90  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             CceEEEecCCCEEEEeEEeec---C---CCeeEEEcCCC---eee-e----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESY---P---KPITFWTHENG---SLI-H----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~---p---~p~i~W~~~~~---~~~-~----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |..+.+.+|+.|.|.|.....   +   .-.+.|++...   ..+ .          ...|+.+.....   ...++|.|
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I   83 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMD---HKVCNLLL   83 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGG---GTBCCEEE
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCc---CCEEEEEE
Confidence            457889999999999998531   1   12455765411   111 1          123444432211   12346999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+...
T Consensus        84 ~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC
T ss_pred             CCCChhHCEEEEEEEEeC
Confidence            999999999999998754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.1e-06  Score=49.45  Aligned_cols=75  Identities=13%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             CceEEEecCCCEEEEeEEeecC-------CCeeEEEcCCCee-----e-e-c---------CCeEEEEEeecccceEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP-------KPITFWTHENGSL-----I-H-E---------GSRYHMWTEKFSSYKFYMR   62 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p-------~p~i~W~~~~~~~-----~-~-~---------~~~~~~~~~~~~~~~~~~~   62 (158)
                      +..+.+.+|+.|.|.|......       ...+.|++.....     + . .         .+|+.+.....   ...++
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQ---TKNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGG---GTBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCc---CCEEE
Confidence            4567899999999999984221       1256787652110     0 0 0         13444433211   11347


Q ss_pred             EEEcCCCCCCCeEEEEEEEcC
Q psy16261         63 LYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        63 l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      |.|.+++.+|+|.|.|.+...
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEET
T ss_pred             EEECCCChHHCEEEEEEEEeC
Confidence            999999999999999998753

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=2.8e-05  Score=46.70  Aligned_cols=76  Identities=14%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee------ecC---------CeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI------HEG---------SRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~------~~~---------~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|....+.+|+++.|.|.... ....+.|++.. ++.+      ...         .++........    ...|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I   76 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTE----DFPLRL   76 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSS----BCCEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCC----EEEEEE
Confidence            566677777999999999998754 35689998741 2111      001         11111111101    136999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy16261         66 GSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n   82 (158)
                      .++..+|++.|.|.+..
T Consensus        77 ~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          77 LSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SSCCGGGCEEEEEEEEC
T ss_pred             CCCCHHHCEEEEEeecC
Confidence            99999999999997754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=47.61  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      +..+.|.|.+.+. |.. .+.|+++ +..+............++.|...+.|.|..-.-.....|+|.+.....
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLED-GQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEET-TEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEEC-CEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            3468899999994 444 6889999 777665433333334445677777888866443334569999998743

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=1.3e-05  Score=48.38  Aligned_cols=77  Identities=18%  Similarity=0.286  Sum_probs=49.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---ee---ec---------CCeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LI---HE---------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~---~~---------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |+..|..+.+.+|+.+.|.|..... ...+.|++.. +.   .+   ..         ..++...... +   ....|.|
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~L~I   78 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD-D---YHSEMNM   78 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECT-T---SCEEEEC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCC-C---CeEEEEe
Confidence            4455667778999999999986543 4689998752 11   11   00         0122221111 0   1247999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|+|.|.|.+...
T Consensus        79 ~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          79 SALELEDSAMYFCASSLR   96 (113)
T ss_dssp             CSCCGGGCEEECEEEESS
T ss_pred             cccCcCCceeEEEEeecC
Confidence            999999999999987643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=5.2e-05  Score=45.45  Aligned_cols=74  Identities=15%  Similarity=0.311  Sum_probs=49.3

Q ss_pred             ceEEEecCCCEEEEeEEeec--CCCeeEEEcCC-Ce----eeec-----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          7 QLIGARLAAPLTLDCHVESY--PKPITFWTHEN-GS----LIHE-----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~-~~----~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      +.+.+.+|+++.|.|...+.  ....+.|.+.. +.    .+..           .+|+.+.....   .....|.|.++
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~---~~~~~lti~~L   79 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS---EAMLQVQMTDL   79 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGG---GTEEEEEECSC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECC---CCEEEEEECcc
Confidence            45668899999999998764  45578898741 21    1111           12444443221   12346999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.....
T Consensus        80 ~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          80 QVTDSGLYRCVIYHP   94 (110)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCCEEEEEEEeCC
Confidence            999999999987544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.98  E-value=5.5e-05  Score=44.39  Aligned_cols=69  Identities=19%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             cCCCEEEEeEEeecCC--CeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESYPK--PITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .++.+.|.|.+.|.-+  ..++|.++ +..+..+ ........++..|...+.|.+.   ..+...|+|.+.....
T Consensus        16 ~~~~~tL~C~~~gFyP~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          16 TREPVMLACYVWGFYPAEVTITWRKN-GKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SSCSEEEEEEEEEEBSSCCEEEEEET-TEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEEC-CEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCC
Confidence            4677899999999633  37889999 7766443 2223344444567777777775   3445579999998643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.3e-05  Score=42.95  Aligned_cols=69  Identities=14%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..|+.+.|.|.+.|.-+.  .+.|.++ +..+............++.|...+.|.+.   ..+...|+|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~n-g~~~~~~~~~~~~~~~~~t~~~~s~l~~~---~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRA-GEVQEPELRGDVLHNGNGTYQSWVVVAVP---PQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEET-TEECCCSEEEEEEETTTTEEEEEEEEEEC---TTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEEC-CEECCCcEEeeeecCCCCeEEEEEEeEeC---CCCCCEEEEEEEECC
Confidence            357899999999995433  7889999 77665443444444544556666666664   445567999998763

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.9e-06  Score=48.60  Aligned_cols=68  Identities=16%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      +.+.|..+ +..|++|+|.|.... +...+.++|+ +....    .......     ..+.+.|.+++..|+|.|.|...
T Consensus         7 Lsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~Ke-g~~~~----~~~~~~~-----~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           7 LSVHPGPE-VISGEKVTFYCRLDT-ATSMFLLLKE-GRSSH----VQRGYGK-----VQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEEESCSE-EETTCEEEEEEECSS-SCSEEEEEEE-SSSCE----EEEEECS-----SEEEEEEEECCGGGCEEEEEECE
T ss_pred             EEEeCCCc-ccCCCcEEEEECCCC-CCCEEEEEEC-CCccc----eeecCCC-----ceeEEEecccChhcCceEEEEeE
Confidence            34455554 789999999999743 4557778887 43211    1111111     13479999999999999999643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.96  E-value=3.9e-05  Score=45.22  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             EecCCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESYPK--PITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +..|+...|.|.+.|.-+  ..++|+++ |..+..+... .....+++.|...+.|.+..   .+.+.|+|.+....
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~n-g~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRN-SKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEES-SSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeC-CeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            346888999999999643  47889999 7666543111 12334445676667777653   45667999998763

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.93  E-value=3.7e-05  Score=45.42  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=47.0

Q ss_pred             ecCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..|+...|.|.+.|. |.. .++|+++ |..+..+. .......+++.|...+.|.+..   .+...|+|.+....
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRN-GRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEET-TEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEEC-CeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            357778999999996 433 7889999 87765431 1123334445677777888764   33457999998763

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=2e-05  Score=47.35  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=49.6

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ce---eee---cC---------CeEEEEEeecccceEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GS---LIH---EG---------SRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~---~~~---~~---------~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      |...|..+.+.+|+.+.|.|.... ....+.|++.. +.   .+.   ..         .++.......    ....|.|
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~i   75 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRT----EHFPLTL   75 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSS----SBCCEEB
T ss_pred             CEECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCC----CceEeee
Confidence            345566677899999999999753 35689998741 11   110   00         1111111110    1236999


Q ss_pred             cCCCCCCCeEEEEEEEcCCC
Q psy16261         66 GSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .+++.+|++.|.|.+....+
T Consensus        76 ~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          76 ESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             SSCCTTTCSEEEEEEECSSS
T ss_pred             ccccccccccEEEEEecCCC
Confidence            99999999999998765433

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.6e-05  Score=43.65  Aligned_cols=69  Identities=14%  Similarity=0.332  Sum_probs=47.0

Q ss_pred             EecCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         11 ARLAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ...++.+.|.|.+.|. |.. .++|+++ |+.+...  ........++..|...+.|.+..   .+...|+|.+...
T Consensus        12 ~~~~~~~tL~C~~~gFyP~~i~v~W~~d-g~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~---~~~~~ytC~V~H~   84 (94)
T d1de4a1          12 HVTSSVTTLRCRALNYYPQNITMKWLKD-KQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP---GEEQRYTCQVEHP   84 (94)
T ss_dssp             EECSSCEEEEEEEEEEBSSCCEEEEEET-TEECCGGGSCCCEEEECTTSCEEEEEEEEECT---TCGGGEEEEEECT
T ss_pred             cCCCCCEEEEEEEeeEECCCCEEEEEEC-CEECccCcccccceEeCCCceEEEEEEEEECC---CCCCEEEEEEEeC
Confidence            4457789999999994 544 8899999 7776432  22233444445666666676654   4566799999886

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=6.3e-05  Score=45.42  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=46.2

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC---eeEEEcCC-Cee---ee---c-------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP---ITFWTHEN-GSL---IH---E-------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~-~~~---~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .|..+.+.+|+.+.|.|........   .+.|++.. ++.   +.   .       .+++.......+   ....|.|.+
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~   81 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNE---SRVNLTIQG   81 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEET---TEEEEEECS
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCC---CEEEEEhhc
Confidence            3566778899999999998654333   47798741 211   10   0       011111111101   134799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|+|.|.|.+..
T Consensus        82 l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          82 LRAVDTGLYLCKVEL   96 (117)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CccccCEeEEEEEec
Confidence            999999999998764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.88  E-value=7e-05  Score=44.91  Aligned_cols=75  Identities=13%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Cee---ee-c------------CCeEEEEEeecccceEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSL---IH-E------------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~---~~-~------------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      |+..|..+.+.+|+.+.|.|...+.-...+.|++.. ++.   +. .            ..++......  .    ..|.
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~----~~l~   77 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT--D----TELR   77 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE--T----TEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccc--c----cEEE
Confidence            555666777889999999999877666789998752 211   11 0            1122222111  1    2578


Q ss_pred             EcCCCCCCCeEEEEEEEc
Q psy16261         65 IGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.....+|++.|.|.+..
T Consensus        78 l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          78 LQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EEEESCCSCEEEEEEEES
T ss_pred             EecCCccCCccEEEEEec
Confidence            888889999999998654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.87  E-value=7.5e-05  Score=43.60  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK   81 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~   81 (158)
                      |...|..+ +..|.+++|.|.... ....+.++|+ +.............    .....+.+.|.+++..|+|.|.|.-.
T Consensus         5 Lsa~P~~~-V~~G~~VTl~C~~~~-~~~~f~L~ke-g~~~~~~~~~~~~~----~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           5 LLAHPGPL-VKSEETVILQCWSDV-MFEHFLLHRE-GMFNDTLRLIGEHH----DGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             EEEESCSE-EETTCCEEEEEEESS-CCSEEEEEEE-SSSCEEEEEECEEE----TTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEeeCCCc-cCCCCcEEEEECCCC-CCCEEEEEEC-CCcCCceeeeeeec----CCceEEEEEEcccCcccCeEEEEEEE
Confidence            34455444 789999999999743 3456667777 32111000000000    11123469999999999999999875


Q ss_pred             cC
Q psy16261         82 NT   83 (158)
Q Consensus        82 n~   83 (158)
                      ..
T Consensus        78 ~~   79 (96)
T d1nkra1          78 VT   79 (96)
T ss_dssp             BT
T ss_pred             cC
Confidence            43

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=0.00021  Score=40.25  Aligned_cols=85  Identities=21%  Similarity=0.361  Sum_probs=56.3

Q ss_pred             EEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeec---C-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261          9 IGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHE---G-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..|+...|.|.+.= --.|.++|-|-+++....   + .+.......+ .. ..-.|.+.-+..+|.|.|.|.|.-.
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~-ni-s~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENR-SV-PVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSS-SS-CEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcC-Ce-eEEEEEeeeeeecCCCceEEecCCC
Confidence            35778999999999854 347899997754543322   2 2333333332 21 1236999999999999999999876


Q ss_pred             CCce-EEEEEEEE
Q psy16261         84 LGGS-EGVIKVYN   95 (158)
Q Consensus        84 ~g~~-~~~~~l~v   95 (158)
                      .+.. +.++++.|
T Consensus        91 s~vieSHSvti~V  103 (104)
T d1xaua_          91 SQVINSHSVTIHV  103 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             hhheecceEEEEe
Confidence            6554 44555544

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00013  Score=43.22  Aligned_cols=78  Identities=12%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCC--CCCeEEEEEEEcCCCceE
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK--SDFGTYKCNAKNTLGGSE   88 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~--~d~G~Y~C~a~n~~g~~~   88 (158)
                      ..+.+.|.|.+.|. |.. .++|.++ +...............++.|...+.|.+..-.=  .....|+|.+....+...
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~-~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYK-NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEET-TSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEEC-CccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            35779999999995 433 7889998 554433211111112235666677787765432  223479999998866555


Q ss_pred             EEE
Q psy16261         89 GVI   91 (158)
Q Consensus        89 ~~~   91 (158)
                      ..+
T Consensus        99 ~~v  101 (105)
T d1dn0b2          99 KNV  101 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            444

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.83  E-value=7.5e-05  Score=43.84  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..++...|.|.+.|.-+.  .++|+++ |..+..+. .......+++.|...+.|.+..   .+...|+|.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSN-GQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEET-TEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEEC-CEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeC
Confidence            357788999999997433  7889999 77765432 1222344445677667777764   3445799999875

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.1e-05  Score=43.59  Aligned_cols=75  Identities=16%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      +++.+..+ +..|++|+|.|.... ....+..+|+ +......... .....    ....+.+.|.+++..|+|.|.|.-
T Consensus         7 Lsa~P~~~-v~~G~~VTL~C~~~~-~~~~f~L~k~-g~~~~~~~~~~~~~~~----~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           7 LSAQPSPV-VNSGGNVTLQCDSQV-AFDGFILCKE-GEDEHPQCLNSQPHAR----GSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             EEEESCSE-EETTCCEEEEEECSS-CCSEEEEEEC-------CEEEC----------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             EEeeCCCc-cCCCCcEEEEeCCCC-CCCEEEEEEC-CCcCCcEeeeeEEcCC----CceEEEEEeeecccCCCeEEEEee
Confidence            34555554 889999999998643 2345556666 4322111000 00000    011246999999999999999987


Q ss_pred             EcC
Q psy16261         81 KNT   83 (158)
Q Consensus        81 ~n~   83 (158)
                      ...
T Consensus        80 ~~~   82 (98)
T d1ugna2          80 YDS   82 (98)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            544

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.7e-05  Score=43.44  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             CceEEEecCCCEEEEeEEeecCCCeeE-EEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ++.+.+.+|+.+.+.|.+.. |...++ |...++..+..+..+......        -++|.+++..+.|.|.|.|... 
T Consensus        12 p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~--------Gf~I~~~~~~~~g~y~C~a~~~-   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRK--------GFIISNATYKEIGLLTCEATVN-   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTT--------EEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCC--------CEEEeCCCcccCeEEEEEEEEC-
Confidence            45678999999999999975 555543 666633343344444444433        5999999999999999999765 


Q ss_pred             CceEEEEE
Q psy16261         85 GGSEGVIK   92 (158)
Q Consensus        85 g~~~~~~~   92 (158)
                      |....+..
T Consensus        82 g~~~~S~y   89 (95)
T d1fltx_          82 GHLYKTNY   89 (95)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            33333333

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.80  E-value=5.3e-05  Score=44.50  Aligned_cols=72  Identities=14%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      .+.|..+ +..|++|+|.|.... +...+.|+|+ +......  ....... .   ....+.|..+...|+|.|.|.-..
T Consensus        10 sa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~-g~~~~~~--~~~~~~~-~---~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          10 SAQPGPT-VLAGENVTLSCSSRS-SYDMYHLSRE-GEAHERR--LPAGPKV-N---GTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             EEESCSE-ECTTCEEEEEEEESS-CCSEEEEEET-TCSSCEE--EECEEEE-T---TEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             EEeCCCc-ccCCCeEEEEECCCC-CccEEEEEEC-CCccccE--EEccccC-C---ccEEEEEeccccccCEEEEEEeec
Confidence            3444443 788999999998643 4557778888 5322111  0000100 0   012467777888899999997654


Q ss_pred             C
Q psy16261         83 T   83 (158)
Q Consensus        83 ~   83 (158)
                      .
T Consensus        81 ~   81 (99)
T d1nkra2          81 H   81 (99)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=0.00015  Score=41.84  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.|.|.+.|. |.. .++|.++ +..+.. .........++.|...+.|.+..   .+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~n-g~~~~~-~~~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRN-GLASGS-GNCSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEET-TEECCC-CEEEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEEC-CEeCCc-cCccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCC
Confidence            35578999999995 443 7889999 766543 34445555556787778888763   45567999998753

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.74  E-value=3.1e-05  Score=45.30  Aligned_cols=67  Identities=18%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +..+.|.|.+.|. |.. .++|+++ +...............++.|...+.|.+..   .|...|+|.+....
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~-~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRG-EQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEET-TEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEEC-cccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            4579999999995 444 7889998 765543322233445556677777788764   34557999998753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=1e-06  Score=51.90  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             EEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261          9 IGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT   75 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~   75 (158)
                      +.+.+|+.+.|.|.... ....+.|++.. +..+.            ..+|+........   ....|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSK---KSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGG---TBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcc---eecccCcCCCCcccCEE
Confidence            45678999999998754 34579998741 11110            1133333221111   12369999999999999


Q ss_pred             EEEEEEcCCCc
Q psy16261         76 YKCNAKNTLGG   86 (158)
Q Consensus        76 Y~C~a~n~~g~   86 (158)
                      |.|.+....|.
T Consensus        79 YyCA~~~~~g~   89 (96)
T d1ymmd1          79 YFCATDTTSGT   89 (96)
T ss_dssp             CEEEEEETTSC
T ss_pred             EeEeEecCCCC
Confidence            99987765443

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.2e-05  Score=43.40  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261          3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA   80 (158)
Q Consensus         3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   80 (158)
                      ...|..+ +..|++|+|.|... .+...+..+|+ +....  .........        .+.+.|.+++..|+|.|.|..
T Consensus         8 sa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~ke-g~~~~~~~~~~~~~~~--------~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           8 WAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYRE-KKTAPWITRIPQELVK--------KGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             EEESCSE-EETTCCEEEEEECC-TTCCCEEEEES-SSCCHHHHTSCHHHHT--------TTEEEESSCCGGGCEEEEEEE
T ss_pred             EeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEEC-CCCcccEEEccCCCCC--------EEEEEEEecCHHHCCeEEEEE
Confidence            4445544 78999999999963 34445666777 43211  000000000        126999999999999999986


Q ss_pred             Ec
Q psy16261         81 KN   82 (158)
Q Consensus        81 ~n   82 (158)
                      ..
T Consensus        77 ~~   78 (96)
T d1ugna1          77 GS   78 (96)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7e-05  Score=44.17  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=46.3

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +..+.|.|.+.|.-+.  .+.|.++ |..+..+.. .......++.|...+.|.|..-.-.....|+|.+....
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~-g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVD-GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEEC-CEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5578999999996433  7889999 776654321 11223333567777788886544344567999998764

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.7e-05  Score=45.71  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC---eeEEEcCC-Cee---ee----cC------CeEEEEEeecccceEEEEEEEcCC
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP---ITFWTHEN-GSL---IH----EG------SRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~-~~~---~~----~~------~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      |..+.+.+|+.+.|.|.......+   .+.|++.. ++.   +.    ..      .+.....   ..-...+.|.|.++
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~l   82 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTG---TSSGNQVNLTIQGL   82 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCC---CBCSSEEEEEECSC
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeE---cCCCCEEEEEeecc
Confidence            556678899999999998554333   58898752 111   10    00      0000000   01112457999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy16261         69 SKSDFGTYKCNAKNT   83 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~   83 (158)
                      +.+|+|.|.|.+...
T Consensus        83 ~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          83 RAMDTGLYICKVELM   97 (118)
T ss_dssp             CGGGCEEEEEEEEEE
T ss_pred             ccCCCEEEEEeEecc
Confidence            999999999987653

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.67  E-value=8.7e-05  Score=43.45  Aligned_cols=68  Identities=15%  Similarity=0.183  Sum_probs=41.4

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .++...|.|.+.|.-++  .++|+++ +..+..+... .....+++.|...+.|.+   ...+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgtf~~~s~l~~---~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRN-GQEEKTGVVSTGLIQNGDWTFQTLVMLET---VPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEET-TEECCSSEEECCCEECSSSCEEEEEEEEC---CCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEEC-CEEcCCCCEECeEEeCCCcEEEEEEEeeE---cCCCCCEEEEEEEECC
Confidence            45667899999995444  7889999 7666443111 122334345655555544   4566778999998764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.65  E-value=9.3e-05  Score=43.24  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=42.6

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ..++...|.|.+.|.-+.  .++|.++ +..+..+... .....+++.|...+.|.+.   ..+...|+|.+....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRN-DQEETAGVVSTPLIRNGDWTFQILVMLEMT---PQRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEET-TEEECTTEEECCCEECSSSCEEEEEEEECC---SCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEEC-CEEcCCCcEeceeecCCCceEEEEEEeccC---CCCCCEEEEEEEeCC
Confidence            346677899999996543  7889999 7665544211 2233444567666667663   445568999998764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0003  Score=42.36  Aligned_cols=72  Identities=10%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             EEEecCCCEEEEeEEeecCCC--ee-EEEcCCCee---ee------------cCCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--IT-FWTHENGSL---IH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i-~W~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      ..+.+|+.+.|.|...+....  .+ .|++..+..   +.            ...++........   ...+|.|.+++.
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~   86 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN---ESVTFYLQNLYV   86 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECS---SEEEEEEESCCG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCC---CeEEEEECCCCc
Confidence            346789999999998765433  23 355442211   10            1122333322211   134799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy16261         71 SDFGTYKCNAKNT   83 (158)
Q Consensus        71 ~d~G~Y~C~a~n~   83 (158)
                      +|+|.|.|.+...
T Consensus        87 ~DsavYyCa~~~~   99 (118)
T d1yjdc1          87 NQTDIYFCKIEVM   99 (118)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             ccCeEEEEEEecc
Confidence            9999999976543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00018  Score=41.24  Aligned_cols=68  Identities=12%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..++.+.|.|.+.|..+.  .++|.++ ++.+..+... .....+++.|...+.|.+..-   +...|+|.+...
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLN-GEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEET-TEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEEC-CEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEEC
Confidence            346689999999996544  6789999 8776654322 234445466766777777643   334699998765

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=4.4e-05  Score=45.05  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=45.6

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ++.+.|.|.+.|.-+.  .+.|.++ +..+..+... ......++.|...+.|.+..-.-.....|+|.+....
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKAD-SSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEEC-CEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6779999999995433  6889999 7766543221 1223333567777778875443222346999998864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00051  Score=37.93  Aligned_cols=60  Identities=17%  Similarity=0.337  Sum_probs=41.3

Q ss_pred             EecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         11 ARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ...|..+.|.|.....+.+  .-+|.|+ ++.+.....- ...         ..+.|..  .+++|.|.|++...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~-gkvl~ed~~~-~~~---------tey~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALP-GQK---------TEFKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCC-CSE---------EEEEECG--GGCCEEEEEEEEST
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeC-CEEccccCCC-CCc---------eEEEEec--CCCCceEEEEEcCC
Confidence            3568889999999876554  4559999 9888765211 101         1355554  77899999997643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.9e-05  Score=44.77  Aligned_cols=72  Identities=17%  Similarity=0.292  Sum_probs=46.6

Q ss_pred             cCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .++.+.|.|.+.+. |. ..+.|+++ +..+......  ......++.|...+.|.|..-.-.....|+|.+.....
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHN-EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEET-TEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEEC-CEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            46679999999995 43 38889999 7765443211  12233335677777788765433444569999987644

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.54  E-value=0.00041  Score=41.65  Aligned_cols=71  Identities=23%  Similarity=0.323  Sum_probs=46.7

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+.+.|.|.+.|...  -.+.|.+.. ++.      +.           ...|+.+.......   +..|.|
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~---tvyL~~   83 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSAS---TAYLQI   83 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCce---eEEeee
Confidence            33345789999999999988653  367786531 111      11           12466665433222   236999


Q ss_pred             cCCCCCCCeEEEEE
Q psy16261         66 GSLSKSDFGTYKCN   79 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~   79 (158)
                      .+++.+|++.|.|.
T Consensus        84 ~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          84 NSLKNEDTATYFCA   97 (118)
T ss_dssp             CSCCGGGCEEEEEE
T ss_pred             eecccCcceEEEEe
Confidence            99999999999994

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.49  E-value=0.00069  Score=40.80  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      -.+.+|+++.|.|.+.|....  .+.|++.. ++.+      ..          ..|+.+.......   +..|.|.+++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~---~~~L~i~~L~   85 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKN---TAYLQMDSLK   85 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTT---EEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCc---ceecccccCC
Confidence            347889999999999886543  57787641 1111      10          1356665433211   2369999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|+..|.|....
T Consensus        86 ~eDtA~YYCAr~~   98 (119)
T d1kxvc_          86 PDDTAMYYCKPSL   98 (119)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCcceEeeeecc
Confidence            9999999996544

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00053  Score=41.08  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+++.|.|.+.|....  .+.|.+.. ++.      +.           ...|+.+.......   +..|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~n---t~yL~m~~   85 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKN---TAYLQMNS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccc---eEEecccc
Confidence            3457889999999999986533  67786541 110      11           12456665543222   23699999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          86 LRAEDTAVYYCARDT  100 (117)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCceEEEEeecC
Confidence            999999999996543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.49  E-value=0.0003  Score=41.68  Aligned_cols=73  Identities=16%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      ..+..+.|.|.+.|.-+.  .+.|+++ +..+............++.|...+.|.+..-.-  ...|+|.+.......
T Consensus        22 ~~~~~~~l~Clv~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          22 KLQKAGTYLCLLEKFFPDVIKIHWEEK-KSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNKN   96 (107)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEES-SSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSGG
T ss_pred             ccCCcEEEEEEEeEEeCCceEEEEEEC-CeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCCC
Confidence            346789999999996444  6889998 665544322222223335566667777754332  225999998764433

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=5.8e-05  Score=44.50  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .++.+.|.|.+.|. |.. .++|+++ +...............++.|...+.|.+..-.-...-.|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEET-TEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEEC-CEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            35678999999995 433 7889999 76543221112223333567777778876543333446999998763

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.47  E-value=0.00051  Score=41.43  Aligned_cols=68  Identities=21%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec----------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE----------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. ++.      +..          ..|+.+.......   +..|.|.+++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~n---t~~L~i~~l~~   87 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKN---QFSLKLSSVTA   87 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTT---EEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchh---eeccccccccc
Confidence            47789999999999986544  67787641 111      111          2466666543222   23599999999


Q ss_pred             CCCeEEEEEE
Q psy16261         71 SDFGTYKCNA   80 (158)
Q Consensus        71 ~d~G~Y~C~a   80 (158)
                      +|++.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999943

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=0.00055  Score=41.05  Aligned_cols=69  Identities=23%  Similarity=0.383  Sum_probs=46.4

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e--------c--CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H--------E--GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~--------~--~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. |+.+      .        .  ..|+.+.......   +..|.|.+++.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n---~~~L~~~sL~~   87 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKS---QVFLKMNSLQT   87 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTT---EEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccc---eeecccccccc
Confidence            47889999999999986543  67787541 1111      1        1  2466665533211   23699999999


Q ss_pred             CCCeEEEEEEE
Q psy16261         71 SDFGTYKCNAK   81 (158)
Q Consensus        71 ~d~G~Y~C~a~   81 (158)
                      +|.+.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.44  E-value=0.00065  Score=40.79  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=47.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+++.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+.......   +..|.|
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~---t~~L~~   83 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSS---TAYMEL   83 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcc---eEeecc
Confidence            344457899999999999986644  67787541 111      110           1355555432211   236999


Q ss_pred             cCCCCCCCeEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNA   80 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a   80 (158)
                      .+++.+|.+.|.|..
T Consensus        84 ~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          84 ARLTSEDSAIYYCAR   98 (118)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccccCcceeeeEEE
Confidence            999999999999943

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00096  Score=39.98  Aligned_cols=75  Identities=17%  Similarity=0.288  Sum_probs=48.6

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+++.|.|.+.|...  -.+.|++.. ++.      +.           ...|+.+.......   +..|.|
T Consensus         7 sg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~---t~~L~i   83 (117)
T d1iqdb1           7 SGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTN---IAYMEL   83 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccc---eEEEee
Confidence            33445788999999999988643  357787631 111      11           12455555433211   235999


Q ss_pred             cCCCCCCCeEEEEEEEcC
Q psy16261         66 GSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+++.+|++.|.|.....
T Consensus        84 ~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          84 SSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CSCCGGGCEEEEEEECSS
T ss_pred             cccCcCcceEEEEeEcCC
Confidence            999999999999976543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.42  E-value=3.1e-05  Score=45.78  Aligned_cols=71  Identities=20%  Similarity=0.319  Sum_probs=43.7

Q ss_pred             cCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .++.+.|.|.+.|. |. ..+.|.++ |...............++.|...+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNN-GKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEET-TEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEEC-CEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36679999999995 43 37889999 65432221111222333556667778775443223446999998753

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00064  Score=40.71  Aligned_cols=69  Identities=20%  Similarity=0.310  Sum_probs=44.8

Q ss_pred             EEEecCCCEEEEeEEeecC--CCeeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYP--KPITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.. ++.      +.           ...|+.+.......   +..|.|.++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~---t~~L~i~~l   86 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSS---TAFMHLNSL   86 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTT---EEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCce---eeEeeeeec
Confidence            3478899999999998754  3367786531 111      11           01355554432111   235999999


Q ss_pred             CCCCCeEEEEEE
Q psy16261         69 SKSDFGTYKCNA   80 (158)
Q Consensus        69 ~~~d~G~Y~C~a   80 (158)
                      +.+|...|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999953

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=6.8e-05  Score=44.15  Aligned_cols=69  Identities=16%  Similarity=0.320  Sum_probs=44.8

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+.+.|.|.+.|. |.. .+.|.++ +..+............++.|...+.|.+..-.-.....|+|.+...
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWN-GQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET-TEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEEC-CEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            5578999999995 433 7889999 7655332221223334456777778887643323345699999875

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.39  E-value=0.0014  Score=39.46  Aligned_cols=72  Identities=15%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             eEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Ceee------e-----------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSLI------H-----------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+.+.|.|.+.|...  ..+.|++.. |+.+      .           ...|+.+.......   +..|.|.+
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n---~v~L~i~~   85 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSST---TAYIELVR   85 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcc---eEEccccc
Confidence            345788999999999987653  367887541 2211      1           11355554433211   23699999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|++.|.|....
T Consensus        86 l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          86 LTSNDSAVYYCARED  100 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEeeecC
Confidence            999999999997643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.39  E-value=0.0009  Score=40.05  Aligned_cols=70  Identities=20%  Similarity=0.336  Sum_probs=46.4

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e--------c--CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H--------E--GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~--------~--~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+.+|+.+.|.|.+.|....  .+.|++.. |+.+      .        .  ..|+.+.......   +..|.|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n---~~~L~~~~l~~   87 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKS---QVFLKMNSLHT   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGT---EEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCc---eEEcceeeeee
Confidence            47889999999999986544  57787541 1111      1        0  1355555433211   23699999999


Q ss_pred             CCCeEEEEEEEc
Q psy16261         71 SDFGTYKCNAKN   82 (158)
Q Consensus        71 ~d~G~Y~C~a~n   82 (158)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999997543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.38  E-value=0.0012  Score=39.53  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e----------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H----------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~----------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      ..+.+|+++.|.|.+.|....  .+.|++.. ++.+      .          ...|+.+.......   +..|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~---~~~L~i~~L~   86 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKN---QFSLRLSSVT   86 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchh---hhhccccccc
Confidence            346789999999999986544  67787541 2111      1          12455555432111   2369999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|.+.|.|.....
T Consensus        87 ~eDtAvYyCAr~~~  100 (116)
T d7fabh1          87 AADTAVYYCARNLI  100 (116)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccceEEEeeeecC
Confidence            99999999965443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.0011  Score=39.67  Aligned_cols=74  Identities=19%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+.+.|.|.+.|....  .+.|++.. ++.      +.           ...|+.+.......   +..|.|
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~---t~~L~m   82 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSN---TAYLEL   82 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCce---eEeecc
Confidence            344557889999999999886543  67787541 111      11           11455555432211   235999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy16261         66 GSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n   82 (158)
                      .+++.+|+..|.|....
T Consensus        83 ~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          83 SSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccCCCcceEEEEeecc
Confidence            99999999999996443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.38  E-value=0.00081  Score=39.78  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=46.8

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H-------------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~-------------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      ...+.+|+++.|.|.+.|....  .+.|.+.. ++.+      .             ...|+.+.......   +..|.|
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~---t~~L~i   85 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQS---MLYLQM   85 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTT---EEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccc---eeEecc
Confidence            3457899999999999886543  67787531 1111      0             01366555432211   236999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNAK   81 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~   81 (158)
                      .+++.+|.+.|.|...
T Consensus        86 ~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cCCCHhHCEEEEEEEc
Confidence            9999999999999643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=3.4e-05  Score=45.56  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+.+.|.|.+.|.-+.  .+.|.++ +...............++.|...+.|.|..-.-.....|+|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET-TEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEEC-CeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            4678999999996444  7889999 6654321111122233355666677877664434445699999875

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.36  E-value=0.00071  Score=40.88  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             EEecCCCEEEEeEEeecCC----CeeEEEcCC-Ceeee----------------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHVESYPK----PITFWTHEN-GSLIH----------------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~----p~i~W~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+|+++.|.|.+.|...    ..+.|++.. ++.+.                ..+|+.+.......   ...|.|.++
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~---~~~L~i~~l   87 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKK---QVVLTLTNL   87 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTT---EEEEEEESC
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccc---eeeeeEEee
Confidence            4678999999999987532    368898641 11110                02355544322111   246999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|++.|.|....
T Consensus        88 ~~eDsAvYyCAr~~  101 (120)
T d2agjh1          88 DPVDTATYYCARTS  101 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eeccceEEeeEecC
Confidence            99999999996443

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.36  E-value=0.0019  Score=38.74  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=47.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      .....+.+|+++.|.|.+.|...  -.+.|.+.. |+.      +..           ..|+.+.......   +..|.|
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~---t~yL~i   83 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSS---TAYMQF   83 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccc---eEEecc
Confidence            34455788999999999988553  367786531 111      111           1355555433221   236999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNAK   81 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~   81 (158)
                      .+++.+|.+.|.|...
T Consensus        84 ~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          84 SSLTTEDSAIYYCARY   99 (118)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeee
Confidence            9999999999999653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.35  E-value=0.0014  Score=39.27  Aligned_cols=74  Identities=16%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+.+.|.|.+.|....  .+.|.+.. |+.      +.           ...|+.+......   .+..|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---nt~~L~~~sL   86 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAK---NSLYLQMSKV   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSS---CEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCcc---ceeecccccc
Confidence            457889999999999886544  57787431 111      11           1245555543221   2236999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy16261         69 SKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n~~g   85 (158)
                      +.+|.+.|.|......+
T Consensus        87 ~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          87 RSEDTALYYCARLHYYG  103 (118)
T ss_dssp             CGGGCEEEEEEEEETTT
T ss_pred             CCCcceEEEeeEecCCC
Confidence            99999999997655433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.0011  Score=38.96  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=40.9

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e-----------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H-----------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD   72 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d   72 (158)
                      +|+++.|.|.+.|....  .+.|++.. ++.+      .           ...|+.+......   .+..|.|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~---~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPS---STAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccc---cEEEeeeeeccccc
Confidence            48899999999986543  67887541 1111      1           1145555533211   12369999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy16261         73 FGTYKCNAKNTLG   85 (158)
Q Consensus        73 ~G~Y~C~a~n~~g   85 (158)
                      .+.|.|......+
T Consensus        78 TAvYYCAr~~~~~   90 (103)
T d1oari_          78 SAVYYCARMWYYG   90 (103)
T ss_dssp             CSEEEEEEEECSS
T ss_pred             cEEEEeEEECCCC
Confidence            9999997654443

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0009  Score=40.08  Aligned_cols=70  Identities=24%  Similarity=0.384  Sum_probs=46.4

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-c----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-E----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|++.. ++.      +. .          ..|+.+.......   +.-|.|.++
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~---t~yLq~~~L   86 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSS---IVYLQLNSL   86 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccc---eeeeccccc
Confidence            346789999999999986544  67787631 111      11 1          1466665433211   235999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16261         69 SKSDFGTYKCNAK   81 (158)
Q Consensus        69 ~~~d~G~Y~C~a~   81 (158)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0017  Score=38.93  Aligned_cols=73  Identities=18%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             cCceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Ceee------ec-----------CCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSLI------HE-----------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++....+.+|+++.|.|.+.|...  -.+.|.+.. ++.+      ..           ..|+.+.......   +..|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~---~~~L~   82 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTT---TAYME   82 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCcc---EeEee
Confidence            344455788999999999988543  367786531 2111      10           1255554432111   23699


Q ss_pred             EcCCCCCCCeEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNA   80 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a   80 (158)
                      |.+++.+|.+.|.|..
T Consensus        83 i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          83 LSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCcceEEEEec
Confidence            9999999999999954

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00056  Score=39.57  Aligned_cols=67  Identities=12%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+..+.|.|.+.|.-+.  .++|.++ +..+..+... .....++..+...+.|.+..   .+...|+|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~-g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRD-GEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEET-TEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEEC-CEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEEC
Confidence            35679999999997555  6789999 7766543222 22233334455555666643   3445799999875

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.32  E-value=0.0023  Score=38.56  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+.+.|.|.+.|....  .+.|++.. ++.      +..           ..|+.+.......   +..|.|.+++
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~n---t~~L~i~~L~   87 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKN---TLYLQMSSLK   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGT---EEEEEECSCC
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCccc---ccccceeeec
Confidence            47789999999999886533  57786531 111      110           1356565433211   2369999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy16261         70 KSDFGTYKCNAKNT   83 (158)
Q Consensus        70 ~~d~G~Y~C~a~n~   83 (158)
                      .+|.+.|.|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          88 SEDTAMYYCVRHEY  101 (123)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCcccceeEEecCC
Confidence            99999999976543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.0014  Score=39.16  Aligned_cols=73  Identities=19%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-c----------CCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-E----------GSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++....+.+|+++.|.|.+.|....  .+.|.+.. |+.      +. .          ..|+.+.......   +..|.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~---tvyL~   82 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSS---TAYMQ   82 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccc---eeEec
Confidence            4445568899999999999986543  67786531 111      11 1          1356555433211   23699


Q ss_pred             EcCCCCCCCeEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNA   80 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a   80 (158)
                      |.+++.+|.+.|.|..
T Consensus        83 ~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          83 LSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ccccCCCCceEEEEcc
Confidence            9999999999999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.0017  Score=39.02  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=47.0

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-c----------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-E----------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+++.|.|.+.|....  .+.|++.. ++.      +. .          ..|+.+.......   +..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~n---t~yLqm~s   85 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTD---TGYLELSS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCce---EEEeeeec
Confidence            3457889999999999986543  67786531 111      11 1          1366665533222   23599999


Q ss_pred             CCCCCCeEEEEEEE
Q psy16261         68 LSKSDFGTYKCNAK   81 (158)
Q Consensus        68 v~~~d~G~Y~C~a~   81 (158)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.30  E-value=1.5e-05  Score=47.36  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=43.5

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ++.+.|.|.+.|. |.. .+.|.++ +..+............++.|...+.|.+..-.-.+...|+|.+.....
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKAN-GATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEET-TEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEEC-CEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            5678999999995 433 7889999 776654322111122224455555666654333344579999988654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.29  E-value=0.00093  Score=39.84  Aligned_cols=68  Identities=16%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. |+.      +..           ..|+.+.......   +..|.|.+++
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~n---t~~L~~~~L~   87 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQN---NLYLQLNSLR   87 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccc---eeeeeeeeec
Confidence            47799999999999886533  67787541 111      111           1356565433211   2359999999


Q ss_pred             CCCCeEEEEEE
Q psy16261         70 KSDFGTYKCNA   80 (158)
Q Consensus        70 ~~d~G~Y~C~a   80 (158)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999953

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.0024  Score=38.49  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             CceEEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ceee------ec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYP--KPITFWTHEN-GSLI------HE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+.+.|.|.+.|..  .-.+.|++.. ++.+      ..           ..|+.+.......   +..|.|
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~---t~~L~i   83 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSN---TAYLQL   83 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCc---eeeecc
Confidence            3344578899999999998754  3367787541 2111      11           1355554432111   235999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy16261         66 GSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~n   82 (158)
                      .+++.+|++.|.|....
T Consensus        84 ~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          84 TSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             CSCCGGGCEEEEEEEEB
T ss_pred             cccCcCcceEEEeEeec
Confidence            99999999999996543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.0012  Score=39.72  Aligned_cols=70  Identities=17%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+++.|.|.+.|....  .+.|++.. ++.      +..           ..|+.+.......   +..|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~n---t~~L~~~s   85 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSS---TAYMQLNS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcc---eEEeeeec
Confidence            3457789999999999986533  67787531 111      111           1356555433222   23699999


Q ss_pred             CCCCCCeEEEEEE
Q psy16261         68 LSKSDFGTYKCNA   80 (158)
Q Consensus        68 v~~~d~G~Y~C~a   80 (158)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999953

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.29  E-value=0.0015  Score=39.55  Aligned_cols=69  Identities=19%  Similarity=0.394  Sum_probs=46.4

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+.......   +..|.|.+++
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~---t~yLq~~sL~   86 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKN---MAYLRMDSVK   86 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGT---EEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccc---eeeceecccc
Confidence            46789999999999986544  67787641 111      111           2456555443221   2369999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0011  Score=38.82  Aligned_cols=71  Identities=15%  Similarity=0.314  Sum_probs=45.1

Q ss_pred             cCCCEEEEeEEeec-CCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         13 LAAPLTLDCHVESY-PKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      .++.+.|.|.+.|. |..  .+.|.++ +...... .+......++.|...+.|.|..-.-.....|+|.+.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~-~~~~~~~-~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKS-GKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCC-CSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccC-CCcCcee-EeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            46789999999995 553  4568777 5443221 1112223335677777888877654455679999987543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00033  Score=41.50  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEE--EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHM--WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.|.|.+.|.-+.  .+.|.++ +..+........  ....++.|...+.|.|..-.-.....|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET-TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEEC-CEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999995333  7889999 776654321111  11222456667777776543233457999998754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.0019  Score=39.17  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             cCceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ++....+..|+++.|.|.+.|....  .+.|.+.. ++.      +.           ...|+.+.......   +..|.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~n---t~yL~   82 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN---TAYME   82 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGT---EEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCce---EEEEE
Confidence            3444557889999999999986533  57786531 111      11           12456666543222   23599


Q ss_pred             EcCCCCCCCeEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNA   80 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a   80 (158)
                      |.+++.+|.+.|.|.-
T Consensus        83 ~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          83 LRSLRSADTAVYYCAR   98 (127)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             EEccCCCCceEEEEEe
Confidence            9999999999999953

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.0021  Score=38.91  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+++.|.|.+.|....  .+.|.+.. ++.      +.           ...|+.+.......   +..|.|
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~n---t~yL~m   82 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSN---IAYMQL   82 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCcc---EEEeee
Confidence            334457889999999999986544  56786531 111      11           12455555432211   236999


Q ss_pred             cCCCCCCCeEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNA   80 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a   80 (158)
                      .+++.+|...|.|..
T Consensus        83 ~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          83 SSLTSEDSAVYYCAR   97 (126)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999964

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.25  E-value=0.00069  Score=39.07  Aligned_cols=66  Identities=12%  Similarity=0.398  Sum_probs=42.7

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      +..+.|.|.+.|. |.. .+.|.++ +..+..+...  .....++..|...+.|.+..   .+...|+|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQD-GVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET-TEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeEC-CeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEEC
Confidence            4568999999996 433 7889999 7766543221  22233434566666676653   3445699999865

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.25  E-value=0.0025  Score=38.36  Aligned_cols=73  Identities=16%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             ceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ....+.+|+++.|.|.+.|....  .+.|++.. |+.      +..           ..|+.+.......   +..|.|.
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~n---tvyL~~~   85 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSAT---TAYMGLS   85 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTT---EEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcc---eeeeccc
Confidence            33457899999999999886533  57787631 111      111           2455555433211   2259999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy16261         67 SLSKSDFGTYKCNAKN   82 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n   82 (158)
                      +++.+|.+.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999996553

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.21  E-value=0.0012  Score=39.63  Aligned_cols=69  Identities=22%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             EEecCCCEEEEeEEeecCCC---eeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP---ITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|....   .+.|.+.. ++.+      ..          ..|+.+.......   +..|.|.+++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~n---t~~L~~~sL~   87 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKN---QFFLQLNSVT   87 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccc---eeeccccccc
Confidence            47789999999999997653   46786531 2211      11          1355555432211   2369999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|...|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1ncwh1          88 TEDTATYYCAGL   99 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEeEe
Confidence            999999999644

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.21  E-value=0.0015  Score=39.62  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+++.|.|.+.|....  .+.|.+.. ++.      +.           ..+|+.+......+   +..|.|
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n---~vyL~l   83 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSN---TAFMYL   83 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcc---eEeeee
Confidence            344457889999999999886533  57776531 111      11           12455555433211   236999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNAK   81 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~   81 (158)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          84 NSLTSEDSAVYYCARE   99 (125)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCcccceEEEEeee
Confidence            9999999999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.20  E-value=0.0015  Score=39.33  Aligned_cols=69  Identities=17%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. |+.      +.           ...|+.+.......   +..|.|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~---~~~L~i~sL~   87 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKN---TLYLQMNSLR   87 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTT---EEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccce---eEEeeeeecc
Confidence            46789999999999885432  57786531 111      11           12366555533211   2369999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|.+.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d1ol0a_          88 AEDTAVYYCARE   99 (121)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEEEe
Confidence            999999999654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.20  E-value=0.0007  Score=39.97  Aligned_cols=67  Identities=19%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             EecCCCEEEEeEEeecC--CCeeEEEcCC-Cee------ee--------c--CCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261         11 ARLAAPLTLDCHVESYP--KPITFWTHEN-GSL------IH--------E--GSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~~------~~--------~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      +.+|+++.|.|.+.|..  .-.+.|++.. ++.      +.        .  ..|+.+.......   +..|.|.+++.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n---~~~L~i~~l~~e   81 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKK---TVYLEMNSLEPE   81 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTC---CEEEEECSCCGG
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCcee---EEEEeecCCCcc
Confidence            46799999999998753  3367787541 111      11        1  1466666533222   236999999999


Q ss_pred             CCeEEEEEE
Q psy16261         72 DFGTYKCNA   80 (158)
Q Consensus        72 d~G~Y~C~a   80 (158)
                      |.+.|.|..
T Consensus        82 DtAvYyCA~   90 (107)
T d1sjva_          82 DTAVYYCYT   90 (107)
T ss_dssp             GCSEEEEEE
T ss_pred             cceeeeEec
Confidence            999999954

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.20  E-value=0.0006  Score=39.71  Aligned_cols=66  Identities=14%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeec----CC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHE----GS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ...+.|.|.+.|.-+.  .+.|+++ +..+..    .. .......+++.|...+.|.+..   .+...|+|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~n-g~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKD-DGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEE-CSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEEC-CccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeC
Confidence            4478999999996555  6779998 543321    11 1122334446677667777753   3446799999754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.0026  Score=38.59  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC---------------Ceee-e--cCCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN---------------GSLI-H--EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~---------------~~~~-~--~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+++.|.|.+.|....  .+.|.+..               +... .  ...|+.+.......   +..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~---t~yL~~~s   85 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTS---TVYLELRN   85 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCc---eEEeeeee
Confidence            3457899999999999986644  46675431               1111 0  12466666543222   23699999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.19  E-value=0.0024  Score=38.69  Aligned_cols=71  Identities=18%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|++.. ++.      +.           ...|+.+.......   +..|.|.++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~n---t~~L~~~~L   86 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKN---SLYLQMNSL   86 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCc---EEEeeeeee
Confidence            347789999999999886533  67786541 111      11           12455555433211   235999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtavYYCAr~~  100 (126)
T d1dfbh1          87 RAEDMALYYCVKGR  100 (126)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcceEEEEEecc
Confidence            99999999996543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.0027  Score=38.68  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             ceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ....+.+|+.+.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+.......   +..|.|.
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~---tv~L~~~   83 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATS---TAYMELT   83 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEEC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCcc---EEEEEee
Confidence            33457899999999999886533  57787541 111      110           2366555433222   2369999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy16261         67 SLSKSDFGTYKCNAKN   82 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~n   82 (158)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999996543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.18  E-value=0.0025  Score=38.71  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             EEecCCCEEEEeEEeecCC----CeeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHVESYPK----PITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~----p~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+|+++.|.|.+.|...    -.+.|++.. ++.+      ..          .+|+.+.......   +..|.|.++
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~---t~~L~i~~l   87 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSN---QVFLKITSV   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTT---EEEEEECSC
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCc---EEEcceecc
Confidence            4678999999999987532    246687430 1111      01          1355555433211   236999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16261         69 SKSDFGTYKCNAK   81 (158)
Q Consensus        69 ~~~d~G~Y~C~a~   81 (158)
                      +.+|+..|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.18  E-value=0.002  Score=39.21  Aligned_cols=70  Identities=20%  Similarity=0.338  Sum_probs=46.1

Q ss_pred             EEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee---e---e----------------cCCeEEEEEeecccceEEEEEE
Q psy16261         10 GARLAAPLTLDCHVESYPK--PITFWTHEN-GSL---I---H----------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~---~---~----------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      .+.+|+++.|.|.+.|...  -.+.|++.. ++.   +   .                ...|+.+.......   +..|.
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~---~~~L~   87 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKN---TVNLQ   87 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGT---EEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCce---EEEEe
Confidence            4678999999999988643  367887541 111   1   0                01355555432221   23699


Q ss_pred             EcCCCCCCCeEEEEEEEc
Q psy16261         65 IGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~n   82 (158)
                      |.+++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999997643

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.16  E-value=0.002  Score=39.50  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             EEecCCCEEEEeEEeecCC----CeeEEEcCC-Ceee------e----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHVESYPK----PITFWTHEN-GSLI------H----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~----p~i~W~~~~-~~~~------~----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+|+++.|.|.+.|...    ..+.|++.. ++.+      .          ..+|+.+.......   +..|.|.++
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~---~~~L~i~~l   87 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKN---QVVLVMTRV   87 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceeccccccc---EEEcccccC
Confidence            4778999999999987542    258898541 1111      0          12455554432111   236999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|+..|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.16  E-value=0.0034  Score=37.81  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|++.. ++.      +.           ...|+.+.......   +.-|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~---t~yL~m~sL   86 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKN---TLFLQMTSL   86 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGT---EEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCcc---EeEeeeeee
Confidence            346789999999999986533  57787531 111      11           12466665433211   235999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999996544

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.16  E-value=0.00094  Score=40.25  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=46.2

Q ss_pred             EEecCCCEEEEeEEeecCC--C--eeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHVESYPK--P--ITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~--p--~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+|+++.|.|.+.|...  .  .+.|++.. ++.+      ..          ..|+.+.......   +..|.|.++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n---~~~L~~~sL   87 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLN---KFFIQLISV   87 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTT---EEEEEESSC
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccc---eeecceeee
Confidence            4778999999999998643  2  57787541 2211      11          1456555432211   236999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          88 TNEDTAMYYCSREN  101 (120)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             eccceeEEEEEecC
Confidence            99999999996543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.14  E-value=0.0032  Score=37.80  Aligned_cols=70  Identities=14%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             EEecCCCEEEEeEEeecCC--CeeEEEcCC-Ceee------e-------------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHVESYPK--PITFWTHEN-GSLI------H-------------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~~------~-------------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+.+|+++.|.|.+.|...  -.+.|++.. ++.+      .             ...|+.+.......   +..|.|.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n---~~~L~~~~   87 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKR---RVYLQMNT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTT---EEEEEECS
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccc---eeccceee
Confidence            4678999999999988643  367787531 2111      0             01356555432211   23599999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|.+.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999996543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.00062  Score=41.07  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|...  -.+.|++.. ++.      +..           ..|+.+.......   +..|.|.+++
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~---~~~L~i~~L~   87 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSS---TVYLEFSRLT   87 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTT---EEEEEEEEEC
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccc---eeeeeecccC
Confidence            4778999999999987542  357887541 211      111           1355555432111   2359999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|++.|.|...
T Consensus        88 ~eDsAvYYCA~~   99 (119)
T d1qnzh_          88 SDDSAVYYCAIH   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccceeEEEEEEe
Confidence            999999999543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.13  E-value=0.0025  Score=38.50  Aligned_cols=69  Identities=16%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEeEEeecCC----CeeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261         10 GARLAAPLTLDCHVESYPK----PITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~----p~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      .+.+|+++.|.|.+.|...    -.+.|++.. ++.+      ..          ..|+.+......   .+..|.|.++
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~---~~~~L~i~sl   87 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSN---NQAFLNMMTV   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGG---TEEEEEECSC
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccc---eeEEcceeec
Confidence            4678999999999987542    256787530 1111      11          135555443211   1236999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16261         69 SKSDFGTYKCNAK   81 (158)
Q Consensus        69 ~~~d~G~Y~C~a~   81 (158)
                      +.+|+..|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999643

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.13  E-value=0.00076  Score=40.66  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=44.3

Q ss_pred             cCCCEEEEeEEeec-CC---CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PK---PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.|.|.+.|. |.   -.+.|.++ +..+............++.|...+.|.|..-.=.....|+|.+....
T Consensus        31 ~~~~~~L~C~v~gf~P~~~~v~v~W~~~-g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          31 ISLSPIVTCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEET-TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             cCCceEEEEEeecccCCCCcEEEEEeeC-CcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            46789999999995 42   36789999 66554332222233333566666677654332223456999999753

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.12  E-value=0.0014  Score=39.43  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=45.5

Q ss_pred             EEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|...  -.+.|.+.. ++.      +..           ..|+.+......   .+..|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~yLq~~~L   86 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGK---NTVYLQMDSL   86 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTST---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCc---eEEEEEeeec
Confidence            34789999999999988643  367787541 111      111           135555543211   1235999999


Q ss_pred             CCCCCeEEEEEEE
Q psy16261         69 SKSDFGTYKCNAK   81 (158)
Q Consensus        69 ~~~d~G~Y~C~a~   81 (158)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d2p49b1          87 KPEDTATYYCAAG   99 (121)
T ss_dssp             CGGGCEEEEEEES
T ss_pred             cccceeEEeeecc
Confidence            9999999999653

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.12  E-value=0.0024  Score=39.00  Aligned_cols=70  Identities=17%  Similarity=0.351  Sum_probs=46.0

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. |+.      +..           .+|+.+.......   +..|.|.+++
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~---t~yL~i~~L~   87 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKN---TLYLQMNSLK   87 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTC---CEEEEEESCC
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCc---eeEecEeeeC
Confidence            47789999999999986533  57787531 111      111           2456555433211   2359999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999996544

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.0033  Score=37.98  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             CceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+..|+.+.|.|.+.|....  .+.|++.. ++.      +..           ..|+.+......   .+..|.|
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~---~t~yL~~   83 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRST---NTAHLQW   83 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTT---TEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCC---cEEEEee
Confidence            334457899999999999986543  57787531 111      111           245555543321   1236999


Q ss_pred             cCCCCCCCeEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNA   80 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a   80 (158)
                      .+++.+|...|.|..
T Consensus        84 ~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          84 SSLKPSDTALYYCAR   98 (124)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             eccccccceEEEEee
Confidence            999999999999954

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.0013  Score=38.51  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      .++.+.|.|.+.|.-+.  .+.|..+ +...  ..........++.|...+.|.|..-.- +.+.|+|.+.......
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~-~~~~--~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSG-SLSS--GVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGG-TBCT--TEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcC-CccC--CeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            46789999999995433  7889766 4321  111111112235677777788776654 3467999999865443

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00026  Score=41.96  Aligned_cols=71  Identities=14%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEE----E-EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYH----M-WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .++.+.|.|.+.+. |.. .+.|+++ +..+.......    . ...+++.|...+.|.|..-.-.....|+|.+....
T Consensus        19 ~~~~~tl~C~~~~f~P~~i~v~W~~~-g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          19 LNELVTLTCLARGFSPKDVLVRWLQG-SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEET-TEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCEEEEEEEC-CeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            46789999999996 433 7999999 77665432111    1 11223456666777765433223456999998753

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00056  Score=40.24  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             ecCCCEEEEeEEeec-CC---CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261         12 RLAAPLTLDCHVESY-PK---PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG   85 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g   85 (158)
                      ..++.+.|.|.+.|. |.   -.+.|.++ +..+............++.|...+.|.|..-.-.....|+|.+.....
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~-~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVD-GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEET-TEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeC-CeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            357789999999985 33   25678888 765543322222233335566666676654322234469999997643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00051  Score=40.21  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261         13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG   86 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~   86 (158)
                      .++.+.|.|.+.|. |.. .+.|.++ +...... .+. ....++.|...+.|.|..-.- +.+.|+|.+......
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~-~~~~~~~-~~~-~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEG-ALSSGVL-TVS-AVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGG-TCCTTEE-ECC-CEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecC-CCcccce-eee-eecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            46789999999995 433 7889877 5321100 000 111224566677788765543 357899999876443

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00037  Score=40.93  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             EecCCCEEEEeEEeec-CCC---eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         11 ARLAAPLTLDCHVESY-PKP---ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~-p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      +..+..+.|.|.+.|. |..   .+.|.++ +...............++.|...+.|.+..-.-.....|+|.+....
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~-~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRA-SGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEET-TCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCC-CceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4457789999999985 432   5567777 43332222222233333456666667654332223456999998753

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.09  E-value=0.0039  Score=37.26  Aligned_cols=71  Identities=15%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCCCC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSLSK   70 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~   70 (158)
                      .+.+|+.+.|.|.+.|....  .+.|.+.. ++.+      ..          ..|+.+......   .+..|.|.+++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~---nt~~L~i~~l~~   87 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVR---NILTLQMSRLRS   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTT---TEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccc---eeeeeccccccC
Confidence            46789999999999986543  67787541 1111      11          135555543221   123699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy16261         71 SDFGTYKCNAKNT   83 (158)
Q Consensus        71 ~d~G~Y~C~a~n~   83 (158)
                      +|.+.|.|.....
T Consensus        88 eDtA~YyCAr~~~  100 (118)
T d1lo4h1          88 EDTAIYYCARGTS  100 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEecccCC
Confidence            9999999965443

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.09  E-value=0.0031  Score=38.20  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|.+.. ++.      +.           ...|+.+.......   +..|.|.++
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~---t~yL~~~sL   86 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTS---TAYLELNSL   86 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccc---eEeeeeccc
Confidence            447789999999999986543  57787531 111      11           12455555433211   236999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.08  E-value=0.0019  Score=39.34  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             CceEEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEE
Q psy16261          6 SQLIGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYI   65 (158)
Q Consensus         6 ~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i   65 (158)
                      +....+.+|+++.|.|.+.|...  -.+.|.+.. ++.      +..           ..|+.+.......   +..|.|
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~---t~yL~~   83 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTS---TAYMEL   83 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccc---eEEeee
Confidence            33345788999999999988643  367787541 111      111           1355555432211   235999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy16261         66 GSLSKSDFGTYKCNAK   81 (158)
Q Consensus        66 ~~v~~~d~G~Y~C~a~   81 (158)
                      .+++.+|.+.|.|...
T Consensus        84 ~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          84 SSLRSEDTAVFYCASP   99 (130)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             eecCCCccEEEEEEEe
Confidence            9999999999999643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0018  Score=38.13  Aligned_cols=70  Identities=16%  Similarity=0.330  Sum_probs=44.2

Q ss_pred             CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEE--eecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWT--EKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      ...+.|.|.+.|. |.. .++|.++ +..+..........  ..++.|...+.|.|..-.-.....|+|.+....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVD-NALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEEC-CEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5679999999995 433 7889999 76554332211111  122456777788876543233347999998864

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.06  E-value=0.0039  Score=37.77  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=45.4

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+......   .+..|.|.++
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~---~~~~L~i~~l   85 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAK---NTLYLQMNSL   85 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC-----CEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCc---eEEEEEEecc
Confidence            457789999999999886543  67787541 111      111           135555543211   1235999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|.+.|.|....
T Consensus        86 ~~eDTAvYYCAr~~   99 (126)
T d1rjca1          86 KPEDTAMYYCAADT   99 (126)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             CcccCceeEEEeec
Confidence            99999999996543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.05  E-value=0.0058  Score=36.59  Aligned_cols=71  Identities=15%  Similarity=0.281  Sum_probs=46.7

Q ss_pred             eEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEcC
Q psy16261          8 LIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus         8 ~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      ...+.+|+++.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+.......   +..|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~n---t~~L~m~~   85 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTN---TAYMELSS   85 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcce---EEeccccc
Confidence            3457899999999999886544  67786531 111      111           1455555433211   23699999


Q ss_pred             CCCCCCeEEEEEEE
Q psy16261         68 LSKSDFGTYKCNAK   81 (158)
Q Consensus        68 v~~~d~G~Y~C~a~   81 (158)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.05  E-value=0.0036  Score=37.85  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=46.6

Q ss_pred             EEEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      -.+.+|+.+.|.|.+.|...  -.+.|++.. ++.      +.           ...|+.+......   .+..|.|.++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~---~t~~Lqm~sL   86 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLE---DFVYLQMHKM   86 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTT---TEEEEEECSC
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCcc---ceEeeeeecc
Confidence            34788999999999988543  367787541 111      11           0145666543321   1236999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|...|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999997543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00063  Score=39.90  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=41.8

Q ss_pred             cCCCEEEEeEEeec-CC---CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESY-PK---PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.|.|.+.+. |.   -.++|.++ +..+............++.|...+.|.|..-.=...-.|+|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~-g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFID-DVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEES-SCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEEC-CccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46678999999984 43   37789999 65544332112223333556666666654321112335999998753

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.03  E-value=0.0018  Score=39.09  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             ceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------eec-----------CCeEEEEEeecccceEEEEEEEc
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IHE-----------GSRYHMWTEKFSSYKFYMRLYIG   66 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~~-----------~~~~~~~~~~~~~~~~~~~l~i~   66 (158)
                      ....+.+|+++.|.|.+.|....  .+.|.+.. ++.      +..           ..|+.+.......   +..|.|.
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~---t~~L~~~   84 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSS---TAYMQLS   84 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTT---EEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcc---eEEeccc
Confidence            33457789999999999986543  67787531 111      111           1466565433222   2369999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy16261         67 SLSKSDFGTYKCNAK   81 (158)
Q Consensus        67 ~v~~~d~G~Y~C~a~   81 (158)
                      +++.+|...|.|...
T Consensus        85 sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          85 SLKSEDSAVYFCTRW   99 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCCCcceEEEeccc
Confidence            999999999999643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.01  E-value=0.0056  Score=37.32  Aligned_cols=71  Identities=14%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             EEEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|....  .+.|.+.. ++.      +.           ...|+.+.......   +..|.|.++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~---t~~L~~~~L   85 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTR---TVYLHLRGL   85 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTT---EEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcc---eeEEeeccC
Confidence            457899999999999886543  56676531 111      11           12466665543221   236999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy16261         69 SKSDFGTYKCNAKN   82 (158)
Q Consensus        69 ~~~d~G~Y~C~a~n   82 (158)
                      +.+|.+.|.|....
T Consensus        86 ~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          86 RSDDTAVYYCASNS   99 (133)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCEEEEeeecc
Confidence            99999999996543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.99  E-value=0.0033  Score=37.87  Aligned_cols=70  Identities=20%  Similarity=0.399  Sum_probs=46.4

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Cee------ee-----------c--CCeEEEEEeecccceEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSL------IH-----------E--GSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~------~~-----------~--~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. ++.      +.           .  ..|+.+.......   +..|.|.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~n---t~~L~~~s   87 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQS---ILYLQMNT   87 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTT---EEEEEECS
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccc---eeccceee
Confidence            47789999999999886543  67787531 211      10           0  1355555433211   23599999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy16261         68 LSKSDFGTYKCNAKN   82 (158)
Q Consensus        68 v~~~d~G~Y~C~a~n   82 (158)
                      ++.+|.+.|.|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.98  E-value=0.0038  Score=37.83  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=45.7

Q ss_pred             EEecCCCEEEEeEEeecCC--CeeEEEcCC-Cee------ee-----------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPK--PITFWTHEN-GSL------IH-----------EGSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~--p~i~W~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|...  -.+.|++.. ++.      +.           ...|+.+.......   +.-|.|.+++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~---t~yL~~~~L~   87 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKN---TLFLQMDSLR   87 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTT---EEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCcc---EEEeeeeeee
Confidence            4678999999999988543  356776531 111      11           11455555443221   2359999999


Q ss_pred             CCCCeEEEEEEEc
Q psy16261         70 KSDFGTYKCNAKN   82 (158)
Q Consensus        70 ~~d~G~Y~C~a~n   82 (158)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.94  E-value=0.0043  Score=37.78  Aligned_cols=69  Identities=17%  Similarity=0.367  Sum_probs=45.7

Q ss_pred             EEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e-------------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261         10 GARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H-------------EGSRYHMWTEKFSSYKFYMRLYIGS   67 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~-------------~~~~~~~~~~~~~~~~~~~~l~i~~   67 (158)
                      .+.+|+++.|.|.+.|....  .+.|++.. ++.+      .             ...|+.+.......   +..|.|.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~n---t~~Lq~~~   87 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKN---TLYLQMNS   87 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGT---EEEEEECS
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccc---eeecceec
Confidence            46789999999999875533  67776531 1111      0             12456665543222   23699999


Q ss_pred             CCCCCCeEEEEEEE
Q psy16261         68 LSKSDFGTYKCNAK   81 (158)
Q Consensus        68 v~~~d~G~Y~C~a~   81 (158)
                      ++.+|.+.|.|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.85  E-value=0.0025  Score=38.66  Aligned_cols=69  Identities=20%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             EEecCCCEEEEeEEeecCC---CeeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261         10 GARLAAPLTLDCHVESYPK---PITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSLS   69 (158)
Q Consensus        10 ~~~~g~~v~l~C~~~g~p~---p~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~   69 (158)
                      .+.+|+++.|.|.+.|...   -.+.|++.. |+.+      ..          .+|+.+......   .+..|.|.+++
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~---nt~yL~l~~l~   87 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSK---NQFFLKLNSVT   87 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTT---TEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccccc---ceeecceeccc
Confidence            4678999999999998654   367897530 2211      11          124444432211   12369999999


Q ss_pred             CCCCeEEEEEEE
Q psy16261         70 KSDFGTYKCNAK   81 (158)
Q Consensus        70 ~~d~G~Y~C~a~   81 (158)
                      .+|.+.|.|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999643

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.84  E-value=0.00067  Score=40.66  Aligned_cols=69  Identities=25%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             EecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------ec----------CCeEEEEEeecccceEEEEEEEcCCCCC
Q psy16261         11 ARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------HE----------GSRYHMWTEKFSSYKFYMRLYIGSLSKS   71 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~~   71 (158)
                      +.+|+++.|.|.+.|....  .+.|++.. ++.+      ..          ..|+.+......   .+..|.|.+++.+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~---~tv~L~~~~L~~e   88 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSK---NQVFLKMNSLQTD   88 (116)
T ss_dssp             CCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGG---TEEECCEESCCCC
T ss_pred             ECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEcccccc---chhhcceeccCCC
Confidence            5689999999999986543  67787531 1111      11          134444443211   1235899999999


Q ss_pred             CCeEEEEEEEc
Q psy16261         72 DFGTYKCNAKN   82 (158)
Q Consensus        72 d~G~Y~C~a~n   82 (158)
                      |.+.|.|....
T Consensus        89 DTAvYyCAr~~   99 (116)
T d1fn4b1          89 DTGTYYCTRDL   99 (116)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CCEEEEEEeec
Confidence            99999996543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.84  E-value=0.0021  Score=38.66  Aligned_cols=72  Identities=14%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             ceEEEecCCCEEEEeEEeecCCC--eeEEEcCC-Ceee------e-------------cCCeEEEEEeecccceEEEEEE
Q psy16261          7 QLIGARLAAPLTLDCHVESYPKP--ITFWTHEN-GSLI------H-------------EGSRYHMWTEKFSSYKFYMRLY   64 (158)
Q Consensus         7 ~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~-~~~~------~-------------~~~~~~~~~~~~~~~~~~~~l~   64 (158)
                      ....+.+|+.+.|.|.+.|....  .+.|.+.. ++.+      .             ...|+.+......   .+.-|.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~---nt~yL~   84 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSR---NSIYLQ   84 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTT---SEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcccccc---ceeece
Confidence            33457899999999999986543  56787631 2111      1             0124444432211   123599


Q ss_pred             EcCCCCCCCeEEEEEEE
Q psy16261         65 IGSLSKSDFGTYKCNAK   81 (158)
Q Consensus        65 i~~v~~~d~G~Y~C~a~   81 (158)
                      |.+++.+|.+.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999654

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0022  Score=36.72  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=43.6

Q ss_pred             CCeeEEEcCC--C---------eeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce--EEEEEEE
Q psy16261         28 KPITFWTHEN--G---------SLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS--EGVIKVY   94 (158)
Q Consensus        28 ~p~i~W~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~   94 (158)
                      ...|.|.+.+  +         ..+.....+.+...+        +|.|.++.+.|+|.|...+.+.-|..  +..+.|.
T Consensus        27 iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nG--------tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~Lk   98 (101)
T d1hnfa1          27 IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG--------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK   98 (101)
T ss_dssp             EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS--------CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cceeEEEecCCCcceeeecccCCCCCCCceEEEccCC--------cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEE
Confidence            3478888741  1         223334456666666        89999999999999999999999987  4455555


Q ss_pred             Ee
Q psy16261         95 NI   96 (158)
Q Consensus        95 v~   96 (158)
                      +.
T Consensus        99 I~  100 (101)
T d1hnfa1          99 IQ  100 (101)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0033  Score=35.05  Aligned_cols=48  Identities=25%  Similarity=0.445  Sum_probs=28.8

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeee-ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      ++.+.|.|-..-  ...|+|.+++...+ ..+..                +++.--...|+|+|+|.
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~~Gnt----------------ltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLGSGKT----------------LTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCEESSE----------------EEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCccccccCCCE----------------EEEEEEeccCCcceeEe
Confidence            457899994321  33799999833322 23332                33332234689999996

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.42  E-value=0.0015  Score=39.07  Aligned_cols=69  Identities=22%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             EEEecCCCEEEEeEEeecC--CCeeEEEcCC-Ce------eee-c----------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261          9 IGARLAAPLTLDCHVESYP--KPITFWTHEN-GS------LIH-E----------GSRYHMWTEKFSSYKFYMRLYIGSL   68 (158)
Q Consensus         9 ~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~-~~------~~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~v   68 (158)
                      ..+.+|+++.|.|.+.|..  .-.+.|.+.. ++      .+. .          ..|+.+......   .+..|.|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~---~t~~L~~~sL   86 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSK---NTLYLQMNSL   86 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTT---TEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEecccc---ceEEeeeccc
Confidence            3478999999999998853  3366676531 11      111 1          135555543211   1236999999


Q ss_pred             CCCCCeEEEEEE
Q psy16261         69 SKSDFGTYKCNA   80 (158)
Q Consensus        69 ~~~d~G~Y~C~a   80 (158)
                      +.+|.+.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (117)
T d1b2wh1          87 RPEDTAVYYCAR   98 (117)
T ss_dssp             CGGGCEEEECCE
T ss_pred             cCCcceEEEEcc
Confidence            999999999954

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0033  Score=35.82  Aligned_cols=54  Identities=20%  Similarity=0.410  Sum_probs=37.9

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEEEEEc
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKCNAKN   82 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~a~n   82 (158)
                      ...|.+|.|.|...+.  ..|.|.++ ...+... .+               .|.+.+-+ .+++|-|.|...+
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn-~~~i~g~~~~---------------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKN-GQELPQKHDK---------------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEET-TEEECSCCCS---------------EEEEESCCTTTSCEEEEEECSS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeec-cccCCCCCCc---------------EEEEccccccccCcceEEecCC
Confidence            4569999999997654  46999999 7665432 22               25556643 4799999996544

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.36  E-value=0.0052  Score=34.63  Aligned_cols=62  Identities=8%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      .+.+.|.|.+.|.-+.  .+.|.++ +........  .....++.|...+.+..   ...  ..|+|.+...
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~-g~~~~~~~~--~~~~~~gtys~~s~~~~---~~~--~~yTC~V~H~   76 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSS-KKITEFDPA--IVISPSGKYNAVKLGKY---EDS--NSVTCSVQHD   76 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECS-SEEEECCCE--EEECTTSSEEEEEEEEE---TTT--TTCEEEEEET
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEEC-CEEccCcEE--eeeccCCcEEEEEEEec---CCC--CEEEEEEEEC
Confidence            3557899999996544  6779998 776554332  22333356655444443   333  3599999875

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0025  Score=37.21  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=43.3

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS   87 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~   87 (158)
                      +..+.|.|.+.+.-+.  .+.|.++ +.... ...+......++.|...+.|.+..-.-. ...|+|.+.......
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~-~~~~~-~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSG-ALTSG-VHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNT   92 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGG-TBCTT-EEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTE
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcC-CCCCC-EEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCE
Confidence            5679999999996433  6889776 43210 0111122333355777777887654332 356999999865443

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.30  E-value=0.0026  Score=38.60  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=42.6

Q ss_pred             CCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEE---EE---EeecccceEEEEEEEcCCCCCCCe-EEEEEEEcC
Q psy16261         14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYH---MW---TEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKNT   83 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~   83 (158)
                      +..+.|.|.+.|.-+.  .++|+++ +..+..+....   ..   ...+..|...+.|.+..-.=.+.| .|+|.+...
T Consensus        20 ~~~~tL~C~v~gf~P~~i~v~W~~~-g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          20 TQKATLVCLATGFYPDHVELSWWVN-GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEET-TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEeccCCCeEEEEEEC-CEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            5678999999996433  6889999 77664331110   00   112244666677877654423444 699999865

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0082  Score=33.69  Aligned_cols=60  Identities=20%  Similarity=0.403  Sum_probs=40.4

Q ss_pred             EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEEEc
Q psy16261         11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNAKN   82 (158)
Q Consensus        11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n   82 (158)
                      ...|.+|.|.|..  .....+.|.++ ...+...   ........         .|.+.+-+. +++|-|.|.+..
T Consensus         7 sISGTtV~LTCP~--~~~~~i~W~~n-~~~~~~~~~~~~~~~~~~---------~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQ--YPGSEILWQHN-DKNIGGDEDDKNIGSDED---------HLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSS--CTTSCEEEEET-TEEESSSCSCTTEEEETT---------EEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCC--CCCCceeeeec-cccccCCCcccccccccc---------eEEecccCccccCceEEEEcCC
Confidence            4569999999974  34567999999 6555432   11222222         377777766 689999998854

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.55  E-value=0.0017  Score=38.54  Aligned_cols=69  Identities=12%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261         13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL   84 (158)
Q Consensus        13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~   84 (158)
                      .+..+.|.|.+.|.-+.  .+.|.++ +....  .........++.|...+.|.+..-.-...-.|+|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~-~~~~~--~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSS-EPSDY--KNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSC-CTTTE--EEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeC-CCCCc--EEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            35678999999995433  7889887 43110  1112222333556655656554332112345999998863

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0026  Score=36.73  Aligned_cols=43  Identities=12%  Similarity=0.013  Sum_probs=36.2

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVY  157 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (158)
                      .+.+......+.|.|       .|.+.|..|....+..|.|-++|++|.+
T Consensus        57 ~L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~~~P~pP~g   99 (101)
T d2cqva1          57 KLTILAARQEHCGCY-------TLLVENKLGSRQAQVNLTVVDKPDPPAG   99 (101)
T ss_dssp             EEEETTCCTTTCEEE-------EEEEECSSCEEECCEEEEEECSCSCCCC
T ss_pred             EEEEeeCCcccCEEE-------EEEEEECCCEEEEEEEEEEEecCCCcCC
Confidence            345566677889999       9999999999999999998888888864

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.008  Score=34.78  Aligned_cols=40  Identities=5%  Similarity=-0.115  Sum_probs=33.4

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDP  155 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (158)
                      +.+.+....+.|.|       .|++.|..|....+..+.|-++|+++
T Consensus        64 L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          64 LLFNKPTHYNNGNY-------TLIAKNPLGTANQTINGHFLKEPFPV  103 (105)
T ss_dssp             EEEESCCGGGCEEE-------EEEEEETTEEEEEEEEECCSCCCCCS
T ss_pred             EEEeecccccceEE-------EEEEEcCCCEEEEEEEEEEEeCCCCC
Confidence            44555667888999       99999999999999999988888764

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0013  Score=38.37  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=38.7

Q ss_pred             ecCCCEEEEeEEeec--CCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCC---CeEEEEEEEcCC
Q psy16261         12 RLAAPLTLDCHVESY--PKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD---FGTYKCNAKNTL   84 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~--p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d---~G~Y~C~a~n~~   84 (158)
                      ..++.+.|.|.+.|.  |.. .++|.++++........   ....++.|...+.|   .+...+   ...|+|.+....
T Consensus        16 ~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~---~~~~~gt~s~~S~L---~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          16 LLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP---ERDLCGCYSVSSVL---PGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC---CCCSTTCCCEEEEC---TTTHHHHHHTCEEEEEECCSS
T ss_pred             ccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce---EECCCCCEEEEEEE---EEcHHHcCCCCeEEEEEEeCC
Confidence            357889999999985  332 78899884332221111   11222345444444   344443   457999998653

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.021  Score=30.74  Aligned_cols=59  Identities=19%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV   93 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   93 (158)
                      -+.|.|.|.      -.+.|+++ +..+....      ..        .+.+.......-|.|.|.+.......+.++++
T Consensus         9 e~~V~L~Cn------~si~W~k~-~~~~~~~~------~k--------~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~lQV   67 (74)
T d1xiwb_           9 EDRVFVNCN------TSITWVEG-TVGTLLSD------IT--------RLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (74)
T ss_dssp             TTEEEEECS------SCEEEEEE-CCCEEEGG------GT--------EEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             CCeEEEEcc------CeeEEecC-CcccccCC------cc--------EeecCCcccCCCcceEeCCcccccccCccEEE
Confidence            347899994      46999998 54322111      01        35666666777899999765433333334444

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.03  Score=32.14  Aligned_cols=38  Identities=8%  Similarity=0.048  Sum_probs=32.1

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG  153 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (158)
                      +.+......+.|.|       .|.+.|..|....+..+.|.++|+
T Consensus        64 L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          64 LQLDNPTHMNNGDY-------TLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEESCCGGGCEEE-------EEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEECCCCHHhCceE-------EEEEeccCCEEEEEEEEEEEeCCC
Confidence            44555667889999       999999999999999999877775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.018  Score=33.52  Aligned_cols=41  Identities=5%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDP  155 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|.|.++++.+
T Consensus        69 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          69 EMQIIKAKDNFAGNY-------RCEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEECSCCTTSCEEE-------EEEEECSSCEEEECCEEEEECCCCSC
T ss_pred             EEEEccCCHHHCeEE-------EEEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            355666778899999       99999999999999999986665543

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.00091  Score=40.07  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             ecCCCEEEEeEEeecCC-C---eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261         12 RLAAPLTLDCHVESYPK-P---ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT   83 (158)
Q Consensus        12 ~~g~~v~l~C~~~g~p~-p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~   83 (158)
                      ..+..+.|.|.+.|..+ .   .+.|.++ +...............++.|...+.|.|..-.-...-.|+|.+...
T Consensus        27 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~-~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~  101 (116)
T d1igyb3          27 LITVTPKVTCVVVDISKDDPEVQFSWFVD-NVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSA  101 (116)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSS-SCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCS
T ss_pred             ccCCCcEEEEEEecEeCCCCEEEEEECcC-CeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            34778999999998533 2   4568887 5433222111111222234544555654432212244599988765

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.1  Score=28.51  Aligned_cols=53  Identities=23%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      -..|.|.|.   .....+.|+++ +..+...    .....        +|.+.+.....-|.|.|...+
T Consensus        17 dg~V~L~Cn---~~~k~i~W~kd-g~~i~~~----~~~~k--------tlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          17 DGSVLLTCD---AEAKNITWFKD-GKMIGFL----TEDKK--------KWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSEEEEEEC---SCSSEEEEEET-TEEEEEE----ESSCC--------CEEEEEGGGCCEEEEEEESSS
T ss_pred             CCeEEEEeC---CCCcEEEEecC-CeEeecc----cCCcc--------eeecCCcccCCCcceEcCCCC
Confidence            346889994   34558999999 6543210    00001        366677777788999997543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.67  E-value=0.044  Score=30.86  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPD  150 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|+|..
T Consensus        58 ~L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          58 GLTINRVKGDDKGEY-------TVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EEEESCCCSGGGSCE-------EEEEEETTEEEEEEECCEEEC
T ss_pred             EEEeCCCceecCEEE-------EEEEEECCCEEEEEEEEEEee
Confidence            356666778889999       999999999999999999743

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.12  Score=29.62  Aligned_cols=37  Identities=8%  Similarity=0.022  Sum_probs=30.8

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS  152 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (158)
                      +.+......+.|.|       .|++.|..|....+..+.+-+||
T Consensus        65 L~i~~~~~~D~G~Y-------~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          65 LRLNQPTHVNNGNY-------TLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             EEEESCCGGGCEEE-------EEEEEETTEEEEEEEEECCCSCT
T ss_pred             EEECcccHHHCcEE-------EEEEEeCCCEEEEEEEEEEEcCC
Confidence            45555667889999       99999999999999999976666

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.36  E-value=0.43  Score=26.24  Aligned_cols=52  Identities=23%  Similarity=0.496  Sum_probs=33.8

Q ss_pred             CCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261         15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN   82 (158)
Q Consensus        15 ~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n   82 (158)
                      ..|.|.|..   ....+.|+++ +..+......    ..        +|.+-+.....-|.|.|....
T Consensus        23 GsV~L~Cn~---~~k~i~W~kd-g~~i~~~~~~----~k--------tlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          23 GSVLLTCGL---TDKTIKWLKD-GSIISPLNAT----KN--------TWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             CEEEEECSS---SCSCEEEEET-TEECCCSSCC----SS--------CCEEEETTSCCEEEEEEEESS
T ss_pred             CeEEEEeCC---CCcEEEEecC-Cceecccccc----cc--------eeecCCcccCCCcceEcCCCc
Confidence            368899943   3458999999 6654322100    00        366677777888999997544

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.25  E-value=0.31  Score=26.47  Aligned_cols=34  Identities=0%  Similarity=-0.012  Sum_probs=27.8

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......+.|.|       .|.+.|..|....+..|.|
T Consensus        55 ~L~i~~v~~~d~G~Y-------~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          55 ILTIRNVQPSDAGTY-------VCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEECSCCGGGCEEE-------EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCcccCEEE-------EEEEEECCCEEEEEEEEEE
Confidence            456666778889999       9999999999888877665

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=88.25  E-value=0.089  Score=29.94  Aligned_cols=34  Identities=6%  Similarity=0.014  Sum_probs=28.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|+|
T Consensus        75 ~L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          75 VLYIRNVTFEDAGEY-------TCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEECSCCGGGCEEE-------EEEEECSSCEEEEEEEEEE
T ss_pred             EEEECCCCHHHCeEE-------EEEEEECCCEEEEEEEEEE
Confidence            355666677899999       9999999999999988875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.1  Score=28.68  Aligned_cols=34  Identities=9%  Similarity=0.142  Sum_probs=27.0

Q ss_pred             hhhhcccccccccCcccceEeeeccCCceEEEEccccCCCC
Q psy16261        111 MQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDP  151 (158)
Q Consensus       111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~  151 (158)
                      +...+..+.|.|       .|.|.|..|....+..+.|-.|
T Consensus        51 ~~~v~~~d~G~Y-------~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          51 SVTVTRDLEGTY-------LCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             CEECCGGGCEEE-------EEEEEETTEEEEEEEEEEEECC
T ss_pred             eeccccCCCCEE-------EEEEEcCCCEEEEEEEEEEECC
Confidence            344556788999       9999999999988888876444

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=0.086  Score=29.34  Aligned_cols=35  Identities=6%  Similarity=-0.014  Sum_probs=29.1

Q ss_pred             chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        107 TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      ..+.+......|.|.|       .|.|.|+.|....+..|.|
T Consensus        55 ~~L~i~~v~~~D~G~Y-------~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          55 SVLTVRNASLSAAGTR-------VCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             EEEEECSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             eeEEcCccChhhCCcE-------EEEEEeCCCcEEEEEEEEE
Confidence            3467777788999999       9999999999888877754

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=1.4  Score=24.89  Aligned_cols=68  Identities=12%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             cCceEEEecCCCEEEEeEEeec-------CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261          5 PSQLIGARLAAPLTLDCHVESY-------PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK   77 (158)
Q Consensus         5 ~~~~~~~~~g~~v~l~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   77 (158)
                      .++.-.+..|+.+...|...-.       -.+.+.|..+ ++.++. +.++.....      .+++++.++....+- -+
T Consensus         9 ~p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~-~~~~P~-~qy~~ln~T------~~Svtl~~l~~~~a~-L~   79 (100)
T d1i1ra1           9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPK-EQYTIINRT------ASSVTFTDIASLNIQ-LT   79 (100)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEET-TEECCG-GGCEEEETT------EEEEEECSCCCSEEE-EE
T ss_pred             ecCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEEC-CEECCc-hheEccCCc------EEEEEEccccCCcce-eE
Confidence            3444457899999999999632       3468999999 887765 344443322      246899988766433 34


Q ss_pred             EEEE
Q psy16261         78 CNAK   81 (158)
Q Consensus        78 C~a~   81 (158)
                      |...
T Consensus        80 C~~l   83 (100)
T d1i1ra1          80 CNIL   83 (100)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.15  Score=28.66  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             hhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        110 EMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+......+.|.|       .|.+.|..|....++.++|
T Consensus        69 ~I~~v~~~D~G~Y-------~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          69 VFDPLSASDTGEY-------SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EESSCCGGGCCCE-------EEEEECSSSCCEECCCBCC
T ss_pred             EECCCCcccCcEE-------EEEEEECCCceEEEEEEEE
Confidence            4455667888999       9999999999988887775

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.13  Score=28.64  Aligned_cols=34  Identities=9%  Similarity=0.091  Sum_probs=26.5

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEE-ccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTS-GPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~-~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|...++ +.|.|
T Consensus        61 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          61 SFNVVNTTKRDAGKY-------RCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEECSCCGGGCSEE-------EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCCHHHCeEE-------EEEEEeCCCeEEEEEEEEEE
Confidence            355666677889999       99999999986555 67765

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.15  Score=28.05  Aligned_cols=34  Identities=6%  Similarity=-0.018  Sum_probs=27.9

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......+.|.|       .|++.|+.|....+..+.|
T Consensus        55 ~L~I~~v~~~d~G~Y-------~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          55 TLTMNPVSFGNEHSY-------LCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             EEEESSCCGGGCSEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEecccccccceE-------EEEEEeCCCEEEEEEEEEE
Confidence            356666678889999       9999999999888877764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=85.20  E-value=0.14  Score=28.61  Aligned_cols=34  Identities=6%  Similarity=-0.023  Sum_probs=27.6

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|+|
T Consensus        63 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          63 SLIMESVVPSDKGNY-------TCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             EEEECSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEEECCCCcccCEEE-------EEEEEECCCEEEEEEEEEE
Confidence            355666677888999       9999999999888887764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=85.14  E-value=0.15  Score=28.81  Aligned_cols=33  Identities=6%  Similarity=0.032  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        67 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V   99 (102)
T d1fhga_          67 LTISEVCGDDDAKY-------TCKAVNSLGEATCTAELLV   99 (102)
T ss_dssp             EEESSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             eEecCCCHHhCEEE-------EEEEEECCcEEEEEEEEEE
Confidence            44455667889999       9999999999999988876

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.98  E-value=0.15  Score=28.15  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=27.7

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      .+.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        56 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          56 LLHIQNVDFEDEGTY-------ECEAENIKGRDTYQGRIII   89 (91)
T ss_dssp             EEEECSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCCccCCEEE-------EEEEEECCCEEEEEEEEEE
Confidence            355666778889999       9999999999888877765

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.18  Score=29.29  Aligned_cols=35  Identities=6%  Similarity=-0.031  Sum_probs=28.2

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLP  149 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (158)
                      .+.+......|.|.|       .|.+.|..|.......|.|-
T Consensus        95 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVY-------TVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEE-------EEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCChhcCEEE-------EEEEEECCCEEEEEEEEEEE
Confidence            355566677888999       99999999999888877753

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.13  Score=29.40  Aligned_cols=36  Identities=0%  Similarity=0.028  Sum_probs=30.2

Q ss_pred             hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCC
Q psy16261        108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPD  150 (158)
Q Consensus       108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (158)
                      .+.+......|.|.|       .|.+.|..|....+..|.|.+
T Consensus        73 ~L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          73 ELHITDAQPAFTGGY-------RCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEESCCTTCCEEE-------EEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEeccCHHHCcEE-------EEEEEECCCeEEEEEEEEEEe
Confidence            355566678899999       999999999999999988754

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.75  E-value=0.19  Score=27.69  Aligned_cols=33  Identities=9%  Similarity=0.089  Sum_probs=26.9

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......+.|.|       .|.+.|..|....++.|.|
T Consensus        55 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          55 LRFSKLVLEDSGMY-------QCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             EEESSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeecccCCEEE-------EEEEEeCCCEEEEEEEEEE
Confidence            44555667788999       9999999999988888775

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=83.65  E-value=0.21  Score=26.14  Aligned_cols=44  Identities=16%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             CCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261         14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN   79 (158)
Q Consensus        14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   79 (158)
                      .+.|.|.|.      -.+.|+++ ...+... .+               ++.+.+.....-|.|.|.
T Consensus         8 edkV~L~Cn------~sI~w~k~-~~~~~~~~~k---------------tlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           8 EDKVILKCN------SSITLLQG-TAGQEVSDNK---------------TLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             TTEEEEECS------SSCEEEEE-CCCCBSSSSS---------------BBCCBCSTTCCEEEEECC
T ss_pred             CceEEEEcc------CeEEEccC-ccccccCCCc---------------EEeCCCcccCCCcceECC
Confidence            457899994      35899988 5433222 21               356667777788999994

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=83.19  E-value=0.17  Score=27.78  Aligned_cols=33  Identities=9%  Similarity=0.130  Sum_probs=26.4

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......+.|.|       .|.+.|..|.......|.|
T Consensus        56 L~i~~v~~~d~G~Y-------~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          56 LVIKGVKNGDKGYY-------GCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEESSCCSTTCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCChhhCEEE-------EEEEEECCCEEEEEEEEEE
Confidence            44555667788999       9999999999988877765

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=83.01  E-value=0.2  Score=27.94  Aligned_cols=33  Identities=3%  Similarity=-0.056  Sum_probs=27.6

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....++.|.|
T Consensus        63 L~I~~~~~~D~G~Y-------~c~a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          63 LVIRDVTGEDSASI-------MVKAINIAGETSSHAFLLV   95 (98)
T ss_dssp             EEECSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEeccCccccCEEE-------EEEEEECCcEEEEEEEEEE
Confidence            44556667889999       9999999999999988876

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.86  E-value=0.24  Score=27.28  Aligned_cols=33  Identities=6%  Similarity=-0.067  Sum_probs=26.8

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..+.|
T Consensus        60 L~I~~~~~~D~G~Y-------~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          60 IFFPSAKRADSGNY-------KLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EECTTBCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             eccccccccccEEE-------EEEEEECCCEEEEEEEEEE
Confidence            45566677889999       9999999999888877654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.72  E-value=0.21  Score=27.94  Aligned_cols=33  Identities=6%  Similarity=0.162  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|....+..|+|
T Consensus        65 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          65 LTIRNVDKNDEAEY-------VCIAENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEECSCCGGGCEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCcccCEEE-------EEEEEECCCEEEEEEEEEE
Confidence            45556677888999       9999999999998888875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=81.26  E-value=0.25  Score=27.14  Aligned_cols=34  Identities=6%  Similarity=0.042  Sum_probs=27.3

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLP  149 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (158)
                      +.+......+.|.|       .|.+.|..|....++.|.|.
T Consensus        57 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          57 FEISSVQASDEGNY-------SVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             EECSSCCSCCCEEE-------EEECBCSSCBCCEEEEEECC
T ss_pred             EeecCCCHHHCEEE-------EEEEEECCCEEEEEEEEEEE
Confidence            44555667788999       99999999998888887763

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.71  E-value=0.24  Score=28.11  Aligned_cols=33  Identities=9%  Similarity=0.160  Sum_probs=25.3

Q ss_pred             hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261        109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL  148 (158)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~  148 (158)
                      +.+......|.|.|       .|.+.|..|...++..++|
T Consensus        69 l~I~~v~~~D~G~Y-------~C~a~N~~G~~~~s~~v~l  101 (110)
T d1f97a2          69 LIFDPVTAFDSGEY-------YCQAQNGYGTAMRSEAAHM  101 (110)
T ss_dssp             EEESSCCGGGCEEE-------EEEEECSSSCCEECCCEEE
T ss_pred             eEECCCCccCCEEE-------EEEEEECCCcEEEEEEEEE
Confidence            34556667888999       9999999998877766553