Psyllid ID: psy16273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MSQSQSSYSLVGSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Secondary Structure (PSIPRED)
cccccccEEEEEcEEEEEEEEccccccccccccccEEEcccccEEEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccEEEEEEEEEEEcccccEEEEEEEEEEccccccccccEEEcccccEEEEEEEcccccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccccEEEEcccccccccccccccEEEEccccEEEEEcccEEEEEEcccccccccccEEEEEEEEEccccccHHHEEEccccccEEEEEcccccccccccEEEccc
Coil and Loop (DISEMBL)
msqsqssyslvgsVSALecitsdcghvaentsCEQLVLNHVSELISYTSKKIrtahtnsnctQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRaqldigthstftysTETGLslvdancstslwakskshypfrlwsaaeysfkshtpvtvhakheeksdsksVYREYNrefllpkgtnpesiksslskdgvltveaplpalgapeklipiah
Flexible Loop (DISEMBL)
MSQSQSSYSLVGSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIrtahtnsnctqKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTpvtvhakheeksdsksvYREYNREfllpkgtnpesiKSSLSKDGVLTVeaplpalgapeklipiah
Low Complexity Region (SEG)
MsqsqssyslvgsvsALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Disordered region (IsUnstruct)
*********LVGSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPV****************************************************************
Disordered Region (DISOPRED)
************SVSALECITSDCGHVAENTSCEQLVLNHVSELISYT**************************LSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGT*************************KSKSHYPFRLWSAAEYSFKSHTPVTVHAKH*******SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA*L*********IPI**
Disordered Region (DISEMBL)
***********GSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSH*****************VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Disordered Region (DISPRO)
********SLVGSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSQSSYSLVGSVSALECITSDCGHVAENTSCEQLVLNHVSELISYTSKKIRTAHTNSNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P82147	187	Protein lethal(2)essentia	no	N/A	0.286	0.347	0.455	2e-09
Q05557	174	Alpha-crystallin B chain	N/A	N/A	0.277	0.362	0.484	3e-09
P23927	175	Alpha-crystallin B chain	yes	N/A	0.277	0.36	0.453	4e-09
Q5R9K0	175	Alpha-crystallin B chain	yes	N/A	0.277	0.36	0.453	5e-09
P02511	175	Alpha-crystallin B chain	yes	N/A	0.277	0.36	0.453	5e-09
P05811	175	Alpha-crystallin B chain	N/A	N/A	0.277	0.36	0.468	5e-09
Q60HG8	175	Alpha-crystallin B chain	N/A	N/A	0.277	0.36	0.453	6e-09
Q9EPF3	175	Alpha-crystallin B chain	N/A	N/A	0.277	0.36	0.453	8e-09
P23928	175	Alpha-crystallin B chain	yes	N/A	0.277	0.36	0.453	8e-09
P02510	175	Alpha-crystallin B chain	yes	N/A	0.277	0.36	0.453	1e-08

>sp|P82147|L2EFL_DROME Protein lethal(2)essential for life OS=Drosophila melanogaster GN=l(2)efl PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP-- 219
           V V  KHEEK D    V R+++R + LP   NP+++ SSLS DG+LT++AP+ AL  P  
Sbjct: 102 VIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPPPQT 161

Query: 220 EKLIPIAH 227
           E+L+ I  
Sbjct: 162 ERLVQITQ 169

Vital role in embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|Q05557|CRYAB_ANAPL Alpha-crystallin B chain OS=Anas platyrhynchos GN=CRYAB PE=2 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           V +H KHEE+ D    + RE+NR++ +P   +P +I SSLS DGVLTV AP      PE+
Sbjct: 97  VEIHGKHEERQDEHGFIAREFNRKYRIPADVDPLTITSSLSLDGVLTVSAPRKQSDVPER 156

Query: 222 LIPI 225
            IPI
Sbjct: 157 SIPI 160

May contribute to the transparency and refractive index of the lens.

Anas platyrhynchos (taxid: 8839)

>sp|P23927|CRYAB_MOUSE Alpha-crystallin B chain OS=Mus musculus GN=Cryab PE=1 SV=2

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Mus musculus (taxid: 10090)

>sp|Q5R9K0|CRYAB_PONAB Alpha-crystallin B chain OS=Pongo abelii GN=CRYAB PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Pongo abelii (taxid: 9601)

>sp|P02511|CRYAB_HUMAN Alpha-crystallin B chain OS=Homo sapiens GN=CRYAB PE=1 SV=2

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Homo sapiens (taxid: 9606)

>sp|P05811|CRYAB_MESAU Alpha-crystallin B chain OS=Mesocricetus auratus GN=CRYAB PE=2 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           V VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+
Sbjct: 98  VEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Mesocricetus auratus (taxid: 10036)

>sp|Q60HG8|CRYAB_MACFA Alpha-crystallin B chain OS=Macaca fascicularis GN=CRYAB PE=2 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRVPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Macaca fascicularis (taxid: 9541)

>sp|Q9EPF3|CRYAB_SPAJD Alpha-crystallin B chain OS=Spalax judaei GN=CRYAB PE=2 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Spalax judaei (taxid: 134510)

>sp|P23928|CRYAB_RAT Alpha-crystallin B chain OS=Rattus norvegicus GN=Cryab PE=1 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Rattus norvegicus (taxid: 10116)

>sp|P02510|CRYAB_BOVIN Alpha-crystallin B chain OS=Bos taurus GN=CRYAB PE=1 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPER 157

Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

May contribute to the transparency and refractive index of the lens.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
193618013	203	PREDICTED: alpha-crystallin B chain-like	0.277	0.310	0.936	1e-27
328699752	194	PREDICTED: alpha-crystallin B chain-like	0.277	0.324	0.936	1e-27
350417746	193	PREDICTED: heat shock protein beta-1-lik	0.277	0.326	0.920	1e-26
340729374	193	PREDICTED: heat shock protein beta-1-lik	0.277	0.326	0.920	1e-26
340729372	258	PREDICTED: heat shock protein beta-1-lik	0.277	0.244	0.920	2e-26
383855516	228	PREDICTED: heat shock protein beta-1-lik	0.277	0.276	0.920	2e-26
340729370	228	PREDICTED: heat shock protein beta-1-lik	0.277	0.276	0.920	2e-26
156545575	190	PREDICTED: heat shock protein beta-6-lik	0.286	0.342	0.892	2e-26
307183305	259	Heat shock protein beta-1 [Camponotus fl	0.277	0.243	0.920	2e-26
350417744	258	PREDICTED: heat shock protein beta-1-lik	0.277	0.244	0.920	2e-26

>gi|193618013|ref|XP_001949446.1| PREDICTED: alpha-crystallin B chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 62/63 (98%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEKSDSKSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG P+KLIP
Sbjct: 140 VHAKHEEKSDSKSVYREYNREFLLPKGTNPEAIKSSLSKDGVLTVEAPLPALGGPDKLIP 199

Query: 225 IAH 227
           I+H
Sbjct: 200 ISH 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699752|ref|XP_001949486.2| PREDICTED: alpha-crystallin B chain-like isoform 3 [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 62/63 (98%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEKSDSKSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG P+KLIP
Sbjct: 131 VHAKHEEKSDSKSVYREYNREFLLPKGTNPEAIKSSLSKDGVLTVEAPLPALGGPDKLIP 190

Query: 225 IAH 227
           I+H
Sbjct: 191 ISH 193

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417746|ref|XP_003491574.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus impatiens]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 130 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 189

Query: 225 IAH 227
           IAH
Sbjct: 190 IAH 192

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729374|ref|XP_003402979.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus terrestris]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 130 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 189

Query: 225 IAH 227
           IAH
Sbjct: 190 IAH 192

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729372|ref|XP_003402978.1| PREDICTED: heat shock protein beta-1-like isoform 3 [Bombus terrestris]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 195 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 254

Query: 225 IAH 227
           IAH
Sbjct: 255 IAH 257

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855516|ref|XP_003703256.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Megachile rotundata]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 165 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 224

Query: 225 IAH 227
           IAH
Sbjct: 225 IAH 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729370|ref|XP_003402977.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus terrestris] gi|350417742|ref|XP_003491572.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus impatiens]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 165 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 224

Query: 225 IAH 227
           IAH
Sbjct: 225 IAH 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545575|ref|XP_001607669.1| PREDICTED: heat shock protein beta-6-like isoform 1 [Nasonia vitripennis] gi|226442061|gb|ACO57620.1| small heat shock protein [Pteromalus puparum] gi|343488866|gb|AEM45800.1| small heat shock protein [Pteromalus puparum]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 163 VTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL 222
           + VHAKHEEK+D+KSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG  EKL
Sbjct: 125 LLVHAKHEEKTDTKSVYREYNREFLLPKGTNPETIKSSLSKDGVLTVEAPLPALGQGEKL 184

Query: 223 IPIAH 227
           IPIAH
Sbjct: 185 IPIAH 189

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183305|gb|EFN70174.1| Heat shock protein beta-1 [Camponotus floridanus]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 62/63 (98%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G+ EKLIP
Sbjct: 196 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGSGEKLIP 255

Query: 225 IAH 227
           IAH
Sbjct: 256 IAH 258

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417744|ref|XP_003491573.1| PREDICTED: heat shock protein beta-1-like isoform 3 [Bombus impatiens]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
           VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLIP
Sbjct: 195 VHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLIP 254

Query: 225 IAH 227
           IAH
Sbjct: 255 IAH 257

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
FB|FBgn0031037	192	CG14207 [Drosophila melanogast	0.277	0.328	0.888	4.6e-25
WB|WBGene00002023	219	hsp-25 [Caenorhabditis elegans	0.229	0.237	0.75	4.1e-17
UNIPROTKB|Q05557	174	CRYAB "Alpha-crystallin B chai	0.277	0.362	0.484	5.8e-11
FB|FBgn0011296	187	l(2)efl "lethal (2) essential	0.277	0.336	0.469	9.4e-11
UNIPROTKB|E9PNH7	106	CRYAB "Alpha-crystallin B chai	0.277	0.594	0.453	9.4e-11
UNIPROTKB|E9PR44	174	CRYAB "Alpha-crystallin B chai	0.277	0.362	0.453	9.4e-11
UNIPROTKB|P02511	175	CRYAB "Alpha-crystallin B chai	0.277	0.36	0.453	9.4e-11
UNIPROTKB|Q5R9K0	175	CRYAB "Alpha-crystallin B chai	0.277	0.36	0.453	9.4e-11
MGI|MGI:88516	175	Cryab "crystallin, alpha B" [M	0.277	0.36	0.453	9.4e-11
ZFIN|ZDB-GENE-040718-419	180	cryabb "crystallin, alpha B, b	0.277	0.35	0.484	9.4e-11

FB|FBgn0031037 CG14207 [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 56/63 (88%), Positives = 59/63 (93%)

Query:   165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIP 224
             VHAKHEEKSD+KSVYREYNREFLLPKG NPESI+SSLSKDGVLTV+APLPAL A E LIP
Sbjct:   129 VHAKHEEKSDTKSVYREYNREFLLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIP 188

Query:   225 IAH 227
             IAH
Sbjct:   189 IAH 191

GO:0030018 "Z disc" evidence=IDA

GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0006497 "protein lipidation" evidence=IMP

WB|WBGene00002023 hsp-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query:   165 VHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216
             VHAKHEEK+  ++V+REYN+EFLLP+GTNPE I S+LS DGVLTVEAPLP L
Sbjct:   164 VHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQL 215

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0031430 "M band" evidence=IDA

UNIPROTKB|Q05557 CRYAB "Alpha-crystallin B chain" [Anas platyrhynchos (taxid:8839)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             V +H KHEE+ D    + RE+NR++ +P   +P +I SSLS DGVLTV AP      PE+
Sbjct:    97 VEIHGKHEERQDEHGFIAREFNRKYRIPADVDPLTITSSLSLDGVLTVSAPRKQSDVPER 156

Query:   222 LIPI 225
              IPI
Sbjct:   157 SIPI 160

GO:0042803 "protein homodimerization activity" evidence=ISS

FB|FBgn0011296 l(2)efl "lethal (2) essential for life" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP-- 219
             V V  KHEEK D    V R+++R + LP   NP+++ SSLS DG+LT++AP+ AL  P  
Sbjct:   102 VIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPPPQT 161

Query:   220 EKLIPI 225
             E+L+ I
Sbjct:   162 ERLVQI 167

GO:0009408 "response to heat" evidence=NAS

GO:0009790 "embryo development" evidence=NAS

GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0006497 "protein lipidation" evidence=IMP

UNIPROTKB|E9PNH7 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct:    31 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 90

Query:   222 LIPI 225
              IPI
Sbjct:    91 TIPI 94

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|E9PR44 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct:    98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query:   222 LIPI 225
              IPI
Sbjct:   158 TIPI 161

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|P02511 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct:    98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query:   222 LIPI 225
              IPI
Sbjct:   158 TIPI 161

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006936 "muscle contraction" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0032387 "negative regulation of intracellular transport" evidence=IDA

UNIPROTKB|Q5R9K0 CRYAB "Alpha-crystallin B chain" [Pongo abelii (taxid:9601)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct:    98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query:   222 LIPI 225
              IPI
Sbjct:   158 TIPI 161

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

MGI|MGI:88516 Cryab "crystallin, alpha B" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct:    98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query:   222 LIPI 225
              IPI
Sbjct:   158 TIPI 161

GO:0001666 "response to hypoxia" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IGI

GO:0005212 "structural constituent of eye lens" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0007021 "tubulin complex assembly" evidence=IMP

GO:0007517 "muscle organ development" evidence=IGI

GO:0008017 "microtubule binding" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0031109 "microtubule polymerization or depolymerization" evidence=ISO

GO:0031674 "I band" evidence=ISO

GO:0032387 "negative regulation of intracellular transport" evidence=ISO

GO:0032432 "actin filament bundle" evidence=ISO

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043010 "camera-type eye development" evidence=IGI

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IGI

GO:0043292 "contractile fiber" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051403 "stress-activated MAPK cascade" evidence=ISO

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IGI

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=ISO

ZFIN|ZDB-GENE-040718-419 cryabb "crystallin, alpha B, b" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query:   163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
             + +HAKHE++ D    V RE+ R++ +P G +P SI SSLS DGVLTV  PL     PE+
Sbjct:    87 IEIHAKHEDRQDGHGFVSREFLRKYRVPVGVDPASITSSLSSDGVLTVTGPLKLSDGPER 146

Query:   222 LIPI 225
              I I
Sbjct:   147 TIAI 150

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0051082 "unfolded protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	227
cd06526	83	cd06526, metazoan_ACD, Alpha-crystallin domain (AC	5e-20
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	8e-15
cd06475	86	cd06475, ACD_HspB1_like, Alpha crystallin domain (	3e-12
cd06478	83	cd06478, ACD_HspB4-5-6, Alpha-crystallin domain fo	4e-12
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	3e-11
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	2e-10
cd06498	84	cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crysta	4e-10
cd06476	83	cd06476, ACD_HspB2_like, Alpha crystallin domain (	6e-07
cd06481	87	cd06481, ACD_HspB9_like, Alpha crystallin domain (	8e-07
cd06497	86	cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crysta	2e-06
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	4e-06
cd06480	91	cd06480, ACD_HspB8_like, Alpha-crystallin domain (	2e-04

>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 80.6 bits (200), Expect = 5e-20
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 163 VTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
           + V  KHEE+ D    V RE+ R + LP+G +P+S+ SSLS DGVLT+EAP 
Sbjct: 32  LVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 83

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score = 67.2 bits (165), Expect = 8e-15
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 163 VTVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216
           V V  KHE E+ D   +     YR ++R+F+LP+  +P+ +K+SL KDGVLTV  P    
Sbjct: 32  VLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASL-KDGVLTVTVPKLEP 90

Query: 217 GAP-EKLIPI 225
                + I I
Sbjct: 91  PEKKPRRIQI 100

Length = 101

>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
           V +  KHEEK D    V R + R++ LP G +P ++ SSLS DG+LTVEAP+
Sbjct: 35  VEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiation, cell growth, development, and apoptosis. Its activity can be regulated by phosphorylation. Its unphosphorylated state is a high molecular weight aggregated form (100-800kDa) composed of up to 24 subunits, which forms as a result of multiple interactions within the ACD, and is required for chaperone function and resistance to oxidative stress. Upon phosphorylation these large aggregates rapidly disassociate to smaller oligomers and chaperone activity is modified. High constitutive levels of Hsp27 have been detected in various cancer cells, in particular those of carcinoma origin. Over-expression of Hsp27 has a protective effect against various diseases-processes, including Huntington's disease. Mutations in Hsp27 have been associated with a form of distal hereditary motor neuropathy type II and Charcot-Marie-Tooth disease type 2. Length = 86

>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

 Score = 59.8 bits (145), Expect = 4e-12
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           V +H KHEE+ D    + RE++R + LP G +P +I SSLS DGVLT+  P
Sbjct: 32  VEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activities. HspB5 is protective in demyelinating disease such as multiple sclerosis (MS), being a negative regulator of inflammation. In early active MS lesions it is the most abundant gene transcript and an autoantigen, the immune response against it would disrupt its function and worsen inflammation and demyelination. Given as therapy for ongoing demyelinating disease it may counteract this effect. It is an autoantigen in the pathogenesis of various other inflammatory disorders including Lens-associated uveitis (LAU), and Behcet's disease. Mutations in HspB5 have been associated with diseases including dominant cataract and desmin-related myopathy. Mutations in HspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is ubiquitous and is involved in diverse functions including regulation of glucose transport and contraction of smooth muscle, in platelet aggregation, in cardioprotection, and in the prevention of apoptosis. It interacts with the universal scaffolding and adaptor protein 14-3-3, and also with the proapoptotic protein Bax. Length = 83

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 163 VTVHAKHEEKSDSKS-------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           +T+  + EE+ + +         Y  ++R F LP+  +P+ IK+SL ++GVLT+  P
Sbjct: 32  LTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLP 87

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 163 VTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           +T+  K EE+ + +  Y E+ R F LP+  +PE  K+SL ++GVL +  P
Sbjct: 31  LTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLP 79

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

 Score = 54.3 bits (130), Expect = 4e-10
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           + +H KHEE+ D    + RE+ R++ +P   +P +I SSLS DGVLTV  P
Sbjct: 32  IEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activities. HspB5 is protective in demyelinating disease such as multiple sclerosis (MS), being a negative regulator of inflammation. In early active MS lesions it is the most abundant gene transcript and an autoantigen, the immune response against it would disrupt its function and worsen inflammation and demyelination. Given as therapy for ongoing demyelinating disease it may counteract this effect. It is an autoantigen in the pathogenesis of various other inflammatory disorders including Lens-associated uveitis (LAU), and Behcet's disease. Mutations in HspB5 have been associated with diseases including dominant cataract and desmin-related myopathy. Length = 84

>gnl|CDD|107231 cd06476, ACD_HspB2_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 165 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           V A+H ++ D    V RE+ R ++LP   +P  +++SLS DG+L ++AP
Sbjct: 34  VSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients. The ACD of hHspB2 binds the DMPK kinase domain. In vitro, hHspB2 enhances the kinase activity of DMPK and confers thermoresistance. The hHspB2 gene lies less than 1kb from the 5 prime end of the related alphaB (HspB4)-crystallin gene, with the opposite transcription direction. These two genes may share regulatory elements for their expression. Length = 83

>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 163 VTVHAKHEEKSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           + V  K E+K++ +       Y+E+ RE  LP+  +PE++  SLS  G L + AP
Sbjct: 32  LVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAP 86

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone. Length = 87

>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           V +H KH E+ D    + RE++R + LP   +  +I  SLS DG+LT   P
Sbjct: 35  VEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract. Length = 86

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 163 VTVHAKHEEKSDSKS--------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-- 212
           +T+  + EE+ + +          Y E+ R F LP+  +PE IK+   K+G+LTV  P  
Sbjct: 75  LTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKA 133

Query: 213 LPALGAPEKLIPI 225
            P    P++ I I
Sbjct: 134 EPEEKKPKR-IEI 145

Length = 146

>gnl|CDD|107235 cd06480, ACD_HspB8_like, Alpha-crystallin domain (ACD) found in mammalian 21

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
           V V  KHEE+      V + + ++  LP   +P ++ +SLS +G+L +EAP 
Sbjct: 40  VEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG3591|consensus	173		99.93
PRK11597	142	heat shock chaperone IbpB; Provisional	99.92
PRK10743	137	heat shock protein IbpA; Provisional	99.91
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.9
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.9
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.89
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.89
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.89
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.88
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.87
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.84
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.84
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.84
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.83
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.83
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.8
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.77
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.74
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.72
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.71
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.43
KOG0710|consensus	196		99.36
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	98.93
cd06463	84	p23_like Proteins containing this p23_like domain	98.55
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.02
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	97.91
PF00525	59	Crystallin: Alpha crystallin A chain, N terminal;	97.4
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.12
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	96.9
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	96.38
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	96.11
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	95.94
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	95.14
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	94.28
cd06488	87	p23_melusin_like p23_like domain similar to the C-	94.0
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	88.19
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	87.19
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	81.18

>KOG3591|consensus

Probab=99.93  E-value=4.6e-25  Score=187.13  Aligned_cols=90  Identities=38%  Similarity=0.600  Sum_probs=83.8

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCC-eeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~-~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      .++|+|.|||.+|+|+||+|++ |+.|.|+|+|+++++++ ++.|+|.|+|.||++||+++|+++||.||+|+|++|+..
T Consensus        71 ~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~  150 (173)
T KOG3591|consen   71 KDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP  150 (173)
T ss_pred             CCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence            4889999999999999999999 99999999999997765 999999999999999999999999999999999999988


Q ss_pred             CCC-CCeeeccCC
Q psy16273        216 LGA-PEKLIPIAH  227 (227)
Q Consensus       216 ~e~-~~R~I~I~~  227 (227)
                      ... .+|.|+|++
T Consensus       151 ~~~~~er~ipI~~  163 (173)
T KOG3591|consen  151 PKQDNERSIPIEQ  163 (173)
T ss_pred             CcCccceEEeEee
Confidence            642 599999974

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.92  E-value=1.6e-24  Score=178.71  Aligned_cols=123  Identities=11%  Similarity=0.090  Sum_probs=99.8

Q ss_pred             cccccCCCCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEE
Q psy16273         89 LITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHA  167 (227)
Q Consensus        89 ~dp~Fgs~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~G  167 (227)
                      |+|+|++..++|++++.+.....      ...+||+++.+..       .+.|.|.+|||||+++||+|.+ +|.|+|+|
T Consensus         6 ~~~~~~~~~~~d~l~~~~~~~~~------~~~~P~vdI~e~~-------~~~y~v~adlPGv~kedi~V~v~~~~LtI~g   72 (142)
T PRK11597          6 LSPLLRQWIGFDKLANALQNAGE------SQSFPPYNIEKSD-------DNHYRITLALAGFRQEDLDIQLEGTRLTVKG   72 (142)
T ss_pred             cchhhcccccHHHHHHHhcccCc------cCCCCcEEEEEcC-------CCEEEEEEEeCCCCHHHeEEEEECCEEEEEE
Confidence            68999999999999987764221      2457888876432       1679999999999999999999 99999999


Q ss_pred             EEeeecCC-Cee-----eeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccCC
Q psy16273        168 KHEEKSDS-KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIAH  227 (227)
Q Consensus       168 k~e~~~d~-~~~-----~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~~  227 (227)
                      ++....++ +|.     +++|.|+|.||++||.+  +|+| +||||+|++||..++ .++|+|+|++
T Consensus        73 e~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~~~~~~~~rkI~I~~  136 (142)
T PRK11597         73 TPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRNEPEAIAPQRIAISE  136 (142)
T ss_pred             EEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEeccCccccCCcEEEECC
Confidence            87543332 342     45799999999999998  6999 999999999997543 6899999974

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.91  E-value=2.5e-24  Score=176.30  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=99.7

Q ss_pred             cccccCCCCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEE
Q psy16273         89 LITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHA  167 (227)
Q Consensus        89 ~dp~Fgs~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~G  167 (227)
                      |.|++++++++|++++.+....+.    +...|||+++...+       .+.|.|.++||||+++||+|++ +|.|+|+|
T Consensus         6 ~~~~~~~~~~~d~lf~~~~~~~~~----~~~~~p~~di~ee~-------~~~~~v~aelPGv~kedi~V~v~~~~LtI~g   74 (137)
T PRK10743          6 LSPLYRSAIGFDRLFNLLENNQSQ----SNGGYPPYNVELVD-------ENHYRIAIAVAGFAESELEITAQDNLLVVKG   74 (137)
T ss_pred             cChhhhcccCHHHHhhhhhhhhhc----ccCCCCcEEEEEcC-------CCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence            778899999999999877653321    23346888776322       1789999999999999999999 99999999


Q ss_pred             EEeeecCC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccC
Q psy16273        168 KHEEKSDS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIA  226 (227)
Q Consensus       168 k~e~~~d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~  226 (227)
                      ++..+.++ +|     .+++|.|+|.||++||.+  +|+| +||||+|++||..++ .++|+|+|+
T Consensus        75 e~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743         75 AHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL-VNGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             EECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE-eCCEEEEEEeCCCccccCCeEEeeC
Confidence            87654433 34     346799999999999999  4999 999999999997544 689999985

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.1e-23  Score=170.78  Aligned_cols=118  Identities=21%  Similarity=0.287  Sum_probs=97.3

Q ss_pred             CCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeee--
Q psy16273         96 TFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEK--  172 (227)
Q Consensus        96 ~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~--  172 (227)
                      ..++|+++..+.+......    ..+||+++...+        +.|+|.+|||||+++||+|++ +|.|+|+|+++..  
T Consensus        19 ~~~fd~~~~~~~~~~~~~~----~~~P~vdi~e~~--------~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~   86 (146)
T COG0071          19 SPGFDRLFREFGNLPESRP----TGTPPVDIEETD--------DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEE   86 (146)
T ss_pred             ccchhhhhhhhhccccccc----CCCCcEEEEEcC--------CEEEEEEEcCCCChHHeEEEEECCEEEEEEEeccccc
Confidence            6788888888775433221    368899887543        579999999999999999999 9999999998752  


Q ss_pred             cCC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccC
Q psy16273        173 SDS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIA  226 (227)
Q Consensus       173 ~d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~  226 (227)
                      .++ ++     .+++|.|+|+||++||++.++|+| +||||+|++||..++ .++++|+|+
T Consensus        87 ~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~~~~~~~~i~I~  146 (146)
T COG0071          87 EEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKAEPEEKKPKRIEIE  146 (146)
T ss_pred             ccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eCcEEEEEEeccccccccCceeecC
Confidence            222 33     467899999999999999999999 999999999999875 478999885

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.90  E-value=3.4e-23  Score=156.22  Aligned_cols=76  Identities=28%  Similarity=0.494  Sum_probs=70.1

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .++|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ ++..++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus         6 ~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           6 DDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             CCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            4889999999999999999999 9999999998765544 48899999999999999999999999669999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.89  E-value=4.2e-23  Score=156.34  Aligned_cols=76  Identities=30%  Similarity=0.496  Sum_probs=70.3

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++++.++ +|..++|.|+|+||++||+++|+|+|++||+|+|++||
T Consensus         9 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK   86 (86)
T cd06497           9 RDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK   86 (86)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence            3889999999999999999999 9999999998765544 48889999999999999999999999889999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.89  E-value=6.1e-23  Score=154.27  Aligned_cols=76  Identities=38%  Similarity=0.596  Sum_probs=70.0

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++++.++ +|..|+|.|+|+||++||+++|+|+|++||+|+|++||
T Consensus         6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478           6 KDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            4889999999999999999999 9999999998765444 48889999999999999999999999779999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.89  E-value=8e-23  Score=154.32  Aligned_cols=77  Identities=35%  Similarity=0.523  Sum_probs=70.4

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP  214 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~  214 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ +|..++|.|+|.||++||+++|+|+|++||+|+|++||+
T Consensus         6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498           6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence            3889999999999999999999 9999999998765544 488899999999999999999999995599999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.88  E-value=1.9e-22  Score=155.09  Aligned_cols=76  Identities=28%  Similarity=0.416  Sum_probs=71.0

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .++|+|.|||.||+||||+|++ +|.|+|+|+|+++.++ ++..|+|+|+|.||++||.+.|+|+|++||+|+|++|.
T Consensus        14 ~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~   91 (91)
T cd06480          14 SEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ   91 (91)
T ss_pred             CCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence            3789999999999999999999 9999999999977654 58899999999999999999999999889999999994

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.87  E-value=1.2e-21  Score=148.24  Aligned_cols=75  Identities=17%  Similarity=0.322  Sum_probs=68.9

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP  212 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP  212 (227)
                      .++|.|++|||||+||||+|++ +|.|+|+|+++.+.++ ++..|+|.|+|+||++||+++|+|+|++||||+|++|
T Consensus         6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~   82 (83)
T cd06477           6 KPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK   82 (83)
T ss_pred             CceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence            4889999999999999999999 9999999998765433 5888999999999999999999999878999999987

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.84  E-value=8.9e-21  Score=142.74  Aligned_cols=74  Identities=23%  Similarity=0.353  Sum_probs=67.4

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .+.|.|.+|||||+||||+|++ +|.|+|+|+++...  +..+++|.|+|.||++||+++|+|+|++||+|+|+++|
T Consensus         7 ~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           7 GDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             CCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            4889999999999999999999 99999999875432  34678999999999999999999998799999999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.84  E-value=9.2e-21  Score=143.83  Aligned_cols=76  Identities=29%  Similarity=0.420  Sum_probs=68.2

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC---Ce--eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEE
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS---KS--VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA  211 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~---~~--~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~l  211 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++...+.   .|  .+++|.|+|.||++||.++|+|+|++||+|+|++
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   85 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA   85 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence            3889999999999999999999 9999999998654322   23  4689999999999999999999999999999999


Q ss_pred             eC
Q psy16273        212 PL  213 (227)
Q Consensus       212 Pk  213 (227)
                      ||
T Consensus        86 P~   87 (87)
T cd06481          86 PR   87 (87)
T ss_pred             CC
Confidence            96

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.84  E-value=8.6e-21  Score=143.70  Aligned_cols=76  Identities=38%  Similarity=0.586  Sum_probs=68.8

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ ++..++|.|+|+||++||+++|+|.|.+||+|+|++|.
T Consensus         9 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP~   86 (86)
T cd06475           9 ADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI   86 (86)
T ss_pred             CCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEecC
Confidence            3889999999999999999999 9999999998765444 47789999999999999999999999449999999993

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.83  E-value=7.2e-20  Score=139.60  Aligned_cols=88  Identities=24%  Similarity=0.404  Sum_probs=70.9

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEee-ecCCCe-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEE-KSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE  210 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~-~~d~~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~  210 (227)
                      .+.|.|.++||||.++||+|++ ++.|+|+|++.. ..+..+     ..+.|.|+|.||++||+++|+|.| +||+|+|+
T Consensus         6 ~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~   84 (102)
T PF00011_consen    6 EDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTIT   84 (102)
T ss_dssp             SSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEE
T ss_pred             CCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEE
Confidence            3889999999999999999999 999999999883 233332     347899999999999999999999 99999999


Q ss_pred             EeCCCCCC--CCeeeccC
Q psy16273        211 APLPALGA--PEKLIPIA  226 (227)
Q Consensus       211 lPk~~~e~--~~R~I~I~  226 (227)
                      +||.....  .+|+|+|+
T Consensus        85 ~pk~~~~~~~~~~~I~I~  102 (102)
T PF00011_consen   85 IPKKEEEEDSQPKRIPIK  102 (102)
T ss_dssp             EEBSSSCTTSSSCEE-ET
T ss_pred             EEccccccCCCCeEEEeC
Confidence            99998652  79999985

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.83  E-value=3.5e-20  Score=138.25  Aligned_cols=75  Identities=40%  Similarity=0.639  Sum_probs=68.4

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      +.|.|.+|||||+|+||+|++ ++.|+|+|+++...+. ++.+++|.|+|+||++||+++++|+|+.||+|+|++||
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            589999999999999999999 9999999998876543 47889999999999999999999999434999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.80  E-value=2.3e-19  Score=136.83  Aligned_cols=75  Identities=23%  Similarity=0.332  Sum_probs=66.9

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecC--C--CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSD--S--KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP  212 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d--~--~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP  212 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++...+  .  .+.+++|.|+|.||++||.++|+|+|..+|+|+|+.|
T Consensus         7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~   86 (87)
T cd06482           7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETP   86 (87)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeC
Confidence            4789999999999999999999 999999999865432  1  2677899999999999999999999977779999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.77  E-value=1.7e-18  Score=131.30  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CC-eEEEEEEEeeec--CC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEE
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HT-PVTVHAKHEEKS--DS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVL  207 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n-~L~V~Gk~e~~~--d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvL  207 (227)
                      .+.|.|.++||||+|+||+|++ ++ .|+|+|++....  +. .+     .+++|.|+|+||++||+++|+|+| +||+|
T Consensus         8 ~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~-~nGvL   86 (92)
T cd06472           8 PEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL-ENGVL   86 (92)
T ss_pred             CCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE-ECCEE
Confidence            3789999999999999999999 64 899999875322  12 23     356899999999999999999999 99999


Q ss_pred             EEEEeC
Q psy16273        208 TVEAPL  213 (227)
Q Consensus       208 tI~lPk  213 (227)
                      +|++||
T Consensus        87 ~I~lPK   92 (92)
T cd06472          87 TVTVPK   92 (92)
T ss_pred             EEEecC
Confidence            999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.74  E-value=1.6e-17  Score=126.11  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=63.4

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC--Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE  210 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~--~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~  210 (227)
                      +.|.|.++||||+++||+|++ ++.|+|+|++.....+  +|     .+++|.|+|.||++||.+  +|+| +||+|+|+
T Consensus        11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~   87 (90)
T cd06470          11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTID   87 (90)
T ss_pred             CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEE
Confidence            679999999999999999999 9999999998765432  23     256799999999999985  8999 99999999


Q ss_pred             EeC
Q psy16273        211 APL  213 (227)
Q Consensus       211 lPk  213 (227)
                      +|+
T Consensus        88 l~~   90 (90)
T cd06470          88 LER   90 (90)
T ss_pred             EEC
Confidence            985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.72  E-value=2.8e-17  Score=120.17  Aligned_cols=74  Identities=24%  Similarity=0.465  Sum_probs=66.9

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-------CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-------KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVE  210 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-------~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~  210 (227)
                      +.|.|.++||||++++|+|++ ++.|.|+|++......       .+..+.|.|+|.||.++|++.++|.| .||+|+|+
T Consensus         7 ~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~G~L~I~   85 (88)
T cd06464           7 DAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTIT   85 (88)
T ss_pred             CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eCCEEEEE
Confidence            789999999999999999999 9999999998765432       13568899999999999999999999 88999999


Q ss_pred             EeC
Q psy16273        211 APL  213 (227)
Q Consensus       211 lPk  213 (227)
                      +||
T Consensus        86 ~pk   88 (88)
T cd06464          86 LPK   88 (88)
T ss_pred             EcC
Confidence            997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.71  E-value=4.1e-17  Score=123.39  Aligned_cols=73  Identities=23%  Similarity=0.414  Sum_probs=63.8

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeec---CC--Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKS---DS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVL  207 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~---d~--~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvL  207 (227)
                      +.|.|.++||||+++||+|++ ++.|+|+|++....   +.  .+     .++.|.|+|.|| +||.+.|+|+| +||+|
T Consensus        10 ~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~-~dGvL   87 (93)
T cd06471          10 DEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY-ENGVL   87 (93)
T ss_pred             CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEE-ECCEE
Confidence            789999999999999999999 99999999986432   11  23     245699999998 79999999999 99999


Q ss_pred             EEEEeC
Q psy16273        208 TVEAPL  213 (227)
Q Consensus       208 tI~lPk  213 (227)
                      +|++||
T Consensus        88 ~I~lPK   93 (93)
T cd06471          88 KITLPK   93 (93)
T ss_pred             EEEEcC
Confidence            999997

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.43  E-value=1.1e-12  Score=91.70  Aligned_cols=74  Identities=26%  Similarity=0.443  Sum_probs=67.3

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      +.|.|++++||+.+++|.|++ ++.|.|+|++..........+.|.+++.||..||++.++|.+ .+|+|+|.+||
T Consensus         6 ~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~K   80 (80)
T cd00298           6 DEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLPK   80 (80)
T ss_pred             CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEcC
Confidence            789999999999999999999 999999998776544335678999999999999999999999 78999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG0710|consensus

Probab=99.36  E-value=1.8e-12  Score=111.76  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=72.9

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CC-eEEEEEEEeeecCC---C--e-----eeeEEEEEEeCCCCCCcCCcEEEecCCCE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HT-PVTVHAKHEEKSDS---K--S-----VYREYNREFLLPKGTNPESIKSSLSKDGV  206 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n-~L~V~Gk~e~~~d~---~--~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGv  206 (227)
                      +.|.+.+++||...+||+|++ ++ .|+|+|++....++   +  +     ..+.|.|+|.||++++.+.|+|.| +|||
T Consensus        94 ~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGV  172 (196)
T KOG0710|consen   94 DAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGV  172 (196)
T ss_pred             CceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCe
Confidence            779999999999999999999 66 79999997654432   1  2     245799999999999999999999 9999


Q ss_pred             EEEEEeCCCCC---CCCeeeccC
Q psy16273        207 LTVEAPLPALG---APEKLIPIA  226 (227)
Q Consensus       207 LtI~lPk~~~e---~~~R~I~I~  226 (227)
                      |+|.+||..+.   ..-++|.|.
T Consensus       173 L~VvvpK~~~~~~~~~v~~i~i~  195 (196)
T KOG0710|consen  173 LTVVVPKLEPLLKKPKVRQIAIS  195 (196)
T ss_pred             EEEEEecccccccCCccceeecc
Confidence            99999999872   356666664

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=98.93  E-value=6.7e-09  Score=75.36  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +.+.|++++||.++++++|++ ++.|.|+|            ..|.+.+.||..||++..+|++ .+|.|.|.+||..+
T Consensus         6 ~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~K~~~   71 (78)
T cd06469           6 EDVKISVPLKGVKTSKVDIFCSDLYLKVNF------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLVKKEP   71 (78)
T ss_pred             CEEEEEEEeCCCccccceEEEecCEEEEcC------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEEeCCC
Confidence            779999999999999999999 99999988            2488999999999999999999 89999999999764

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.55  E-value=6.1e-07  Score=64.24  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +.+.|.+.+||..++++.|.+ ++.|.|++....       ...|.+.+.|+..||++...+++ .+|.|.|.|+|+.+
T Consensus         6 ~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~-------~~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~   76 (84)
T cd06463           6 DEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG-------GKEYLLEGELFGPIDPEESKWTV-EDRKIEITLKKKEP   76 (84)
T ss_pred             cEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC-------CCceEEeeEccCccchhhcEEEE-eCCEEEEEEEECCC
Confidence            679999999999999999999 999999997431       24578889999999999999999 89999999999875

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.02  E-value=3.6e-05  Score=56.17  Aligned_cols=70  Identities=13%  Similarity=0.021  Sum_probs=61.6

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|.+.+||..++++.|+. ++.|.|++...       ..+.|...+.|+..|+++..++.+ .+|.|.|.|+|..+
T Consensus         7 ~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~   77 (84)
T cd06466           7 TSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP   77 (84)
T ss_pred             CEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence            678999999999999999999 99999988643       124578889999999999999999 89999999999875

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=97.91  E-value=4.9e-05  Score=65.27  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             eeEEEEecCCCCCCc-eEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        140 KSKSHYPFRLWSAAE-YSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       140 ~y~I~ldvpGF~ped-I~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      .+.|.+||||.++++ |+|++ .+.+.|..+...         .+.+++.||.. +++.+.++| .||||.|.+-+...
T Consensus       103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~---------~~~krv~L~~~-~~e~~~~t~-nNgILEIri~~~~~  170 (177)
T PF05455_consen  103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE---------KYLKRVALPWP-DPEITSATF-NNGILEIRIRRTEE  170 (177)
T ss_pred             cEEEEEeCCCCCcccceeeEeecCCceEEEecCC---------ceEeeEecCCC-ccceeeEEE-eCceEEEEEeecCC
Confidence            589999999999888 99999 555444443222         25689999977 688889999 99999999988764

>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells

Probab=97.40  E-value=5e-05  Score=54.40  Aligned_cols=35  Identities=9%  Similarity=0.113  Sum_probs=28.0

Q ss_pred             HHHhhhhhhhcccCCCCcccccccCCCCChhhhhhhhh
Q psy16273         70 EEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFR  107 (227)
Q Consensus        70 p~l~r~~~~~~~~~~psrL~dp~Fgs~l~~D~L~~~~~  107 (227)
                      |++.|+||+...   |+|||||+||.++..++|+..+.
T Consensus         8 Pw~rR~~~~~~~---PsRiFDQ~FGEgL~d~DLf~~~~   42 (59)
T PF00525_consen    8 PWFRRPLWPFFF---PSRIFDQNFGEGLFDSDLFPSSS   42 (59)
T ss_dssp             HHHHGGGSSSS----SCHHHCTTSEESSTTTT---BT-
T ss_pred             cccccccccccC---chhhHHHhhccccCHhhhccccc
Confidence            999999999554   99999999999999999998763

Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.12  E-value=0.0028  Score=57.23  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=57.7

Q ss_pred             CcceeEEEEecCCC-CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEe-cCCCEEEEEEe
Q psy16273        137 LWAKSKSHYPFRLW-SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSL-SKDGVLTVEAP  212 (227)
Q Consensus       137 ~~~~y~I~ldvpGF-~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsL-s~nGvLtI~lP  212 (227)
                      ..+.++|++.+||. +..+|++.| ++.|.|.....          .|.-.+.||-.||.+...|.+ .+.++|+|++|
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            35789999999999 999999999 99999988432          466779999999999999999 44599999998

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=96.90  E-value=0.015  Score=41.05  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             ceeEEEEecCCC--CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLW--SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF--~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      +...|.+.+++.  +++++.|++ ++.|.|+......       ..|.-...|...|+++.....+ .++.|.|.|.|
T Consensus        10 ~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I~~~~s~~~~-~~~~i~i~L~K   79 (79)
T PF04969_consen   10 DEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEIDPDESTWKV-KDNKIEITLKK   79 (79)
T ss_dssp             SEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-BECCCEEEEE-ETTEEEEEEEB
T ss_pred             CEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeEcchhcEEEE-ECCEEEEEEEC
Confidence            668899999665  599999999 9999999743221       5677778899999999999999 78899999986

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=96.38  E-value=0.037  Score=42.81  Aligned_cols=68  Identities=13%  Similarity=0.060  Sum_probs=57.2

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      +...|++.+++.  +++.|.. .+.|.|++.... .     .+.|.-.+.|...|+++.-+.++ .++.|.|.|.|..
T Consensus        10 ~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~-~-----~~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L~K~~   78 (108)
T cd06465          10 DVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG-G-----GKKYEFDLEFYKEIDPEESKYKV-TGRQIEFVLRKKE   78 (108)
T ss_pred             CEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC-C-----CeeEEEEeEhhhhccccccEEEe-cCCeEEEEEEECC
Confidence            668899999997  8999999 999999985321 1     14466777999999999999999 7899999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=96.11  E-value=0.052  Score=39.99  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=57.6

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.++|..++++.|+. ++.|.+.++...  +     ..|.-.+.|...|++++.+..+ ..+-+.|.|.|..+
T Consensus         7 ~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~--~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K~~~   77 (84)
T cd06489           7 SQVVITILIKNVKPEDVSVEFEKRELSATVKLPS--G-----NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLKKTEA   77 (84)
T ss_pred             CEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC--C-----CcEEEeeecCceecchhcEEEE-eCcEEEEEEEcCCC
Confidence            568899999999999999999 999999986421  1     2366677999999999878888 57789999999764

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=95.94  E-value=0.047  Score=39.81  Aligned_cols=67  Identities=10%  Similarity=0.029  Sum_probs=53.4

Q ss_pred             ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCC-CEEEEEEeCCC
Q psy16273        139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKD-GVLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~n-GvLtI~lPk~~  215 (227)
                      +...|++.+| ++.++|+.|++ .+.|.|+.+.     +.+   -+.  -.|...||++...-++ .+ ..|.|.|+|+.
T Consensus         8 ~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~-----~~~---~l~--~~L~~~I~~~~s~w~~-~~~~~v~i~L~K~~   76 (85)
T cd06467           8 DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-----GEP---LLD--GELYAKVKVDESTWTL-EDGKLLEITLEKRN   76 (85)
T ss_pred             CEEEEEEECCCCCcceeEEEEEEcCEEEEEECC-----CCc---eEc--CcccCceeEcCCEEEE-eCCCEEEEEEEECC
Confidence            5688999996 89999999999 9999998742     111   122  3588999999877888 67 89999999987


Q ss_pred             C
Q psy16273        216 L  216 (227)
Q Consensus       216 ~  216 (227)
                      +
T Consensus        77 ~   77 (85)
T cd06467          77 E   77 (85)
T ss_pred             C
Confidence            5

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=95.14  E-value=0.27  Score=36.53  Aligned_cols=70  Identities=10%  Similarity=0.063  Sum_probs=55.6

Q ss_pred             ceeEEEEecCCCCC---CceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEE-eCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLWSA---AEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREF-LLPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF~p---edI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f-~LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      +...|.+.+|+-.+   +++.|+. .+.|.|.+....    +   ..|.-.+ +|-..|+++.-+..+ ..+-+.|.|.|
T Consensus        11 ~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~----~---~~~~~~~~~L~~~I~~e~s~~~~-~~~ki~i~L~K   82 (92)
T cd06468          11 KFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN----G---KNYRFTINRLLKKIDPEKSSFKV-KTDRIVITLAK   82 (92)
T ss_pred             CEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC----C---cEEEEEehHhhCccCccccEEEE-eCCEEEEEEEe
Confidence            67899999999877   9999999 999999884311    1   2244445 489999999988888 67889999999


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      +.+
T Consensus        83 ~~~   85 (92)
T cd06468          83 KKE   85 (92)
T ss_pred             CCC
Confidence            875

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=94.28  E-value=0.32  Score=36.03  Aligned_cols=67  Identities=15%  Similarity=0.023  Sum_probs=51.0

Q ss_pred             ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCCC
Q psy16273        139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~~  215 (227)
                      +...|.+.+| |..++|++|++ .+.|.|..+     ++.    .+ -.-+|...|+++.-+=++ .+| .|.|.|.|..
T Consensus         8 ~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~-----~~~----~~-~~g~L~~~I~~d~Stw~i-~~~~~l~i~L~K~~   76 (85)
T cd06493           8 EDLTLTIRLPEDTTKEDIRIKFLPDHISIALK-----DQA----PL-LEGKLYSSIDHESSTWII-KENKSLEVSLIKKD   76 (85)
T ss_pred             CEEEEEEECCCCCChhhEEEEEecCEEEEEeC-----CCC----eE-EeCcccCcccccCcEEEE-eCCCEEEEEEEECC
Confidence            6688999995 99999999999 999999752     111    01 233789999999755556 566 7999999987


Q ss_pred             C
Q psy16273        216 L  216 (227)
Q Consensus       216 ~  216 (227)
                      +
T Consensus        77 ~   77 (85)
T cd06493          77 E   77 (85)
T ss_pred             C
Confidence            4

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=94.00  E-value=0.67  Score=34.60  Aligned_cols=70  Identities=10%  Similarity=0.014  Sum_probs=57.6

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|.+-+.|..++++.|.. .+.|.|+.....       ...|.-.+.|-..|+++..+-.. ..+-+.|.|.|+.+
T Consensus        10 ~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L~K~~~   80 (87)
T cd06488          10 SHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVIDVEKSSVNM-LPTKVEIKLRKAEP   80 (87)
T ss_pred             CEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceEChhHcEEEe-cCcEEEEEEEeCCC
Confidence            567888888999999999999 889988765332       13477778999999999888788 78999999999875

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=88.19  E-value=4.1  Score=31.28  Aligned_cols=66  Identities=9%  Similarity=0.011  Sum_probs=49.4

Q ss_pred             ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCCC
Q psy16273        139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~~  215 (227)
                      +...|++.+| |.+++|+.|++ .+.|.|.-+-+     .+...      .|...|+++.-.=++ ++| +|.|.|.|..
T Consensus        15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-----~~l~G------~L~~~I~~destWtl-ed~k~l~I~L~K~~   82 (93)
T cd06494          15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-----EVLKG------KLFDSVVADECTWTL-EDRKLIRIVLTKSN   82 (93)
T ss_pred             CEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-----EEEcC------cccCccCcccCEEEE-ECCcEEEEEEEeCC
Confidence            5577777775 89999999999 99999875211     12222      678899999877788 555 5899999975


Q ss_pred             C
Q psy16273        216 L  216 (227)
Q Consensus       216 ~  216 (227)
                      .
T Consensus        83 ~   83 (93)
T cd06494          83 R   83 (93)
T ss_pred             C
Confidence            3

Little is known about the function of the proteins in this subgroup.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=87.19  E-value=8.2  Score=30.27  Aligned_cols=67  Identities=9%  Similarity=0.016  Sum_probs=48.7

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      +...|++++++  ++|++|++ .+.|.++|.-.  ++     .++.-.+.|=..|+++.-+-.. ..--+.|.|.|+.
T Consensus        11 ~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~--~g-----~~y~~~l~l~~~I~pe~Sk~~v-~~r~ve~~L~K~~   78 (106)
T cd00237          11 DYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG--DN-----VKIYNEIELYDRVDPNDSKHKR-TDRSILCCLRKGK   78 (106)
T ss_pred             CEEEEEEEeCC--CCCcEEEEecCEEEEEEECC--CC-----cEEEEEEEeecccCcccCeEEe-CCceEEEEEEeCC
Confidence            56889999998  79999999 99999998432  11     1244466888899998655555 3444666788875

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=81.18  E-value=14  Score=27.66  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             ceeEEEEecC---CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeC
Q psy16273        139 AKSKSHYPFR---LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvp---GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk  213 (227)
                      +...|++.+|   |.+++||+|++ .+.|.|.-+.+    .-++..      .|...|+++.-.=++ ++| .|.|.|-|
T Consensus         8 ~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~----~~~i~G------~L~~~V~~des~Wtl-ed~~~l~i~L~K   76 (87)
T cd06492           8 SEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ----PPIIDG------ELYNEVKVEESSWLI-EDGKVVTVNLEK   76 (87)
T ss_pred             CEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC----ceEEeC------cccCcccccccEEEE-eCCCEEEEEEEE
Confidence            4567777774   38999999999 99999854211    112333      567888998767778 776 89999999


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      ...
T Consensus        77 ~~~   79 (87)
T cd06492          77 INK   79 (87)
T ss_pred             CCC
Confidence            754

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
3l1g_A	96	Human Alphab Crystallin Length = 96		2e-10
2klr_A	175	Solid-State Nmr Structure Of The Alpha-Crystallin D		3e-10
2wj7_A	94	Human Alphab Crystallin Length = 94		9e-09
2y1y_A	90	Human Alphab Crystallin Acd(Residues 71-157) Length		5e-08
2y22_A	94	Human Alphab-Crystallin Domain (Residues 67-157) Le		5e-08
2wj5_A	101	Rat Alpha Crystallin Domain Length = 101		8e-08
2y1z_A	94	Human Alphab Crystallin Acd R120g Length = 94		1e-07
3q9p_A	85	Hspb1 Fragment Length = 85		6e-06
3l1e_A	106	Bovine Alphaa Crystallin Zinc Bound Length = 106		2e-05
3l1f_A	103	Bovine Alphaa Crystallin Length = 103		2e-05
3n3e_A	106	Zebrafish Alphaa Crystallin Length = 106		9e-04

>pdb|3L1G|A Chain A, Human Alphab Crystallin Length = 96

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 32  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 91
Query: 222 LIPI 225
            IPI
Sbjct: 92  TIPI 95

>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain In Alphab- Crystallin Oligomers Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157
Query: 222 LIPI 225
            IPI
Sbjct: 158 TIPI 161

>pdb|2WJ7|A Chain A, Human Alphab Crystallin Length = 94

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 35  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 94

>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 31  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 90

>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157) Length = 94

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 35  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 94

>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain Length = 101

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 211
           V VHA+HEE+ D    + RE++R + LP G +P ++ S+LS +GVL+++A
Sbjct: 36  VEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 85

>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g Length = 94

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++ ++ +P   +P +I SS+S DGVLTV  P   +  PE+
Sbjct: 35  IEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 94

>pdb|3Q9P|A Chain A, Hspb1 Fragment Length = 85

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
           V +  KH  + D    + R + R++ LP G +P  + SSLS +G LTVEAP+P
Sbjct: 32  VEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84

>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA---LG 217
           V +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+    G
Sbjct: 37  VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 96
Query: 218 APEKLIPIA 226
             E+ IP++
Sbjct: 97  HSERAIPVS 105

>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin Length = 103

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA---LG 217
           V +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+    G
Sbjct: 34  VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 93
Query: 218 APEKLIPIA 226
             E+ IP++
Sbjct: 94  HSERAIPVS 102

>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin Length = 106

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 150 WSAAEYSFK-SHTPVTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVL 207
           +S  E S K +   V +  KH E+ D    + RE++R + LP   +  +I  +LS DG+L
Sbjct: 21  FSPDELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLSADGLL 80
Query: 208 TVEAPLPA---LGAPEKLIPI 225
           T+  P  +    G  ++ IP+
Sbjct: 81  TLCGPKTSGIDAGRGDRTIPV 101
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	4e-24
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	2e-20
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	6e-20
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	3e-19
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	1e-18
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-15
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-15
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	4e-06
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	6e-06
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	1e-05
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	3e-05

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 93.5 bits (232), Expect = 4e-24
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 98  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157

Query: 222 LIPIAH 227
            IPI  
Sbjct: 158 TIPITR 163

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           + VH KHEE+ D    + RE++R++ +P   +P +I SS+S DGVLTV  P   +  PE+
Sbjct: 31  IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 80.2 bits (198), Expect = 6e-20
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
           V VHA+HEE+ D    + RE++R + LP G +P ++ S+LS +GVL+++A   +  A   
Sbjct: 36  VEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLP 95

Query: 222 LIPIA 226
             P A
Sbjct: 96  SPPAA 100

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 78.8 bits (194), Expect = 3e-19
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP-- 219
           V +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P    G    
Sbjct: 37  VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 96

Query: 220 --EKLIPIA 226
             E+ IP++
Sbjct: 97  HSERAIPVS 105

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 163 VTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
           V +  KH  + D    + R + R++ LP G +P  + SSLS +G LTVEAP+P
Sbjct: 32  VEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 163 VTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215
           + V A+        ++     R   LP   +   I+++++ D VL +EAP+  
Sbjct: 137 LVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNE 189

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 163 VTVHAKHEEKSDSK----SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
           V VH    ++  ++    S +RE+ + F+ P+  +    ++ +  DG++ VEAPL 
Sbjct: 259 VYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEAPLF 313

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 168 KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE- 220
             E++  +   +R      ++ R F L +    E +K+ L ++GVLTV  P   +  PE 
Sbjct: 86  TKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEV 144

Query: 221 KLIPIA 226
           K I I+
Sbjct: 145 KAIQIS 150

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 163 VTVHAKH---EEKSDSKSVYRE------YNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
           + + AK          + +Y E        R   LP     E+  +   ++GVL+V  P 
Sbjct: 91  LEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 149

Query: 214 PALGAPEKLIPI 225
               + +K I I
Sbjct: 150 AE-SSIKKGINI 160

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 163 VTVHA--KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
           +++    K E  ++++   R       ++R F LP   + + I ++  ++GVL +  P
Sbjct: 39  LSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG-RNGVLEIRIP 95

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 163 VTVHA-KHEEKSDSKSVYREYN---REFLLPKGTNPES-IKSSLSKDGVLTVEAP 212
           + + A +   +   K + +      +   LP     ++ I     ++GVLT+  P
Sbjct: 60  LIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIP 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.96
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.92
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.9
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.9
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.88
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.88
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.85
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.82
4fei_A	102	Heat shock protein-related protein; stress respons	99.82
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.8
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.78
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.69
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.21
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.14
3igf_A	374	ALL4481 protein; two-domained protein consisting o	96.89
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	95.02
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	94.24
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	94.12
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	93.14
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	92.59
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	92.2
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	91.85
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	90.55
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	90.34
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	90.12
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	89.83

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.96  E-value=4.2e-29  Score=210.28  Aligned_cols=147  Identities=25%  Similarity=0.362  Sum_probs=72.9

Q ss_pred             HHHhhhhhhhcccCCCCcccccccCCCCChhhhhhhhhhhcccCCCCCccccCCCC----c-cccccC--CCCCCcceeE
Q psy16273         70 EEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETG----L-SLVDAN--CSTSLWAKSK  142 (227)
Q Consensus        70 p~l~r~~~~~~~~~~psrL~dp~Fgs~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~----i-~~~~~e--~~~s~~~~y~  142 (227)
                      |+++|.||+...   |+||||++||.++..++++..+...        .++|+++.    . ......  .-.++.+.|.
T Consensus         8 ~~~~~~~~~~~~---~~rl~d~~fg~~~~~~~l~~~~~~~--------~~~~~~~~~~~r~~~~~~~~~~dv~e~~d~~~   76 (175)
T 2klr_A            8 PWIRRPFFPFHS---PSRLFDQFFGEHLLESDLFPTSTSL--------SPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFS   76 (175)
T ss_dssp             ------------------------------------------------------------------------CCCCSEEE
T ss_pred             CcccCccccccC---CcchhhhhcCCCCChhhhccccccc--------CccccCchhhccccccccCCceEEEEcCCeEE
Confidence            889998777543   8999999999999988886544211        12333321    0 000000  0122358999


Q ss_pred             EEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCCCCC
Q psy16273        143 SHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE  220 (227)
Q Consensus       143 I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e~~~  220 (227)
                      |.+|||||+||||+|++ +|.|+|+|+++++.++ +|..|+|.|+|.||++||.++|+|+|++||||+|++||...+.++
T Consensus        77 v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK~~~~~~~  156 (175)
T 2klr_A           77 VNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE  156 (175)
T ss_dssp             EEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEECC------
T ss_pred             EEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEECCCCCCCC
Confidence            99999999999999999 9999999999876544 488999999999999999999999997799999999998754457


Q ss_pred             eeeccCC
Q psy16273        221 KLIPIAH  227 (227)
Q Consensus       221 R~I~I~~  227 (227)
                      |+|+|++
T Consensus       157 r~I~I~~  163 (175)
T 2klr_A          157 RTIPITR  163 (175)
T ss_dssp             -------
T ss_pred             eEEEEec
Confidence            9999963

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.92  E-value=1.2e-24  Score=168.76  Aligned_cols=89  Identities=29%  Similarity=0.505  Sum_probs=81.7

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++++.++ +|..|+|.|+|.||++||+++|+|+|++||+|+|++||..
T Consensus        11 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK~~   90 (106)
T 3l1e_A           11 RDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIP   90 (106)
T ss_dssp             SSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEEBCC
T ss_pred             CCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEccC
Confidence            3889999999999999999999 9999999998776555 4888999999999999999999999988999999999998


Q ss_pred             CC----CCCeeeccC
Q psy16273        216 LG----APEKLIPIA  226 (227)
Q Consensus       216 ~e----~~~R~I~I~  226 (227)
                      ++    .++|+|+|+
T Consensus        91 ~~~~~~~~~r~I~I~  105 (106)
T 3l1e_A           91 SGVDAGHSERAIPVS  105 (106)
T ss_dssp             CCTTTTSSSCCCCCC
T ss_pred             cccccCCCCeEeeec
Confidence            74    389999997

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.90  E-value=3e-23  Score=159.38  Aligned_cols=88  Identities=32%  Similarity=0.467  Sum_probs=77.0

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      .+.|.|.+|||||+++||+|++ +|.|+|+|+++.+.++ +|..|+|.|+|.||++||+++|+|+|++||+|+|++||..
T Consensus        10 ~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK~~   89 (101)
T 2wj5_A           10 PGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPAS   89 (101)
T ss_dssp             SSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEECBCC
T ss_pred             CCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEECCC
Confidence            3789999999999999999999 9999999999876544 4888999999999999999999999977999999999987


Q ss_pred             CCCCCeeeccC
Q psy16273        216 LGAPEKLIPIA  226 (227)
Q Consensus       216 ~e~~~R~I~I~  226 (227)
                      + .+||.++|.
T Consensus        90 ~-~~~~~~~i~   99 (101)
T 2wj5_A           90 A-QASLPSPPA   99 (101)
T ss_dssp             C-CCSSCC---
T ss_pred             c-CCCCCCccc
Confidence            5 567777763

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.90  E-value=5.4e-24  Score=175.29  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=81.5

Q ss_pred             CcccccccCCCCChhhhhhhhh----hhcc--cCCC---CCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceE
Q psy16273         86 NNLLITHYGSTFYYFFRLQSFR----AQLD--IGTH---STFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYS  156 (227)
Q Consensus        86 srL~dp~Fgs~l~~D~L~~~~~----~~~r--~~~~---~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~  156 (227)
                      +|+|+++|+..++.........    ++..  ....   .....|+|.++.+.        .+.|.|.+|||||++|||+
T Consensus        12 ~r~~~~~f~~~~~~~~~~~~~~~~p~~~~~~p~~a~~~~~~~~~~~pvdi~e~--------~~~~~v~~dlPG~~~edi~   83 (161)
T 4eld_A           12 ERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEG--------DQHIKVIAWLPGVNKEDII   83 (161)
T ss_dssp             ---------------------------------CCCCCEEEEESCCCEEEEEC--------SSEEEEEEECTTCCGGGEE
T ss_pred             HHHHHHHhCCCCccccccCCcccCCcccccCccccccccccCCcccceeEEEe--------CCEEEEEEECCCCChHhEE
Confidence            5788999988876654332211    0000  0000   01134666544331        2789999999999999999


Q ss_pred             EEe-CCeEEEEEEEeeec---CCCe------eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCCCCCeeeccC
Q psy16273        157 FKS-HTPVTVHAKHEEKS---DSKS------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIA  226 (227)
Q Consensus       157 V~v-~n~L~V~Gk~e~~~---d~~~------~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e~~~R~I~I~  226 (227)
                      |++ +|.|+|+|+++...   +++|      .++.|.|+|.||++||.++|+|+| +||||+|++||.+. .++|+|+|+
T Consensus        84 V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lpK~~~-~~~r~I~Ie  161 (161)
T 4eld_A           84 LNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAES-SIKKGINIE  161 (161)
T ss_dssp             EEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE-ETTEEEEEEEBCGG-GSCCCCCCC
T ss_pred             EEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE-ECCEEEEEEEcCCC-CCCcEeecC
Confidence            999 99999999987632   2223      234899999999999999999999 89999999999874 579999995

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.88  E-value=1.5e-22  Score=151.14  Aligned_cols=77  Identities=31%  Similarity=0.562  Sum_probs=67.4

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP  214 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~  214 (227)
                      .+.|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ ++.+++|.|+|.||++||+++|+|+|.+||+|+|++||.
T Consensus         6 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lPK~   84 (85)
T 3q9p_A            6 ADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP   84 (85)
T ss_dssp             CCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEECC
T ss_pred             CCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEEcC
Confidence            4889999999999999999999 9999999998765544 478899999999999999999999994499999999995

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.88  E-value=4.2e-22  Score=149.79  Aligned_cols=83  Identities=31%  Similarity=0.515  Sum_probs=71.1

Q ss_pred             cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      .+.|.|.+|||||+++||+|++ ++.|+|+|+++...++ +|..++|.|+|.||++||+++|+|+|++||+|+|++||..
T Consensus         5 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK~~   84 (90)
T 2y1y_A            5 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQ   84 (90)
T ss_dssp             -CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECBC-
T ss_pred             CCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEcCC
Confidence            4789999999999999999999 9999999998776544 4888999999999999999999999977999999999987


Q ss_pred             CCCCCe
Q psy16273        216 LGAPEK  221 (227)
Q Consensus       216 ~e~~~R  221 (227)
                      + .+||
T Consensus        85 ~-~~p~   89 (90)
T 2y1y_A           85 V-SGPE   89 (90)
T ss_dssp             ------
T ss_pred             C-CCCC
Confidence            5 4454

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.85  E-value=4.1e-21  Score=157.24  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=75.0

Q ss_pred             ceeEEEEecCCCCCCceEEEe-C-CeEEEEEEEeeecCC---Cee-----eeEEEEEEeCCCCCCcCCcEEEecCCCEEE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-H-TPVTVHAKHEEKSDS---KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLT  208 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~-n~L~V~Gk~e~~~d~---~~~-----~R~F~R~f~LP~~VD~~~I~AsLs~nGvLt  208 (227)
                      +.|.|.++||||+++||+|++ + +.|+|+|++..+.++   +|.     ++.|.|+|.||++||.++|+|+| +||+|+
T Consensus        53 d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~-~nGvL~  131 (151)
T 1gme_A           53 EAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLT  131 (151)
T ss_dssp             SEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEE-ETTEEE
T ss_pred             CEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEE-ECCEEE
Confidence            789999999999999999999 5 799999998764322   243     46799999999999999999999 999999


Q ss_pred             EEEeCCCCC-CCCeeeccC
Q psy16273        209 VEAPLPALG-APEKLIPIA  226 (227)
Q Consensus       209 I~lPk~~~e-~~~R~I~I~  226 (227)
                      |++||..++ .+.|+|+|+
T Consensus       132 I~lPK~~~~~~~~~~I~I~  150 (151)
T 1gme_A          132 VTVPKAEVKKPEVKAIQIS  150 (151)
T ss_dssp             EEEECCCCCTTCCCCCCCC
T ss_pred             EEEEccCcCCCCCeEeeeC
Confidence            999998764 356889886

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.82  E-value=8.4e-20  Score=138.52  Aligned_cols=88  Identities=13%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             ccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC---Cee-----eeEEEEEEeCCC
Q psy16273        120 YSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS---KSV-----YREYNREFLLPK  190 (227)
Q Consensus       120 ~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~---~~~-----~R~F~R~f~LP~  190 (227)
                      +.|++++.+.        .+.|.|.++||||+++||+|++ +|.|+|+|++......   +|.     ++.|.|+|.||.
T Consensus         3 ~~P~~di~e~--------~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~   74 (100)
T 3gla_A            3 WVPRVDIKEE--------VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPD   74 (100)
T ss_dssp             SCCCEEEEEC--------SSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCT
T ss_pred             ccCcEEEEEC--------CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCC
Confidence            4566666532        2789999999999999999999 9999999998764322   242     457999999999


Q ss_pred             CCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        191 GTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       191 ~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +||+++|+|+| +||+|+|++||.++
T Consensus        75 ~vd~~~i~A~~-~~GvL~I~~pK~~~   99 (100)
T 3gla_A           75 SADADGITAAG-RNGVLEIRIPKRPA   99 (100)
T ss_dssp             TBCTTSCEEEE-ETTEEEEEEEBC--
T ss_pred             CcChHHeEEEE-eCCEEEEEEecCCC
Confidence            99999999999 89999999999864

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.82  E-value=1e-19  Score=139.35  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=73.7

Q ss_pred             ccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCC---eeeeEEEEEEeCCCCCCcC
Q psy16273        120 YSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSK---SVYREYNREFLLPKGTNPE  195 (227)
Q Consensus       120 ~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~---~~~R~F~R~f~LP~~VD~~  195 (227)
                      +.||+++.+.+        +.|.|.++||||+++||+|++ +|.|+|+|+++.+..-.   ..++.|.|+|.||.+||.+
T Consensus         5 ~~P~~di~e~~--------~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~   76 (102)
T 4fei_A            5 WTPAADWRDAG--------THLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPA   76 (102)
T ss_dssp             CCCCEEEEEET--------TEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTT
T ss_pred             ccCcEEEEEcC--------CEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchh
Confidence            34666664322        779999999999999999999 99999999986432111   2456899999999999999


Q ss_pred             CcEEEecCCCEEEEEEeCCCCC
Q psy16273        196 SIKSSLSKDGVLTVEAPLPALG  217 (227)
Q Consensus       196 ~I~AsLs~nGvLtI~lPk~~~e  217 (227)
                      +|+|+| +||+|+|++||..+.
T Consensus        77 ~i~A~~-~~GvL~I~lpK~~~~   97 (102)
T 4fei_A           77 SGVASL-AGGVLTVRFEKLRPT   97 (102)
T ss_dssp             CCEEEE-ETTEEEEEEEBSSCC
T ss_pred             HcEEEE-ECCEEEEEEEccCcc
Confidence            999999 899999999998763

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.80  E-value=9e-20  Score=143.82  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=77.0

Q ss_pred             cCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-C-CeEEEEEEEeeecCCCeeee----EEEEEEeCCCCCCc
Q psy16273        121 STETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-H-TPVTVHAKHEEKSDSKSVYR----EYNREFLLPKGTNP  194 (227)
Q Consensus       121 ~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~-n~L~V~Gk~e~~~d~~~~~R----~F~R~f~LP~~VD~  194 (227)
                      +|++++...        .+.|.|.++||||+++||+|++ + +.|+|+|++..+.+.+|..+    .|.|+|.||++||.
T Consensus        24 ~P~~di~e~--------~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~   95 (123)
T 3aab_A           24 YPPVDMYEE--------GGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAK   95 (123)
T ss_dssp             CSCEEEEEE--------TTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECT
T ss_pred             CCcEEEEEc--------CCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCc
Confidence            456666532        2789999999999999999999 8 99999999876553344332    89999999999999


Q ss_pred             CCc-EEEecCCCEEEEEEeCCCCCCCCeeeccC
Q psy16273        195 ESI-KSSLSKDGVLTVEAPLPALGAPEKLIPIA  226 (227)
Q Consensus       195 ~~I-~AsLs~nGvLtI~lPk~~~e~~~R~I~I~  226 (227)
                      ++| +|+| +||+|+|++||... .  + |+|+
T Consensus        96 ~~i~~A~~-~~GvL~I~lPK~~~-~--~-I~Ie  123 (123)
T 3aab_A           96 DAEISGKY-ENGVLTIRIPIAGT-S--V-FKFE  123 (123)
T ss_dssp             TCCCEEEE-ETTEEEEEEEGGGE-E--C-SCCC
T ss_pred             chhCeeEE-cCCEEEEEEEcCCC-C--c-cccC
Confidence            999 9999 89999999999774 2  2 8774

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.78  E-value=5.8e-19  Score=160.46  Aligned_cols=84  Identities=21%  Similarity=0.359  Sum_probs=73.9

Q ss_pred             eeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCCC
Q psy16273        140 KSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA  218 (227)
Q Consensus       140 ~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e~  218 (227)
                      .|.|.+|||||+||||+|++ +|.|+|+|+++.+.++++.+++|.|+|.||++||+++|+|+|..||||+|++||..++ 
T Consensus       113 ~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~-  191 (314)
T 2bol_A          113 HFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPN-  191 (314)
T ss_dssp             EEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSCC-
T ss_pred             EEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEeccCcc-
Confidence            79999999999999999999 9999999998865555578899999999999999999999993399999999998764 


Q ss_pred             CCeeecc
Q psy16273        219 PEKLIPI  225 (227)
Q Consensus       219 ~~R~I~I  225 (227)
                       .+.|+|
T Consensus       192 -~~~I~i  197 (314)
T 2bol_A          192 -YKAIKL  197 (314)
T ss_dssp             -TTTEEE
T ss_pred             -cceeec
Confidence             233544

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.69  E-value=4.4e-17  Score=148.14  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=65.0

Q ss_pred             cceeEEEEec-CCCCCCceEEEe-CCeEEEEEEEeeecCC----CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEE
Q psy16273        138 WAKSKSHYPF-RLWSAAEYSFKS-HTPVTVHAKHEEKSDS----KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA  211 (227)
Q Consensus       138 ~~~y~I~ldv-pGF~pedI~V~v-~n~L~V~Gk~e~~~d~----~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~l  211 (227)
                      .+.|.+.++| |||+||||+|++ +|.|+|+|+++.+.++    .+.+++|.|+|.||++||+++|+|+| +||||+|++
T Consensus       232 ~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~-~dGvL~i~~  310 (314)
T 2bol_A          232 SKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI-VDGLMVVEA  310 (314)
T ss_dssp             CEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEE-ETTEEEEEE
T ss_pred             CcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEE-eCCEEEEEE
Confidence            4789999999 999999999999 9999999998775543    14678999999999999999999999 899999999


Q ss_pred             eCC
Q psy16273        212 PLP  214 (227)
Q Consensus       212 Pk~  214 (227)
                      ||.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            985

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.21  E-value=5.4e-06  Score=63.47  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.+||..++++.|++ ++.|.|+++..   +    .+.|...+.|+..||++..++++ .+|.|.|.|+|..+
T Consensus        19 ~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~---~----~~~y~~~~~L~~~I~~e~s~~~~-~~~~l~i~L~K~~~   89 (114)
T 1rl1_A           19 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLP---S----GEDYNLKLELLHPIIPEQSTFKV-LSTKIEIKLKKPEA   89 (114)
T ss_dssp             SEEEEEECCCSCCGGGEEEECSSSCEEEEEECT---T----SSEEEEEECBSSCCCGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             CEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeC---C----CcEEEEEeeCCCcCCccccEEEE-ECCEEEEEEEcCCC
Confidence            678999999999999999999 99999998642   1    14688899999999999999999 88999999999875

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.14  E-value=5.1e-06  Score=60.90  Aligned_cols=70  Identities=7%  Similarity=-0.052  Sum_probs=61.5

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.+||..++++.|++ ++.|.|+++..   +    .+.|...+.|+..||++..++++ .+|.|.|.|+|..+
T Consensus        12 ~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~---~----~~~y~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~   82 (92)
T 2xcm_C           12 EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVP---G----EDAYYLQPRLFGKIIPDKCKYEV-LSTKIEICLAKADI   82 (92)
T ss_dssp             TEEEEEEECCSCCGGGEEEEECSSBEEEEECCT---T----SCCEEECCBBSSCBCGGGCEEEE-CSSCEEEEEEBSSS
T ss_pred             CEEEEEEEECCCChHHeEEEEECCEEEEEEEcC---C----CcEEEEeeEcCCccCchhEEEEE-ECCEEEEEEEcCCC
Confidence            668999999999999999999 99999998542   1    14688889999999999999999 79999999999875

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=96.89  E-value=0.0024  Score=58.72  Aligned_cols=60  Identities=13%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             eeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCC-cEEEecCCCEEEEEEe
Q psy16273        140 KSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPES-IKSSLSKDGVLTVEAP  212 (227)
Q Consensus       140 ~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~-I~AsLs~nGvLtI~lP  212 (227)
                      .|.+++.+|||++++|++.- |..|+|+.            ..|+|.+.||....--. ..|.| +||.|+|..-
T Consensus       306 ~~~~~l~lP~~~~~~~~l~~~gdeL~v~~------------g~~rR~i~LP~~L~~~~v~~A~~-~~~~L~i~~~  367 (374)
T 3igf_A          306 NRQVRLFLPGFDKKQVKLTQYGPEVTVEA------------GDQRRNIFLPPALSGRPITGAKF-QNNYLIISFL  367 (374)
T ss_dssp             TTEEEEECTTCCGGGCEEEEETTEEEEEE------------TTEEEEEECCTTTTTCCEEEEEE-ETTEEEEEEC
T ss_pred             cEEEEEECCCCCHHHeEEEEECCeEEEEE------------CCEeecccCCHHHcCCCccccEE-ECCEEEEEEe
Confidence            59999999999999999999 99999998            56999999998765443 57999 9999999874

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.035  Score=44.69  Aligned_cols=66  Identities=12%  Similarity=0.061  Sum_probs=54.6

Q ss_pred             ceeEEEEecCCCC--CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCC-CcCCcEEEec-CCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLWS--AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGT-NPESIKSSLS-KDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF~--pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~V-D~~~I~AsLs-~nGvLtI~lPk  213 (227)
                      +...|.+-+|..+  ..++++.+ ++.+....            .-|.-+++||..| |.++-+|+|. +.|.|+|++||
T Consensus        13 e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~------------~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK   80 (134)
T 2k8q_A           13 EFIFLKIFISNIRFSAVGLEIIIQENMIIFHL------------SPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   80 (134)
T ss_dssp             SEEEEEEECCSSCCCSSSCCCEECSSSEEECS------------SSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEEEcCccccCccccEEEEeCCEEEEec------------CCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeC
Confidence            5678888999988  89999998 77776655            2345669999999 9898999995 59999999999


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      ..+
T Consensus        81 ~~~   83 (134)
T 2k8q_A           81 LNK   83 (134)
T ss_dssp             SST
T ss_pred             CCC
Confidence            875

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.24  E-value=0.3  Score=37.84  Aligned_cols=70  Identities=10%  Similarity=-0.019  Sum_probs=57.6

Q ss_pred             ceeEEEEecCCC---CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEe-CCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLW---SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFL-LPKGTNPESIKSSLSKDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF---~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~-LP~~VD~~~I~AsLs~nGvLtI~lPk  213 (227)
                      +...|.+.++|.   .++++.|++ .+.|.|..+...       ...|.-.+. |-..||++.-...+ ..+.+.|.|.|
T Consensus        30 ~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~-------~~~y~~~~~~L~~~I~~e~S~~~v-~~~kVei~L~K  101 (127)
T 1x5m_A           30 KFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLN-------GKSYSMIVNNLLKPISVEGSSKKV-KTDTVLILCRK  101 (127)
T ss_dssp             TEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCS-------SSCEEEEEECBSSCCCTTTCEEEE-ETTEEEEEEEC
T ss_pred             CEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCC-------CCcEEEEhHHhcCccCcccCEEEE-eCCEEEEEEEE
Confidence            678999999998   899999999 999999884221       134666774 99999999878888 67999999999


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      ..+
T Consensus       102 ~~~  104 (127)
T 1x5m_A          102 KVE  104 (127)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            764

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=94.12  E-value=0.48  Score=37.18  Aligned_cols=67  Identities=12%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             ceeEEEEecCCCC--CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCC-CcCCcEEEec-CCCEEEEEEeC
Q psy16273        139 AKSKSHYPFRLWS--AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGT-NPESIKSSLS-KDGVLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpGF~--pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~V-D~~~I~AsLs-~nGvLtI~lPk  213 (227)
                      +...|.+-+|..+  ..++++.+ ++.+....            .-|--+..||..| |.+.-+|+|. ++|.++|.+||
T Consensus        27 efv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~------------~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK   94 (115)
T 3eud_A           27 EFIFLKIFISNIRFSAVGLEIIIQENMIIFHL------------SPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   94 (115)
T ss_dssp             SEEEEEEECCSCCCCSSSCEEEEETTEEEEEE------------TTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEEEcCceecccCccEEEEeCCEEEEec------------CCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcC
Confidence            5577888888754  88999999 88877766            2356679999997 7677789984 69999999999


Q ss_pred             CCCC
Q psy16273        214 PALG  217 (227)
Q Consensus       214 ~~~e  217 (227)
                      ..+.
T Consensus        95 ~~~G   98 (115)
T 3eud_A           95 LNKN   98 (115)
T ss_dssp             SSTT
T ss_pred             CcCC
Confidence            8763

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=93.14  E-value=0.81  Score=35.19  Aligned_cols=70  Identities=19%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             ceeEEEEecC-CC-CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCE-EEEEEeCC
Q psy16273        139 AKSKSHYPFR-LW-SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGV-LTVEAPLP  214 (227)
Q Consensus       139 ~~y~I~ldvp-GF-~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGv-LtI~lPk~  214 (227)
                      +...|++.|| |. +++|+.|++ .+.|.|..+..    .+   ..+.-...|...|+++.-.-.+ .+|- |.|.|.|.
T Consensus        29 ~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~----~~---~~~~~~~~L~~~I~~e~S~w~i-~~~k~v~i~L~K~  100 (124)
T 1wgv_A           29 TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEE----NG---ERVLMEGKLTHKINTESSLWSL-EPGKCVLVNLSKV  100 (124)
T ss_dssp             TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECS----SS---EEEEEEEEBSSCBCTTTCEEEE-CTTSEEEEEECBS
T ss_pred             cEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEcc----CC---CceEEcccccCcCCCcCCEEEE-eCCCEEEEEEEEC
Confidence            6688999998 77 899999999 99999987531    01   1122345799999999888888 6775 99999997


Q ss_pred             CC
Q psy16273        215 AL  216 (227)
Q Consensus       215 ~~  216 (227)
                      .+
T Consensus       101 ~~  102 (124)
T 1wgv_A          101 GE  102 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=92.59  E-value=0.4  Score=37.05  Aligned_cols=69  Identities=9%  Similarity=-0.053  Sum_probs=55.5

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.+++  .+++.|++ .+.|.+++.-..+      ...|.-.+.|-..|+++.-+.++ .++-+.|.|.|+.+
T Consensus        13 ~~V~ltI~~~~--~~~~~V~~~~~~l~~~~~~~~~------~~~y~~~l~L~~~I~~e~S~~~v-~~~kiei~L~K~~~   82 (125)
T 1ejf_A           13 DYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSD------NFKHLNEIDLFHCIDPNDSKHKR-TDRSILCCLRKGES   82 (125)
T ss_dssp             SEEEEEECCTT--EEEEEEEEETTEEEEEEEETTT------TEEEEEEEEBSSCEEEEEEEEEE-CSSCEEEEEEESST
T ss_pred             CEEEEEEEecC--CCceEEEEECCEEEEEEEeCCC------CceEEEEEEccceeccccCEEEE-CCCEEEEEEEECCC
Confidence            56889999998  48999999 9999999853111      14577788999999999888888 67889999999764

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=92.20  E-value=0.37  Score=38.17  Aligned_cols=77  Identities=6%  Similarity=-0.046  Sum_probs=58.6

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecC--CC---eeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSD--SK---SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP  212 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d--~~---~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP  212 (227)
                      +...|++.+++..++++.|++ .+.|.|..+-....-  -+   .....|.-.+.|-..|+++.-..++ ..+-+.|.|.
T Consensus        30 ~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v-~~~kIeI~L~  108 (134)
T 1wh0_A           30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF-TASRIDICLR  108 (134)
T ss_dssp             TEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE-CSSEEEEEEE
T ss_pred             CEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEE-eCCEEEEEEE
Confidence            568899999999999999999 999999875322110  00   0012577778899999999877777 6799999999


Q ss_pred             CCCC
Q psy16273        213 LPAL  216 (227)
Q Consensus       213 k~~~  216 (227)
                      |+..
T Consensus       109 K~e~  112 (134)
T 1wh0_A          109 KRQS  112 (134)
T ss_dssp             ESSS
T ss_pred             ECCC
Confidence            9764

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=91.85  E-value=0.49  Score=36.45  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             ceeEEEEecCC---CCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeC
Q psy16273        139 AKSKSHYPFRL---WSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvpG---F~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk  213 (227)
                      +...|++.||.   .+++|+.|++ .+.|.|..+-     ..+     .-.-.|...|+++.-.-++ ++| .|.|.|.|
T Consensus        26 ~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg-----~~~-----~~~g~L~~~I~~deS~w~i-~~~~~i~i~L~K   94 (121)
T 3qor_A           26 SELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG-----QPA-----IIDGELYNEVKVEESSWLI-ADGAVVTVHLEK   94 (121)
T ss_dssp             SEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT-----SCC-----SEEEEBSSCBCGGGCEEEE-ETTTEEEEEEEB
T ss_pred             ceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC-----cce-----EEeccccccccccccEEEE-cCCCEEEEEEEE
Confidence            56889999984   7999999999 9999987631     111     1244788999999888889 777 99999998


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      ...
T Consensus        95 ~~~   97 (121)
T 3qor_A           95 INK   97 (121)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            754

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=90.55  E-value=0.3  Score=38.41  Aligned_cols=74  Identities=11%  Similarity=0.040  Sum_probs=54.3

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCE-EEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGV-LTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGv-LtI~lPk~~~  216 (227)
                      +...|++.+|+.  +++.|.+ .+.|.+++......+ ....+.|.-.+.|...||++.-+..+ .++- +.|.|.|+.+
T Consensus        23 ~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g-~~~~~~y~~~l~L~~~Idpe~S~~~v-~~~~~vei~L~K~~~   98 (134)
T 2cg9_X           23 NYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVG-DENVHHYQLHIDLYKEIIPEKTMHKV-ANGQHYFLKLYKKDL   98 (134)
T ss_dssp             SEEEEECCCSSE--ESCCCCBCSSEEEECCEEC--------CEEBCEEEECSSCCCSSSEEEEE-CCC--CEEEEEECSS
T ss_pred             CEEEEEEEecCC--CceEEEEECCEEEEEEecccccC-CccCceEEEEEEChhhccccccEEEE-CCCEEEEEEEEECCC
Confidence            557888888885  5999999 999999875421000 00124567778999999999989999 6777 9999999873

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=90.34  E-value=0.43  Score=37.03  Aligned_cols=67  Identities=21%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             ceeEEEEecC-C--CCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeC
Q psy16273        139 AKSKSHYPFR-L--WSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPL  213 (227)
Q Consensus       139 ~~y~I~ldvp-G--F~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk  213 (227)
                      +...|++.|| |  .+++++.|++ .+.|.|..+     +..+.     -...|...|+++.-.-++ .+| .|.|.|.|
T Consensus        17 ~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k-----g~~~~-----~~~~L~~~I~~e~s~w~i-~~~k~v~i~L~K   85 (131)
T 1wfi_A           17 AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK-----GQPPV-----VDGELYNEVKVEESSWLI-EDGKVVTVHLEK   85 (131)
T ss_dssp             SEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET-----TSCCS-----BCSCBSSCBCSTTCEEEE-ETTTEEEEEEEB
T ss_pred             CEEEEEEECCCCCcccccceEEEEeCCEEEEEEC-----CceEE-----EecccccccccccCEEEE-cCCCEEEEEEEE
Confidence            5688999999 6  7899999999 999999874     11111     133688899999888888 777 89999999


Q ss_pred             CCC
Q psy16273        214 PAL  216 (227)
Q Consensus       214 ~~~  216 (227)
                      ..+
T Consensus        86 ~~~   88 (131)
T 1wfi_A           86 INK   88 (131)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            764

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=90.12  E-value=1.5  Score=35.36  Aligned_cols=66  Identities=11%  Similarity=-0.050  Sum_probs=53.3

Q ss_pred             ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCCC
Q psy16273        139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~~  215 (227)
                      +...|++.|| |.+++||.|++ .+.|.|..+-      .    .+ -...|...|+++.-.-++ .+| +|.|.|.|..
T Consensus        23 ~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg------~----~~-l~g~L~~~I~~eeS~w~i-~~~k~v~I~L~K~~   90 (157)
T 2rh0_A           23 EEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGG------R----EI-LKGKLFDSTIADEGTWTL-EDRKMVRIVLTKTK   90 (157)
T ss_dssp             SEEEEEEECCTTCCGGGEEEEECSSEEEEEETT------E----EE-EEEEBSSCBCGGGCEEEE-ECCCEEEEEEEBSS
T ss_pred             CEEEEEEECCCCCcccceEEEEecCEEEEEECC------E----EE-EeeccccccCccccEEEE-cCCcEEEEEEEEcC
Confidence            6688999997 89999999999 9999998741      1    11 345789999999888888 666 5999999986


Q ss_pred             C
Q psy16273        216 L  216 (227)
Q Consensus       216 ~  216 (227)
                      +
T Consensus        91 ~   91 (157)
T 2rh0_A           91 R   91 (157)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=89.83  E-value=0.94  Score=35.19  Aligned_cols=65  Identities=11%  Similarity=0.073  Sum_probs=50.4

Q ss_pred             ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273        139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA  215 (227)
Q Consensus       139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~  215 (227)
                      +...|++.|| |.+++++.|++ .+.|.|..+-.          . .-...|...|+++.-.-.+ .+|-|.|.|.|..
T Consensus        14 ~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~----------~-~~~~~L~~~I~~e~S~w~i-~~~kv~i~L~K~~   80 (131)
T 2o30_A           14 NEINIQFPVTGDADSSAIKIRMVGKKICVKNQGE----------I-VIDGELLHEVDVSSLWWVI-NGDVVDVNVTKKR   80 (131)
T ss_dssp             TEEEEEEECC---CCSCEEEEEETTEEEEEETTE----------E-EEEEEBSSCEEEEEEEEEE-ETTEEEEEEEESS
T ss_pred             CEEEEEEECCCCCCccceEEEEECCEEEEEECCE----------e-eEccccccccccccCEEEE-eCCEEEEEEEECC
Confidence            5688999995 88999999999 99999987310          1 2345788999999877788 6788999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	9e-04
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	0.002

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 36.3 bits (83), Expect = 9e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 179 YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE-KLIPIA 226
             ++ R F L +    E +K+ L ++GVLTV  P   +  PE K I I+
Sbjct: 102 SGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEVKAIQIS 149

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 179 YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 225
             E  R   LP     E+  +   ++GVL+V  P        K I I
Sbjct: 70  EEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAESSIK-KGINI 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.86
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.81
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	96.87
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	92.65
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	87.48
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	83.08

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.86  E-value=8.3e-22  Score=158.57  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=72.7

Q ss_pred             ceeEEEEecCCCCCCceEEEe-C-CeEEEEEEEeeecCC---Cee-----eeEEEEEEeCCCCCCcCCcEEEecCCCEEE
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-H-TPVTVHAKHEEKSDS---KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLT  208 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~-n~L~V~Gk~e~~~d~---~~~-----~R~F~R~f~LP~~VD~~~I~AsLs~nGvLt  208 (227)
                      +.|.|.++||||+++||+|++ + +.|+|+|++......   ++.     ++.|.|+|.||++||.++|+|+| +||+|+
T Consensus        52 ~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~nGvL~  130 (150)
T d1gmea_          52 EAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLT  130 (150)
T ss_dssp             SEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEE-ETTEEE
T ss_pred             CEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEE-ECCEEE
Confidence            789999999999999999999 6 578999987544322   232     45799999999999999999999 899999


Q ss_pred             EEEeCCCCC-CCCeeeccC
Q psy16273        209 VEAPLPALG-APEKLIPIA  226 (227)
Q Consensus       209 I~lPk~~~e-~~~R~I~I~  226 (227)
                      |++||..++ .+.++|+|+
T Consensus       131 I~lpK~~~~~~~~~~I~I~  149 (150)
T d1gmea_         131 VTVPKAEVKKPEVKAIQIS  149 (150)
T ss_dssp             EEEECCCCCTTCCCCCCCC
T ss_pred             EEEEcCCcCCCCceEEecc
Confidence            999998754 456777775

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=4e-20  Score=141.89  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             cccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecC--C-Ce------eeeEEEEEEeC
Q psy16273        119 TYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSD--S-KS------VYREYNREFLL  188 (227)
Q Consensus       119 ~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d--~-~~------~~R~F~R~f~L  188 (227)
                      ..|+|.++..  .      .+.|.|.++||||+++||+|++ ++.|+|+|++.....  . .+      ..+.|.|+|.|
T Consensus         8 ~~~~pvdi~e--~------~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~l   79 (115)
T d1shsa_           8 KGFMPISIIE--G------DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKL   79 (115)
T ss_dssp             ESCCCEEEEE--C------SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEEC
T ss_pred             CCcCceEEEE--c------CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEec
Confidence            3577866643  2      2789999999999999999999 999999998754322  1 22      24679999999


Q ss_pred             CCCCCcCCcEEEecCCCEEEEEEeCCCCCCCCeeeccC
Q psy16273        189 PKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIA  226 (227)
Q Consensus       189 P~~VD~~~I~AsLs~nGvLtI~lPk~~~e~~~R~I~I~  226 (227)
                      |.+||.++++|.| +||+|+|++||... .++|+|+|+
T Consensus        80 P~~vd~~~i~A~~-~nGvL~I~lpK~~~-~~~~~I~Ie  115 (115)
T d1shsa_          80 PATVKEENASAKF-ENGVLSVILPKAES-SIKKGINIE  115 (115)
T ss_dssp             SSCBCGGGCEEEE-ETTEEEEEEEBCGG-GCCEECCCC
T ss_pred             CCceeecceEEEE-ECCEEEEEEEeCCC-CCCceeeeC
Confidence            9999999999999 99999999999764 678999985

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0026  Score=44.70  Aligned_cols=70  Identities=10%  Similarity=0.082  Sum_probs=58.8

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.+||..++++.|.. .+.|.|......       .+.|.-.+.|...|+++....++ .++-+.|.|.|+.+
T Consensus        12 ~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~-------~~~y~~~~~L~~~I~p~~s~~~~-~~~kiei~L~K~~~   82 (92)
T d1rl1a_          12 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPS-------GEDYNLKLELLHPIIPEQSTFKV-LSTKIEIKLKKPEA   82 (92)
T ss_dssp             SEEEEEECCCSCCGGGEEEECSSSCEEEEEECTT-------SSEEEEEECBSSCCCGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             CEEEEEEEeCCCChHheEEEEecCEEEEEEEcCC-------CcEEEEEEEcCcccCchhcEEEE-eCCEEEEEEEECCC
Confidence            668999999999999999999 999999874211       13566778899999999999999 78899999999765

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.2  Score=35.81  Aligned_cols=69  Identities=9%  Similarity=-0.042  Sum_probs=54.5

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL  216 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~  216 (227)
                      +...|++.+|+  ..++.|++ .+.|.+++.-....      ..|.-.+.|...|+++.-..++ .++-+.|.|.|+.+
T Consensus        13 ~~V~i~I~v~~--~~~~~v~i~~~~l~~~~~~~~~~------~~y~l~~~L~~~I~~~~s~~~v-~~~kiei~L~K~~~   82 (110)
T d1ejfa_          13 DYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDN------FKHLNEIDLFHCIDPNDSKHKR-TDRSILCCLRKGES   82 (110)
T ss_dssp             SEEEEEECCTT--EEEEEEEEETTEEEEEEEETTTT------EEEEEEEEBSSCEEEEEEEEEE-CSSCEEEEEEESST
T ss_pred             CEEEEEEEeCC--CCCceEEEEeceEEEEEEecCCC------ceEEEEEEcccCcccCccEEEE-eCCEEEEEEEEcCC
Confidence            66889999997  57888999 88888887532211      2456677899999999988888 78889999998765

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.82  Score=34.29  Aligned_cols=77  Identities=6%  Similarity=-0.046  Sum_probs=62.0

Q ss_pred             ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC--C---eeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273        139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS--K---SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP  212 (227)
Q Consensus       139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~--~---~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP  212 (227)
                      +...|.+-+.|..++++.|.. ++.|.|.=.-.....-  +   -..+.|.-.+.|-..||++.-.... ..+-+.|.|.
T Consensus        30 ~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v-~~~kiei~L~  108 (134)
T d1wh0a_          30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF-TASRIDICLR  108 (134)
T ss_dssp             TEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE-CSSEEEEEEE
T ss_pred             CEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEEe-CCCEEEEEEE
Confidence            568999999999999999999 9999998753221100  1   1246799999999999999888888 7899999999


Q ss_pred             CCCC
Q psy16273        213 LPAL  216 (227)
Q Consensus       213 k~~~  216 (227)
                      |+.+
T Consensus       109 K~~~  112 (134)
T d1wh0a_         109 KRQS  112 (134)
T ss_dssp             ESSS
T ss_pred             eCCC
Confidence            9765

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=5.6  Score=28.25  Aligned_cols=70  Identities=19%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             ceeEEEEecCC--CCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCC
Q psy16273        139 AKSKSHYPFRL--WSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLP  214 (227)
Q Consensus       139 ~~y~I~ldvpG--F~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~  214 (227)
                      +...|.+.+|.  .+++||.|++ .+.|.|.-+...    +   ..+.-.-.|...|+++.-.-++ +++ +|.+.+.|.
T Consensus        29 ~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~----~---~~~~l~g~L~~~I~~deS~w~i-~~~~~~i~~lkK~  100 (124)
T d1wgva_          29 TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEEN----G---ERVLMEGKLTHKINTESSLWSL-EPGKCVLVNLSKV  100 (124)
T ss_dssp             TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSS----S---EEEEEEEEBSSCBCTTTCEEEE-CTTSEEEEEECBS
T ss_pred             CEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccC----C---cceEEeCcccCcccccccEEEE-eCCCEEEEEEEec
Confidence            56888999985  3578999999 998888643211    0   1222345799999999888899 556 666677765


Q ss_pred             CC
Q psy16273        215 AL  216 (227)
Q Consensus       215 ~~  216 (227)
                      ..
T Consensus       101 ~~  102 (124)
T d1wgva_         101 GE  102 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            53