Psyllid ID: psy16304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSKKKQPRKRKKKVAPLNTDDETELSLPPLRLLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIATDAARRNPNQRDWEDRIG
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEEEEccccccccccccccccccEEEEEEEccccHHHHHHHHcccccccccccccccccccccccccccEEEcccccccHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEEEEccccccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEcccccccccEEHHHHcccccccHHHHHHHcccccccccEEHcccEEEEEEEEEHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccccccccccEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEEEEccccccHHHHHHHccccccccccccccEEEEEccEcccEEEEEEEccccccHcHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHcHHHHHHHEEHHHHccccccccccHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHccc
Coil and Loop (DISEMBL)
MCYKLYKVHIICRtcfgnlnpvvnleslftekppslkmnlekfggisknssicaTSYKVHIICRIRtfansiepIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIAckdmnmqnvpnfqtssvlsddpaptFEVCIVSLLVHLMRGILMGiqnvpnfqtssvlsddpaptfenFLDLRVLLPthlslfdfrsvpILVLgldnagksSIIKRIlgepiislvptvgfnrarveygnKYEVFLYDLGGSEDFRTIWKQYLGtvsqtplgrpdsrtCQVYLIMCGvhqvsgipdeltsathlplvdfrsvpILVLGLDNAGKSSIIKRIlgepiislvptvgfnrarveygnKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVShslsgrpddrcQVYLMSCNCQVYLISAKnlsngfkkserdetnisnfqiknssenlqdnntsdnhdskkkqprkrkkkvaplntddetelslpplrllgrnvthtdsnqeqrclnlssdplgtgaFNVLHAIATdaarrnpnqrdwedrig
Flexible Loop (DISEMBL)
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKrilgepiislvptvgfNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGtvsqtplgrpDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKrilgepiislvptvgfNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFqiknssenlqdnntsdnhdskkkqprkrkkkvaplntddetelslpplrlLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIAtdaarrnpnqrdwedrig
Low Complexity Region (SEG)
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSkkkqprkrkkkVAPLNTDDETELSLPPLRLLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIATDAARRNPNQRDWEDRIG
Disordered region (IsUnstruct)
*CYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNL******************************************************************************************LGTGAFNVLHAIA******************
Disordered Region (DISOPRED)
**YKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLE******KNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKN*********NMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNV************PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISN*QIKNSSENLQDNNTSDNHDSKK************************PLRLLGRNVTHT********LNLSSDPLGTGAFNVLHAIAT*****************
Disordered Region (DISEMBL)
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQIKNSSENL********************************ELSLPPLRLLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIATDAARR************
Disordered Region (DISPRO)
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSE*DETNISNFQ**N***NL**N*****************************ELSLPPLRLLGRNVTHT**NQEQRCLNLSSDPLGTGAFNVLHAIATDAARRN***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVHIICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSKKKQPRKRKKKVAPLNTDDETELSLPPLRLLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIATDAARRNPNQRDWEDRIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q06849	184	ADP-ribosylation factor-l	yes	N/A	0.147	0.429	0.425	1e-11
Q8JHI3	407	ADP-ribosylation factor-l	yes	N/A	0.122	0.162	0.447	7e-11
Q627K4	184	ADP-ribosylation factor-l	N/A	N/A	0.147	0.429	0.375	2e-10
O08697	184	ADP-ribosylation factor-l	yes	N/A	0.193	0.565	0.333	2e-10
Q19705	184	ADP-ribosylation factor-l	yes	N/A	0.147	0.429	0.375	3e-10
P36404	184	ADP-ribosylation factor-l	yes	N/A	0.193	0.565	0.333	4e-10
Q9D0J4	184	ADP-ribosylation factor-l	yes	N/A	0.193	0.565	0.323	5e-10
Q2TA37	184	ADP-ribosylation factor-l	no	N/A	0.193	0.565	0.323	9e-10
Q20758	180	ADP-ribosylation factor-l	no	N/A	0.130	0.388	0.438	9e-10
Q3SXY8	428	ADP-ribosylation factor-l	no	N/A	0.147	0.184	0.425	1e-09

>sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + IL+LGLDNAGK++I+KR  GEPI ++ PT+GFN   +E+ N Y + ++D+GG +  
Sbjct: 15  REMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEH-NGYTLNMWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R+ W+ Y  +    + V  S
Sbjct: 74  RSYWRNYFESTDGLVWVVDS 93

Does not act as an allosteric activator of the cholera toxin catalytic subunit.
Drosophila melanogaster (taxid: 7227)

>sp|Q8JHI3|AR13B_DANRE ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R V ++++GLDNAGK++ ++ I GE  + + PTVGF++  ++ G K+EV ++DLGG +  
Sbjct: 20  RKVTLVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQG-KFEVTIFDLGGGKRI 78

Query: 255 RTIWKQY 261
           R IWK Y
Sbjct: 79  RGIWKNY 85

Required during embryogenesis for cilia formation in the pronephric duct.

Danio rerio (taxid: 7955)

>sp|Q627K4|ARL2_CAEBR ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + IL+LGLDNAGK++++K+ L EP  ++ PT+GF+   V + + +++ L+D+GG +  
Sbjct: 15  REMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKD-FQLNLWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R+ WK Y  +    + V  S
Sbjct: 74  RSYWKNYFESTDALIWVVDS 93

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis briggsae (taxid: 6238)

>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R V +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 15  RDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Rattus norvegicus (taxid: 10116)

>sp|Q19705|ARL2_CAEEL ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + IL+LGLDNAGK++++K+ L EP  ++ PT+GF+   V + + +++ L+D+GG +  
Sbjct: 15  REMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKD-FQLNLWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R+ WK Y  +    + V  S
Sbjct: 74  RSYWKNYFESTDALIWVVDS 93

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis elegans (taxid: 6239)

>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE I ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 15  RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Homo sapiens (taxid: 9606)

>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 15  RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Mus musculus (taxid: 10090)

>sp|Q2TA37|ARL2_BOVIN ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE I ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 15  RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L +   +  L  A
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGA 118

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Bos taurus (taxid: 9913)

>sp|Q20758|ARL1_CAEEL ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
            LF  R + IL+LGLD AGK++I+ R+    +++ +PT+GFN  +VEY N K++V  +DL
Sbjct: 10  GLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQV--WDL 67

Query: 249 GGSEDFRTIWKQY 261
           GG    R  W+ Y
Sbjct: 68  GGQTSIRPYWRCY 80

GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Caenorhabditis elegans (taxid: 6239)

>sp|Q3SXY8|AR13B_HUMAN ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R V +L++GLDNAGK++  K I GE    + PTVGF++  +  G K+EV ++DLGG    
Sbjct: 20  RKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQG-KFEVTIFDLGGGIRI 78

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R IWK Y       + V  S
Sbjct: 79  RGIWKNYYAESYGVIFVVDS 98

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
124809432	183	ADP-ribosylation factor-like protein [Pl	0.147	0.431	0.475	2e-11
156551615	184	PREDICTED: ADP-ribosylation factor-like	0.158	0.461	0.418	5e-11
145346428	184	predicted protein [Ostreococcus lucimari	0.163	0.478	0.393	2e-10
380024845	184	PREDICTED: ADP-ribosylation factor-like	0.163	0.478	0.393	4e-10
170029695	184	ADP-ribosylation factor [Culex quinquefa	0.158	0.461	0.418	4e-10
332020155	184	ADP-ribosylation factor-like protein 2 [	0.163	0.478	0.393	5e-10
390338106	246	PREDICTED: ADP-ribosylation factor-like	0.353	0.772	0.288	5e-10
48095928	184	PREDICTED: ADP-ribosylation factor-like	0.163	0.478	0.393	5e-10
357601952	184	putative ADP-ribosylation factor-like 2-	0.175	0.510	0.389	5e-10
307206910	184	ADP-ribosylation factor-like protein 2 [	0.163	0.478	0.393	7e-10

>gi|124809432|ref|XP_001348573.1| ADP-ribosylation factor-like protein [Plasmodium falciparum 3D7] gi|23497469|gb|AAN37012.1| ADP-ribosylation factor-like protein [Plasmodium falciparum 3D7]

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R++ IL+LGLDNAGK++IIKR+LGE I S+ PT GFN   +E+GN   + ++D+GG +  
Sbjct: 15  RNLRILILGLDNAGKTTIIKRLLGEDIYSVSPTFGFNIETLEFGNNI-LNIWDIGGQKSI 73

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R  WK Y   V   + V  S
Sbjct: 74  RHFWKNYYEDVDGIIFVVDS 93

Source: Plasmodium falciparum 3D7

Species: Plasmodium falciparum

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|156551615|ref|XP_001600714.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Nasonia vitripennis]

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++I+KR++GEPI ++ PT+GFN   + + N Y++ ++D+GG +  RT W
Sbjct: 19  ILMLGLDNAGKTTIVKRLIGEPIDTISPTLGFNIKTLGH-NGYKLNVWDVGGQKSLRTYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQ 398
           K Y  +    + V  S   R  + C+
Sbjct: 78  KNYFESTDGLIWVVDSADRRRLEDCK 103

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|145346428|ref|XP_001417689.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577917|gb|ABO95982.1| predicted protein [Ostreococcus lucimarinus CCE9901]

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L++GLDNAGK++I+KR+ GEPI  + PT+GFN   + +G  Y + ++D+GG +  
Sbjct: 15  RELRVLMVGLDNAGKTTIVKRVNGEPIDEISPTLGFNIKTMTFG-AYSLNIWDVGGQKTL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRC 397
           R+ WK Y       + V  S  GR    C
Sbjct: 74  RSYWKNYYEATDALIWVVDSADGRRMRDC 102

Source: Ostreococcus lucimarinus CCE9901

Species: Ostreococcus 'lucimarinus'

Genus: Ostreococcus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|380024845|ref|XP_003696200.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Apis florea]

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++++KRI GEPI ++ PT+GFN   +E+   Y++ ++D+GG +  R+ W
Sbjct: 19  ILMLGLDNAGKTTVLKRINGEPIDTISPTLGFNIKTLEH-RGYKLNIWDVGGQKSLRSYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           + Y  +    + V  S   R  + C++ L
Sbjct: 78  RNYFESTDGLVWVIDSADKRRLEDCKIEL 106

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029695|ref|XP_001842727.1| ADP-ribosylation factor [Culex quinquefasciatus] gi|167864046|gb|EDS27429.1| ADP-ribosylation factor [Culex quinquefasciatus]

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++I+KR  GEPI  + PT+GFN   +EY N Y + ++D+GG +  R+ W
Sbjct: 19  ILLLGLDNAGKTTILKRFNGEPIDQISPTLGFNIKTLEY-NNYTLNMWDVGGQKSLRSYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQ 398
           + Y       + V  S      D C+
Sbjct: 78  RNYFECTDGVVWVVDSTDRMRMDSCR 103

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020155|gb|EGI60599.1| ADP-ribosylation factor-like protein 2 [Acromyrmex echinatior]

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++++KR+ GEPI ++ PT+GFN   +E+   Y++ ++D+GG +  R+ W
Sbjct: 19  ILMLGLDNAGKTTVLKRLNGEPIDTISPTLGFNIKTLEH-RGYKLNVWDVGGQKSLRSYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           + Y  +    + V  S   R  D C+  L
Sbjct: 78  RNYFESTDGLVWVIDSADKRRLDDCKTEL 106

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390338106|ref|XP_783520.2| PREDICTED: ADP-ribosylation factor-like [Strongylocentrotus purpuratus]

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 39/229 (17%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
            LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+
Sbjct: 11  GLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 68

Query: 249 GGSEDFRTIWKQYL----GTV-------------SQTPLGR---PDSRTCQVYLIMCGVH 288
           GG +  R +W+ Y     G +             ++  L R    D     V L++    
Sbjct: 69  GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERLAEAKEELNRMLSEDELRDAVLLVLANKQ 128

Query: 289 QVSGI--PDELTSATHLPLVDFRSVPI----------LVLGLD---NAGKSSIIKRILGE 333
            +      +E   A  L  ++ R   I          L  GLD   NA K S        
Sbjct: 129 DLPNAMKANEAKEALQLSGLNQRKWYIHSTCATTGDGLYEGLDWLSNALKKSGFGAHDSP 188

Query: 334 PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 382
            II+ + T+GFN   VEY N     ++D+GG +  R +W+ Y     +T
Sbjct: 189 QIITTLYTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQET 236

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|48095928|ref|XP_394559.1| PREDICTED: ADP-ribosylation factor-like protein 2-like isoform 1 [Apis mellifera]

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++++KRI GEPI ++ PT+GFN   +E+   Y++ ++D+GG +  R+ W
Sbjct: 19  ILMLGLDNAGKTTVLKRINGEPIDTISPTLGFNIKTLEH-RGYKLNIWDVGGQKSLRSYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           + Y  +    + V  S   R  + C++ L
Sbjct: 78  RNYFESTDGLVWVIDSADRRRLEDCKIEL 106

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357601952|gb|EHJ63207.1| putative ADP-ribosylation factor-like 2-like protein [Danaus plexippus]

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + + IL+LGLDNAGK++I+KR  GEPI ++ PT+GFN   +E+   Y++ ++D+GG +  
Sbjct: 15  KEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEH-RGYKLNIWDVGGQKSL 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMS 403
           R+ WK Y  +      V  S   R    C   L S
Sbjct: 74  RSYWKNYFESTDGVAWVVDSADARRLSDCAKELHS 108

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206910|gb|EFN84756.1| ADP-ribosylation factor-like protein 2 [Harpegnathos saltator]

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++++KR+ GEPI ++ PT+GFN   +E+   Y++ ++D+GG +  R+ W
Sbjct: 19  ILMLGLDNAGKTTVLKRLNGEPIDTISPTLGFNIKTLEH-RGYKLNIWDVGGQKSLRSYW 77

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           + Y  +    + V  S   R  D C+  L
Sbjct: 78  RNYFESTDGLVWVIDSADRRRLDDCKTEL 106

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
GENEDB_PFALCIPARUM|PF14_0399	183	PF14_0399 "ADP-ribosylation-li	0.147	0.431	0.475	9.2e-14
UNIPROTKB|Q8IL50	183	PF14_0399 "ADP-ribosylation fa	0.147	0.431	0.475	9.2e-14
FB|FBgn0004908	184	Arl2 "ADP ribosylation factor-	0.214	0.625	0.378	8.6e-13
TAIR|locus:2827399	182	ARF3 "ADP-ribosylation factor	0.221	0.653	0.352	1.7e-11
GENEDB_PFALCIPARUM|PF10_0337	178	PF10_0337 "ADP-ribosylation fa	0.128	0.387	0.472	5.9e-11
UNIPROTKB|Q8IJ63	178	PF10_0337 "ADP-ribosylation fa	0.128	0.387	0.472	5.9e-11
DICTYBASE|DDB_G0281307	184	arl2 "ARF-like protein" [Dicty	0.171	0.5	0.365	5.9e-11
RGD|69326	184	Arl2 "ADP-ribosylation factor-	0.175	0.510	0.347	5.9e-11
UNIPROTKB|O08697	184	Arl2 "ADP-ribosylation factor-	0.175	0.510	0.347	5.9e-11
WB|WBGene00000187	180	arl-1 [Caenorhabditis elegans	0.126	0.377	0.465	7.6e-11

GENEDB_PFALCIPARUM|PF14_0399 PF14_0399 "ADP-ribosylation-like factor, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 187 (70.9 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query:   309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
             R++ IL+LGLDNAGK++IIKR+LGE I S+ PT GFN   +E+GN   + ++D+GG +  
Sbjct:    15 RNLRILILGLDNAGKTTIIKRLLGEDIYSVSPTFGFNIETLEFGNNI-LNIWDIGGQKSI 73

Query:   369 RTIWKQYLGTVSQTLLVSHS 388
             R  WK Y   V   + V  S
Sbjct:    74 RHFWKNYYEDVDGIIFVVDS 93

GO:0003924 "GTPase activity" evidence=ISS

GO:0006471 "protein ADP-ribosylation" evidence=ISS

UNIPROTKB|Q8IL50 PF14_0399 "ADP-ribosylation factor-like protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 187 (70.9 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query:   309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
             R++ IL+LGLDNAGK++IIKR+LGE I S+ PT GFN   +E+GN   + ++D+GG +  
Sbjct:    15 RNLRILILGLDNAGKTTIIKRLLGEDIYSVSPTFGFNIETLEFGNNI-LNIWDIGGQKSI 73

Query:   369 RTIWKQYLGTVSQTLLVSHS 388
             R  WK Y   V   + V  S
Sbjct:    74 RHFWKNYYEDVDGIIFVVDS 93

GO:0003924 "GTPase activity" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0006471 "protein ADP-ribosylation" evidence=ISS

FB|FBgn0004908 Arl2 "ADP ribosylation factor-like 2" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 45/119 (37%), Positives = 70/119 (58%)

Query:   195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
             R + IL+LGLDNAGK++I+KR  GEPI ++ PT+GFN   +E+ N Y + ++D+GG +  
Sbjct:    15 REMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEH-NGYTLNMWDVGGQKSL 73

Query:   255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVH-QVSGIPDELTSATHLPLVDFRSVP 312
             R+ W+ Y  +     +   DS   ++ L  CG   QV    + L  AT L L + + +P
Sbjct:    74 RSYWRNYFESTDGL-VWVVDSAD-RMRLESCGQELQVLLQEERLAGATLLVLCNKQDLP 130

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

TAIR|locus:2827399 ARF3 "ADP-ribosylation factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 44/125 (35%), Positives = 67/125 (53%)

Query:   190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYD 247
             S+F  +   ILVLGLDNAGK++I+ R+ +GE ++S +PT+GFN   V+Y N K++V  +D
Sbjct:    11 SVFGNKEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNNIKFQV--WD 67

Query:   248 LGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVD 307
             LGG    R  W+ Y             S T ++ +     H +    DEL  A  L   +
Sbjct:    68 LGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILE-EDELKGAVVLIFAN 126

Query:   308 FRSVP 312
              + +P
Sbjct:   127 KQDLP 131

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005795 "Golgi stack" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0337 PF10_0337 "ADP-ribosylation factor-like protein" [Plasmodium falciparum (taxid:5833)]

 Score = 161 (61.7 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query:   191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
             LF  + V IL+LGLDNAGK++I+ R+ LGE +I  +PT+GFN   V Y N  ++ ++DLG
Sbjct:    12 LFSNKEVRILILGLDNAGKTTILNRLQLGE-VIQTIPTIGFNVETVNYKN-LKLQVWDLG 69

Query:   250 GSEDFRTIWKQY 261
             G    R  W+ Y
Sbjct:    70 GQSSIRPYWRCY 81

GO:0005215 "transporter activity" evidence=ISS

UNIPROTKB|Q8IJ63 PF10_0337 "ADP-ribosylation factor-like protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 161 (61.7 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query:   191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
             LF  + V IL+LGLDNAGK++I+ R+ LGE +I  +PT+GFN   V Y N  ++ ++DLG
Sbjct:    12 LFSNKEVRILILGLDNAGKTTILNRLQLGE-VIQTIPTIGFNVETVNYKN-LKLQVWDLG 69

Query:   250 GSEDFRTIWKQY 261
             G    R  W+ Y
Sbjct:    70 GQSSIRPYWRCY 81

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

DICTYBASE|DDB_G0281307 arl2 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 161 (61.7 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 34/93 (36%), Positives = 56/93 (60%)

Query:   309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
             + + IL+LGLDNAGK++I+K+  GE I ++ PT+GFN   + Y  +Y++ ++D+GG +  
Sbjct:    15 KELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMY-KEYKLNIWDIGGQKTL 73

Query:   369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
             R+ W+ Y       + V  S   R  D C+  L
Sbjct:    74 RSYWRNYYEENDAVIWVIDSSDIRRIDDCKFEL 106

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|69326 Arl2 "ADP-ribosylation factor-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query:   309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
             R V +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct:    15 RDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSL 73

Query:   369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMS 403
             R+ W+ Y  +    + V  S   +    CQ  L S
Sbjct:    74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 108

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;ISO;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=ISS

GO:0015870 "acetylcholine transport" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0019003 "GDP binding" evidence=IEA;ISO

GO:0031113 "regulation of microtubule polymerization" evidence=ISO;ISS

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA;ISO;ISS

GO:0034260 "negative regulation of GTPase activity" evidence=IEA;ISO;ISS

GO:0051297 "centrosome organization" evidence=IEA;ISO;ISS

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO;ISS

GO:0070830 "tight junction assembly" evidence=ISS

UNIPROTKB|O08697 Arl2 "ADP-ribosylation factor-like protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query:   309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
             R V +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct:    15 RDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSL 73

Query:   369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMS 403
             R+ W+ Y  +    + V  S   +    CQ  L S
Sbjct:    74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 108

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

WB|WBGene00000187 arl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 160 (61.4 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 34/73 (46%), Positives = 51/73 (69%)

Query:   191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
             LF  R + IL+LGLD AGK++I+ R+ +GE +++ +PT+GFN  +VEY N K++V  +DL
Sbjct:    11 LFGAREMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVEQVEYKNLKFQV--WDL 67

Query:   249 GGSEDFRTIWKQY 261
             GG    R  W+ Y
Sbjct:    68 GGQTSIRPYWRCY 80

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	537
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-17
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-17
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-15
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-15
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-15
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-15
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-13
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-13
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	6e-13
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	6e-13
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	7e-13
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	7e-13
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-13
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-13
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	7e-12
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	7e-12
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-11
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-11
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-11
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-11
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-11
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-11
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	5e-11
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	5e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	5e-11
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	6e-11
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	6e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-11
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-10
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-10
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	3e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-10
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-10
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-10
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-09
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-09
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	7e-08
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-07
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-07
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-07
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	3e-06
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	8e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-05
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.001
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.002

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           IL+LGLD AGK++I+ ++    +++ +PT+GFN   VEY N  +  ++D+GG +  R +W
Sbjct: 2   ILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-VKFTVWDVGGQDKIRPLW 60

Query: 259 KQY 261
           K Y
Sbjct: 61  KHY 63

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLD AGK++I+ ++    +++ +PT+GFN   VEY N  +  ++D+GG +  R +W
Sbjct: 2   ILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-VKFTVWDVGGQDKIRPLW 60

Query: 373 KQY 375
           K Y
Sbjct: 61  KHY 63

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSE 252
            + + IL+LGLDNAGK++I+ ++    I++ +PT+GFN   V Y N K+ V+  D+GG E
Sbjct: 12  NKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVW--DVGGQE 69

Query: 253 DFRTIWKQY 261
             R +W+ Y
Sbjct: 70  SLRPLWRNY 78

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSE 366
            + + IL+LGLDNAGK++I+ ++    I++ +PT+GFN   V Y N K+ V+  D+GG E
Sbjct: 12  NKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVW--DVGGQE 69

Query: 367 DFRTIWKQY 375
             R +W+ Y
Sbjct: 70  SLRPLWRNY 78

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 31/67 (46%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R + IL+LGLDNAGK++I+K+  GE I ++ PT+GFN   +EY N Y++ ++D+GG +  
Sbjct: 13  REMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEY-NGYKLNIWDVGGQKSL 71

Query: 255 RTIWKQY 261
           R+ W+ Y
Sbjct: 72  RSYWRNY 78

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 31/67 (46%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + IL+LGLDNAGK++I+K+  GE I ++ PT+GFN   +EY N Y++ ++D+GG +  
Sbjct: 13  REMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEY-NGYKLNIWDVGGQKSL 71

Query: 369 RTIWKQY 375
           R+ W+ Y
Sbjct: 72  RSYWRNY 78

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
           ILVLGLD AGK+S++  +  E  + S+VPT GFN   +   +   + L ++GGS++ R  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQD-AIMELLEIGGSQNLRKY 60

Query: 258 WKQYL 262
           WK+YL
Sbjct: 61  WKRYL 65

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
           ILVLGLD AGK+S++  +  E  + S+VPT GFN   +   +   + L ++GGS++ R  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQD-AIMELLEIGGSQNLRKY 60

Query: 372 WKQYL 376
           WK+YL
Sbjct: 61  WKRYL 65

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
           IL+LGLD AGK++I+ R+ +GE +++ +PT+GFN   V Y N K++V  +DLGG    R 
Sbjct: 2   ILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTYKNLKFQV--WDLGGQTSIRP 58

Query: 257 IWKQY 261
            W+ Y
Sbjct: 59  YWRCY 63

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL+LGLD AGK++I+ R+ +GE +++ +PT+GFN   V Y N K++V  +DLGG    R 
Sbjct: 2   ILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTYKNLKFQV--WDLGGQTSIRP 58

Query: 371 IWKQY 375
            W+ Y
Sbjct: 59  YWRCY 63

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 66.3 bits (162), Expect = 7e-13
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           +L +GLDNAGK++++  + GE    + PTVGF   ++    KYEV ++DLGG  +FR IW
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLD-KYEVCIFDLGGGANFRGIW 60

Query: 259 KQYLG 263
             Y  
Sbjct: 61  VNYYA 65

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 66.3 bits (162), Expect = 7e-13
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L +GLDNAGK++++  + GE    + PTVGF   ++    KYEV ++DLGG  +FR IW
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLD-KYEVCIFDLGGGANFRGIW 60

Query: 373 KQYLG 377
             Y  
Sbjct: 61  VNYYA 65

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 25/64 (39%), Positives = 44/64 (68%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           +L+LGLD+AGKS+++ ++    +++ +PTVGFN   ++      + ++D+GG E  RT+W
Sbjct: 2   VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVW 61

Query: 259 KQYL 262
           K YL
Sbjct: 62  KCYL 65

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 25/64 (39%), Positives = 44/64 (68%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L+LGLD+AGKS+++ ++    +++ +PTVGFN   ++      + ++D+GG E  RT+W
Sbjct: 2   VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVW 61

Query: 373 KQYL 376
           K YL
Sbjct: 62  KCYL 65

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 64.1 bits (156), Expect = 7e-12
 Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 5/74 (6%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYD 247
           SLF  + V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN   VEY N K+ +  +D
Sbjct: 11  SLFGKKEVRILMVGLDAAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNLKFTM--WD 67

Query: 248 LGGSEDFRTIWKQY 261
           +GG +  R +W+ Y
Sbjct: 68  VGGQDKLRPLWRHY 81

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLG 249
           LF  + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+G
Sbjct: 4   LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVG 61

Query: 250 GSEDFRTIWKQY 261
           G +  R +W+ Y
Sbjct: 62  GQDKIRPLWRHY 73

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 199 ILVLGLDNAGKSSIIKRIL--------GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
           +L+LGLDNAGK++ +++          G     + PTVG N   +E G    +F +DLGG
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMF-WDLGG 60

Query: 251 SEDFRTIWKQY 261
            E+ R++W +Y
Sbjct: 61  QEELRSLWDKY 71

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 313 ILVLGLDNAGKSSIIKRIL--------GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
           +L+LGLDNAGK++ +++          G     + PTVG N   +E G    +F +DLGG
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMF-WDLGG 60

Query: 365 SEDFRTIWKQY 375
            E+ R++W +Y
Sbjct: 61  QEELRSLWDKY 71

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 199 ILVLGLDNAGKSSII-KRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
           IL++GLD AGK++I+ K  LGE I++ +PT+GFN   VEY N  + V  +D+GG +  R 
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTV--WDVGGQDKIRP 59

Query: 257 IWKQY 261
           +W+ Y
Sbjct: 60  LWRHY 64

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 313 ILVLGLDNAGKSSII-KRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL++GLD AGK++I+ K  LGE I++ +PT+GFN   VEY N  + V  +D+GG +  R 
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTV--WDVGGQDKIRP 59

Query: 371 IWKQY 375
           +W+ Y
Sbjct: 60  LWRHY 64

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 27/126 (21%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
           I+ LGLDNAGK++++  +  + +   VPT+      +  GN K+  F  DLGG E  R +
Sbjct: 22  IVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTF--DLGGHEQARRV 79

Query: 258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIP------DELTSATHLPLVDFRSV 311
           WK Y   V              V+L+                 D L +   L      +V
Sbjct: 80  WKDYFPEV-----------DGIVFLVDA--ADPERFQESKEELDSLLNDEELA-----NV 121

Query: 312 PILVLG 317
           PIL+LG
Sbjct: 122 PILILG 127

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+GG + 
Sbjct: 8   KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 65

Query: 368 FRTIWKQYL-GTVSQTLLVSHSLSGRPDD 395
            R +W+ Y  GT     +V  +   R D+
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDE 94

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           + V IL+LGLDNAGK++I+K++  E I  + PT GFN   V+     ++ ++D+GG    
Sbjct: 14  QEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGF-KLNVWDIGGQRKI 72

Query: 255 RTIWKQY 261
           R  W+ Y
Sbjct: 73  RPYWRNY 79

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + V IL+LGLDNAGK++I+K++  E I  + PT GFN   V+     ++ ++D+GG    
Sbjct: 14  QEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGF-KLNVWDIGGQRKI 72

Query: 369 RTIWKQY 375
           R  W+ Y
Sbjct: 73  RPYWRNY 79

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 61.1 bits (148), Expect = 5e-11
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
           LF  + + IL++GLD AGK++I+ ++ LGE  ++ +PT+GFN   V Y N  + V  +D+
Sbjct: 8   LFGNKEMRILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVETVTYKNISFTV--WDV 64

Query: 249 GGSEDFRTIWKQY 261
           GG +  R +W+ Y
Sbjct: 65  GGQDKIRPLWRHY 77

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           I+ LGLDNAGK++++  +  + +   VPT+      +  GN K+  F  DLGG E  R +
Sbjct: 22  IVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTF--DLGGHEQARRV 79

Query: 372 WKQYLGTV 379
           WK Y   V
Sbjct: 80  WKDYFPEV 87

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+G
Sbjct: 12  LFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVG 69

Query: 250 GSEDFRTIWKQY 261
           G +  R +W+ Y
Sbjct: 70  GQDKIRPLWRHY 81

Length = 181

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
             F  +   ++++GLDNAGK++I+ + L   ++   PT+G N   + Y N     ++D+G
Sbjct: 9   LFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKN-IRFLMWDIG 67

Query: 250 GSEDFRTIWKQYL 262
           G E  R+ W  Y 
Sbjct: 68  GQESLRSSWNTYY 80

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 60.6 bits (147), Expect = 8e-11
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 362
           L   + V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN   VEY N K+ +  +D+
Sbjct: 12  LFGKKEVRILMVGLDAAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNLKFTM--WDV 68

Query: 363 GGSEDFRTIWKQY 375
           GG +  R +W+ Y
Sbjct: 69  GGQDKLRPLWRHY 81

Length = 182

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           ++++GLDNAGK++I+ + L   ++   PT+G N   + Y N     ++D+GG E  R+ W
Sbjct: 18  VIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKN-IRFLMWDIGGQESLRSSW 76

Query: 373 KQYLGTVSQTLLV 385
             Y    + T  V
Sbjct: 77  NTYY---TNTDAV 86

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 5/65 (7%)

Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL++GLD AGK++I+ ++ LGE  ++ +PT+GFN   V Y N  + V  +D+GG +  R 
Sbjct: 16  ILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVETVTYKNISFTV--WDVGGQDKIRP 72

Query: 371 IWKQY 375
           +W+ Y
Sbjct: 73  LWRHY 77

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 16  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 73

Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDS 94

Length = 181

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGNKYEV--FLYDLG 249
           F+S+ I++LGLD+AGK++++ R+     ++ VPT GFN  + +V  GN   V    +D+G
Sbjct: 1   FQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 250 GSEDFRTIWKQY 261
           G E  R +WK Y
Sbjct: 61  GQEKLRPLWKSY 72

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGNKYEV--FLYDLG 363
           F+S+ I++LGLD+AGK++++ R+     ++ VPT GFN  + +V  GN   V    +D+G
Sbjct: 1   FQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 364 GSEDFRTIWKQY 375
           G E  R +WK Y
Sbjct: 61  GQEKLRPLWKSY 72

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFR 255
           ILVLGLDN+GK++II ++      S  +VPTVGFN    + GN  +  F  D+ G   +R
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAF--DMSGQGKYR 59

Query: 256 TIWKQY 261
            +W+ Y
Sbjct: 60  GLWEHY 65

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFR 369
           ILVLGLDN+GK++II ++      S  +VPTVGFN    + GN  +  F  D+ G   +R
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAF--DMSGQGKYR 59

Query: 370 TIWKQY 375
            +W+ Y
Sbjct: 60  GLWEHY 65

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           ++ LGLD AGK++I+ ++  +  +  +PT+GFN   VEY N  +  ++D+GG    R +W
Sbjct: 2   VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKN-LKFTIWDVGGKHKLRPLW 60

Query: 259 KQY 261
           K Y
Sbjct: 61  KHY 63

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           ++ LGLD AGK++I+ ++  +  +  +PT+GFN   VEY N  +  ++D+GG    R +W
Sbjct: 2   VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKN-LKFTIWDVGGKHKLRPLW 60

Query: 373 KQY 375
           K Y
Sbjct: 61  KHY 63

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 199 ILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVEYGNKYEVFL--YDLGGSEDFR 255
           I ++GL N+GK++++  I         +PTVGFN  +V  GN   V +  +DLGG   FR
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGN---VTIKVWDLGGQPRFR 58

Query: 256 TIWKQY 261
           ++W++Y
Sbjct: 59  SMWERY 64

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 313 ILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVEYGNKYEVFL--YDLGGSEDFR 369
           I ++GL N+GK++++  I         +PTVGFN  +V  GN   V +  +DLGG   FR
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGN---VTIKVWDLGGQPRFR 58

Query: 370 TIWKQY 375
           ++W++Y
Sbjct: 59  SMWERY 64

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNRA--RVEY-GNKYEVFLYDLGGSED 367
           I+++G  N GKS+++ R+LG  I      P    N     +E  G  Y+  L D  G ED
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED 63

Query: 368 FRTIWKQYLGTVSQTLLV 385
           +  I + Y   V  +L V
Sbjct: 64  YDAIRRLYYRAVESSLRV 81

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNRA--RVEY-GNKYEVFLYDLGGSED 253
           I+++G  N GKS+++ R+LG  I      P    N     +E  G  Y+  L D  G ED
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED 63

Query: 254 FRTIWKQYLGTVS 266
           +  I + Y   V 
Sbjct: 64  YDAIRRLYYRAVE 76

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFN---RARVEYGNKYEVFLYDLGGSEDF 254
           I+VLG    GK++++ R++  E      PT+G     +    Y    ++ L+D  G E++
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS--VP 312
           R++  +Y              R     LI+          DELT      L +     VP
Sbjct: 68  RSLRPEYY-------------RGANGILIVYDSTLRESS-DELTEEWLEELRELAPDDVP 113

Query: 313 ILVLG 317
           IL++G
Sbjct: 114 ILLVG 118

Length = 219

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFN---RARVEYGNKYEVFLYDLGGSEDF 368
           I+VLG    GK++++ R++  E      PT+G     +    Y    ++ L+D  G E++
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67

Query: 369 RTIWKQY 375
           R++  +Y
Sbjct: 68  RSLRPEY 74

Length = 219

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
           IL LGLDNAGK++++  +  + +    PT       +  GN K+  F  DLGG +  R +
Sbjct: 20  ILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTF--DLGGHQQARRL 77

Query: 258 WKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPILVL 316
           WK Y   V+             VYL+      + +    EL +   L   +  +VP L+L
Sbjct: 78  WKDYFPEVNGI-----------VYLVDAYDKERFAESKRELDAL--LSDEELATVPFLIL 124

Query: 317 G 317
           G
Sbjct: 125 G 125

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           IL LGLDNAGK++++  +  + +    PT       +  GN K+  F  DLGG +  R +
Sbjct: 20  ILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTF--DLGGHQQARRL 77

Query: 372 WKQYLGTVS 380
           WK Y   V+
Sbjct: 78  WKDYFPEVN 86

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 200 LVLGLDNAGKSSIIKRILGEPI----ISLVPTVGFNRARVEY-GNKYEVFLYDLGGSEDF 254
           +V+G    GKSS++  +LG  +         T   +    E    K ++ L D  G ++F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 255 RTIW 258
             + 
Sbjct: 61  GGLG 64

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 314 LVLGLDNAGKSSIIKRILGEPI----ISLVPTVGFNRARVEY-GNKYEVFLYDLGGSEDF 368
           +V+G    GKSS++  +LG  +         T   +    E    K ++ L D  G ++F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 369 RTIW 372
             + 
Sbjct: 61  GGLG 64

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 10/76 (13%)

Query: 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVG---FNRA-RVEYGNKYEVFL 245
           + FR   ++V+G    GKSS++KR   E   + V  PTVG   F+R   +E G + ++ L
Sbjct: 1   YQFR---LIVIGDSTVGKSSLLKRFT-EGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQL 56

Query: 246 YDLGGSEDFRTIWKQY 261
           +D  G E FR+I + Y
Sbjct: 57  WDTAGQERFRSITRSY 72

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 10/74 (13%)

Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVG---FNRA-RVEYGNKYEVFLYD 361
           FR   ++V+G    GKSS++KR   E   + V  PTVG   F+R   +E G + ++ L+D
Sbjct: 3   FR---LIVIGDSTVGKSSLLKRFT-EGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWD 58

Query: 362 LGGSEDFRTIWKQY 375
             G E FR+I + Y
Sbjct: 59  TAGQERFRSITRSY 72

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
COG0488	530	Uup ATPase components of ABC transporters with dup	99.93
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.93
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.91
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.91
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.9
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.9
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.9
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.9
KOG0058|consensus	716		99.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.89
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.89
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.88
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.88
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.87
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.87
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.87
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.87
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.87
COG4988	559	CydD ABC-type transport system involved in cytochr	99.87
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.86
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.86
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.86
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.86
COG4181	228	Predicted ABC-type transport system involved in ly	99.85
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.85
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.85
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.85
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.85
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.85
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.85
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.85
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.85
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.85
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.85
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.84
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.84
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.84
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.84
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.84
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.84
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.84
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.84
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.84
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.84
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.84
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.84
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.83
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.83
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.83
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.83
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.83
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.83
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.83
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.83
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.83
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.83
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.83
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.83
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.83
KOG0059|consensus	885		99.83
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.82
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.82
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.82
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.82
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.82
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.82
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.82
KOG0057|consensus	591		99.82
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.82
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.82
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.82
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.82
KOG0055|consensus	1228		99.82
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.82
PRK11147	635	ABC transporter ATPase component; Reviewed	99.82
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.82
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.82
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.82
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.82
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.81
KOG0056|consensus	790		99.81
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.81
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.81
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.81
PRK10908	222	cell division protein FtsE; Provisional	99.81
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.81
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.81
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.81
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.81
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.81
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.81
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.81
KOG0055|consensus	1228		99.81
COG4559	259	ABC-type hemin transport system, ATPase component	99.81
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.81
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.81
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.81
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.81
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.81
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.81
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.81
COG1123	539	ATPase components of various ABC-type transport sy	99.81
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.8
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.8
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.8
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.8
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.8
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.8
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.8
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.8
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.8
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.8
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.8
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.8
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.8
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.8
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.8
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
KOG0062|consensus	582		99.8
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.8
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.8
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.8
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.79
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.79
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.79
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.79
COG4987	573	CydC ABC-type transport system involved in cytochr	99.79
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.79
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.79
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.79
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.79
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.79
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.79
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.79
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.79
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.79
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.79
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.79
PLN03232	1495	ABC transporter C family member; Provisional	99.79
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.79
PLN03073	718	ABC transporter F family; Provisional	99.79
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.78
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.78
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.78
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.78
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.78
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.78
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.78
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.78
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.78
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.78
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.78
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.78
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.78
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.78
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.78
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.78
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.78
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.78
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.77
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.77
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.77
PLN03130	1622	ABC transporter C family member; Provisional	99.77
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.77
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
COG1123	539	ATPase components of various ABC-type transport sy	99.77
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.77
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.77
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.77
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.77
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.77
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.77
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.77
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.76
PRK10938	490	putative molybdenum transport ATP-binding protein	99.76
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.76
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.76
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.76
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.76
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.76
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.76
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.76
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.76
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.76
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.76
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.76
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.76
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.76
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.76
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.76
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.76
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.76
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.76
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.75
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.75
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.75
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.75
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.75
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.75
PTZ00243	1560	ABC transporter; Provisional	99.75
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.75
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.75
KOG0927|consensus	614		99.75
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.75
COG4172	534	ABC-type uncharacterized transport system, duplica	99.75
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.75
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.75
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.74
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.74
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.74
PRK11147	635	ABC transporter ATPase component; Reviewed	99.74
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.74
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.74
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.74
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.74
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.74
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.74
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.74
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.74
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.74
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.74
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.74
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.74
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.74
cd03246	173	ABCC_Protease_Secretion This family represents the	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.74
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.74
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.74
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.74
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.74
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.73
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.73
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.73
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.73
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.73
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.73
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.73
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.73
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.73
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.73
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.73
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.73
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.73
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.73
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.73
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.73
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.73
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.73
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.73
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.72
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.72
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.72
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.72
PRK10938	490	putative molybdenum transport ATP-binding protein	99.72
COG0488	530	Uup ATPase components of ABC transporters with dup	99.72
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.72
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.72
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.72
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.72
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.72
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.72
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.71
PLN03211	659	ABC transporter G-25; Provisional	99.71
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.71
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.71
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.71
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.71
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.71
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.71
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.71
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.71
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.71
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.71
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.7
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.7
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.7
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.7
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.7
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.69
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.69
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.69
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.69
PLN03232	1495	ABC transporter C family member; Provisional	99.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.68
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.68
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.67
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.67
PLN03130	1622	ABC transporter C family member; Provisional	99.67
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.67
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.66
PLN03073	718	ABC transporter F family; Provisional	99.65
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.65
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.65
PRK13409	590	putative ATPase RIL; Provisional	99.64
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.64
KOG0054|consensus	1381		99.63
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.62
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.62
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.61
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.61
KOG0066|consensus	807		99.6
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.6
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.6
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.58
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.58
PLN03140	1470	ABC transporter G family member; Provisional	99.58
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.58
PRK13409	590	putative ATPase RIL; Provisional	99.58
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.56
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.54
COG1160	444	Predicted GTPases [General function prediction onl	99.54
COG4172	534	ABC-type uncharacterized transport system, duplica	99.54
KOG0061|consensus	613		99.53
KOG0054|consensus	1381		99.52
KOG0927|consensus	614		99.51
PLN03140	1470	ABC transporter G family member; Provisional	99.51
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.51
PRK03003	472	GTP-binding protein Der; Reviewed	99.51
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.5
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.5
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.5
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.46
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.44
PTZ00243	1560	ABC transporter; Provisional	99.44
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.43
KOG0066|consensus	807		99.41
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.39
PRK00093	435	GTP-binding protein Der; Reviewed	99.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.37
KOG0073|consensus	185		99.3
KOG0070|consensus	181		99.29
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.28
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.26
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.24
KOG0084|consensus	205		99.22
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.21
KOG0071|consensus	180		99.2
KOG0065|consensus	1391		99.2
KOG0062|consensus	582		99.19
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.18
KOG0074|consensus	185		99.17
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.17
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.13
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.12
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.11
COG4178	604	ABC-type uncharacterized transport system, permeas	99.07
KOG0094|consensus	221		99.06
KOG2355|consensus	291		99.06
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.01
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.01
KOG0080|consensus	209		99.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.99
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.99
PLN00223	181	ADP-ribosylation factor; Provisional	98.99
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.99
KOG0078|consensus	207		98.98
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.98
PTZ00133	182	ADP-ribosylation factor; Provisional	98.98
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.96
KOG0092|consensus	200		98.95
KOG0098|consensus	216		98.95
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.95
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.94
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.92
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.92
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.92
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.91
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.9
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.9
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.9
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.88
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.88
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.88
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.88
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.88
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.88
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.88
KOG0079|consensus	198		98.88
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.88
KOG0084|consensus	205		98.87
KOG0087|consensus	222		98.87
KOG0394|consensus	210		98.87
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.86
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.85
KOG0095|consensus	213		98.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.84
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.84
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.84
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.84
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.83
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.83
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.83
KOG0060|consensus	659		98.83
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.83
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.83
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.82
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.82
PTZ00369	189	Ras-like protein; Provisional	98.81
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.81
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.81
KOG0075|consensus	186		98.81
KOG0070|consensus	181		98.81
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.81
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.8
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.8
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.8
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.8
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.8
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.8
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.79
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.79
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.78
KOG0086|consensus	214		98.78
PLN00023	334	GTP-binding protein; Provisional	98.78
PLN03110	216	Rab GTPase; Provisional	98.78
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.78
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.78
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.78
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.78
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.77
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.77
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.77
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.77
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.76
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.76
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.76
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.76
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.75
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.75
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.74
KOG0092|consensus	200		98.74
PLN03108	210	Rab family protein; Provisional	98.74
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.74
PLN03118	211	Rab family protein; Provisional	98.73
KOG0073|consensus	185		98.73
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.73
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.72
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.72
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.7

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=1.7e-28  Score=232.76  Aligned_cols=210  Identities=14%  Similarity=0.121  Sum_probs=158.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.|+||...+..+                  +++.+.+|++++|+||+||||||||++|.++    ..|++|  
T Consensus         2 mi~i~~l~K~fg~~~VLkg------------------i~l~v~~Gevv~iiGpSGSGKSTlLRclN~L----E~~~~G--   57 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKG------------------ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL----EEPDSG--   57 (240)
T ss_pred             eEEEEeeeEEeCCeEEecC------------------cceeEcCCCEEEEECCCCCCHHHHHHHHHCC----cCCCCc--
Confidence            5778999999987665554                  4577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        .|.++| ..+..-.      .....++.+|+|||.+.+|+.++.            .+++...........   ....
T Consensus        58 --~I~i~g-~~~~~~~------~~~~~R~~vGmVFQ~fnLFPHlTv------------leNv~lap~~v~~~~k~eA~~~  116 (240)
T COG1126          58 --SITVDG-EDVGDKK------DILKLRRKVGMVFQQFNLFPHLTV------------LENVTLAPVKVKKLSKAEAREK  116 (240)
T ss_pred             --eEEECC-Eeccchh------hHHHHHHhcCeecccccccccchH------------HHHHHhhhHHHcCCCHHHHHHH
Confidence              999987 3332111      123345889999999999999877            333332222222221   2223


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~  381 (537)
                      +...+..+|+.+.. +.++.+|||||+||+    ++||++.. +  |+++++|  |+.+  +...+++   ..+.+++ -
T Consensus       117 A~~lL~~VGL~~ka-~~yP~qLSGGQqQRV----AIARALaM-~--P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG-m  187 (240)
T COG1126         117 ALELLEKVGLADKA-DAYPAQLSGGQQQRV----AIARALAM-D--PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-M  187 (240)
T ss_pred             HHHHHHHcCchhhh-hhCccccCcHHHHHH----HHHHHHcC-C--CCEEeecCCcccCCHHHHHHHHHHHHHHHHcC-C
Confidence            34556689998886 667999999999999    99999996 5  8999999  9999  3334444   5555554 4


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +|++.++..+.  +++|++|+++..++++++
T Consensus       188 TMivV-THEM~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         188 TMIIV-THEMGFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             eEEEE-echhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            56666 79999888766  999999999999988877

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.9e-27  Score=236.18  Aligned_cols=218  Identities=15%  Similarity=0.118  Sum_probs=169.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++++|.|+..   ....          +.+.++++|.+++|+++||+|.+|||||||++++.++    ..|++|  
T Consensus         1 mI~l~~vsK~~~~~---~~~~----------~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L----e~PtsG--   61 (339)
T COG1135           1 MIELENVSKTFGQT---GTGT----------VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL----ERPTSG--   61 (339)
T ss_pred             CeEEEeeeeeeccC---CCCc----------eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc----CCCCCc--
Confidence            35677888877653   1111          3456677899999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~  309 (537)
                        +|.++| .++.-++..+....|    +.+|++||++.++...+.            ++++...|+..+  .-+...+.
T Consensus        62 --~v~v~G-~di~~l~~~~Lr~~R----~~IGMIFQhFnLLssrTV------------~~NvA~PLeiag~~k~ei~~RV  122 (339)
T COG1135          62 --SVFVDG-QDLTALSEAELRQLR----QKIGMIFQHFNLLSSRTV------------FENVAFPLELAGVPKAEIKQRV  122 (339)
T ss_pred             --eEEEcC-EecccCChHHHHHHH----hhccEEeccccccccchH------------HhhhhhhHhhcCCCHHHHHHHH
Confidence              999998 777766654444444    889999999998876554            334443333222  11112344


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v  382 (537)
                      ...+.++|+++.. ..++.+|||||+|||    ++|||++. +  |++++.|  |+.+     ..+..++.++.++-+.+
T Consensus       123 ~elLelVgL~dk~-~~yP~qLSGGQKQRV----aIARALa~-~--P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglT  194 (339)
T COG1135         123 AELLELVGLSDKA-DRYPAQLSGGQKQRV----AIARALAN-N--PKILLCDEATSALDPETTQSILELLKDINRELGLT  194 (339)
T ss_pred             HHHHHHcCChhhh-ccCchhcCcchhhHH----HHHHHHhc-C--CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCE
Confidence            5667799999775 666999999999999    99999996 4  8999999  9998     45555667888888888


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      |+++ +|.++.....|  +.+|+.|+++..|+..++
T Consensus       195 IvlI-THEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         195 IVLI-THEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             EEEE-echHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            8888 99999888766  999999999999998887

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.93  E-value=1.3e-27  Score=259.71  Aligned_cols=228  Identities=17%  Similarity=0.119  Sum_probs=158.9

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.+.++++.||...+..+                  +++.+.+|++|||||+|||||||||++|+|.    ..|+.| 
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~------------------~~l~~~~G~riGLvG~NGaGKSTLLkilaG~----~~~~~G-   58 (530)
T COG0488           2 SMITLENLSLAYGDRPLLEN------------------VSLTLNPGERIGLVGRNGAGKSTLLKILAGE----LEPDSG-   58 (530)
T ss_pred             ceEEEeeeEEeeCCceeecC------------------CcceeCCCCEEEEECCCCCCHHHHHHHHcCC----CcCCCC-
Confidence            35678889998877766665                  3466789999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhh-HHHHhhhhccccCCCCCCCccceeeE-EeecCcccccCCcccccccCcCCcccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLGRPDSRTCQVY-LIMCGVHQVSGIPDELTSATHLPLVDF  308 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l~~~~~~~il~-v~Ds~~~~~~~l~~~l~~~~~l~~~~~  308 (537)
                         +|...++..+....+....... ......+.. +............+.. ..|.+...+..+...+..++.|...++
T Consensus        59 ---~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~  134 (530)
T COG0488          59 ---EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEG-FGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR  134 (530)
T ss_pred             ---eEeecCCceEEEeCCCCCcCCCccHHHHHHhh-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence               9888876777776663221110 111100000 0000000000000000 000000111222333344455666667


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlV  385 (537)
                      +...+..+|++..  ...+.+|||||+.|+    ++|++++. +  |++++||  |+|++.....| +.|+....+++|+
T Consensus       135 ~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv----~LA~aL~~-~--pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvii  205 (530)
T COG0488         135 AEEALLGLGFPDE--DRPVSSLSGGWRRRV----ALARALLE-E--PDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIV  205 (530)
T ss_pred             HHHHHhcCCCCcc--cCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEE
Confidence            7777788888876  566999999999999    99999996 4  8999999  99998888888 9999888888888


Q ss_pred             EeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        386 SHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       386 vdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      + |||+.+++.++  ++-++.|++..+.+|++
T Consensus       206 V-SHDR~FLd~V~t~I~~ld~g~l~~y~Gny~  236 (530)
T COG0488         206 V-SHDRYFLDNVATHILELDRGKLTPYKGNYS  236 (530)
T ss_pred             E-eCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence            8 99999999988  77788999999999985

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=7.1e-27  Score=224.97  Aligned_cols=218  Identities=17%  Similarity=0.161  Sum_probs=168.5

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++.+.||++.+.++                  +++.+.+|+..+++|++|+|||||++.|.|+    ..|++|
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~------------------v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl----l~P~~G   63 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDG------------------VDLDVPRGEILAILGGSGSGKSTLLRLILGL----LRPDKG   63 (263)
T ss_pred             cceEEEeeeeeecCCEEEecC------------------ceeeecCCcEEEEECCCCcCHHHHHHHHhcc----CCCCCC
Confidence            457888999999888777766                  4577889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc---
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV---  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~---  306 (537)
                          +|.++| .++....    +......++++|++||...+|..++.            ++|+.-.+.....++..   
T Consensus        64 ----eI~i~G-~~i~~ls----~~~~~~ir~r~GvlFQ~gALFssltV------------~eNVafplre~~~lp~~~i~  122 (263)
T COG1127          64 ----EILIDG-EDIPQLS----EEELYEIRKRMGVLFQQGALFSSLTV------------FENVAFPLREHTKLPESLIR  122 (263)
T ss_pred             ----eEEEcC-cchhccC----HHHHHHHHhheeEEeeccccccccch------------hHhhheehHhhccCCHHHHH
Confidence                999987 4443222    12233456889999999998876665            34444333222222211   


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~  379 (537)
                      ..+..++..+|+.+..-..++.+|||||+.|+    ++|||+.. +  |+++++|  |+|+     ..+..++..+.+.-
T Consensus       123 ~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv----aLARAial-d--Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~l  195 (263)
T COG1127         123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRV----ALARAIAL-D--PELLFLDEPTSGLDPISAGVIDELIRELNDAL  195 (263)
T ss_pred             HHHHHHHHhcCCChhhhhhCchhhcchHHHHH----HHHHHHhc-C--CCEEEecCCCCCCCcchHHHHHHHHHHHHHhh
Confidence            12235567899998855788999999999999    99999997 6  8999999  9999     34445556666667


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ..+++++ +||..+...++  ++++.+|+++..|++.++.+
T Consensus       196 g~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         196 GLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             CCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            7788888 89999888765  99999999999999998743

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=5.4e-26  Score=220.03  Aligned_cols=212  Identities=15%  Similarity=0.153  Sum_probs=156.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++++|.|+.....                  .+++|.+.+|+.+++|||+||||||+|++|.+.    +.||+|  
T Consensus         1 MI~~~nvsk~y~~~~av------------------~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL----iept~G--   56 (309)
T COG1125           1 MIEFENVSKRYGNKKAV------------------DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL----IEPTSG--   56 (309)
T ss_pred             CceeeeeehhcCCceee------------------eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc----cCCCCc--
Confidence            46778899988744433                  445688999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++..+|.   .++|    +.+|||-|...+|++++..            +++.-.. .+.+|.   ...+
T Consensus        57 --~I~i~g-~~i~~~d~---~~LR----r~IGYviQqigLFPh~Tv~------------eNIa~VP-~L~~w~k~~i~~r  113 (309)
T COG1125          57 --EILIDG-EDISDLDP---VELR----RKIGYVIQQIGLFPHLTVA------------ENIATVP-KLLGWDKERIKKR  113 (309)
T ss_pred             --eEEECC-eecccCCH---HHHH----HhhhhhhhhcccCCCccHH------------HHHHhhh-hhcCCCHHHHHHH
Confidence              999997 77766665   3444    8899999999999987761            1111100 112221   2234


Q ss_pred             CCccEEEeccCc-cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-HHH----HHHHhcCC
Q psy16304        309 RSVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-TIW----KQYLGTVS  380 (537)
Q Consensus       309 ~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-~l~----~~~~~~~~  380 (537)
                      ....+.++|++. .-..+++++|||||+||+    |++||+.. +  |+++++|  .+.++.+. ..+    ..+-++.+
T Consensus       114 ~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV----Gv~RALAa-d--P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~  186 (309)
T COG1125         114 ADELLDLVGLDPSEYADRYPHELSGGQQQRV----GVARALAA-D--PPILLMDEPFGALDPITRKQLQEEIKELQKELG  186 (309)
T ss_pred             HHHHHHHhCCCHHHHhhcCchhcCcchhhHH----HHHHHHhc-C--CCeEeecCCccccChhhHHHHHHHHHHHHHHhC
Confidence            556677889864 356888999999999999    99999996 5  8999999  55553322 222    23333445


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      .+++.+ +||++++..+.  +.+|+.|+++.+++|.++..
T Consensus       187 kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~  225 (309)
T COG1125         187 KTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA  225 (309)
T ss_pred             CEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence            556666 78887776654  99999999999999998743

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=7.7e-26  Score=233.02  Aligned_cols=209  Identities=16%  Similarity=0.151  Sum_probs=156.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      ..+.++++.|.||+.....                  ++++.+.+|+++.|+||+||||||||++|+|.    ..|++| 
T Consensus         4 ~~l~i~~v~k~yg~~~av~------------------~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf----e~p~~G-   60 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVD------------------DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF----EQPSSG-   60 (352)
T ss_pred             ceEEEEeeeeecCCeeEEe------------------cceeeecCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc-
Confidence            4677888999888444333                  35688899999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~  307 (537)
                         +|.++| .++..     ....+    +.+++|||+..+|++++.            .+++..-|........   ..
T Consensus        61 ---~I~l~G-~~i~~-----lpp~k----R~ig~VFQ~YALFPHltV------------~~NVafGLk~~~~~~~~~i~~  115 (352)
T COG3842          61 ---EILLDG-EDITD-----VPPEK----RPIGMVFQSYALFPHMTV------------EENVAFGLKVRKKLKKAEIKA  115 (352)
T ss_pred             ---eEEECC-EECCC-----CChhh----cccceeecCcccCCCCcH------------HHHhhhhhhhcCCCCHHHHHH
Confidence               999987 44432     33333    789999999999999887            4555544442221211   12


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~  380 (537)
                      +....+.++|+.+.++ +.+.+|||||+||+    ++||+++. +  |++++||  .+.++     ..+..++.+.++.+
T Consensus       116 rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRV----ALARAL~~-~--P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g  187 (352)
T COG3842         116 RVEEALELVGLEGFAD-RKPHQLSGGQQQRV----ALARALVP-E--PKVLLLDEPLSALDAKLREQMRKELKELQRELG  187 (352)
T ss_pred             HHHHHHHHcCchhhhh-hChhhhChHHHHHH----HHHHHhhc-C--cchhhhcCcccchhHHHHHHHHHHHHHHHHhcC
Confidence            4456677899998875 44999999999999    99999995 4  8999999  66662     22223344445555


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+.+ +||.+++....  +.+|++|++...|++.++
T Consensus       188 iT~i~V-THDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei  224 (352)
T COG3842         188 ITFVYV-THDQEEALAMSDRIAVMNDGRIEQVGTPEEI  224 (352)
T ss_pred             CeEEEE-ECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence            555555 78887776554  999999999999999987

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.91  E-value=9.8e-26  Score=218.96  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=147.5

Q ss_pred             ccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE
Q psy16304        154 GIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  233 (537)
Q Consensus       154 ~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~  233 (537)
                      .++++.|.|+.....              +.+-..++|.+++|++++|+||+||||||||++|.|.    ..||+|    
T Consensus         3 ~~~~v~k~y~~~~~~--------------~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l----d~pt~G----   60 (226)
T COG1136           3 ELKNVSKIYGLGGEK--------------VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL----DKPTSG----   60 (226)
T ss_pred             EEeeeEEEeccCCcc--------------eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCc----
Confidence            466777766543211              1233456788899999999999999999999999999    999999    


Q ss_pred             EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccCCc
Q psy16304        234 RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFRSV  311 (537)
Q Consensus       234 ~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~~~  311 (537)
                      .+.++| .++...+.   .......++.+|+|||++.+++.++.            .+++.-.+......  ........
T Consensus        61 ~v~i~g-~d~~~l~~---~~~~~~R~~~iGfvFQ~~nLl~~ltv------------~ENv~lpl~~~~~~~~~~~~~~~~  124 (226)
T COG1136          61 EVLING-KDLTKLSE---KELAKLRRKKIGFVFQNFNLLPDLTV------------LENVELPLLIAGKSAGRRKRAAEE  124 (226)
T ss_pred             eEEECC-EEcCcCCH---HHHHHHHHHhEEEECccCCCCCCCCH------------HHHHHhHHHHcCCChhHHHHHHHH
Confidence            888887 55544332   23334556889999999998887666            22222111111111  11122334


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIl  384 (537)
                      .+..+|+.+..+...+.+|||||+||+    ++|||++. +  |++++.|  |+.+     +....++..+.++.+.+++
T Consensus       125 l~~~lgl~~~~~~~~p~eLSGGqqQRV----AIARAL~~-~--P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii  197 (226)
T COG1136         125 LLEVLGLEDRLLKKKPSELSGGQQQRV----AIARALIN-N--PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTII  197 (226)
T ss_pred             HHHhcCChhhhccCCchhcCHHHHHHH----HHHHHHhc-C--CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEE
Confidence            455788887766577999999999999    99999996 5  8999999  8777     3333444566666667888


Q ss_pred             EEeCCCcchhhhhh-hhhhcCCc
Q psy16304        385 VSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       385 Vvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      ++ |||...+..++ ++.+.+|+
T Consensus       198 ~V-THd~~lA~~~dr~i~l~dG~  219 (226)
T COG1136         198 MV-THDPELAKYADRVIELKDGK  219 (226)
T ss_pred             EE-cCCHHHHHhCCEEEEEeCCe
Confidence            88 89999888777 88888888

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.90  E-value=6.5e-25  Score=224.20  Aligned_cols=208  Identities=18%  Similarity=0.230  Sum_probs=152.1

Q ss_pred             hcccccCCCcccC-CCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        152 LMGIQNVPNFQTS-SVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       152 li~~~~l~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .+.++++.|.|+. ..+.                  +++++.+.+|+++||+||||||||||+++|+|.    ..|++| 
T Consensus         4 ~i~~~~l~k~~~~~~~~l------------------~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl----~~p~~G-   60 (293)
T COG1131           4 VIEVRNLTKKYGGDKTAL------------------DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL----LKPTSG-   60 (293)
T ss_pred             eeeecceEEEeCCCCEEE------------------eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----cCCCce-
Confidence            3456788888773 3333                  346688889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-----
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-----  305 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-----  305 (537)
                         +|.+.| .++.     .  . ...++..+|+++|++.+++.++.                .+.+..+..+..     
T Consensus        61 ---~i~i~G-~~~~-----~--~-~~~~~~~igy~~~~~~~~~~lT~----------------~e~l~~~~~l~~~~~~~  112 (293)
T COG1131          61 ---EILVLG-YDVV-----K--E-PAKVRRRIGYVPQEPSLYPELTV----------------RENLEFFARLYGLSKEE  112 (293)
T ss_pred             ---EEEEcC-EeCc-----c--C-HHHHHhheEEEccCCCCCccccH----------------HHHHHHHHHHhCCChhH
Confidence               888887 3221     1  1 23344789999999997776665                233333222211     


Q ss_pred             -cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHh
Q psy16304        306 -VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLG  377 (537)
Q Consensus       306 -~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~  377 (537)
                       ..+....+..+|+.... ...+..||+||+||+    +++.++++ +  |++++||  |+|++  ....+|   +.+.+
T Consensus       113 ~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl----~ia~aL~~-~--P~lliLDEPt~GLDp~~~~~~~~~l~~l~~  184 (293)
T COG1131         113 AEERIEELLELFGLEDKA-NKKVRTLSGGMKQRL----SIALALLH-D--PELLILDEPTSGLDPESRREIWELLRELAK  184 (293)
T ss_pred             HHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHH----HHHHHHhc-C--CCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence             12344566688888744 556999999999999    99999997 5  8999999  99993  223333   45555


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      +++.+|+++ +|..++.+..+  +.++++|+++..+...++...
T Consensus       185 ~g~~tvlis-sH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         185 EGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             CCCcEEEEe-CCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            544566666 99999888744  999999999999977776544

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.90  E-value=1.5e-24  Score=201.89  Aligned_cols=209  Identities=19%  Similarity=0.178  Sum_probs=154.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++++|.|+.+...                 -..+++.+.+|+++-|+||+|||||||+|+|.+.    ..||.|  
T Consensus         1 mI~f~~V~k~Y~~g~~a-----------------L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~----e~pt~G--   57 (223)
T COG2884           1 MIRFENVSKAYPGGREA-----------------LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE----ERPTRG--   57 (223)
T ss_pred             CeeehhhhhhcCCCchh-----------------hhCceEeecCceEEEEECCCCCCHHHHHHHHHhh----hcCCCc--
Confidence            35678889988766311                 2235677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--cccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~~  309 (537)
                        ++.++| .++.-+.-...    +..++.+|.|||+..++.+.+.            ++++.-.+...+.-+.  ..+.
T Consensus        58 --~i~~~~-~dl~~l~~~~i----P~LRR~IGvVFQD~rLL~~~tv------------yeNVA~pL~v~G~~~~~i~~rV  118 (223)
T COG2884          58 --KILVNG-HDLSRLKGREI----PFLRRQIGVVFQDFRLLPDRTV------------YENVALPLRVIGKPPREIRRRV  118 (223)
T ss_pred             --eEEECC-eeccccccccc----chhhheeeeEeeeccccccchH------------hhhhhhhhhccCCCHHHHHHHH
Confidence              999987 66655443222    3455899999999998877665            5555554544432221  1233


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. ..++.+||||++||+    ++|+|+++ .  |++++-|  |..+     ..+..+++.+.+. .++
T Consensus       119 ~~~L~~VgL~~k~-~~lP~~LSGGEQQRv----aIARAiV~-~--P~vLlADEPTGNLDp~~s~~im~lfeeinr~-GtT  189 (223)
T COG2884         119 SEVLDLVGLKHKA-RALPSQLSGGEQQRV----AIARAIVN-Q--PAVLLADEPTGNLDPDLSWEIMRLFEEINRL-GTT  189 (223)
T ss_pred             HHHHHHhccchhh-hcCccccCchHHHHH----HHHHHHcc-C--CCeEeecCCCCCCChHHHHHHHHHHHHHhhc-CcE
Confidence            4567789998876 667999999999999    99999996 4  8999999  7666     3334444555444 456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      +++. +||....+...  +..+++|+++.+..
T Consensus       190 Vl~A-THd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         190 VLMA-THDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             EEEE-eccHHHHHhccCcEEEEeCCEEEeccc
Confidence            6666 89988887766  88889999876543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.90  E-value=9.1e-25  Score=216.17  Aligned_cols=212  Identities=15%  Similarity=0.143  Sum_probs=147.7

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.+++++..|++..+..                  +++|.+.+|++++|+||||||||||||+|+|.    ..|..|   
T Consensus         3 L~~~~ls~~y~~~~il~------------------~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~----l~p~~G---   57 (258)
T COG1120           3 LEVENLSFGYGGKPILD------------------DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL----LKPKSG---   57 (258)
T ss_pred             eEEEEEEEEECCeeEEe------------------cceEEecCCcEEEEECCCCCCHHHHHHHHhcc----CCCCCC---
Confidence            45666777666444333                  45677889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCcc--ccC
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV--DFR  309 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~--~~~  309 (537)
                       +|.++| ..+.-+..       ....+.+++|+|.+.     ...-+.|.| ....++.    ...++..+...  ...
T Consensus        58 -~V~l~g-~~i~~~~~-------kelAk~ia~vpQ~~~-----~~~~~tV~d~V~~GR~p----~~~~~~~~~~~D~~~v  119 (258)
T COG1120          58 -EVLLDG-KDIASLSP-------KELAKKLAYVPQSPS-----APFGLTVYELVLLGRYP----HLGLFGRPSKEDEEIV  119 (258)
T ss_pred             -EEEECC-CchhhcCH-------HHHhhhEEEeccCCC-----CCCCcEEeehHhhcCCc----ccccccCCCHhHHHHH
Confidence             999997 55443332       223378999999976     333444555 2222221    11222211111  122


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. .+.+.+|||||+||+    .+|+++++ +  |++++||  |++++     +..++.+++.++.+.+
T Consensus       120 ~~aL~~~~~~~la-~r~~~~LSGGerQrv----~iArALaQ-~--~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~t  191 (258)
T COG1120         120 EEALELLGLEHLA-DRPVDELSGGERQRV----LIARALAQ-E--TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT  191 (258)
T ss_pred             HHHHHHhCcHHHh-cCcccccChhHHHHH----HHHHHHhc-C--CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCE
Confidence            3345677877765 445999999999999    99999996 4  8999999  88883     3444556666565555


Q ss_pred             EEEEeCCCcchhhhh--hhhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRC--QVYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~--~i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++ .||...+...  .+++|++|++++.|++++.
T Consensus       192 vv~v-lHDlN~A~ryad~~i~lk~G~i~a~G~p~ev  226 (258)
T COG1120         192 VVMV-LHDLNLAARYADHLILLKDGKIVAQGTPEEV  226 (258)
T ss_pred             EEEE-ecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence            6666 6777655443  3999999999999999876

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.4e-24  Score=215.42  Aligned_cols=211  Identities=17%  Similarity=0.168  Sum_probs=151.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++.++.|+......                  .+++.++.|+.++|+|||||||||||++|+|+    ..|+.|  
T Consensus         2 ~i~i~~~~~~~~~~~a~~------------------di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL----e~p~~G--   57 (345)
T COG1118           2 SIRINNVKKRFGAFGALD------------------DISLDIKSGELVALLGPSGAGKSTLLRIIAGL----ETPDAG--   57 (345)
T ss_pred             ceeehhhhhhcccccccc------------------cceeeecCCcEEEEECCCCCcHHHHHHHHhCc----CCCCCc--
Confidence            355667777666554443                  34566889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc----CCccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH----LPLVD  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~----l~~~~  307 (537)
                        .|.++| ..  +.|...    .....+.+|+|||+..+|+.++.            .+++..-+.....    .+...
T Consensus        58 --~I~~~~-~~--l~D~~~----~~~~~R~VGfvFQ~YALF~HmtV------------a~NIAFGl~~~~~~p~~~~~r~  116 (345)
T COG1118          58 --RIRLNG-RV--LFDVSN----LAVRDRKVGFVFQHYALFPHMTV------------ADNIAFGLKVRKERPSEAEIRA  116 (345)
T ss_pred             --eEEECC-Ee--ccchhc----cchhhcceeEEEechhhcccchH------------HhhhhhcccccccCCChhhHHH
Confidence              999988 21  123321    13334789999999999998776            2333332222211    11112


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch----h-hHHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS----E-DFRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl----~-~~~~l~~~~~~~~~  380 (537)
                      +....+..+.+.+.+ ..++.+|||||+||+    ++|+++.. .  |++++||  .+.+    . ..+..++++....+
T Consensus       117 rv~elL~lvqL~~la-~ryP~QLSGGQrQRV----ALARALA~-e--P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~  188 (345)
T COG1118         117 RVEELLRLVQLEGLA-DRYPAQLSGGQRQRV----ALARALAV-E--PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG  188 (345)
T ss_pred             HHHHHHHHhcccchh-hcCchhcChHHHHHH----HHHHHhhc-C--CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC
Confidence            334446677788887 455999999999999    99999996 4  8999999  4445    2 22223356666666


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+.+ +||.++.....  +++|++|+|...|++.+.
T Consensus       189 ~ttvfV-THD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         189 VTTVFV-THDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             ceEEEE-eCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            777777 89988887655  999999999999999887

>KOG0058|consensus

Probab=99.89  E-value=1.6e-24  Score=235.71  Aligned_cols=261  Identities=14%  Similarity=0.080  Sum_probs=193.2

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      ..++..|+..+..+-.+.++-+++|++++-++.++...  -|...           .-.+.++|++..|+++.     . 
T Consensus       418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~-----------~G~IeF~~VsFaYP~Rp-----~-  480 (716)
T KOG0058|consen  418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHL-----------QGVIEFEDVSFAYPTRP-----D-  480 (716)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccc-----------cceEEEEEeeeecCCCC-----C-
Confidence            46888999999999999999999999999776654331  11122           34667788888776552     1 


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                               +.+-++++|++++|++++||||+|+||||+.++|...    |.|++|    +|.+|| +++..+|-     
T Consensus       481 ---------~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf----Y~PtsG----~IllDG-~~i~~~~~-----  537 (716)
T KOG0058|consen  481 ---------VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF----YDPTSG----RILLDG-VPISDINH-----  537 (716)
T ss_pred             ---------chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCC----eEEECC-eehhhcCH-----
Confidence                     2234456788889999999999999999999999999    999999    999997 77765554     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIK  328 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~  328 (537)
                        ..+++.+|.|.|+|.+|.. ..++|.+..+ .+.++...+.+.   .+++.+++.....     .+|..+.       
T Consensus       538 --~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T-----~VGEkG~-------  603 (716)
T KOG0058|consen  538 --KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNT-----VVGEKGS-------  603 (716)
T ss_pred             --HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccc-----ccCCccc-------
Confidence              3455899999999999987 7788888777 333333222211   1222333222222     4554433       


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-H-HHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-K-QYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM  402 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~-~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll  402 (537)
                      +||||||||+    ++|||++. +  |.++|||  |+.++...+.. + .+.+. .+-+++|+ .|...+....+ ++++
T Consensus       604 qLSGGQKQRI----AIARALlr-~--P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvI-AHRLSTV~~Ad~Ivvi  675 (716)
T KOG0058|consen  604 QLSGGQKQRI----AIARALLR-N--PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVI-AHRLSTVRHADQIVVI  675 (716)
T ss_pred             cccchHHHHH----HHHHHHhc-C--CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEE-ehhhhHhhhccEEEEE
Confidence            4999999999    99999996 4  8999999  99996665544 3 33222 23578888 89999999877 9999


Q ss_pred             cCCcEEEEecccchhh
Q psy16304        403 SCNCQVYLISAKNLSN  418 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~~  418 (537)
                      ++|++...|+.+++.+
T Consensus       676 ~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  676 DKGRVVEMGTHDELLS  691 (716)
T ss_pred             cCCeEEecccHHHHhh
Confidence            9999999999988854

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.4e-24  Score=211.40  Aligned_cols=194  Identities=17%  Similarity=0.143  Sum_probs=135.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+                  -.+++|.+.+||+++||||+|||||||||+|+|.    ..|+.|  
T Consensus         3 ~l~i~~v~~~f~~~~v------------------l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL----~~p~~G--   58 (248)
T COG1116           3 LLEIEGVSKSFGGVEV------------------LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL----EKPTSG--   58 (248)
T ss_pred             eEEEEeeEEEeCceEE------------------eccceeEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            4566777777766322                  2345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~  309 (537)
                        +|.++| ..+   .-+     .    ..+++|||+..+++..+.            .+|+.-.+....  .-+...++
T Consensus        59 --~V~~~g-~~v---~~p-----~----~~~~~vFQ~~~LlPW~Tv------------~~NV~l~l~~~~~~~~e~~~~a  111 (248)
T COG1116          59 --EVLLDG-RPV---TGP-----G----PDIGYVFQEDALLPWLTV------------LDNVALGLELRGKSKAEARERA  111 (248)
T ss_pred             --eEEECC-ccc---CCC-----C----CCEEEEeccCcccchhhH------------HhhheehhhccccchHhHHHHH
Confidence              999887 222   111     1    358999999999988665            333333222221  11112234


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. ..++.+|||||+||+    ++|++++. +  |++++||  .+.++....     .+.++.++.+.+
T Consensus       112 ~~~L~~VgL~~~~-~~~P~qLSGGMrQRV----aiARAL~~-~--P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T  183 (248)
T COG1116         112 KELLELVGLAGFE-DKYPHQLSGGMRQRV----AIARALAT-R--PKLLLLDEPFGALDALTREELQDELLRLWEETRKT  183 (248)
T ss_pred             HHHHHHcCCcchh-hcCccccChHHHHHH----HHHHHHhc-C--CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE
Confidence            5567789999887 566999999999999    99999997 5  8999999  666633322     122333444455


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCC
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCN  405 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G  405 (537)
                      ++++ |||.+++-.+.  +++|.++
T Consensus       184 vllV-THdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         184 VLLV-THDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             EEEE-eCCHHHHHhhhCEEEEecCC
Confidence            5555 67777666544  7777763

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.2e-24  Score=206.60  Aligned_cols=219  Identities=13%  Similarity=0.084  Sum_probs=156.0

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++|+++.|+......              .+.+++++.+.+|+++||+|++|+|||||.++|+|.    ..|+.| 
T Consensus         2 ~~l~v~nl~~~y~~~~~~~--------------~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl----~~p~~G-   62 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAF--------------HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL----EKPSSG-   62 (252)
T ss_pred             ceEEEeceEEEecCCcchh--------------hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc----cCCCCc-
Confidence            3678899999887765332              234567788999999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC--CccceeeEEeecCcccccCCcccccccCcCC-ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP--DSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~--~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-~~~  307 (537)
                         +|.++| ..+.     ...+. ....+.+.+|||++.-..  ..+.            .+.+.+.+.. ..+. ...
T Consensus        63 ---~I~~~G-~~~~-----~~~~~-~~~~~~VQmVFQDp~~SLnP~~tv------------~~~l~Epl~~-~~~~~~~~  119 (252)
T COG1124          63 ---SILLDG-KPLA-----PKKRA-KAFYRPVQMVFQDPYSSLNPRRTV------------GRILSEPLRP-HGLSKSQQ  119 (252)
T ss_pred             ---eEEECC-cccC-----ccccc-hhhccceeEEecCCccccCcchhH------------HHHHhhhhcc-CCccHHHH
Confidence               999887 2221     11111 123367899999987221  1111            0001111111 1111 111


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~  380 (537)
                      +....+..+|++..-..+++++|||||+||+    ++|+|+.. +  |+++++|  |+.++.     +.+++.++.++.+
T Consensus       120 ~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi----aIARAL~~-~--PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~  192 (252)
T COG1124         120 RIAELLDQVGLPPSFLDRRPHELSGGQRQRI----AIARALIP-E--PKLLILDEPTSALDVSVQAQILNLLLELKKERG  192 (252)
T ss_pred             HHHHHHHHcCCCHHHHhcCchhcChhHHHHH----HHHHHhcc-C--CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence            2344566889988888888999999999999    99999995 4  8999999  888833     2333355556777


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      .+++++ +||....+..|  +++|++|+++..+...++.+.
T Consensus       193 lt~l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         193 LTYLFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             ceEEEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            788888 89999888766  999999999999888887543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3.8e-24  Score=219.42  Aligned_cols=209  Identities=18%  Similarity=0.104  Sum_probs=151.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.|.||+..+..                  .+++.+..|++++|+|||||||||||++|+|+    ..|++|  
T Consensus         3 ~i~l~~v~K~yg~~~~l~------------------~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL----e~~~~G--   58 (338)
T COG3839           3 ELELKNVRKSFGSFEVLK------------------DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL----EEPTSG--   58 (338)
T ss_pred             EEEEeeeEEEcCCceeee------------------cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            467788899888653222                  24577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~  309 (537)
                        +|.++| .++..+     .    -.++.+++|||+..+|+.++.            ++++...+.....-  +...+.
T Consensus        59 --~I~i~g-~~vt~l-----~----P~~R~iamVFQ~yALyPhmtV------------~~Niaf~Lk~~~~~k~ei~~rV  114 (338)
T COG3839          59 --EILIDG-RDVTDL-----P----PEKRGIAMVFQNYALYPHMTV------------YENIAFGLKLRGVPKAEIDKRV  114 (338)
T ss_pred             --eEEECC-EECCCC-----C----hhHCCEEEEeCCccccCCCcH------------HHHhhhhhhhCCCchHHHHHHH
Confidence              999987 444321     1    223779999999999999887            44444333322111  111233


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~v  382 (537)
                      ......+++.+..+. .+.+|||||+||+    +++|+++. +  |+++++|  .+.++     ..+..+..+.++.+.+
T Consensus       115 ~eva~~L~l~~lL~r-~P~~LSGGQrQRV----AlaRAlVr-~--P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T  186 (338)
T COG3839         115 KEVAKLLGLEHLLNR-KPLQLSGGQRQRV----ALARALVR-K--PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT  186 (338)
T ss_pred             HHHHHHcCChhHHhc-CcccCChhhHHHH----HHHHHHhc-C--CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence            344557888888744 4999999999999    99999996 4  8999999  66672     2222333444444555


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++.+ +||..++....  +.+|.+|++...|++.++-
T Consensus       187 ~IYV-THDq~EAmtladri~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         187 TIYV-THDQVEAMTLADRIVVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             EEEE-cCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence            5555 78887776544  8999999999999999873

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.7e-24  Score=243.11  Aligned_cols=225  Identities=13%  Similarity=0.096  Sum_probs=143.9

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++++++.|+...+..+                  ++|.+.+|+++||+|+||||||||+++|+|.    ..|++|   
T Consensus         2 i~i~nls~~~g~~~~l~~------------------vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~----~~pd~G---   56 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDN------------------ATATINPGQKVGLVGKNGCGKSTLLALLKNE----ISADGG---   56 (638)
T ss_pred             EEEEEEEEEeCCceeecC------------------cEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence            567888888776544433                  4577889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEe-ecCcccccCCcccccccCcCCccccCCc
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~-Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                       +|.++++..+.+..+......+    ..+++++|....+......+.... ......+..+...+.....+....+...
T Consensus        57 -~I~~~~~~~i~~~~q~~~~~~~----~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (638)
T PRK10636         57 -SYTFPGNWQLAWVNQETPALPQ----PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS  131 (638)
T ss_pred             -eEEecCCCEEEEEecCCCCCCC----CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence             9988875555554432111111    234554443221110000000000 0000000000000001111111223344


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHS  388 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvds  388 (537)
                      .+..+|+........+.+|||||++|+    +++++++. +  |++++||  |+|++.....| ..+++...++++++ +
T Consensus       132 ~L~~lgl~~~~~~~~~~~LSgGerqRv----~LA~aL~~-~--P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv-s  203 (638)
T PRK10636        132 LLHGLGFSNEQLERPVSDFSGGWRMRL----NLAQALIC-R--SDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI-S  203 (638)
T ss_pred             HHHhCCCCchhhcCchhhcCHHHHHHH----HHHHHHcc-C--CCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE-e
Confidence            566788863333556899999999999    99999996 5  8999999  99997766666 77777666778888 8


Q ss_pred             CCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        389 LSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       389 hd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      ||+.+...++  ++++++|++..+.++.+
T Consensus       204 Hd~~~l~~~~d~i~~L~~G~i~~~~g~~~  232 (638)
T PRK10636        204 HDRDFLDPIVDKIIHIEQQSLFEYTGNYS  232 (638)
T ss_pred             CCHHHHHHhcCEEEEEeCCEEEEecCCHH
Confidence            9999988755  88999999987777764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.6e-24  Score=201.82  Aligned_cols=220  Identities=14%  Similarity=0.070  Sum_probs=153.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+.++.|.|++.                 +.+...++|...+|+++||+|+|||||||+|++|.+.    +.|++|  
T Consensus         1 Ml~v~~l~K~y~~~-----------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl----L~P~~G--   57 (245)
T COG4555           1 MLEVTDLTKSYGSK-----------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL----LIPDSG--   57 (245)
T ss_pred             CeeeeehhhhccCH-----------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh----ccCCCc--
Confidence            35677888887762                 2234556788999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC------Cc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL------PL  305 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l------~~  305 (537)
                        .+.++|      +|+.   +.....++.+|.++.+-.+|.+++.                ++.+.++..+      +.
T Consensus        58 --~v~idg------~d~~---~~p~~vrr~IGVl~~e~glY~RlT~----------------rEnl~~Fa~L~~l~~~~~  110 (245)
T COG4555          58 --KVTIDG------VDTV---RDPSFVRRKIGVLFGERGLYARLTA----------------RENLKYFARLNGLSRKEI  110 (245)
T ss_pred             --eEEEee------cccc---cChHHHhhhcceecCCcChhhhhhH----------------HHHHHHHHHHhhhhhhHH
Confidence              777776      3432   2223445788988865555544443                2222222211      12


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-HHHHHHHhc--CC
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-TIWKQYLGT--VS  380 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-~l~~~~~~~--~~  380 (537)
                      .++.+.....+|+....+.+ +..||.|++|++    ++|+++++ +  |.++++|  |+|++... ..+.++..+  ..
T Consensus       111 kari~~l~k~l~l~~~~~rR-v~~~S~G~kqkV----~iARAlvh-~--P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e  182 (245)
T COG4555         111 KARIAELSKRLQLLEYLDRR-VGEFSTGMKQKV----AIARALVH-D--PSILVLDEPTSGLDIRTRRKFHDFIKQLKNE  182 (245)
T ss_pred             HHHHHHHHHHhChHHHHHHH-HhhhchhhHHHH----HHHHHHhc-C--CCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence            23334444577777776555 899999999999    99999998 6  8999999  99995332 233444332  23


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhccchhhhhh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKKSERDETN  429 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~~~~~~~~  429 (537)
                      +-++++++|++.+.+.+|  ++++++|.++..|+.+.+..+.....+++.+
T Consensus       183 gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f  233 (245)
T COG4555         183 GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF  233 (245)
T ss_pred             CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHH
Confidence            556666699999998666  8999999999999998775544444444443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.88  E-value=8.6e-24  Score=217.43  Aligned_cols=209  Identities=18%  Similarity=0.191  Sum_probs=145.7

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|++...                  ..+++|.+.+|+++||+||||||||||+++|+|.    ..|++|
T Consensus         5 ~~~i~i~~l~k~~~~~~~------------------l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl----~~p~~G   62 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKLV------------------VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL----THPDAG   62 (306)
T ss_pred             CceEEEEeEEEEECCeEE------------------EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce
Confidence            346788999998764322                  3345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cCC--
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HLP--  304 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l~--  304 (537)
                          ++.++| .++...        ....++.+++++|++.++...+.                .+.+....   ...  
T Consensus        63 ----~v~i~G-~~~~~~--------~~~~~~~ig~v~q~~~~~~~~tv----------------~e~l~~~~~~~~~~~~  113 (306)
T PRK13537         63 ----SISLCG-EPVPSR--------ARHARQRVGVVPQFDNLDPDFTV----------------RENLLVFGRYFGLSAA  113 (306)
T ss_pred             ----EEEECC-Eecccc--------hHHHHhcEEEEeccCcCCCCCcH----------------HHHHHHHHHHcCCCHH
Confidence                888887 443211        11234779999999886654333                11111110   000  


Q ss_pred             -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHh--
Q psy16304        305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLG--  377 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~--  377 (537)
                       ...+....+..+|+.... .+.+..||+||+||+    ++++++++ +  |++++||  |+|++  ....+|+.+.+  
T Consensus       114 ~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la~aL~~-~--P~lllLDEPt~gLD~~~~~~l~~~l~~l~  185 (306)
T PRK13537        114 AARALVPPLLEFAKLENKA-DAKVGELSGGMKRRL----TLARALVN-D--PDVLVLDEPTTGLDPQARHLMWERLRSLL  185 (306)
T ss_pred             HHHHHHHHHHHHcCCchHh-cCchhhCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence             001122334466776544 444899999999999    99999997 5  8999999  99993  33444443322  


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ..+.+|+++ +|++.+.+.++  ++++++|+++..++..++..
T Consensus       186 ~~g~till~-sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        186 ARGKTILLT-THFMEEAERLCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             hCCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            224566666 99999887654  89999999999998887743

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=2e-23  Score=207.58  Aligned_cols=202  Identities=14%  Similarity=0.166  Sum_probs=150.8

Q ss_pred             cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      .-..+.+|.+..|+++.|.|.+|||||||++++.++    +.||.|    +|.++| .++.-.+.   ..++...++.++
T Consensus        42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL----iept~G----~ilv~g-~di~~~~~---~~Lr~~Rr~~~s  109 (386)
T COG4175          42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL----IEPTRG----EILVDG-KDIAKLSA---AELRELRRKKIS  109 (386)
T ss_pred             EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc----CCCCCc----eEEECC-cchhcCCH---HHHHHHHhhhhh
Confidence            345577889999999999999999999999999999    999999    999997 55544444   466777789999


Q ss_pred             ccccCCCCCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +|||.+.++|+.+.            .+++..-++..  ...+...++...+..+|+.+.. .+++++|||||+|||   
T Consensus       110 MVFQ~FaLlPhrtV------------l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-~~yp~eLSGGMqQRV---  173 (386)
T COG4175         110 MVFQSFALLPHRTV------------LENVAFGLEVQGVPKAEREERALEALELVGLEGYA-DKYPNELSGGMQQRV---  173 (386)
T ss_pred             hhhhhhccccchhH------------hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-hcCcccccchHHHHH---
Confidence            99999999998665            22232222211  1111222344567789999886 566999999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhh--HHHHHHHHH---hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYL---GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~---~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       ++|+|+.. +  |+++++|  .+.++-  ..++.++++   ++-+.+|+.+ +||.+++-.+-  +.+|++|+++..|+
T Consensus       174 -GLARAla~-~--~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFi-tHDLdEAlriG~rIaimkdG~ivQ~Gt  248 (386)
T COG4175         174 -GLARALAN-D--PDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI-THDLDEALRIGDRIAIMKDGEIVQVGT  248 (386)
T ss_pred             -HHHHHHcc-C--CCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEE-ecCHHHHHhccceEEEecCCeEEEeCC
Confidence             99999996 5  8999999  666621  122333332   3444556666 78888777655  99999999999999


Q ss_pred             ccchhh
Q psy16304        413 AKNLSN  418 (537)
Q Consensus       413 nkdl~~  418 (537)
                      +.++..
T Consensus       249 p~eIl~  254 (386)
T COG4175         249 PEEILL  254 (386)
T ss_pred             HHHHHc
Confidence            998743

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=2.6e-24  Score=208.13  Aligned_cols=222  Identities=13%  Similarity=0.102  Sum_probs=157.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .+..++++.|.||+-...+                  .++|.+.+|++++|+|||||||||++|+|+|.    +.|+.| 
T Consensus         3 ~lL~v~~l~k~FGGl~Al~------------------~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~----~~P~~G-   59 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVN------------------DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF----YKPSSG-   59 (250)
T ss_pred             ceeeeccceeecCCEEEEe------------------ceeEEEcCCeEEEEECCCCCCceeeeeeeccc----ccCCCc-
Confidence            3556788888887654444                  45678889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC-----Cc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-----PL  305 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l-----~~  305 (537)
                         +|.+.| .++.     +... ....+..+.--||...+|+.++..--..+- ...+.. ....+ +...+     +.
T Consensus        60 ---~v~~~G-~~it-----~l~p-~~iar~Gi~RTFQ~~rlF~~lTVlENv~va-~~~~~~-~~~~l-~~~~~~~~e~~~  126 (250)
T COG0411          60 ---TVIFRG-RDIT-----GLPP-HRIARLGIARTFQITRLFPGLTVLENVAVG-AHARLG-LSGLL-GRPRARKEEREA  126 (250)
T ss_pred             ---eEEECC-cccC-----CCCH-HHHHhccceeecccccccCCCcHHHHHHHH-hhhhhh-hhhhh-ccccchhhHHHH
Confidence               999887 4443     3222 234456778889999988887752100000 000000 00001 11111     11


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~  378 (537)
                      ..++...+..+|+.+.. ......||+|+++++    .+|+++.. +  |++++||  ++|+     +.....++++.+.
T Consensus       127 ~e~A~~~Le~vgL~~~a-~~~A~~LsyG~qR~L----EIArALa~-~--P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~  198 (250)
T COG0411         127 RERARELLEFVGLGELA-DRPAGNLSYGQQRRL----EIARALAT-Q--PKLLLLDEPAAGLNPEETEELAELIRELRDR  198 (250)
T ss_pred             HHHHHHHHHHcCCchhh-cchhhcCChhHhHHH----HHHHHHhc-C--CCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence            22345667789998876 555899999999999    99999996 5  8999999  8888     3444455666665


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.+++++ -||+...-..+  +++|+.|++++.|++.+..
T Consensus       199 ~g~tillI-EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~  238 (250)
T COG0411         199 GGVTILLI-EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR  238 (250)
T ss_pred             CCcEEEEE-EeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence            66788888 89988776555  9999999999999999873

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=8.3e-24  Score=203.29  Aligned_cols=224  Identities=14%  Similarity=0.142  Sum_probs=150.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++++.|++....                 ...+++.+++||.|+|||++||||||||++|.|.    ..|+.| 
T Consensus         2 ~~i~~~nl~k~yp~~~~a-----------------L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl----~d~t~G-   59 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQA-----------------LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL----VDPTSG-   59 (258)
T ss_pred             ceEEEeeeeeecCCCcee-----------------eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc----cCCCcc-
Confidence            467889999988533211                 2234677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDF  308 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~  308 (537)
                         ++.++| .++.-  ..+  +....++..+|++||.+.+.++++..-- |. ..  +......+...++-+..  ...
T Consensus        60 ---~i~~~g-~~i~~--~~~--k~lr~~r~~iGmIfQ~~nLv~r~sv~~N-Vl-~g--rl~~~s~~~slfglfsk~dk~~  127 (258)
T COG3638          60 ---EILFNG-VQITK--LKG--KELRKLRRDIGMIFQQFNLVPRLSVLEN-VL-LG--RLGYTSTWRSLFGLFSKEDKAQ  127 (258)
T ss_pred             ---eEEecc-cchhc--cch--HHHHHHHHhceeEeccCCcccccHHHHH-HH-hh--hcccchHHHHHhCCCCHHHHHH
Confidence               998887 43322  222  2234566899999999998776544100 00 00  00000000011111111  112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~  381 (537)
                      +-..+..+|+....-.+ ..+|||||+|||    ++|++++. +  |++++-|  ++++     ......++++.++.+.
T Consensus       128 Al~aLervgi~~~A~qr-a~~LSGGQQQRV----aIARaL~Q-~--pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~  199 (258)
T COG3638         128 ALDALERVGILDKAYQR-ASTLSGGQQQRV----AIARALVQ-Q--PKIILADEPVASLDPESAKKVMDILKDINQEDGI  199 (258)
T ss_pred             HHHHHHHcCcHHHHHHH-hccCCcchhHHH----HHHHHHhc-C--CCEEecCCcccccChhhHHHHHHHHHHHHHHcCC
Confidence            22335577877666444 789999999999    99999996 4  7899989  7777     4455566676666555


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++. .|+.+.+...+  ++-+++|+++++|...++.
T Consensus       200 Tvi~n-LH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~  236 (258)
T COG3638         200 TVIVN-LHQVDLAKKYADRIIGLKAGRIVFDGPASELT  236 (258)
T ss_pred             EEEEE-echHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence            55555 77776665433  8889999999999988763

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.87  E-value=1.1e-23  Score=236.27  Aligned_cols=273  Identities=17%  Similarity=0.153  Sum_probs=186.3

Q ss_pred             eeccchhh-hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCC
Q psy16304         87 VLYNMYKA-EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSS  165 (537)
Q Consensus        87 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~  165 (537)
                      |.|||... .+.|+.+|...+++++....+++++.++++.+++-+...-+...   ..     -..-+.+++++..|+..
T Consensus       413 iAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---~~-----~~g~I~~~nvsf~y~~~  484 (709)
T COG2274         413 VAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHL---PK-----LQGEIEFENVSFRYGPD  484 (709)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc---cc-----cCceEEEEEEEEEeCCC
Confidence            45676654 67899999999999999999999999999977653332211111   00     02245666666665543


Q ss_pred             CCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE
Q psy16304        166 VLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL  245 (537)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~  245 (537)
                      .    |            ....++++.+++|+++||||+||||||||+|+|+|.    +.|+.|    +|.++| +++..
T Consensus       485 ~----~------------~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl----y~p~~G----~I~~dg-~dl~~  539 (709)
T COG2274         485 D----P------------PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQG----RILLDG-VDLND  539 (709)
T ss_pred             C----c------------chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EeHHh
Confidence            1    1            123456788889999999999999999999999999    999999    999997 77766


Q ss_pred             eecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEeccCc
Q psy16304        246 YDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVLGLDN  320 (537)
Q Consensus       246 ~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~llGl~~  320 (537)
                      .|.       ..+++.+++|+|++.++.. ..+++.+.-. .+.++..+.   ...-+.+.+++....     ..+|..+
T Consensus       540 i~~-------~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~-----t~v~E~G  607 (709)
T COG2274         540 IDL-------ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYD-----TPVGEGG  607 (709)
T ss_pred             cCH-------HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc-----cccccCC
Confidence            665       3344899999999998765 2333222111 111111000   000011122211111     1445444


Q ss_pred             cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhcC-CEEEEEEeCCCcchhh
Q psy16304        321 AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGTV-SQTLLVSHSLSGRPDD  395 (537)
Q Consensus       321 ~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~~-~~vIlVvdshd~~~~~  395 (537)
                      .+       ||||||||+    ++||+++. +  |++++||  |++++...+  +.+.+.+-. +.+++++ +|......
T Consensus       608 ~~-------LSGGQrQrl----alARaLl~-~--P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~I-aHRl~ti~  672 (709)
T COG2274         608 AN-------LSGGQRQRL----ALARALLS-K--PKILLLDEATSALDPETEAIILQNLLQILQGRTVIII-AHRLSTIR  672 (709)
T ss_pred             CC-------CCHHHHHHH----HHHHHhcc-C--CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEE-EccchHhh
Confidence            44       999999999    99999997 5  8999999  999954443  335544432 2466666 78989888


Q ss_pred             hhh-hhhhcCCcEEEEecccchhhh
Q psy16304        396 RCQ-VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       396 ~~~-i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      .++ +++|++|+++..|+..++.+.
T Consensus       673 ~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         673 SADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             hccEEEEccCCceeccCCHHHHHHh
Confidence            887 999999999999999988654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=4.6e-23  Score=198.54  Aligned_cols=210  Identities=16%  Similarity=0.161  Sum_probs=154.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.+++++|.||+..+.++                  ++|.+.+|+++|++|+|||||||++++|.|.    +.||+|  
T Consensus         2 ~L~ie~vtK~Fg~k~av~~------------------isf~v~~G~i~GllG~NGAGKTTtfRmILgl----le~~~G--   57 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDN------------------ISFEVPPGEIFGLLGPNGAGKTTTFRMILGL----LEPTEG--   57 (300)
T ss_pred             ceEEecchhccCceeeecc------------------eeeeecCCeEEEeecCCCCCccchHHHHhcc----CCccCc--
Confidence            3567888898877655544                  5677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc-----
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV-----  306 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~-----  306 (537)
                        +|.++| .           .........|||+|.+-.+|+.++.                .+.+.++..+...     
T Consensus        58 --~I~~~g-~-----------~~~~~~~~rIGyLPEERGLy~k~tv----------------~dql~yla~LkGm~~~e~  107 (300)
T COG4152          58 --EITWNG-G-----------PLSQEIKNRIGYLPEERGLYPKMTV----------------EDQLKYLAELKGMPKAEI  107 (300)
T ss_pred             --eEEEcC-c-----------chhhhhhhhcccChhhhccCccCcH----------------HHHHHHHHHhcCCcHHHH
Confidence              999987 2           2233445789999999998887665                2223222222211     


Q ss_pred             -ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304        307 -DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT  378 (537)
Q Consensus       307 -~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~  378 (537)
                       .+...++..+++.+.. ++.+.+||.|++|++    .+-.+++| .  |++++||  .+|++-.     .....++.+ 
T Consensus       108 ~~~~~~wLer~~i~~~~-~~kIk~LSKGnqQKI----QfisaviH-e--PeLlILDEPFSGLDPVN~elLk~~I~~lk~-  178 (300)
T COG4152         108 QKKLQAWLERLEIVGKK-TKKIKELSKGNQQKI----QFISAVIH-E--PELLILDEPFSGLDPVNVELLKDAIFELKE-  178 (300)
T ss_pred             HHHHHHHHHhccccccc-cchHHHhhhhhhHHH----HHHHHHhc-C--CCEEEecCCccCCChhhHHHHHHHHHHHHh-
Confidence             1233455566766664 555999999999999    98899997 5  8999999  8888433     333333332 


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhccchh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKKSER  425 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~~~~  425 (537)
                       .++.+++++|.++-.+.+|  +.++++|+.+.+|+..++++.+....+
T Consensus       179 -~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~  226 (300)
T COG4152         179 -EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL  226 (300)
T ss_pred             -cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE
Confidence             3444444589999888766  889999999999999998877765443

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.87  E-value=2.7e-23  Score=216.43  Aligned_cols=209  Identities=16%  Similarity=0.187  Sum_probs=145.2

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+....                  ..+++|.+.+|+++||+||||||||||+++|+|.    +.|++|
T Consensus        39 ~~~i~i~nl~k~y~~~~~------------------l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl----~~p~~G   96 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKAV------------------VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM----TSPDAG   96 (340)
T ss_pred             ceeEEEEEEEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCce
Confidence            346788999998764332                  2345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cCC--
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HLP--  304 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l~--  304 (537)
                          ++.++| .++.  +.      ...++..+++++|++.++...+.                .+.+....   ...  
T Consensus        97 ----~i~i~G-~~~~--~~------~~~~~~~ig~v~q~~~~~~~~tv----------------~e~l~~~~~~~~~~~~  147 (340)
T PRK13536         97 ----KITVLG-VPVP--AR------ARLARARIGVVPQFDNLDLEFTV----------------RENLLVFGRYFGMSTR  147 (340)
T ss_pred             ----EEEECC-EECC--cc------hHHHhccEEEEeCCccCCCCCcH----------------HHHHHHHHHHcCCCHH
Confidence                999887 4332  11      12234679999999876554332                11111000   000  


Q ss_pred             -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHh--
Q psy16304        305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLG--  377 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~--  377 (537)
                       ........+..+|+.... ...+..||+||+||+    ++++++++ +  |++++||  |+|++  ....+|+.+.+  
T Consensus       148 ~~~~~~~~ll~~~~L~~~~-~~~~~~LS~G~kqrv----~lA~aL~~-~--P~lLiLDEPt~gLD~~~r~~l~~~l~~l~  219 (340)
T PRK13536        148 EIEAVIPSLLEFARLESKA-DARVSDLSGGMKRRL----TLARALIN-D--PQLLILDEPTTGLDPHARHLIWERLRSLL  219 (340)
T ss_pred             HHHHHHHHHHHHcCCchhh-CCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence             001112234467776554 444899999999999    99999997 5  8999999  99993  33344443322  


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ..+.+++++ +|+....+.++  ++++++|+++..+++.++..
T Consensus       220 ~~g~tilis-SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        220 ARGKTILLT-THFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             hCCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            234566666 99999887654  89999999999998887744

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.8e-23  Score=221.09  Aligned_cols=265  Identities=18%  Similarity=0.176  Sum_probs=178.4

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      ..++|+++++..+|--+.+.++.+.++.+++++....+...+++.       .--...-+.++++...|+.+..      
T Consensus       269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~-------~~~~~~ei~~~~l~~~y~~g~~------  335 (559)
T COG4988         269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV-------ANEPPIEISLENLSFRYPDGKP------  335 (559)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------ccCCCceeeecceEEecCCCCc------
Confidence            357999999999999999999999999999977553322221111       0000122344577776655421      


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                                 +...+++++++|++++|||++|||||||++.|.|.    ..|+.|    ++.++| .++...+.     
T Consensus       336 -----------~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~----~~~~~G----~I~vng-~~l~~l~~-----  390 (559)
T COG4988         336 -----------ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF----LAPTQG----EIRVNG-IDLRDLSP-----  390 (559)
T ss_pred             -----------ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc----CCCCCc----eEEECC-ccccccCH-----
Confidence                       12335677889999999999999999999999999    999999    999997 55544333     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhhhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIKRI  330 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~~L  330 (537)
                        ..|++.+++|+|++.++.. ..+++.+.-. .+.+...++   ++...-.+.... ..-+ ..+|..+.+       |
T Consensus       391 --~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~a---l~~a~l~~~v~~-p~GLdt~ige~G~~-------L  457 (559)
T COG4988         391 --EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAA---LDQAGLLEFVPK-PDGLDTVIGEGGAG-------L  457 (559)
T ss_pred             --HHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHH---HHHhcHHHhhcC-CCcccchhccCCCC-------C
Confidence              5566999999999998876 3444333222 222221111   111100000000 0001 134444444       9


Q ss_pred             cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304        331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSC  404 (537)
Q Consensus       331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~  404 (537)
                      ||||+||+    ++||+++. +  ++++++|  |+|++...+  +.+.+.+.. +.+++++ +|+.......+ ++++++
T Consensus       458 SgGQ~QRl----aLARAll~-~--~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i-tHrl~~~~~~D~I~vld~  529 (559)
T COG4988         458 SGGQAQRL----ALARALLS-P--ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI-THRLEDAADADRIVVLDN  529 (559)
T ss_pred             CHHHHHHH----HHHHHhcC-C--CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE-EcChHHHhcCCEEEEecC
Confidence            99999999    99999997 4  7999999  999944433  334443322 3566666 89988887766 999999


Q ss_pred             CcEEEEecccchh
Q psy16304        405 NCQVYLISAKNLS  417 (537)
Q Consensus       405 G~ii~~g~nkdl~  417 (537)
                      |+++..|.+.++.
T Consensus       530 G~l~~~g~~~~L~  542 (559)
T COG4988         530 GRLVEQGTHEELS  542 (559)
T ss_pred             CceeccCCHHHHh
Confidence            9999999999884

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=6.2e-23  Score=202.28  Aligned_cols=212  Identities=15%  Similarity=0.139  Sum_probs=141.9

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++|+...|++..+..                  ++++.+.+|++++|+||||||||||+|.|.|.    ..|+.| 
T Consensus         3 ~~i~v~nl~v~y~~~~vl~------------------~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl----l~p~~G-   59 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLE------------------DISLSVEKGEITALIGPNGAGKSTLLKAILGL----LKPSSG-   59 (254)
T ss_pred             cEEEEeeeEEEECCEeeee------------------ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CcCCcc-
Confidence            4567788888776543333                  34577889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCC--ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLP--LVD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~--~~~  307 (537)
                         +|.+.| ..+..     . .-    ..++|||||...+-   ...-+.|.| ....+    .....++..+.  ...
T Consensus        60 ---~i~~~g-~~~~~-----~-~~----~~~IgYVPQ~~~~d---~~fP~tV~d~V~~g~----~~~~g~~~~~~~~d~~  118 (254)
T COG1121          60 ---EIKIFG-KPVRK-----R-RK----RLRIGYVPQKSSVD---RSFPITVKDVVLLGR----YGKKGWFRRLNKKDKE  118 (254)
T ss_pred             ---eEEEcc-ccccc-----c-cc----CCeEEEcCcccccC---CCCCcCHHHHHHccC----cccccccccccHHHHH
Confidence               888776 21111     1 10    25699999976421   111112222 00111    11111222221  112


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~  380 (537)
                      .....+..+|+.+..+.. +.+|||||+||+    -+|||++. +  |++++||  +.|+     ..+..++.++.++ +
T Consensus       119 ~v~~aL~~Vgm~~~~~r~-i~~LSGGQ~QRV----~lARAL~~-~--p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g  189 (254)
T COG1121         119 KVDEALERVGMEDLRDRQ-IGELSGGQKQRV----LLARALAQ-N--PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G  189 (254)
T ss_pred             HHHHHHHHcCchhhhCCc-ccccCcHHHHHH----HHHHHhcc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence            344567788998877544 999999999999    99999996 4  8999999  8887     3444555666666 5


Q ss_pred             EEEEEEeCCCcchhhh-hhhhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDR-CQVYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~-~~i~ll~~G~ii~~g~nkdl  416 (537)
                      .+|+++ +||...... ++.++.=++.+++.|.+.+.
T Consensus       190 ~tIl~v-tHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~  225 (254)
T COG1121         190 KTVLMV-THDLGLVMAYFDRVICLNRHLIASGPPEEV  225 (254)
T ss_pred             CEEEEE-eCCcHHhHhhCCEEEEEcCeeEeccChhhc
Confidence            667777 788877665 44444556678888888876

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.86  E-value=2e-23  Score=217.37  Aligned_cols=216  Identities=16%  Similarity=0.132  Sum_probs=145.9

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++++.+.|+...  ..            ..+..+++|.+.+|+++||+|+||||||||+++|+|.    ..|++|   
T Consensus         2 I~~~~lsk~y~~~~--~~------------~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl----~~p~~G---   60 (343)
T TIGR02314         2 IKLSNITKVFHQGT--KT------------IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL----ERPTSG---   60 (343)
T ss_pred             EEEEEEEEEECCCC--cc------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce---
Confidence            56778888775311  00            1133456788889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccC
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFR  309 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~  309 (537)
                       +|.++| .++..++.   ... ...++.++++||++.+++..+.            .+++...+. ...+.   ...+.
T Consensus        61 -~I~i~G-~~i~~~~~---~~l-~~~r~~Ig~v~Q~~~l~~~~tv------------~eni~~~~~-~~~~~~~~~~~~v  121 (343)
T TIGR02314        61 -SVIVDG-QDLTTLSN---SEL-TKARRQIGMIFQHFNLLSSRTV------------FGNVALPLE-LDNTPKDEIKRKV  121 (343)
T ss_pred             -EEEECC-EECCcCCH---HHH-HHHhcCEEEEECCccccccCcH------------HHHHHHHHH-HcCCCHHHHHHHH
Confidence             999987 44322211   111 1234679999999887654332            111111000 00110   01122


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |++++.     +..+++++.++.+.+
T Consensus       122 ~e~l~~vgL~~~~-~~~~~~LSgGqkQRV----~IARAL~~-~--P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~t  193 (343)
T TIGR02314       122 TELLALVGLGDKH-DSYPSNLSGGQKQRV----AIARALAS-N--PKVLLCDEATSALDPATTQSILELLKEINRRLGLT  193 (343)
T ss_pred             HHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            3345567887654 556899999999999    99999996 5  8999999  999932     223334554443566


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++ +|+++.....+  +++|++|+++..|...++.
T Consensus       194 iili-TH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       194 ILLI-THEMDVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             EEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            7777 89998876543  9999999999988877763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=7.1e-23  Score=200.11  Aligned_cols=234  Identities=16%  Similarity=0.163  Sum_probs=155.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhccc---ccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLD---LRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  228 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~  228 (537)
                      ++.++++.|.|.-..........++.+..   ..+.++..+||.+.+|+++|++|+|||||||++|+|+|.    ..|++
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl----l~p~~   78 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL----LLPTS   78 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc----cccCC
Confidence            45677888877543322222222333333   235678899999999999999999999999999999999    99999


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc-cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCcc
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS-QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV  306 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~-Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~  306 (537)
                      |    .+.++|-..+   +      .+....+.+++|+ |...          +-+| ...+.+. +...+..+..-.+.
T Consensus        79 G----~v~V~G~~Pf---~------~~~~~~~~~~~v~gqk~q----------l~Wdlp~~ds~~-v~~~Iy~Ipd~~F~  134 (325)
T COG4586          79 G----KVRVNGKDPF---R------RREEYLRSIGLVMGQKLQ----------LWWDLPALDSLE-VLKLIYEIPDDEFA  134 (325)
T ss_pred             C----eEEecCcCcc---h------hHHHHHHHHHHHhhhhhe----------eeeechhhhhHH-HHHHHHhCCHHHHH
Confidence            9    8888772111   1      1122223344432 2211          1222 1111100 00000111111111


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~  379 (537)
                      .+......++++.+.-+.. ++.||-|||+|.    .++.++++ +  |+++|||  |-|+     ...+++++.|.+..
T Consensus       135 ~r~~~l~eiLdl~~~lk~~-vr~LSlGqRmra----eLaaaLLh-~--p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~  206 (325)
T COG4586         135 ERLDFLTEILDLEGFLKWP-VRKLSLGQRMRA----ELAAALLH-P--PKVLFLDEPTVGLDVNAQANIREFLKEYNEER  206 (325)
T ss_pred             HHHHHHHHHhcchhhhhhh-hhhccchHHHHH----HHHHHhcC-C--CcEEEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence            2223334467777666555 999999999999    99999998 6  8999999  8888     56677778888888


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhcc
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKK  422 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~  422 (537)
                      .++|+.+ +|++......|  +..++.|+++..|+-+.+..++..
T Consensus       207 ~aTVllT-TH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~  250 (325)
T COG4586         207 QATVLLT-THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP  250 (325)
T ss_pred             CceEEEE-ecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence            8888888 99999888766  888999999999998888776654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.5e-23  Score=216.40  Aligned_cols=211  Identities=16%  Similarity=0.142  Sum_probs=146.1

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|++...                  ..++++.+.+|++++|+||||||||||+++|+|.    ..|++|
T Consensus         4 ~~~l~~~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G   61 (351)
T PRK11432          4 KNFVVLKNITKRFGSNTV------------------IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL----EKPTEG   61 (351)
T ss_pred             CcEEEEEeEEEEECCeEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC----CCCCce
Confidence            346778888888764322                  2335677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVD  307 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~  307 (537)
                          +|.++| ..+.     ...    ..++.++++||++.+++.++.            .+++...+..  ........
T Consensus        62 ----~I~~~g-~~i~-----~~~----~~~r~ig~vfQ~~~lfp~~tv------------~eNi~~~l~~~~~~~~~~~~  115 (351)
T PRK11432         62 ----QIFIDG-EDVT-----HRS----IQQRDICMVFQSYALFPHMSL------------GENVGYGLKMLGVPKEERKQ  115 (351)
T ss_pred             ----EEEECC-EECC-----CCC----HHHCCEEEEeCCcccCCCCCH------------HHHHHHHHhHcCCCHHHHHH
Confidence                999987 4432     111    223679999999998876554            1111111110  00000011


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~  380 (537)
                      +....+..+|+.+.. .+.+.+|||||+||+    +++++++. +  |++++||  +++++.     ....+..+.++.+
T Consensus       116 ~v~~~l~~~gl~~~~-~r~~~~LSgGq~QRV----aLARaL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  187 (351)
T PRK11432        116 RVKEALELVDLAGFE-DRYVDQISGGQQQRV----ALARALIL-K--PKVLLFDEPLSNLDANLRRSMREKIRELQQQFN  187 (351)
T ss_pred             HHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            223344466776654 455899999999999    99999996 4  8999999  888832     2223344444445


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+++++ +||..+...++  +++|++|++...+++.++.
T Consensus       188 ~tii~v-THd~~e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        188 ITSLYV-THDQSEAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             CEEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            566666 89988876543  9999999999999888763

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=9.8e-23  Score=186.70  Aligned_cols=192  Identities=15%  Similarity=0.150  Sum_probs=141.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-..+++.+++|+.++||||+|+|||||+-.++|.    ..|++|    +|.+.| ..+...|-.+...   ...+.+|+
T Consensus        25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL----d~~ssG----eV~l~G-~~L~~ldEd~rA~---~R~~~vGf   92 (228)
T COG4181          25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL----DDPSSG----EVRLLG-QPLHKLDEDARAA---LRARHVGF   92 (228)
T ss_pred             EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC----CCCCCc----eEEEcC-cchhhcCHHHHHH---hhccceeE
Confidence            44556788899999999999999999999999999    899999    888887 5555555433333   33478999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCc--CCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |||.+.+.+.++.            .+++.--+...++  -+....+...+..+|+.... +.++.+||||++|||    
T Consensus        93 VFQSF~Lip~ltA------------lENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl-~HyP~qLSGGEQQRV----  155 (228)
T COG4181          93 VFQSFHLIPNLTA------------LENVALPLELRGESSADSRAGAKALLEAVGLGKRL-THYPAQLSGGEQQRV----  155 (228)
T ss_pred             EEEeeeccccchh------------hhhccchhhhcCCccccHHHHHHHHHHHhCccccc-ccCccccCchHHHHH----
Confidence            9999998887766            3333332322221  11222344556678888775 667999999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY  409 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~  409 (537)
                      ++|+++..  . |+++|-|  |..+     +.+..++-.+.++...+++++ +||+.....|. .+.|..|++..
T Consensus       156 AiARAfa~--~-P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlV-THD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         156 ALARAFAG--R-PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV-THDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHHHhcC--C-CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEE-eCCHHHHHhhhheeeeecceecc
Confidence            99999995  3 8999999  6666     333444444455666677777 89999888777 88888888753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.9e-22  Score=198.84  Aligned_cols=196  Identities=17%  Similarity=0.147  Sum_probs=135.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|+.++|+|+||||||||+++++|.    ..|++|    .|.++| ..+..      .......++.+|+|||
T Consensus        22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL----l~p~~G----~v~~~g-~~~~~------~~~~~~~~~~vG~VfQ   86 (235)
T COG1122          22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL----LKPTSG----EVLVDG-LDTSS------EKSLLELRQKVGLVFQ   86 (235)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHcCc----CcCCCC----EEEECC-eeccc------hhhHHHhhcceEEEEE
Confidence            45677889999999999999999999999999    999999    888876 33321      1112334488999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++....-...        ..+....-...+.. ..-+...+....+..+|+.+. ....+..|||||+||+    ++|.+
T Consensus        87 npd~q~~~~t--------V~~evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRv----aIA~v  152 (235)
T COG1122          87 NPDDQLFGPT--------VEDEVAFGLENLGL-PREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRV----AIAGV  152 (235)
T ss_pred             CcccccccCc--------HHHHHhhchhhcCC-CHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeH----HhhHH
Confidence            9862111000        00000000000000 000112233455667888777 4566999999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++. .  |++++||  |+|+     +....++.++.++.+.+++++ +||++.... ++ +++|++|+++..|.+.++
T Consensus       153 La~-~--P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i  226 (235)
T COG1122         153 LAM-G--PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVLDDGKILADGDPAEI  226 (235)
T ss_pred             HHc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence            986 5  8999999  9999     344445566666655567777 888887776 33 999999999999988766

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=9.7e-23  Score=213.54  Aligned_cols=190  Identities=17%  Similarity=0.131  Sum_probs=133.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+||||||||||+++|+|.    ..|++|    +|.++| ..+..     ...    .++.+++|||
T Consensus        22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl----~~p~~G----~I~~~g-~~i~~-----~~~----~~r~ig~v~Q   83 (356)
T PRK11650         22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL----ERITSG----EIWIGG-RVVNE-----LEP----ADRDIAMVFQ   83 (356)
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC----CCCCce----EEEECC-EECCC-----CCH----HHCCEEEEeC
Confidence            45677889999999999999999999999999    999999    999987 43321     111    2267999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.+++.++.            .+++...+.. ....   ...+....+..+|+.+.. .+.+.+|||||+||+    ++
T Consensus        84 ~~~lfp~~tv------------~eNi~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~QRv----al  145 (356)
T PRK11650         84 NYALYPHMSV------------RENMAYGLKI-RGMPKAEIEERVAEAARILELEPLL-DRKPRELSGGQRQRV----AM  145 (356)
T ss_pred             CccccCCCCH------------HHHHHhHHhh-cCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHH----HH
Confidence            9988876544            1111111100 0010   011223445567877654 555899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |++++||  |++++..     ...+..+.++.+.+++++ +||..+....+  +++|++|+++..|++.+
T Consensus       146 ARAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~l~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        146 GRAIVR-E--PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV-THDQVEAMTLADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence            999996 4  8999999  9998322     223344444434566666 88887766543  89999999999998887


Q ss_pred             hh
Q psy16304        416 LS  417 (537)
Q Consensus       416 l~  417 (537)
                      +.
T Consensus       222 ~~  223 (356)
T PRK11650        222 VY  223 (356)
T ss_pred             HH
Confidence            63

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=9.7e-23  Score=201.62  Aligned_cols=196  Identities=16%  Similarity=0.132  Sum_probs=127.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+..++.    .....++..+++++
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~v~   83 (235)
T cd03261          17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL----LRPDSG----EVLIDG-EDISGLSE----AELYRLRRRMGMLF   83 (235)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccCh----hhHHHHhcceEEEc
Confidence            345677889999999999999999999999999    999999    898887 44322111    00122346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.+++..+..     +       ++...........   ........+..+|+.... ...+.+|||||+||+    +
T Consensus        84 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~  146 (235)
T cd03261          84 QSGALFDSLTVF-----E-------NVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-DLYPAELSGGMKKRV----A  146 (235)
T ss_pred             cCcccCCCCcHH-----H-------HHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----H
Confidence            998765542220     0       0000000000000   001112234456765543 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |++++||  |+|++...     ..+..+.++.+.+++++ +|+.......+  ++++++|+++..+.+.
T Consensus       147 ia~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~  222 (235)
T cd03261         147 LARALAL-D--PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV-THDLDTAFAIADRIAVLYDGKIVAEGTPE  222 (235)
T ss_pred             HHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhcCEEEEEECCeEEEecCHH
Confidence            9999996 5  8999999  99994332     22333333334567777 89988776533  8899999998877665


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      ++
T Consensus       223 ~~  224 (235)
T cd03261         223 EL  224 (235)
T ss_pred             HH
Confidence            54

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=1.2e-23  Score=197.18  Aligned_cols=210  Identities=16%  Similarity=0.144  Sum_probs=145.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.|.|+.+.+..+                  +|+.+++||+|||+|||||||||.+++++|.    ..|++|  
T Consensus         4 ~L~a~~l~K~y~kr~Vv~~------------------Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl----v~~d~G--   59 (243)
T COG1137           4 TLVAENLAKSYKKRKVVND------------------VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL----VRPDSG--   59 (243)
T ss_pred             EEEehhhhHhhCCeeeeee------------------eeEEEcCCcEEEEECCCCCCceeEEEEEEEE----EecCCc--
Confidence            3456788888777665544                  4677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC-C-ccc--
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-P-LVD--  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l-~-~~~--  307 (537)
                        .|.+++ .++.....  .    ...+..+||++|+++.|..++.            .+++...++....- . ...  
T Consensus        60 --~i~ld~-~diT~lPm--~----~RArlGigYLpQE~SIFr~LtV------------~dNi~~vlE~~~~d~~~~~~~~  118 (243)
T COG1137          60 --KILLDD-EDITKLPM--H----KRARLGIGYLPQEASIFRKLTV------------EDNIMAVLEIREKDLKKAERKE  118 (243)
T ss_pred             --eEEECC-cccccCCh--H----HHhhcCcccccccchHhhcCcH------------HHHHHHHHhhhhcchhHHHHHH
Confidence              998887 55544333  1    2234679999999998876554            11111111111100 0 001  


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~  380 (537)
                      +.+..+.-+++.+.. .+...+||||+|+|+    .+|+++.. +  |.+++||  .+|.+     .+..+...+ +..+
T Consensus       119 ~l~~LL~ef~i~hlr-~~~a~sLSGGERRR~----EIARaLa~-~--P~fiLLDEPFAGVDPiaV~dIq~iI~~L-~~rg  189 (243)
T COG1137         119 ELDALLEEFHITHLR-DSKAYSLSGGERRRV----EIARALAA-N--PKFILLDEPFAGVDPIAVIDIQRIIKHL-KDRG  189 (243)
T ss_pred             HHHHHHHHhchHHHh-cCcccccccchHHHH----HHHHHHhc-C--CCEEEecCCccCCCchhHHHHHHHHHHH-HhCC
Confidence            112333445555554 334788999999999    99999996 5  8999999  77873     333333443 4445


Q ss_pred             EEEEEEeCCC-cchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLS-GRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd-~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..|+++ +|+ ++++.-++ .+++.+|++++.|++.++
T Consensus       190 iGvLIT-DHNVREtL~i~dRaYIi~~G~vla~G~p~ei  226 (243)
T COG1137         190 IGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEI  226 (243)
T ss_pred             ceEEEc-cccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence            678888 565 56666555 899999999999999987

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.85  E-value=1.2e-22  Score=225.76  Aligned_cols=261  Identities=15%  Similarity=0.097  Sum_probs=179.6

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccC-CCCCCCCC
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTS-SVLSDDPA  172 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~-~~~~~~~~  172 (537)
                      .-+.|+..++..+..++.+..++++++++++.+..+.++..+...          ...-+.+++++..|+. ..+     
T Consensus       280 ~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~I~f~~vsf~y~~~~~v-----  344 (567)
T COG1132         280 RLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKD----------TIGSIEFENVSFSYPGKKPV-----  344 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCC----------CCCeEEEEEEEEEcCCCCcc-----
Confidence            345699999999999999999999999999976665555443000          0122566777776664 122     


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                                   -+++++.+++|+++||||++||||||+++.|.|.    ++|+.|    +|.++| .++..++.    
T Consensus       345 -------------l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~----~~~~~G----~I~idg-~dI~~i~~----  398 (567)
T COG1132         345 -------------LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL----YDPTSG----EILIDG-IDIRDISL----  398 (567)
T ss_pred             -------------ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----eEEECC-EehhhcCH----
Confidence                         2345677889999999999999999999999999    999999    999976 77766554    


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchh
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSII  327 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li  327 (537)
                         ..+++.+++|+|++.+|.. ..+++.+.-+ .+.++..+..+.   .+.+.+++..     .-..+|..+       
T Consensus       399 ---~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g-----~dt~vge~G-------  463 (567)
T COG1132         399 ---DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDG-----YDTIVGERG-------  463 (567)
T ss_pred             ---HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccc-----ccceecCCC-------
Confidence               3445889999999998875 3343333322 122211111110   0111111110     011444222       


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCcchhhhhh-hh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                      ..||||||||+    ++||+++. +  |++++||  |++++...  .+.+.+.+  +.. +++++ +|...+...++ ++
T Consensus       464 ~~LSgGQrQrl----aiARall~-~--~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r-T~iiI-aHRlsti~~aD~Ii  534 (567)
T COG1132         464 VNLSGGQRQRL----AIARALLR-N--PPILILDEATSALDTETEALIQDALKKLLKGR-TTLII-AHRLSTIKNADRII  534 (567)
T ss_pred             ccCCHHHHHHH----HHHHHHhc-C--CCEEEEeccccccCHHhHHHHHHHHHHHhcCC-EEEEE-eccHhHHHhCCEEE
Confidence            34999999999    99999996 5  8999999  99994443  33444432  223 56667 89988888777 99


Q ss_pred             hhcCCcEEEEecccchhhh
Q psy16304        401 LMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~~~  419 (537)
                      ++++|+++..|++.+|...
T Consensus       535 Vl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         535 VLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             EEECCEEEEecCHHHHHHc
Confidence            9999999999999998543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.85  E-value=8.9e-23  Score=213.61  Aligned_cols=209  Identities=16%  Similarity=0.162  Sum_probs=144.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++...                  ..++++.+.+|++++|+||||||||||+++|+|.    ..|+.|  
T Consensus         4 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl----~~p~~G--   59 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTA------------------LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL----ERQTAG--   59 (353)
T ss_pred             EEEEEEEEEEeCCeEE------------------EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC----CCCCce--
Confidence            4667788887654221                  2234577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~  309 (537)
                        +|.++| ..+.  +.   ..    .++.++++||++.+++.++.            .+++...+....  .-....+.
T Consensus        60 --~I~i~g-~~~~--~~---~~----~~r~ig~v~Q~~~lfp~~tv------------~eNi~~~~~~~~~~~~~~~~~~  115 (353)
T TIGR03265        60 --TIYQGG-RDIT--RL---PP----QKRDYGIVFQSYALFPNLTV------------ADNIAYGLKNRGMGRAEVAERV  115 (353)
T ss_pred             --EEEECC-EECC--CC---CH----HHCCEEEEeCCcccCCCCcH------------HHHHHHHHHhcCCCHHHHHHHH
Confidence              999987 4332  11   11    13679999999998876554            111111111000  00011123


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. ...+.+|||||+||+    +++++++. +  |++++||  +++++..     ...+..+.++.+.+
T Consensus       116 ~~~l~~l~L~~~~-~~~~~~LSgGq~QRv----aLARaL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t  187 (353)
T TIGR03265       116 AELLDLVGLPGSE-RKYPGQLSGGQQQRV----ALARALAT-S--PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT  187 (353)
T ss_pred             HHHHHHcCCCchh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            3445567877654 445899999999999    99999996 5  8999999  8888322     22333444444566


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++ +||..+....+  +++|++|+++..|++.++.
T Consensus       188 vi~v-THd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       188 TIMV-THDQEEALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             EEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6666 89988776543  9999999999999888764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.2e-22  Score=230.55  Aligned_cols=262  Identities=14%  Similarity=0.072  Sum_probs=174.7

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCC-CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA-PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD  170 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~  170 (537)
                      +..-..|+..+...+.+++....+++++.++++.+.....+. ++-..           ...+.+++++..|+...   .
T Consensus       401 ~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~-----------~~~I~~~nvsf~Y~~~~---~  466 (686)
T TIGR03797       401 FGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKL-----------SGAIEVDRVTFRYRPDG---P  466 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCC-----------CceEEEEEEEEEcCCCC---c
Confidence            355678999999999999999999999999887544322111 11001           12356777777764321   0


Q ss_pred             CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                                   .+-+++++++++|++++|+|+||||||||+++|+|.    +.|++|    +|.++| .++..++.  
T Consensus       467 -------------~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~~~--  522 (686)
T TIGR03797       467 -------------LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF----ETPESG----SVFYDG-QDLAGLDV--  522 (686)
T ss_pred             -------------cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EEcCcCCH--
Confidence                         123456788889999999999999999999999999    999999    999997 77665554  


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI  326 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l  326 (537)
                           ..+++.+++|+|++.++.. ..+++.+.-+.+.++...+.+..   +.+..++...     -..+|..       
T Consensus       523 -----~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~-----dt~ige~-------  585 (686)
T TIGR03797       523 -----QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGM-----HTVISEG-------  585 (686)
T ss_pred             -----HHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccc-----cccccCC-------
Confidence                 3344889999999998765 23332221101111110000000   0011111000     0022322       


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      -..|||||+||+    ++||+++. +  |++++||  |++++..  ..+.+.+.+. +.+++++ +|+......++ +++
T Consensus       586 G~~LSGGQrQRi----alARAll~-~--p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiI-tHr~~~i~~~D~Iiv  656 (686)
T TIGR03797       586 GGTLSGGQRQRL----LIARALVR-K--PRILLFDEATSALDNRTQAIVSESLERL-KVTRIVI-AHRLSTIRNADRIYV  656 (686)
T ss_pred             CCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEE-ecChHHHHcCCEEEE
Confidence            234999999999    99999996 5  8999999  9999443  3333444443 3567777 78888887766 899


Q ss_pred             hcCCcEEEEecccchh
Q psy16304        402 MSCNCQVYLISAKNLS  417 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~  417 (537)
                      +++|+++..|+.+++.
T Consensus       657 l~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       657 LDAGRVVQQGTYDELM  672 (686)
T ss_pred             EECCEEEEECCHHHHH
Confidence            9999999999888774

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.85  E-value=1.5e-22  Score=225.96  Aligned_cols=261  Identities=16%  Similarity=0.118  Sum_probs=169.3

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT  174 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~  174 (537)
                      -..|+..++..++.++....+.+++.++++.+.... +..+.+.       ......-+.+++++..|.+.    .    
T Consensus       300 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~~~-------~~~~~~~i~~~~vsf~~~~~----~----  363 (588)
T PRK11174        300 FYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHP-QQGEKEL-------ASNDPVTIEAEDLEILSPDG----K----  363 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-CCCcccc-------CCCCCceEEEEeeEEeccCC----C----
Confidence            468999999999999999999999999987543211 1110000       00001124555665322110    0    


Q ss_pred             hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                               .+-+++++++++|++++|+|++|||||||+++|+|.    + |++|    +|.++| .++..++.      
T Consensus       364 ---------~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~----~-p~~G----~I~i~g-~~i~~~~~------  418 (588)
T PRK11174        364 ---------TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF----L-PYQG----SLKING-IELRELDP------  418 (588)
T ss_pred             ---------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----C-CCCc----EEEECC-EecccCCH------
Confidence                     112456788889999999999999999999999999    9 9999    999997 66655544      


Q ss_pred             hHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304        255 RTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR  329 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~  329 (537)
                       ..+++.+++|+|++.++.. ..+++.+.- +.+.+++.++.+..   +++..++....     ..+|..+       ..
T Consensus       419 -~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d-----T~vge~G-------~~  485 (588)
T PRK11174        419 -ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD-----TPIGDQA-------AG  485 (588)
T ss_pred             -HHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc-----cccccCC-------CC
Confidence             3344889999999998876 444444321 12222211111100   01111111000     0233322       34


Q ss_pred             hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      |||||+||+    ++||+++. +  |++++||  |++++...  .+.+.+.+. .+.+++++ +|.......++ +++++
T Consensus       486 LSGGQrQRi----alARAll~-~--~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiI-tHrl~~i~~aD~Iivl~  557 (588)
T PRK11174        486 LSVGQAQRL----ALARALLQ-P--CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV-THQLEDLAQWDQIWVMQ  557 (588)
T ss_pred             CCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEE-ecChHHHHhCCEEEEEe
Confidence            999999999    99999996 5  8999999  99994433  333444332 34566666 78887777766 89999


Q ss_pred             CCcEEEEecccchh
Q psy16304        404 CNCQVYLISAKNLS  417 (537)
Q Consensus       404 ~G~ii~~g~nkdl~  417 (537)
                      +|+++..|+.+++.
T Consensus       558 ~G~i~e~G~~~eL~  571 (588)
T PRK11174        558 DGQIVQQGDYAELS  571 (588)
T ss_pred             CCeEeecCCHHHHH
Confidence            99999999888874

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.85  E-value=2e-22  Score=207.06  Aligned_cols=209  Identities=17%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|++...                  ..+++|.+.+|+++||+|+||||||||+++|+|.    ..|++| 
T Consensus         3 ~~i~~~~l~~~~~~~~~------------------l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl----~~p~~G-   59 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVV------------------VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM----ISPDRG-   59 (303)
T ss_pred             cEEEEEeEEEEeCCeEE------------------EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce-
Confidence            35677888887764322                  2345677889999999999999999999999999    899999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~  307 (537)
                         ++.++| .++..     .   ....+..+++++|++.+++..+..     +       ++... ........   ..
T Consensus        60 ---~i~~~g-~~~~~-----~---~~~~~~~i~~v~q~~~~~~~~tv~-----e-------~l~~~-~~~~~~~~~~~~~  114 (303)
T TIGR01288        60 ---KITVLG-EPVPS-----R---ARLARVAIGVVPQFDNLDPEFTVR-----E-------NLLVF-GRYFGMSTREIEA  114 (303)
T ss_pred             ---EEEECC-EECcc-----c---HHHHhhcEEEEeccccCCcCCcHH-----H-------HHHHH-HHHcCCCHHHHHH
Confidence               898887 43311     1   122346799999998765443320     0       00000 00000000   01


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~  380 (537)
                      .....+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++..  ..++   ..+.+ .+
T Consensus       115 ~~~~ll~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g  185 (303)
T TIGR01288       115 VIPSLLEFARLESKA-DVRVALLSGGMKRRL----TLARALIN-D--PQLLILDEPTTGLDPHARHLIWERLRSLLA-RG  185 (303)
T ss_pred             HHHHHHHHCCChhHh-cCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CC
Confidence            112233456766543 445899999999999    99999996 5  8999999  9999332  3333   33333 24


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+++++ +|+.......+  ++++++|+++..+.+.++.
T Consensus       186 ~til~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  223 (303)
T TIGR01288       186 KTILLT-THFMEEAERLCDRLCVLESGRKIAEGRPHALI  223 (303)
T ss_pred             CEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            567777 99998887544  8999999999888877664

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.85  E-value=1.6e-22  Score=211.59  Aligned_cols=208  Identities=15%  Similarity=0.114  Sum_probs=142.7

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++++.+.|++..                  +..++++.+.+|++++|+||||||||||+++|+|.    ..|++|   
T Consensus         3 L~i~~l~~~~~~~~------------------~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G---   57 (353)
T PRK10851          3 IEIANIKKSFGRTQ------------------VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL----EHQTSG---   57 (353)
T ss_pred             EEEEEEEEEeCCeE------------------EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence            45677777765321                  22345677889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc---CcCC---cc
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA---THLP---LV  306 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~---~~l~---~~  306 (537)
                       +|.++| .++..     ...    .++.++++||++.+++.++..            +++...+...   ....   ..
T Consensus        58 -~I~i~g-~~i~~-----~~~----~~r~i~~v~Q~~~l~p~~tv~------------eni~~~~~~~~~~~~~~~~~~~  114 (353)
T PRK10851         58 -HIRFHG-TDVSR-----LHA----RDRKVGFVFQHYALFRHMTVF------------DNIAFGLTVLPRRERPNAAAIK  114 (353)
T ss_pred             -EEEECC-EECCC-----CCH----HHCCEEEEecCcccCCCCcHH------------HHHHhhhhhcccccCCCHHHHH
Confidence             999987 44321     111    125799999998877654431            1111100000   0000   01


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~  379 (537)
                      .+....+..+|+.+.. ...+.+|||||+||+    +++++++. +  |+++++|  |++++.     ....+.++.++.
T Consensus       115 ~~~~~~l~~~~L~~~~-~~~~~~LSgGq~QRv----alArAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~  186 (353)
T PRK10851        115 AKVTQLLEMVQLAHLA-DRYPAQLSGGQKQRV----ALARALAV-E--PQILLLDEPFGALDAQVRKELRRWLRQLHEEL  186 (353)
T ss_pred             HHHHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            1223345567777654 455899999999999    99999996 5  8999999  999832     223334444443


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||..++...+  +++|++|+++..+.+.++.
T Consensus       187 g~tii~v-THd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        187 KFTSVFV-THDQEEAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4566666 89988776544  9999999999998888763

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.85  E-value=1.7e-22  Score=230.17  Aligned_cols=269  Identities=12%  Similarity=-0.008  Sum_probs=175.6

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD  170 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~  170 (537)
                      ..-..|+..+...+.+++....+++++.++++.+.......+  +-..    ....-.....+.+++++..|+...   .
T Consensus       420 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~----~~~~~~~~~~I~~~~vsf~y~~~~---~  492 (710)
T TIGR03796       420 SSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG----SEPSPRLSGYVELRNITFGYSPLE---P  492 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccc----cccCCCCCCeEEEEEEEEecCCCC---C
Confidence            346789999999999999999999999999875433221110  0000    000000012356677777765321   0


Q ss_pred             CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                                   .+-.++++.+++|++++|+|++|||||||+++|+|.    +.|+.|    +|.++| .++..++.  
T Consensus       493 -------------~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~~~--  548 (710)
T TIGR03796       493 -------------PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSG----EILFDG-IPREEIPR--  548 (710)
T ss_pred             -------------CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EeHHHCCH--
Confidence                         123346788889999999999999999999999999    999999    999997 66554443  


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccc
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSS  325 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~  325 (537)
                           ..+++.+++|+|++.++.. ..+++.+.- +.+.++..++.+..   +.+..++...     -..+|..+     
T Consensus       549 -----~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl-----~t~i~e~G-----  613 (710)
T TIGR03796       549 -----EVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGY-----DAELAEGG-----  613 (710)
T ss_pred             -----HHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcc-----cceeccCC-----
Confidence                 2344889999999998865 333332211 11111111111100   0111111000     01233222     


Q ss_pred             hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhhhh-hh
Q psy16304        326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                        ..|||||+||+    ++||+++. +  |++++||  |++++...  .+.+.+.+ .+.+++++ +|+......++ ++
T Consensus       614 --~~LSGGQrQRi----aLARall~-~--p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~Iii-tHrl~~i~~~D~Ii  682 (710)
T TIGR03796       614 --ANLSGGQRQRL----EIARALVR-N--PSILILDEATSALDPETEKIIDDNLRR-RGCTCIIV-AHRLSTIRDCDEII  682 (710)
T ss_pred             --CCCCHHHHHHH----HHHHHHhh-C--CCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEE-ecCHHHHHhCCEEE
Confidence              34999999999    99999996 5  8999999  99994433  34455544 45677777 88888887766 99


Q ss_pred             hhcCCcEEEEecccchhh
Q psy16304        401 LMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~~  418 (537)
                      ++++|+++..|+.+++.+
T Consensus       683 vl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       683 VLERGKVVQRGTHEELWA  700 (710)
T ss_pred             EEeCCEEEEecCHHHHHH
Confidence            999999999999888743

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.84  E-value=5.5e-22  Score=203.74  Aligned_cols=193  Identities=17%  Similarity=0.174  Sum_probs=132.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..++++.+.+|+++||+||||||||||+++|+|.    +.|++|    +|.++| .++..     .   ...++..++++
T Consensus         9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~-----~---~~~~~~~i~~~   71 (302)
T TIGR01188         9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL----LRPTSG----TARVAG-YDVVR-----E---PRKVRRSIGIV   71 (302)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccc-----C---HHHHHhhcEEe
Confidence            3456788889999999999999999999999999    999999    999887 43321     1   12234679999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +|++.+++.++..            +++... .......   ...+....+..+|+.... ...+.+|||||+||+    
T Consensus        72 ~q~~~~~~~~tv~------------e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----  133 (302)
T TIGR01188        72 PQYASVDEDLTGR------------ENLEMM-GRLYGLPKDEAEERAEELLELFELGEAA-DRPVGTYSGGMRRRL----  133 (302)
T ss_pred             cCCCCCCCCCcHH------------HHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHh-CCchhhCCHHHHHHH----
Confidence            9998766543320            001000 0000000   011123345567776543 445899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhh--HHHHHH---HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSED--FRTIWK---QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~---~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                      +++++++. +  |++++||  |+|++.  ...+|+   .+.+. +.+++++ +|++......+  ++++++|+++..+..
T Consensus       134 ~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~-sH~~~~~~~~~d~v~~l~~G~i~~~g~~  208 (302)
T TIGR01188       134 DIAASLIH-Q--PDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT-THYMEEADKLCDRIAIIDHGRIIAEGTP  208 (302)
T ss_pred             HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999997 5  8999999  999933  333343   33333 4567776 89998887544  899999999988887


Q ss_pred             cchhh
Q psy16304        414 KNLSN  418 (537)
Q Consensus       414 kdl~~  418 (537)
                      .++..
T Consensus       209 ~~l~~  213 (302)
T TIGR01188       209 EELKR  213 (302)
T ss_pred             HHHHH
Confidence            77644

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1e-22  Score=212.55  Aligned_cols=196  Identities=17%  Similarity=0.132  Sum_probs=131.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..++|.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++..++.   .. ...+++.++++|
T Consensus        22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl----~~p~~G----~I~~~g-~~i~~~~~---~~-~~~~~~~ig~v~   88 (343)
T PRK11153         22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL----ERPTSG----RVLVDG-QDLTALSE---KE-LRKARRQIGMIF   88 (343)
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce----EEEECC-EECCcCCH---HH-HHHHhcCEEEEe
Confidence            445678889999999999999999999999999    999999    999887 44322111   11 112346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+.            .+++...+.. ....   ...+....+..+|+.... ...+.+|||||+||+    +
T Consensus        89 q~~~l~~~~tv------------~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv----~  150 (343)
T PRK11153         89 QHFNLLSSRTV------------FDNVALPLEL-AGTPKAEIKARVTELLELVGLSDKA-DRYPAQLSGGQKQRV----A  150 (343)
T ss_pred             CCCccCCCCcH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHH----H
Confidence            99876654332            0011000000 0010   001122334466776543 455899999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |++++||  |+|++..  ..+   +..+.++.+.+++++ +|++......+  ++++++|+++..+...
T Consensus       151 lAraL~~-~--p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv-tH~~~~i~~~~d~v~~l~~G~i~~~g~~~  226 (343)
T PRK11153        151 IARALAS-N--PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI-THEMDVVKRICDRVAVIDAGRLVEQGTVS  226 (343)
T ss_pred             HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            9999997 5  8999999  9999433  222   334433334567777 89988876533  8999999999888877


Q ss_pred             chh
Q psy16304        415 NLS  417 (537)
Q Consensus       415 dl~  417 (537)
                      ++.
T Consensus       227 ~~~  229 (343)
T PRK11153        227 EVF  229 (343)
T ss_pred             HHH
Confidence            663

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.84  E-value=2.5e-22  Score=211.57  Aligned_cols=208  Identities=14%  Similarity=0.129  Sum_probs=144.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++..+                  ..++++.+.+|++++|+||||||||||+++|+|.    ..|+.|  
T Consensus        14 ~L~l~~l~~~~~~~~~------------------l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl----~~p~~G--   69 (375)
T PRK09452         14 LVELRGISKSFDGKEV------------------ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF----ETPDSG--   69 (375)
T ss_pred             eEEEEEEEEEECCeEE------------------EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence            4677888887764222                  2234577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| ..+.     ....    .++.++++||++.+++.++.            .+++...+.. .....   ..+
T Consensus        70 --~I~~~g-~~i~-----~~~~----~~r~ig~vfQ~~~lfp~ltv------------~eNi~~~l~~-~~~~~~~~~~~  124 (375)
T PRK09452         70 --RIMLDG-QDIT-----HVPA----ENRHVNTVFQSYALFPHMTV------------FENVAFGLRM-QKTPAAEITPR  124 (375)
T ss_pred             --EEEECC-EECC-----CCCH----HHCCEEEEecCcccCCCCCH------------HHHHHHHHhh-cCCCHHHHHHH
Confidence              999987 4332     1111    23679999999988876554            1111111110 00100   112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    +++++++. +  |++++||  +++++..     ...++.+.++.+.
T Consensus       125 ~~~~l~~~~l~~~~-~~~p~~LSgGq~QRV----aLARaL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~  196 (375)
T PRK09452        125 VMEALRMVQLEEFA-QRKPHQLSGGQQQRV----AIARAVVN-K--PKVLLLDESLSALDYKLRKQMQNELKALQRKLGI  196 (375)
T ss_pred             HHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence            23445567877654 555899999999999    99999996 4  8999999  8888322     2233444444455


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..+....+  +++|++|++...+++.++.
T Consensus       197 tiI~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        197 TFVFV-THDQEEALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            66666 88888765433  9999999999999887763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.84  E-value=3e-22  Score=209.77  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=138.4

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..+++|.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++| .++..++.   ...+...++.++++
T Consensus         9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl----~~p~~G----~I~i~G-~~i~~~~~---~~~~~~rr~~i~~v   76 (363)
T TIGR01186         9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL----IEPTAG----QIFIDG-ENIMKQSP---VELREVRRKKIGMV   76 (363)
T ss_pred             EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC----CCCCce----EEEECC-EECCcCCH---HHHHHHHhCcEEEE
Confidence            3556788899999999999999999999999999    999999    999987 54433222   22222335689999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      ||.+.+++.++..            +++...... ..+.   ...+....+..+|+.... ...+.+|||||+||+    
T Consensus        77 ~Q~~~l~~~~TV~------------eNi~~~~~~-~~~~~~~~~~~~~~~l~~vgL~~~~-~~~p~~LSGGq~QRV----  138 (363)
T TIGR01186        77 FQQFALFPHMTIL------------QNTSLGPEL-LGWPEQERKEKALELLKLVGLEEYE-HRYPDELSGGMQQRV----  138 (363)
T ss_pred             ECCCcCCCCCCHH------------HHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCchhh-hCChhhCCHHHHHHH----
Confidence            9999988765441            111100000 0111   111233445577886554 556999999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                      +++++++. +  |+++++|  +++++...  .+.   ..+.+..+.+++++ +||..+....+  +++|++|+++..|++
T Consensus       139 ~lARAL~~-~--p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~v-THd~~ea~~~~drI~vl~~G~iv~~g~~  214 (363)
T TIGR01186       139 GLARALAA-E--PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI-THDLDEAIRIGDRIVIMKAGEIVQVGTP  214 (363)
T ss_pred             HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEeeCCH
Confidence            99999996 5  8999999  88984332  222   23333334566666 89988765533  999999999999988


Q ss_pred             cchhh
Q psy16304        414 KNLSN  418 (537)
Q Consensus       414 kdl~~  418 (537)
                      +++..
T Consensus       215 ~ei~~  219 (363)
T TIGR01186       215 DEILR  219 (363)
T ss_pred             HHHHh
Confidence            87643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.84  E-value=3.4e-22  Score=209.70  Aligned_cols=191  Identities=16%  Similarity=0.165  Sum_probs=134.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce--eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV--GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~--G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .++++.+.+|++++|+|||||||||||++|+|.    ..|++  |    ++.++| ..+.     ....    .++.+++
T Consensus        22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~~~G----~i~~~g-~~~~-----~~~~----~~r~ig~   83 (362)
T TIGR03258        22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF----VKAAGLTG----RIAIAD-RDLT-----HAPP----HKRGLAL   83 (362)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCCE----EEEECC-EECC-----CCCH----HHCCEEE
Confidence            345677889999999999999999999999999    99999  9    999887 4331     1111    2367999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +||++.+++.++.            .+++...+.. ....   ...+....+..+|+.+.. .+.+.+|||||+||+   
T Consensus        84 vfQ~~~l~p~~tv------------~enl~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSgGq~QRv---  146 (362)
T TIGR03258        84 LFQNYALFPHLKV------------EDNVAFGLRA-QKMPKADIAERVADALKLVGLGDAA-AHLPAQLSGGMQQRI---  146 (362)
T ss_pred             EECCcccCCCCcH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCchh-hCChhhCCHHHHHHH---
Confidence            9999988776554            1111111110 0011   111233445677887664 556999999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcC-CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTV-SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI  411 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~-~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g  411 (537)
                       +++++++. +  |++++||  +++++..  ..++   +.+.++. +.+++++ +||..+....+  +++|++|+++..+
T Consensus       147 -aLARAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~v-THd~~ea~~l~dri~vl~~G~i~~~g  221 (362)
T TIGR03258       147 -AIARAIAI-E--PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV-THDQDDALTLADKAGIMKDGRLAAHG  221 (362)
T ss_pred             -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEc
Confidence             99999996 5  8999999  8998322  2222   3444443 4566666 89988776533  9999999999999


Q ss_pred             cccchh
Q psy16304        412 SAKNLS  417 (537)
Q Consensus       412 ~nkdl~  417 (537)
                      ++.++.
T Consensus       222 ~~~~~~  227 (362)
T TIGR03258       222 EPQALY  227 (362)
T ss_pred             CHHHHH
Confidence            988774

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.84  E-value=2.2e-22  Score=244.13  Aligned_cols=299  Identities=17%  Similarity=0.085  Sum_probs=183.2

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| .++..       . ....++.+|++
T Consensus       946 L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL----l~PtsG----~I~i~G-~dI~~-------~-~~~~r~~IG~~ 1008 (2272)
T TIGR01257       946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGL----LPPTSG----TVLVGG-KDIET-------N-LDAVRQSLGMC 1008 (2272)
T ss_pred             EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC----CCCCce----EEEECC-EECcc-------h-HHHHhhcEEEE
Confidence            4556788889999999999999999999999999    999999    898887 44421       1 12234679999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +|+..+++.++..            +++... ..+.+..   ...+....+..+|+.+.. ...+.+|||||+||+    
T Consensus      1009 pQ~~~L~~~LTV~------------E~L~f~-~~lkg~~~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqKQRL---- 1070 (2272)
T TIGR01257      1009 PQHNILFHHLTVA------------EHILFY-AQLKGRSWEEAQLEMEAMLEDTGLHHKR-NEEAQDLSGGMQRKL---- 1070 (2272)
T ss_pred             ecCCcCCCCCCHH------------HHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----
Confidence            9998766544331            111100 0001110   011223345567877654 455899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      ++|++++. +  |++++||  |+|+  ...+.+|+.+.+. .+.+|+++ +|++++.+..+  +++|++|+++..|++..
T Consensus      1071 sLArALi~-~--PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIlt-THdmdea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257      1071 SVAIAFVG-D--AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS-THHMDEADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred             HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999996 5  8999999  9999  3445555443332 23466666 89988887544  89999999999999888


Q ss_pred             hhhhhccchhhhhhhhhh-HHhhcccc-ccccCCCCCccc---------c------ccchhhhh---c---cccCc-CCC
Q psy16304        416 LSNGFKKSERDETNISNF-QIKNSSEN-LQDNNTSDNHDS---------K------KKQPRKRK---K---KVAPL-NTD  471 (537)
Q Consensus       416 l~~~~~~~~~~~~~le~~-~~~~~~~~-l~~~~~~~~~~~---------~------~~~~~~r~---k---~~~~l-~~~  471 (537)
                      +++++............. ....+..+ ...........+         .      ........   +   ..+.. ..+
T Consensus      1147 Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g 1226 (2272)
T TIGR01257      1147 LKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIG 1226 (2272)
T ss_pred             HHHhcCCcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccC
Confidence            877665432111100000 00000000 000000000000         0      00000000   0   00011 124


Q ss_pred             CCceeecCcccc-CC-CceEEEeecccccccccCCCcCC-chHHHHHHHHhhhhh
Q psy16304        472 DETELSLPPLRL-LG-RNVTHTDSNQEQRCLNLSSDPLG-TGAFNVLHAIATDAA  523 (537)
Q Consensus       472 ~~~~l~fp~~~~-~g-~~v~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  523 (537)
                      .+..+.+|.... .+ -..+.-+|++.+..|||.+--++ +||||||++++.+.+
T Consensus      1227 ~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257      1227 QELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred             CEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhcc
Confidence            455566665432 12 25677889999999999999999 999999999997754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.84  E-value=3.4e-22  Score=227.69  Aligned_cols=270  Identities=11%  Similarity=0.088  Sum_probs=176.1

Q ss_pred             eccch-hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCC
Q psy16304         88 LYNMY-KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSV  166 (537)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~  166 (537)
                      .|.+| ...+.|+..+...++.++....+++++.++++.+....++..+...   .   .  ....+.+++++..|++..
T Consensus       416 a~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~---~---~--~~~~I~~~~vsf~y~~~~  487 (708)
T TIGR01193       416 TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTEL---N---N--LNGDIVINDVSYSYGYGS  487 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC---C---C--CCCcEEEEEEEEEcCCCC
Confidence            34444 3456899999999999999999999999998754432211110000   0   0  012356677777765211


Q ss_pred             CCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe
Q psy16304        167 LSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY  246 (537)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~  246 (537)
                                       .+-.++++.+++|++++|+|+||||||||+++|+|.    +.|+.|    +|.++| .++..+
T Consensus       488 -----------------~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~  541 (708)
T TIGR01193       488 -----------------NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF----FQARSG----EILLNG-FSLKDI  541 (708)
T ss_pred             -----------------cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCc----EEEECC-EEHHHc
Confidence                             012356688889999999999999999999999999    999999    999997 666544


Q ss_pred             ecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccc---cccCcCCccccCCccEEEeccCc
Q psy16304        247 DLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDN  320 (537)
Q Consensus       247 D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~  320 (537)
                      +.       ..+++.+++|+|++.++.. ..+++.+..  +.+.++..++.+..   +.+..++....     ..+|.. 
T Consensus       542 ~~-------~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gld-----t~i~e~-  608 (708)
T TIGR01193       542 DR-------HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQ-----TELSEE-  608 (708)
T ss_pred             CH-------HHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccC-----cEecCC-
Confidence            43       3344889999999998765 334333321  11111111110000   01111110000     022222 


Q ss_pred             cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhh
Q psy16304        321 AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDR  396 (537)
Q Consensus       321 ~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~  396 (537)
                            -..|||||+||+    ++||+++. +  |++++||  |++++...  .+.+.+.+..+.+++++ +|+......
T Consensus       609 ------G~~LSgGQrQRi----alARall~-~--p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~Iii-tHr~~~~~~  674 (708)
T TIGR01193       609 ------GSSISGGQKQRI----ALARALLT-D--SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV-AHRLSVAKQ  674 (708)
T ss_pred             ------CCCCCHHHHHHH----HHHHHHhh-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEE-ecchHHHHc
Confidence                  234999999999    99999996 5  8999999  99994433  33344433223567777 888888777


Q ss_pred             hh-hhhhcCCcEEEEecccchhh
Q psy16304        397 CQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       397 ~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ++ ++++++|+++..|+..++.+
T Consensus       675 ~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       675 SDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             CCEEEEEECCEEEEECCHHHHHh
Confidence            66 99999999999998887743

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=3.2e-22  Score=197.73  Aligned_cols=213  Identities=16%  Similarity=0.121  Sum_probs=134.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+....    .          ..+-..+++.+.+|++++|+|+||||||||+++|+|.    ..|++| 
T Consensus         4 ~~l~~~~l~~~~~~~~~----~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G-   64 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSV----Q----------TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL----DTPTSG-   64 (233)
T ss_pred             ceEEEEeEEEEcCCCCc----c----------eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce-
Confidence            35667788887653210    0          0122345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~  307 (537)
                         +|.++| .++..++.   .......+..+++++|++.+++..+..            +++...+. +....   ...
T Consensus        65 ---~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~  124 (233)
T PRK11629         65 ---DVIFNG-QPMSKLSS---AAKAELRNQKLGFIYQFHHLLPDFTAL------------ENVAMPLL-IGKKKPAEINS  124 (233)
T ss_pred             ---EEEECC-EEcCcCCH---HHHHHHHhccEEEEecCcccCCCCCHH------------HHHHHHHH-hcCCCHHHHHH
Confidence               999887 44432211   111111224689999997755432220            00000000 00000   011


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~  380 (537)
                      +....+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++..  ..++   ..+.+..+
T Consensus       125 ~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrl----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g  196 (233)
T PRK11629        125 RALEMLAAVGLEHRA-NHRPSELSGGERQRV----AIARALVN-N--PRLVLADEPTGNLDARNADSIFQLLGELNRLQG  196 (233)
T ss_pred             HHHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            122334466776543 445889999999999    99999997 5  8999999  9999333  2222   33333234


Q ss_pred             EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304        381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g  411 (537)
                      .+++++ +|+.+....++ ++++++|+++..+
T Consensus       197 ~tvii~-sH~~~~~~~~~~~~~l~~G~i~~~~  227 (233)
T PRK11629        197 TAFLVV-THDLQLAKRMSRQLEMRDGRLTAEL  227 (233)
T ss_pred             CEEEEE-eCCHHHHHhhCEEEEEECCEEEEEe
Confidence            566666 88888776655 7888999987654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.84  E-value=4.9e-22  Score=197.40  Aligned_cols=203  Identities=11%  Similarity=0.059  Sum_probs=126.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++..++.   ... ..++..+++++|
T Consensus        20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~~-~~~~~~i~~v~q   86 (243)
T TIGR02315        20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRL----VEPSSG----SILLEG-TDITKLRG---KKL-RKLRRRIGMIFQ   86 (243)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCcc----EEEECC-EEhhhCCH---HHH-HHHHhheEEEcC
Confidence            45677889999999999999999999999999    899999    899887 44322111   111 123467999999


Q ss_pred             CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.+++..+.  .+.+........   ....+..... ....+....+..+|+.... ...+.+|||||+||+    +++
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la  157 (243)
T TIGR02315        87 HYNLIERLTVLENVLHGRLGYKPT---WRSLLGRFSE-EDKERALSALERVGLADKA-YQRADQLSGGQQQRV----AIA  157 (243)
T ss_pred             CCcccccccHHHHHhhcccccccc---hhhhhccccH-HHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----HHH
Confidence            9876543222  110000000000   0000000000 0001122234456665433 445789999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++...     ..+..+.++.+.+++++ +|+....... + ++++++|+++..+.+.++
T Consensus       158 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       158 RALAQ-Q--PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN-LHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             HHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            99996 5  8999999  99994332     23334433334566666 8888877543 3 889999999877765554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=4.5e-22  Score=209.83  Aligned_cols=209  Identities=14%  Similarity=0.163  Sum_probs=145.2

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|++...                  ..++++.+.+|++++|+||||||||||+++|+|.    ..|+.| 
T Consensus        18 ~~l~l~~v~~~~~~~~~------------------l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G-   74 (377)
T PRK11607         18 PLLEIRNLTKSFDGQHA------------------VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF----EQPTAG-   74 (377)
T ss_pred             ceEEEEeEEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce-
Confidence            35677888887653211                  2335577889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~  307 (537)
                         +|.++| ..+.     ....    .++.++++||++.+++.++.            .+++...+.. ....   ...
T Consensus        75 ---~I~i~g-~~i~-----~~~~----~~r~ig~vfQ~~~lfp~ltv------------~eNi~~~l~~-~~~~~~~~~~  128 (377)
T PRK11607         75 ---QIMLDG-VDLS-----HVPP----YQRPINMMFQSYALFPHMTV------------EQNIAFGLKQ-DKLPKAEIAS  128 (377)
T ss_pred             ---EEEECC-EECC-----CCCH----HHCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHHH
Confidence               999987 4332     1112    23679999999998876554            1111111100 0000   011


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~  380 (537)
                      +....+..+|+.+.. ...+.+|||||+||+    +++++++. +  |++++||  +++++...     ..+..+.++.+
T Consensus       129 ~v~~~l~~l~L~~~~-~~~~~~LSgGq~QRV----aLARAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  200 (377)
T PRK11607        129 RVNEMLGLVHMQEFA-KRKPHQLSGGQRQRV----ALARSLAK-R--PKLLLLDEPMGALDKKLRDRMQLEVVDILERVG  200 (377)
T ss_pred             HHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            223345567776654 455899999999999    99999996 5  8999999  89983322     22234445445


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+++++ +||..+....+  +++|++|++...+++.++.
T Consensus       201 ~tii~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        201 VTCVMV-THDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             CEEEEE-cCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence            666666 89988765543  8999999999999988764

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.84  E-value=4.4e-22  Score=195.00  Aligned_cols=190  Identities=17%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+..     ..   ..++..+++++|
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~-----~~---~~~~~~i~~~~q   80 (220)
T cd03265          18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL----LKPTSG----RATVAG-HDVVR-----EP---REVRRRIGIVFQ   80 (220)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EecCc-----Ch---HHHhhcEEEecC
Confidence            45677889999999999999999999999999    999999    888887 43321     11   122367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.+++..+.     .+       ++......  ........+....+..+|+.... ...+.+|||||+||+    +++
T Consensus        81 ~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~----~la  143 (220)
T cd03265          81 DLSVDDELTG-----WE-------NLYIHARLYGVPGAERRERIDELLDFVGLLEAA-DRLVKTYSGGMRRRL----EIA  143 (220)
T ss_pred             CccccccCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHH----HHH
Confidence            9775543222     00       00000000  00000011122334466776543 455899999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      ++++. +  |+++++|  |+|++..  ..+   +..+.++.+.+++++ +|+.......+  ++++++|+++..+..++
T Consensus       144 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         144 RSLVH-R--PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            99996 5  8999999  9999333  222   233333334566666 89988776543  88999999987665443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4e-22  Score=210.03  Aligned_cols=208  Identities=16%  Similarity=0.109  Sum_probs=140.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.+.|++...                  ..++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~i~~l~~~~~~~~v------------------l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl----~~p~~G--   58 (369)
T PRK11000          3 SVTLRNVTKAYGDVVI------------------SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----EDITSG--   58 (369)
T ss_pred             EEEEEEEEEEeCCeEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence            3567778777654222                  2345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| ..+..     ...    .++.++++||++.+++.++..            +++...+.. ....   ...+
T Consensus        59 --~I~~~g-~~i~~-----~~~----~~~~i~~v~Q~~~l~~~~tv~------------eni~~~~~~-~~~~~~~~~~~  113 (369)
T PRK11000         59 --DLFIGE-KRMND-----VPP----AERGVGMVFQSYALYPHLSVA------------ENMSFGLKL-AGAKKEEINQR  113 (369)
T ss_pred             --EEEECC-EECCC-----CCH----hHCCEEEEeCCcccCCCCCHH------------HHHHhHHhh-cCCCHHHHHHH
Confidence              999887 43321     111    125699999998877654431            111100000 0000   0112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    +++++++. +  |++++||  |++++..     ...++++.++.+.
T Consensus       114 ~~~~l~~lgL~~~~-~~~~~~LSgGq~QRv----aLAraL~~-~--P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~  185 (369)
T PRK11000        114 VNQVAEVLQLAHLL-DRKPKALSGGQRQRV----AIGRTLVA-E--PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR  185 (369)
T ss_pred             HHHHHHHcCChhhh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            23344567776543 455899999999999    99999996 5  8999999  9999333     2233444444345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..+....+  +++|++|+++..+.+.++.
T Consensus       186 tvI~v-THd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~  222 (369)
T PRK11000        186 TMIYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELY  222 (369)
T ss_pred             EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            66666 89988776543  8999999999988877763

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.84  E-value=4e-22  Score=211.35  Aligned_cols=213  Identities=13%  Similarity=0.086  Sum_probs=142.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +..+++|.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus         3 ~L~~~nls~~y~~~~------------------vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl----l~p~sG--   58 (402)
T PRK09536          3 MIDVSDLSVEFGDTT------------------VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT----LTPTAG--   58 (402)
T ss_pred             eEEEeeEEEEECCEE------------------EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC----CCCCCc--
Confidence            456777877765332                  23345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~  309 (537)
                        +|.++| ..+.-++       .....+.+++++|++.++..++..-.+.+    .+    ......+..+.  .....
T Consensus        59 --~I~l~G-~~i~~~~-------~~~~~~~ig~v~q~~~l~~~~tv~e~v~~----~~----~~~~~~~~~~~~~~~~~v  120 (402)
T PRK09536         59 --TVLVAG-DDVEALS-------ARAASRRVASVPQDTSLSFEFDVRQVVEM----GR----TPHRSRFDTWTETDRAAV  120 (402)
T ss_pred             --EEEECC-EEcCcCC-------HHHHhcceEEEccCCCCCCCCCHHHHHHh----cc----chhcccccCCCHHHHHHH
Confidence              999987 4332111       11223679999999875544332100000    00    00000011000  11122


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. .+.+.+|||||+||+    ++++++++ +  |++++||  |+|++.     +..+++.+.+. +.+
T Consensus       121 ~~~le~vgl~~~~-~~~~~~LSgGerQRv----~IArAL~~-~--P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~T  191 (402)
T PRK09536        121 ERAMERTGVAQFA-DRPVTSLSGGERQRV----LLARALAQ-A--TPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKT  191 (402)
T ss_pred             HHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCE
Confidence            3445567776554 445899999999999    99999997 5  8999999  999933     33344555443 456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++ +|+.......+  ++++++|+++..|.++++
T Consensus       192 IIiv-sHdl~~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        192 AVAA-IHDLDLAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             EEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            6776 89998886544  899999999999888764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.83  E-value=3.5e-22  Score=201.88  Aligned_cols=213  Identities=16%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +-.++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         7 ~l~~~~l~~~~~~~~------------------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G--   62 (269)
T PRK11831          7 LVDMRGVSFTRGNRC------------------IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ----IAPDHG--   62 (269)
T ss_pred             eEEEeCeEEEECCEE------------------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            466778877664321                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| ..+..++.   ... ...+..+++++|++.+++..+..     +       ++...+.....+..   ...
T Consensus        63 --~i~~~g-~~i~~~~~---~~~-~~~~~~i~~v~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~  123 (269)
T PRK11831         63 --EILFDG-ENIPAMSR---SRL-YTVRKRMSMLFQSGALFTDMNVF-----D-------NVAYPLREHTQLPAPLLHST  123 (269)
T ss_pred             --eEEECC-EEccccCh---hhH-HHHhhcEEEEecccccCCCCCHH-----H-------HHHHHHHHccCCCHHHHHHH
Confidence              898887 44322211   111 11235689999997765432220     0       00000000000000   011


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    +++++++. +  |++++||  |+|++..  .   .++..+.+..+.
T Consensus       124 ~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~  195 (269)
T PRK11831        124 VMMKLEAVGLRGAA-KLMPSELSGGMARRA----ALARAIAL-E--PDLIMFDEPFVGQDPITMGVLVKLISELNSALGV  195 (269)
T ss_pred             HHHHHHHcCChhhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence            12234456776543 444899999999999    99999996 5  8999999  9999332  2   233344333345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +|+.......+  ++++++|+++..+.++++
T Consensus       196 tiiiv-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        196 TCVVV-SHDVPEVLSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             EEEEE-ecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence            66777 89988776543  888999999888776665

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=8.1e-22  Score=189.51  Aligned_cols=213  Identities=15%  Similarity=0.100  Sum_probs=142.3

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      +..++++.-.||......+                  +++.+.+|++++|+|+||||||||++.|+|.    ..+.+|  
T Consensus         3 mL~v~~l~~~YG~~~~L~g------------------vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl----~~~~~G--   58 (237)
T COG0410           3 MLEVENLSAGYGKIQALRG------------------VSLEVERGEIVALLGRNGAGKTTLLKTIMGL----VRPRSG--   58 (237)
T ss_pred             ceeEEeEeecccceeEEee------------------eeeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe--
Confidence            5677888888877655544                  4577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcccc-CC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF-RS  310 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~-~~  310 (537)
                        +|.++| .++.-+..      ....+..+++|||.-..|+.++..            +++.-.......-..... .+
T Consensus        59 --~I~~~G-~dit~~p~------~~r~r~Gi~~VPegR~iF~~LTVe------------ENL~~g~~~~~~~~~~~~~~e  117 (237)
T COG0410          59 --RIIFDG-EDITGLPP------HERARLGIAYVPEGRRIFPRLTVE------------ENLLLGAYARRDKEAQERDLE  117 (237)
T ss_pred             --eEEECC-eecCCCCH------HHHHhCCeEeCcccccchhhCcHH------------HHHhhhhhcccccccccccHH
Confidence              999887 55433222      234558899999999988876651            111100000000000000 00


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vI  383 (537)
                      ....++-.-.........+|||||+|.+    +++++++. +  |++++||  |.|+     +.+...++.+.++...+|
T Consensus       118 ~v~~lFP~Lker~~~~aG~LSGGEQQML----AiaRALm~-~--PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI  190 (237)
T COG0410         118 EVYELFPRLKERRNQRAGTLSGGEQQML----AIARALMS-R--PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI  190 (237)
T ss_pred             HHHHHChhHHHHhcCcccCCChHHHHHH----HHHHHHhc-C--CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence            1111111001112344678999999999    99999996 4  8999999  8888     445555566665555577


Q ss_pred             EEEeCCCcchhh-hhh-hhhhcCCcEEEEecccchh
Q psy16304        384 LVSHSLSGRPDD-RCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       384 lVvdshd~~~~~-~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++ -.+...+. -.+ .++|+.|+++..|..+++.
T Consensus       191 lLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~  225 (237)
T COG0410         191 LLV-EQNARFALEIADRGYVLENGRIVLSGTAAELL  225 (237)
T ss_pred             EEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence            777 34433333 333 8999999999999988874

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.83  E-value=4e-22  Score=196.88  Aligned_cols=195  Identities=17%  Similarity=0.168  Sum_probs=127.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++| .++..++.   ... ...+..+++++
T Consensus        22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~-~~~~~~i~~~~   88 (233)
T cd03258          22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL----ERPTSG----SVLVDG-TDLTLLSG---KEL-RKARRRIGMIF   88 (233)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcccCCH---HHH-HHHHhheEEEc
Confidence            345677889999999999999999999999999    999999    999887 44422111   111 11236789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.+++..+..            +++...... ....   ........+..+|+.... ...+.+|||||+||+    +
T Consensus        89 q~~~~~~~~t~~------------e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~  150 (233)
T cd03258          89 QHFNLLSSRTVF------------ENVALPLEI-AGVPKAEIEERVLELLELVGLEDKA-DAYPAQLSGGQKQRV----G  150 (233)
T ss_pred             cCcccCCCCcHH------------HHHHHHHHH-cCCCHHHHHHHHHHHHHHCCChhhh-hcChhhCCHHHHHHH----H
Confidence            998765432220            000000000 0000   001122334456766543 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |++++||  |+|++...  .   .+..+.++.+.+++++ +|+.+..... + ++++++|+++..+..+
T Consensus       151 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  226 (233)
T cd03258         151 IARALAN-N--PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI-THEMEVVKRICDRVAVMEKGEVVEEGTVE  226 (233)
T ss_pred             HHHHHhc-C--CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            9999996 5  8999999  99994332  2   2233333334566666 8888876543 3 8899999998877655


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      ++
T Consensus       227 ~~  228 (233)
T cd03258         227 EV  228 (233)
T ss_pred             HH
Confidence            54

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=3.8e-22  Score=211.42  Aligned_cols=199  Identities=15%  Similarity=0.156  Sum_probs=135.0

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      ...+++|.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| .++..++.   ...+..++..+++
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl----~~p~sG----~I~i~G-~~i~~~~~---~~l~~~~~~~igy  110 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL----IEPTRG----QVLIDG-VDIAKISD---AELREVRRKKIAM  110 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCC----EEEECC-EECCcCCH---HHHHHHHhCCEEE
Confidence            45678889999999999999999999999999999    999999    999887 44322211   1222233457999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++|++.+++..+.            .+++...+. ...+..   ..+....+..+|+.... ...+.+|||||+||+   
T Consensus       111 v~Q~~~l~~~~Tv------------~enl~~~~~-~~~~~~~~~~~~~~e~L~~~gL~~~~-~~~~~~LSgGq~QRv---  173 (400)
T PRK10070        111 VFQSFALMPHMTV------------LDNTAFGME-LAGINAEERREKALDALRQVGLENYA-HSYPDELSGGMRQRV---  173 (400)
T ss_pred             EECCCcCCCCCCH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCChhh-hcCcccCCHHHHHHH---
Confidence            9999887665333            011110000 000100   11222344567776553 555899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |++++..  ..++   ..+.++.+.+++++ +|+..+....+  ++++++|+++..+.
T Consensus       174 -~LArAL~~-~--P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIiv-THd~~~~~~~~Dri~vL~~G~i~~~g~  248 (400)
T PRK10070        174 -GLARALAI-N--PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI-SHDLDEAMRIGDRIAIMQNGEVVQVGT  248 (400)
T ss_pred             -HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEE-ECCHHHHHHhCCEEEEEECCEEEecCC
Confidence             99999997 5  8999999  9999332  2233   33333334566666 89988776543  89999999988887


Q ss_pred             ccchh
Q psy16304        413 AKNLS  417 (537)
Q Consensus       413 nkdl~  417 (537)
                      ++++.
T Consensus       249 ~~~l~  253 (400)
T PRK10070        249 PDEIL  253 (400)
T ss_pred             HHHHH
Confidence            77663

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.83  E-value=4.8e-22  Score=204.06  Aligned_cols=190  Identities=18%  Similarity=0.153  Sum_probs=132.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|+++||+||||||||||+++|+|.    ..|+.|    +|.++| .++..     .   ....+..+++++
T Consensus        19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl----~~~~~G----~i~i~g-~~~~~-----~---~~~~~~~ig~~~   81 (301)
T TIGR03522        19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY----LPPDSG----SVQVCG-EDVLQ-----N---PKEVQRNIGYLP   81 (301)
T ss_pred             EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccc-----C---hHHHHhceEEec
Confidence            345677889999999999999999999999999    999999    899887 43321     1   112336799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      |++.+++.++.                .+.+..   ..+..   ...+....+..+|+.... .+.+..||+||+||+  
T Consensus        82 q~~~l~~~~tv----------------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv--  142 (301)
T TIGR03522        82 EHNPLYLDMYV----------------REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-HKKIGQLSKGYRQRV--  142 (301)
T ss_pred             CCCCCCCCCcH----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCchhhCCHHHHHHH--
Confidence            99886655432                111110   00010   011223344567777654 455899999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                        +++++++. +  |++++||  |+|++.  ...+|+.+.+- .+.+++++ +|++.+.+..+  ++++++|+++..|+.
T Consensus       143 --~la~al~~-~--p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~-sH~l~~~~~~~d~i~~l~~G~i~~~g~~  216 (301)
T TIGR03522       143 --GLAQALIH-D--PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS-THIMQEVEAICDRVIIINKGKIVADKKL  216 (301)
T ss_pred             --HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence              99999996 5  8999999  999933  33344333221 13566666 99999877644  899999999988887


Q ss_pred             cchhh
Q psy16304        414 KNLSN  418 (537)
Q Consensus       414 kdl~~  418 (537)
                      .++..
T Consensus       217 ~~~~~  221 (301)
T TIGR03522       217 DELSA  221 (301)
T ss_pred             HHHHH
Confidence            77643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.83  E-value=5.3e-22  Score=225.91  Aligned_cols=264  Identities=14%  Similarity=0.095  Sum_probs=174.6

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD  170 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~  170 (537)
                      .....|+..+...+.+++....+.+++.++++.+...+++..  |.+.           ...+.+++++..|++..    
T Consensus       428 ~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~-----------~~~I~~~nVsf~Y~~~~----  492 (711)
T TIGR00958       428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL-----------EGLIEFQDVSFSYPNRP----  492 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-----------CCeEEEEEEEEECCCCC----
Confidence            456789999999999999999999999999875543221111  1011           22466778877765321    


Q ss_pred             CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                       .          ..+-+++++.+++|++++|+|+||+|||||+++|.|.    ++|++|    +|.++| .++..++.  
T Consensus       493 -~----------~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~idg-~~i~~~~~--  550 (711)
T TIGR00958       493 -D----------VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL----YQPTGG----QVLLDG-VPLVQYDH--  550 (711)
T ss_pred             -C----------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----EEEECC-EEHHhcCH--
Confidence             0          0123456788899999999999999999999999999    999999    999997 65544433  


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccc
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSS  325 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~  325 (537)
                           ..+++.+++|+|++.++.. ..+++.+..+ .+.++...+.+..   +.+..++....     ..+|..      
T Consensus       551 -----~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gld-----T~ige~------  614 (711)
T TIGR00958       551 -----HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD-----TEVGEK------  614 (711)
T ss_pred             -----HHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccC-----CcccCC------
Confidence                 2334789999999998865 3343333211 1111111110000   01111110000     022221      


Q ss_pred             hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                       -..|||||+||+    ++||+++. +  |++++||  |++++...+ ...+.....+.+++++ +|+......++ +++
T Consensus       615 -G~~LSGGQkQRl----alARALl~-~--p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiI-tHrl~~i~~aD~Iiv  685 (711)
T TIGR00958       615 -GSQLSGGQKQRI----AIARALVR-K--PRVLILDEATSALDAECEQLLQESRSRASRTVLLI-AHRLSTVERADQILV  685 (711)
T ss_pred             -CCcCCHHHHHHH----HHHHHHhc-C--CCEEEEEccccccCHHHHHHHHHhhccCCCeEEEE-eccHHHHHhCCEEEE
Confidence             235999999999    99999996 5  8999999  999954333 2222222334577777 88888777666 899


Q ss_pred             hcCCcEEEEecccchhh
Q psy16304        402 MSCNCQVYLISAKNLSN  418 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~~  418 (537)
                      +++|+++..|+++++.+
T Consensus       686 L~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       686 LKKGSVVEMGTHKQLME  702 (711)
T ss_pred             EECCEEEEeeCHHHHHh
Confidence            99999999999888743

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.83  E-value=7.1e-22  Score=220.18  Aligned_cols=267  Identities=12%  Similarity=0.017  Sum_probs=174.0

Q ss_pred             ccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCC
Q psy16304         89 YNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLS  168 (537)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~  168 (537)
                      +-.+..-..|+..++..+.+++....+++++.++++.+........+.+.          ....+.+++++..|++..  
T Consensus       288 ~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~vsf~y~~~~--  355 (582)
T PRK11176        288 FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIER----------AKGDIEFRNVTFTYPGKE--  355 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCC----------CCCeEEEEEEEEecCCCC--
Confidence            34455678899999999999999999999988877643221100000000          011356677776664321  


Q ss_pred             CCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeec
Q psy16304        169 DDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL  248 (537)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~  248 (537)
                       .             .+-.++++.+++|++++|+|+||+|||||+++|+|.    +.|+.|    +|.++| .++..++.
T Consensus       356 -~-------------~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl----~~p~~G----~I~i~g-~~i~~~~~  412 (582)
T PRK11176        356 -V-------------PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF----YDIDEG----EILLDG-HDLRDYTL  412 (582)
T ss_pred             -C-------------ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCc----eEEECC-EEhhhcCH
Confidence             0             122345678889999999999999999999999999    999999    999987 66554443


Q ss_pred             CCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-e-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccC
Q psy16304        249 GGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-M-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAG  322 (537)
Q Consensus       249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~g  322 (537)
                             ..+++.+++++|++.++.. ..+++.+.. + .+.++...+.+..   +++..++....     ..+|..+  
T Consensus       413 -------~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gld-----t~ig~~g--  478 (582)
T PRK11176        413 -------ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD-----TVIGENG--  478 (582)
T ss_pred             -------HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccC-----ceeCCCC--
Confidence                   2344789999999998865 334443321 1 1111111111100   01111111000     1333222  


Q ss_pred             ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304        323 KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRC  397 (537)
Q Consensus       323 Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~  397 (537)
                           ..|||||+||+    ++||+++. +  |+++++|  |++++...  .+.+.+.+. .+.+++++ +|+......+
T Consensus       479 -----~~LSGGqrQRi----~LARall~-~--~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V-tHr~~~~~~~  545 (582)
T PRK11176        479 -----VLLSGGQRQRI----AIARALLR-D--SPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRLSTIEKA  545 (582)
T ss_pred             -----CcCCHHHHHHH----HHHHHHHh-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhC
Confidence                 34999999999    99999997 5  8999999  99994433  333444443 34567777 7888877776


Q ss_pred             h-hhhhcCCcEEEEecccchh
Q psy16304        398 Q-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       398 ~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      + ++++++|+++..|+.+++.
T Consensus       546 D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        546 DEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             CEEEEEECCEEEEeCCHHHHH
Confidence            6 9999999999999988774

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.83  E-value=3e-22  Score=208.00  Aligned_cols=229  Identities=15%  Similarity=0.137  Sum_probs=146.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...-.     .+.........+..+++|.+.+|+++||+|+||||||||+++|+|.    ..|++| 
T Consensus         7 ~~l~v~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl----~~p~~G-   76 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGK-----QWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL----VKATDG-   76 (331)
T ss_pred             ceEEEeCeEEEECCCCcc-----ccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC----CCCCCc-
Confidence            467889999987532100     0000000012345677888999999999999999999999999999    899999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCC---
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLP---  304 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~---  304 (537)
                         +|.++| .++...+.   ...+ .++..++++||++.  +++.++.            .+++.+.+.... .+.   
T Consensus        77 ---~I~~~G-~~i~~~~~---~~~~-~~r~~i~~v~Q~~~~~l~p~~tv------------~~~i~~~l~~~~~~~~~~~  136 (331)
T PRK15079         77 ---EVAWLG-KDLLGMKD---DEWR-AVRSDIQMIFQDPLASLNPRMTI------------GEIIAEPLRTYHPKLSRQE  136 (331)
T ss_pred             ---EEEECC-EECCcCCH---HHHH-HHhCceEEEecCchhhcCCCCCH------------HHHHHHHHHHhccCCCHHH
Confidence               999987 44322211   1222 23357999999973  3333221            111111000000 010   


Q ss_pred             ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHh
Q psy16304        305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLG  377 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~  377 (537)
                      ........+..+|+......+.+.+|||||+||+    ++|++++. +  |+++++|  |++++..     ..++..+.+
T Consensus       137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL~~l~~  209 (331)
T PRK15079        137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI----GIARALIL-E--PKLIICDEPVSALDVSIQAQVVNLLQQLQR  209 (331)
T ss_pred             HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            0111223344667743223455899999999999    99999996 5  8999999  9999332     233344444


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+.+++++ +||+......+  +++|++|+++..+...++.
T Consensus       210 ~~~~til~i-THdl~~~~~~~dri~vl~~G~ive~g~~~~i~  250 (331)
T PRK15079        210 EMGLSLIFI-AHDLAVVKHISDRVLVMYLGHAVELGTYDEVY  250 (331)
T ss_pred             HcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            445677777 89998887543  9999999999988877663

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.83  E-value=6e-22  Score=194.85  Aligned_cols=191  Identities=16%  Similarity=0.124  Sum_probs=123.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc-----cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL-----VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~-----~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    .     .|++|    +|.++| ..+...+.    . ...++..+
T Consensus        18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i   83 (227)
T cd03260          18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL----NDLIPGAPDEG----EVLLDG-KDIYDLDV----D-VLELRRRV   83 (227)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccccCCCCCe----EEEECC-EEhhhcch----H-HHHHHhhE
Confidence            45677889999999999999999999999999    8     89999    898887 44322110    0 12234678


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccch-hhhhcCCCceee
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSI-IKRILGEPIISL  338 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~l-i~~LSgG~rqrv  338 (537)
                      ++++|++.++ ..+.     .+       ++...........   ...+....+..+|+........ +.+|||||+||+
T Consensus        84 ~~~~q~~~~~-~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv  150 (227)
T cd03260          84 GMVFQKPNPF-PGSI-----YD-------NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL  150 (227)
T ss_pred             EEEecCchhc-cccH-----HH-------HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence            9999997654 2221     11       0000000000000   0111223344566654433333 589999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                          +++++++. +  |+++++|  |+|++..  ..+++   ++.++  .+++++ +|+....... + ++++++|+++.
T Consensus       151 ----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~  220 (227)
T cd03260         151 ----CLARALAN-E--PEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIV-THNMQQAARVADRTAFLLNGRLVE  220 (227)
T ss_pred             ----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEE-eccHHHHHHhCCEEEEEeCCEEEE
Confidence                99999996 5  8999999  9999433  22333   33332  566666 8998876643 3 88999999988


Q ss_pred             Eecccc
Q psy16304        410 LISAKN  415 (537)
Q Consensus       410 ~g~nkd  415 (537)
                      .+.+++
T Consensus       221 ~g~~~~  226 (227)
T cd03260         221 FGPTEQ  226 (227)
T ss_pred             ecCccc
Confidence            776543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=4.8e-22  Score=206.16  Aligned_cols=226  Identities=15%  Similarity=0.091  Sum_probs=146.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...-.....        ..+.+..+++|.+.+|+++||+|+||||||||+++|+|.    ..|++| 
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl----~~p~~G-   70 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPE--------RLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI----ETPTGG-   70 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccC--------CceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC----CCCCCc-
Confidence            4678889998875321100000        012345667888999999999999999999999999999    899999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L  305 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~  305 (537)
                         +|.++| .++..++.   ... ...+..++++||++.  +.+.++..            +.+.+.+.......   .
T Consensus        71 ---~i~~~g-~~l~~~~~---~~~-~~~r~~i~~v~Q~~~~~l~p~~~v~------------~~l~~~~~~~~~~~~~~~  130 (327)
T PRK11308         71 ---ELYYQG-QDLLKADP---EAQ-KLLRQKIQIVFQNPYGSLNPRKKVG------------QILEEPLLINTSLSAAER  130 (327)
T ss_pred             ---EEEECC-EEcCcCCH---HHH-HHHhCCEEEEEcCchhhcCCccCHH------------HHHHHHHHHccCCCHHHH
Confidence               999987 54432211   111 223357999999974  22221110            00000000000000   0


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~  378 (537)
                      ..+....+..+|+........+.+|||||+||+    ++|++++. +  |+++++|  |++++..     ..++..+.++
T Consensus       131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv----~iArAL~~-~--P~lLilDEPts~LD~~~~~~i~~lL~~l~~~  203 (327)
T PRK11308        131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI----AIARALML-D--PDVVVADEPVSALDVSVQAQVLNLMMDLQQE  203 (327)
T ss_pred             HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence            112233455677754333556899999999999    99999996 5  8999999  9999432     2233444444


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.+++++ +||.......+  +++|+.|+++..|...++.
T Consensus       204 ~g~til~i-THdl~~~~~~adrv~vm~~G~ive~g~~~~~~  243 (327)
T PRK11308        204 LGLSYVFI-SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF  243 (327)
T ss_pred             cCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            45677777 89998887543  9999999999998877764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.83  E-value=9.3e-22  Score=223.61  Aligned_cols=266  Identities=14%  Similarity=0.072  Sum_probs=173.5

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA  172 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~  172 (537)
                      .....|+..+...+.+++....+++++.++++.+........+...   .   .  ....+.+++++..|++..   .  
T Consensus       412 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~---~---~--~~~~I~~~~vsf~Y~~~~---~--  478 (694)
T TIGR03375       412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHR---P---R--LQGEIEFRNVSFAYPGQE---T--  478 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC---C---C--ccceEEEEEEEEEeCCCC---c--
Confidence            3467899999999999999999999999998865432111110000   0   0  012356777777765321   0  


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                                 .+-.++++.+++|++++|+|+||||||||+++|+|.    +.|++|    +|.++| .++..++.    
T Consensus       479 -----------~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~l~~~~~----  534 (694)
T TIGR03375       479 -----------PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEG----SVLLDG-VDIRQIDP----  534 (694)
T ss_pred             -----------cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEhhhCCH----
Confidence                       112345678889999999999999999999999999    999999    999997 66654443    


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchh
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSII  327 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li  327 (537)
                         ..+++.+++|+|++.++.. ..+++.+.-. .+.++..+..+..   +.+..++....     ..+|..       -
T Consensus       535 ---~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~-----T~i~e~-------G  599 (694)
T TIGR03375       535 ---ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLD-----MQIGER-------G  599 (694)
T ss_pred             ---HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccccc-----ceecCC-------C
Confidence               2344889999999998765 3333322111 1111111110000   01111111000     123322       2


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      ..|||||+||+    ++||+++. +  |++++||  |++++...  .+.+.+.+. .+.+++++ +|+......++ +++
T Consensus       600 ~~LSgGQrQRl----alARall~-~--p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI-tHrl~~~~~~D~iiv  671 (694)
T TIGR03375       600 RSLSGGQRQAV----ALARALLR-D--PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV-THRTSLLDLVDRIIV  671 (694)
T ss_pred             CCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHhCCEEEE
Confidence            34999999999    99999996 4  8999999  99994433  333444332 23566666 78888777666 999


Q ss_pred             hcCCcEEEEecccchhh
Q psy16304        402 MSCNCQVYLISAKNLSN  418 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~~  418 (537)
                      +++|+++..|+++++.+
T Consensus       672 l~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       672 MDNGRIVADGPKDQVLE  688 (694)
T ss_pred             EeCCEEEeeCCHHHHHH
Confidence            99999999998888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.83  E-value=9.5e-22  Score=192.56  Aligned_cols=189  Identities=16%  Similarity=0.133  Sum_probs=120.7

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| .++..++.   ...+......+++++
T Consensus        22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~v~   89 (221)
T TIGR02211        22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL----DNPTSG----EVLFNG-QSLSKLSS---NERAKLRNKKLGFIY   89 (221)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEhhhcCH---hHHHHHHHhcEEEEe
Confidence            345677889999999999999999999999999    999999    898887 44432221   111111225689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.+++..+.     .+       ++...  +...............+..+|+.... ...+.+|||||+||+    ++
T Consensus        90 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  152 (221)
T TIGR02211        90 QFHHLLPDFTA-----LE-------NVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-NHRPSELSGGERQRV----AI  152 (221)
T ss_pred             cccccCCCCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence            99775543222     00       00000  00000000001112234456765443 455889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQV  408 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii  408 (537)
                      +++++. +  |++++||  |+|++..  ..+   +..+.++.+.+++++ +|+......++ ++++++|+++
T Consensus       153 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       153 ARALVN-Q--PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVV-THDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHhC-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHhhcCEEEEEeCCEec
Confidence            999996 5  8999999  9999332  222   233333334566666 78887766555 7888888763

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.83  E-value=9.2e-22  Score=195.08  Aligned_cols=205  Identities=15%  Similarity=0.067  Sum_probs=126.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| .++..++.    .....++..+++++|
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~q   85 (241)
T cd03256          19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGL----VEPTSG----SVLIDG-TDINKLKG----KALRQLRRQIGMIFQ   85 (241)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEEECC-EeccccCH----hHHHHHHhccEEEcc
Confidence            45677889999999999999999999999999    899999    898887 44432211    001123467999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++..+..-.+.+. ................. ....+....+..+|+.... ...+.+|||||+||+    +++++
T Consensus        86 ~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~a  158 (241)
T cd03256          86 QFNLIERLSVLENVLSG-RLGRRSTWRSLFGLFPK-EEKQRALAALERVGLLDKA-YQRADQLSGGQQQRV----AIARA  158 (241)
T ss_pred             cCcccccCcHHHHHHhh-hcccchhhhhhcccCcH-HHHHHHHHHHHHcCChhhh-CCCcccCCHHHHHHH----HHHHH
Confidence            98765432220000000 00000000000000000 0001112234456665443 344789999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++. +  |++++||  |+|++..  ..   .+..+.++.+.+++++ +|+.......+  ++++++|+++..+..+++
T Consensus       159 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         159 LMQ-Q--PKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS-LHQVDLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             Hhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            996 5  8999999  9999332  22   2334333334566777 88888777433  889999999877665554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.83  E-value=9.8e-22  Score=192.07  Aligned_cols=186  Identities=15%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++| ..+..++.   .......+..+++++
T Consensus        21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~   88 (218)
T cd03255          21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL----DRPTSG----EVRVDG-TDISKLSE---KELAAFRRRHIGFVF   88 (218)
T ss_pred             eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC----cCCCce----eEEECC-Eehhhcch---hHHHHHHhhcEEEEe
Confidence            345677889999999999999999999999999    999999    898887 44322211   111122335789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+..     +       ++..... .....   ........+..+|+.... ...+.+|||||+||+    +
T Consensus        89 q~~~~~~~~tv~-----e-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~  150 (218)
T cd03255          89 QSFNLLPDLTAL-----E-------NVELPLL-LAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRV----A  150 (218)
T ss_pred             eccccCCCCcHH-----H-------HHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhh-hcChhhcCHHHHHHH----H
Confidence            997755432220     0       0000000 00000   011122334456776543 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      ++++++. +  |++++||  |+|++..     ...+..+.++.+.+++++ +|+......++ ++++++|+
T Consensus       151 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~d~v~~l~~G~  217 (218)
T cd03255         151 IARALAN-D--PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVV-THDPELAEYADRIIELRDGK  217 (218)
T ss_pred             HHHHHcc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ECCHHHHhhhcEEEEeeCCc
Confidence            9999996 5  8999999  9999332     223334433234566666 78877665333 77787776

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0059|consensus

Probab=99.83  E-value=5.9e-22  Score=229.44  Aligned_cols=291  Identities=16%  Similarity=0.143  Sum_probs=190.9

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +.+++++.+++|+++|++|+|||||||++++++|.    ..||+|    ++.+.| .++...-  .    .....+.+||
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~----~~~t~G----~a~i~g-~~i~~~~--~----~~~~~~~iGy  644 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE----TKPTSG----EALIKG-HDITVST--D----FQQVRKQLGY  644 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC----ccCCcc----eEEEec-Ccccccc--c----hhhhhhhccc
Confidence            56678889999999999999999999999999999    999999    777765 3332210  0    1123478999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +||...+...++.         ++    ..+.+..+.++..   ....+..+..+|+...++.. ++.+|||+++|+   
T Consensus       645 CPQ~d~l~~~lT~---------rE----hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-~~~ySgG~kRkL---  707 (885)
T KOG0059|consen  645 CPQFDALWEELTG---------RE----HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-VRTYSGGNKRRL---  707 (885)
T ss_pred             CCchhhhhhhccH---------HH----HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-hhhCCCcchhhH---
Confidence            9999775554444         00    1111122222221   12234455578888887655 999999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCch--hhHHHHHHHHH---hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYL---GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~---~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       .++.+++. +  |++++||  |+|+  ...+.+|.-+.   +++. .++.+ +|.+++.+..|  +.+|.+|++.++|+
T Consensus       708 -s~aialig-~--p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLT-SHsMeE~EaLCtR~aImv~G~l~ciGs  781 (885)
T KOG0059|consen  708 -SFAIALIG-D--PSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILT-SHSMEEAEALCTRTAIMVIGQLRCIGS  781 (885)
T ss_pred             -HHHHHHhc-C--CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEE-cCCHHHHHHHhhhhheeecCeeEEecC
Confidence             99999995 4  8999999  8898  56677885443   3333 67776 89999888776  99999999999999


Q ss_pred             ccchhhhhccchhhhhhhhhhHHhhccccccccCCCCCccccccchhhhhccccCcCCCCCceeecCccccCCCceEEEe
Q psy16304        413 AKNLSNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSKKKQPRKRKKKVAPLNTDDETELSLPPLRLLGRNVTHTD  492 (537)
Q Consensus       413 nkdl~~~~~~~~~~~~~le~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~k~~~~l~~~~~~~l~fp~~~~~g~~v~~~e  492 (537)
                      +..+++++.....-...+..............          ..-+....+...    .....+.+|.....-...++..
T Consensus       782 ~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~----------~~~p~a~~~~~~----~~~~~~~ip~~~~~~~~~vF~~  847 (885)
T KOG0059|consen  782 PQELKSRYGSGYTLTVRIKELPEVSEVEKLLQ----------NRFPGAVLKERH----AGLLAFEIPKDEVVSLSEVFLA  847 (885)
T ss_pred             hHHHHhhcCCcEEEEEEECCCcccchHHHHHH----------HhCCCcchhhhh----hceEEEEcccchhhHHHHHHHH
Confidence            99998888765443322221100000000000          000000000000    0012223321111111246677


Q ss_pred             ecccccccccCCCcCC-chHHHHHHHHhhhhhhcCC
Q psy16304        493 SNQEQRCLNLSSDPLG-TGAFNVLHAIATDAARRNP  527 (537)
Q Consensus       493 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  527 (537)
                      ++..+.++|+.+-.++ +|+|+||+++|+..+..+.
T Consensus       848 le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~~~~~  883 (885)
T KOG0059|consen  848 LEKAKESFGIEDYSLSQTTLEDVFLILAKTQEDDNS  883 (885)
T ss_pred             HHHHHHhcCHHHHHHHHhhHHHHHHHHhcccccccc
Confidence            8999999999999999 9999999999999987664

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.82  E-value=1.2e-21  Score=193.70  Aligned_cols=204  Identities=15%  Similarity=0.084  Sum_probs=126.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+..++      .....+..+++++|
T Consensus        18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~v~q   82 (236)
T cd03219          18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF----LRPTSG----SVLFDG-EDITGLP------PHEIARLGIGRTFQ   82 (236)
T ss_pred             CceEEecCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc----eEEECC-EECCCCC------HHHHHhcCEEEEec
Confidence            45677889999999999999999999999999    899999    898887 4332111      11122356899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++..+..-.+.+.........+...................+..+|+.... ...+.+|||||+||+    +++++
T Consensus        83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~a  157 (236)
T cd03219          83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-DRPAGELSYGQQRRL----EIARA  157 (236)
T ss_pred             ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-hCChhhCCHHHHHHH----HHHHH
Confidence            9876554322000000000000000000000000000011122334466776543 445899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++. +  |+++++|  |+|++..  ..++   .++.+ .+.+++++ +|+....... + ++++++|+++..+...++
T Consensus       158 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         158 LAT-D--PKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLV-EHDMDVVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             Hhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence            996 5  8999999  9999433  2222   33333 34566666 8998887653 3 889999999877665554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.82  E-value=1.2e-21  Score=218.00  Aligned_cols=262  Identities=14%  Similarity=0.104  Sum_probs=168.3

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF  175 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~  175 (537)
                      ..|+..+...+..++.+..+++++.++++.+....++..+...         -....+.+++++..|++..   .     
T Consensus       291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~---------~~~~~i~~~~v~f~y~~~~---~-----  353 (574)
T PRK11160        291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAA---------ADQVSLTLNNVSFTYPDQP---Q-----  353 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCC---------CCCCeEEEEEEEEECCCCC---C-----
Confidence            3577778888899999999999999998865543322111000         0022466778877764321   0     


Q ss_pred             hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhh
Q psy16304        176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR  255 (537)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r  255 (537)
                              ..-.++++.+++|++++|+|+||||||||+++|+|.    ++|++|    +|.++| .++..++.       
T Consensus       354 --------~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~----~~p~~G----~I~i~g-~~i~~~~~-------  409 (574)
T PRK11160        354 --------PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA----WDPQQG----EILLNG-QPIADYSE-------  409 (574)
T ss_pred             --------cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEhhhCCH-------
Confidence                    012345677889999999999999999999999999    999999    999987 66554443       


Q ss_pred             HHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCcc-ccCCccEEEeccCccCccchhhhhcC
Q psy16304        256 TIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV-DFRSVPILVLGLDNAGKSSIIKRILG  332 (537)
Q Consensus       256 ~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~-~~~~~~L~llGl~~~gKs~li~~LSg  332 (537)
                      ..+++.+++++|++.++.. ..+++.+... .+.++.   .+.++..+ +... ...+-.=..+|..       ...|||
T Consensus       410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i---~~al~~~~-l~~~i~~p~GldT~vge~-------g~~LSg  478 (574)
T PRK11160        410 AALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL---IEVLQQVG-LEKLLEDDKGLNAWLGEG-------GRQLSG  478 (574)
T ss_pred             HHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH---HHHHHHcC-CHHHHcCccccCchhcCC-------CCCCCH
Confidence            3344789999999988765 2333322111 111111   11111100 0000 0000000022221       345999


Q ss_pred             CCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        333 EPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       333 G~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      ||+||+    ++||+++. +  |+++++|  |++++...  .+.+.+.+. .+.+++++ +|+......++ ++++++|+
T Consensus       479 GqrqRi----alARall~-~--~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviii-tHr~~~~~~~d~i~~l~~G~  550 (574)
T PRK11160        479 GEQRRL----GIARALLH-D--APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMI-THRLTGLEQFDRICVMDNGQ  550 (574)
T ss_pred             HHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecChhHHHhCCEEEEEeCCe
Confidence            999999    99999996 5  8999999  99994333  233444332 23466666 78877777666 89999999


Q ss_pred             EEEEecccchh
Q psy16304        407 QVYLISAKNLS  417 (537)
Q Consensus       407 ii~~g~nkdl~  417 (537)
                      ++..|+..++.
T Consensus       551 i~~~g~~~~l~  561 (574)
T PRK11160        551 IIEQGTHQELL  561 (574)
T ss_pred             EEEeCCHHHHH
Confidence            99999887774

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.82  E-value=1.5e-21  Score=196.05  Aligned_cols=199  Identities=15%  Similarity=0.140  Sum_probs=132.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      ..+.++++.+.|++..+.                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.| 
T Consensus        11 ~~l~i~~l~~~~~~~~il------------------~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl----~~p~~G-   67 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVL------------------NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL----ETPSAG-   67 (257)
T ss_pred             CcEEEEEEEEEECCccee------------------eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe-
Confidence            456778888877543222                  234577889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFR  309 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~  309 (537)
                         +|.++| ..+        ..    ++..+++++|++.+++..+.                .+.+.. ... ....+.
T Consensus        68 ---~i~~~g-~~~--------~~----~~~~i~~v~q~~~l~~~~tv----------------~enl~~~~~~-~~~~~~  114 (257)
T PRK11247         68 ---ELLAGT-APL--------AE----AREDTRLMFQDARLLPWKKV----------------IDNVGLGLKG-QWRDAA  114 (257)
T ss_pred             ---EEEECC-EEH--------HH----hhCceEEEecCccCCCCCcH----------------HHHHHhcccc-hHHHHH
Confidence               888765 321        11    23568999999775543222                010000 000 000112


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++...     ..+..+.++.+.+
T Consensus       115 ~~~l~~~gl~~~~-~~~~~~LSgGqkqrl----~laraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t  186 (257)
T PRK11247        115 LQALAAVGLADRA-NEWPAALSGGQKQRV----ALARALIH-R--PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT  186 (257)
T ss_pred             HHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence            2233456665443 344889999999999    99999996 5  8999999  99994332     2233443333556


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++ +|+.......+  ++++++|+++..+..+
T Consensus       187 viiv-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        187 VLLV-THDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEE-eCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            7777 89988765433  8899999988766543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.82  E-value=1.7e-21  Score=192.84  Aligned_cols=191  Identities=15%  Similarity=0.092  Sum_probs=124.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+...+    ..   . ...+++++|
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~i~~~~----~~---~-~~~i~~~~q   81 (236)
T TIGR03864        19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL----YVAQEG----QISVAG-HDLRRAP----RA---A-LARLGVVFQ   81 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcccCC----hh---h-hhhEEEeCC
Confidence            45677889999999999999999999999999    999999    899887 4442111    11   1 146899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.++...+.     .+       ++.... ......   ........+..+|+.... ...+.+|||||+||+    ++
T Consensus        82 ~~~~~~~~t~-----~~-------~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl----~l  143 (236)
T TIGR03864        82 QPTLDLDLSV-----RQ-------NLRYHA-ALHGLSRAEARERIAALLARLGLAERA-DDKVRELNGGHRRRV----EI  143 (236)
T ss_pred             CCCCcccCcH-----HH-------HHHHHH-HhcCCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----HH
Confidence            8775443222     00       000000 000000   001112233355665443 344889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++. +  |+++++|  |+|++..     ...+..+.++.+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus       144 aral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (236)
T TIGR03864       144 ARALLH-R--PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWA-THLVDEIEADDRLVVLHRGRVLADGAAAEL  219 (236)
T ss_pred             HHHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecChhhHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            999996 5  8999999  9999332     223334433224566666 78887776544 889999999887766655


Q ss_pred             h
Q psy16304        417 S  417 (537)
Q Consensus       417 ~  417 (537)
                      .
T Consensus       220 ~  220 (236)
T TIGR03864       220 R  220 (236)
T ss_pred             H
Confidence            3

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.82  E-value=1.1e-21  Score=191.18  Aligned_cols=185  Identities=16%  Similarity=0.118  Sum_probs=120.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++...     ..    ++..+++++
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~-----~~----~~~~i~~v~   78 (213)
T cd03259          17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL----ERPDSG----EILIDG-RDVTGV-----PP----ERRNIGMVF   78 (213)
T ss_pred             cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEcCcC-----ch----hhccEEEEc
Confidence            345677889999999999999999999999999    999999    898887 433211     11    125689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+.     .+       ++......  ........+....+..+|+.... ...+.+|||||+||+    ++
T Consensus        79 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~l  141 (213)
T cd03259          79 QDYALFPHLTV-----AE-------NIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-NRYPHELSGGQQQRV----AL  141 (213)
T ss_pred             CchhhccCCcH-----HH-------HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----HH
Confidence            98775543222     00       00000000  00000001112234456766543 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++...  .++   .++.++.+.+++++ +|+.......+  ++++++|+++..
T Consensus       142 a~al~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~  212 (213)
T cd03259         142 ARALAR-E--PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRIVQV  212 (213)
T ss_pred             HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhcCEEEEEECCEEEec
Confidence            999996 5  8999999  99994332  222   33333234566666 88888765533  888899987653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.82  E-value=1.5e-21  Score=197.26  Aligned_cols=196  Identities=15%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+..++.   ...+......+++++
T Consensus        41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl----~~p~~G----~i~i~g-~~~~~~~~---~~~~~~~~~~i~~v~  108 (269)
T cd03294          41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL----IEPTSG----KVLIDG-QDIAAMSR---KELRELRRKKISMVF  108 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe----EEEECC-EEccccCh---hhhhhhhcCcEEEEe
Confidence            456678889999999999999999999999999    999999    899887 44422211   111112235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+.            .+++...+. .....   ...+....+..+|+.... ...+.+|||||+||+    +
T Consensus       109 q~~~~~~~~tv------------~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~  170 (269)
T cd03294         109 QSFALLPHRTV------------LENVAFGLE-VQGVPRAEREERAAEALELVGLEGWE-HKYPDELSGGMQQRV----G  170 (269)
T ss_pred             cCcccCCCCcH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHh-hCCcccCCHHHHHHH----H
Confidence            99775543222            000000000 00000   001122234456766443 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |++++||  |+|++...     ..+..+.+..+.+++++ +|+.......+  ++++++|+++..+...
T Consensus       171 lAral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~  246 (269)
T cd03294         171 LARALAV-D--PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI-THDLDEALRLGDRIAIMKDGRLVQVGTPE  246 (269)
T ss_pred             HHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            9999996 5  8999999  99994332     22334433334566666 88888765433  8889999998887766


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      ++
T Consensus       247 ~~  248 (269)
T cd03294         247 EI  248 (269)
T ss_pred             HH
Confidence            65

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.82  E-value=9e-22  Score=197.54  Aligned_cols=220  Identities=15%  Similarity=0.155  Sum_probs=136.8

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+...+                  ..++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|
T Consensus         4 ~~~l~~~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G   61 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRKG------------------CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR----LAPDAG   61 (258)
T ss_pred             CceEEEeeeEEEcCCcee------------------eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC
Confidence            456778888887654222                  2234577889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCC--chhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccC--cC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGS--EDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HL  303 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~--~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l  303 (537)
                          +|.++| ......+....  ...+..++..+++++|++.  ++...+.     .       +++...+....  ..
T Consensus        62 ----~i~~~g-~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~-----~-------~~i~~~~~~~~~~~~  124 (258)
T PRK11701         62 ----EVHYRM-RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA-----G-------GNIGERLMAVGARHY  124 (258)
T ss_pred             ----EEEECC-ccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH-----H-------HHHHHHHHHhccCcH
Confidence                898887 33000001111  1111223456899999864  1111111     0       00000000000  00


Q ss_pred             -CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHH
Q psy16304        304 -PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQY  375 (537)
Q Consensus       304 -~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~  375 (537)
                       .........+..+|+........+.+|||||+||+    +++++++. +  |+++++|  |+|++...  .++   ..+
T Consensus       125 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~  197 (258)
T PRK11701        125 GDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL----QIARNLVT-H--PRLVFMDEPTGGLDVSVQARLLDLLRGL  197 (258)
T ss_pred             HHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence             00011122334556642122345889999999999    99999996 5  8999999  99994332  222   333


Q ss_pred             HhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+..+.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus       198 ~~~~~~tii~i-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  239 (258)
T PRK11701        198 VRELGLAVVIV-THDLAVARLLAHRLLVMKQGRVVESGLTDQV  239 (258)
T ss_pred             HHhcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            33335667777 899988875 33 899999999888777665

>KOG0057|consensus

Probab=99.82  E-value=8.1e-22  Score=208.31  Aligned_cols=270  Identities=14%  Similarity=0.084  Sum_probs=172.5

Q ss_pred             eeeeccchhhhh-HHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCccc
Q psy16304         85 DVVLYNMYKAEI-WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQT  163 (537)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~  163 (537)
                      |-|.||.+.-.+ .|+--|+..+..+.++...+..++.....+..+.+.++|.+.          .+..+.++++...|+
T Consensus       293 dlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~----------~~~~I~F~dV~f~y~  362 (591)
T KOG0057|consen  293 DLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIEL----------FGGSIEFDDVHFSYG  362 (591)
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCccc----------CCCcEEEEeeEEEeC
Confidence            455666665443 466667777766666666666655555555555554334333          233466677777665


Q ss_pred             CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEE
Q psy16304        164 SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV  243 (537)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i  243 (537)
                      ...                 .+...+++++.+|+++||+|+|||||||++|+|.+.    .+ .+|    +|.++| .++
T Consensus       363 ~k~-----------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF----~d-~sG----~I~IdG-~di  415 (591)
T KOG0057|consen  363 PKR-----------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF----FD-YSG----SILIDG-QDI  415 (591)
T ss_pred             CCC-----------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH----hc-cCC----cEEECC-eeH
Confidence            333                 122345678889999999999999999999999999    88 999    999998 655


Q ss_pred             EEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEecc
Q psy16304        244 FLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGL  318 (537)
Q Consensus       244 ~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl  318 (537)
                      .-++.       ...++.+|+|||+..+|.+ ...++.+.-- .+.++..+..+..   +.+..++....     ..+|.
T Consensus       416 k~~~~-------~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~-----T~VGe  483 (591)
T KOG0057|consen  416 KEVSL-------ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQ-----TLVGE  483 (591)
T ss_pred             hhhCh-------HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccch-----hhHhh
Confidence            44443       3445889999999998854 2222211111 1111111111100   01111111110     12443


Q ss_pred             CccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHh-cCCEEEEEEeCCCcch
Q psy16304        319 DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLG-TVSQTLLVSHSLSGRP  393 (537)
Q Consensus       319 ~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~-~~~~vIlVvdshd~~~  393 (537)
                      .+       ..|||||+||+    +++|+++. +  ++++++|  |+.+  +..+++.+.+.+ ..+.+++.+ .|+...
T Consensus       484 rG-------~~LSGGekQrv----slaRa~lK-d--a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I-vH~l~l  548 (591)
T KOG0057|consen  484 RG-------LMLSGGEKQRV----SLARAFLK-D--APILLLDEATSALDSETEREILDMIMDVMSGRTVIMI-VHRLDL  548 (591)
T ss_pred             cc-------cccccchHHHH----HHHHHHhc-C--CCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE-Eecchh
Confidence            32       34999999999    99999995 4  8999999  9999  444556676666 333344444 466667


Q ss_pred             hhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        394 DDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       394 ~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ...++ +.++++|++..+|+..++..
T Consensus       549 l~~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  549 LKDFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             HhcCCEEEEEECCeeEEeccHHHHhh
Confidence            77766 99999999999999998843

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.82  E-value=1.5e-21  Score=218.16  Aligned_cols=260  Identities=14%  Similarity=0.060  Sum_probs=169.2

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      ....|+..++..+..++....+.+++.++++.+....... ...          ....-+.++++...|+...       
T Consensus       293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~----------~~~~~i~~~~v~f~y~~~~-------  354 (592)
T PRK10790        293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRP----------LQSGRIDIDNVSFAYRDDN-------  354 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccC----------CCCCeEEEEEEEEEeCCCC-------
Confidence            5678999999999999999999999988877432110000 000          0011245666666554211       


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                                .+-.++++.+++|++++|+|++|+|||||+++|+|.    +.|+.|    +|.++| .++..++.     
T Consensus       355 ----------~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~idg-~~i~~~~~-----  410 (592)
T PRK10790        355 ----------LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY----YPLTEG----EIRLDG-RPLSSLSH-----  410 (592)
T ss_pred             ----------ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCc----eEEECC-EEhhhCCH-----
Confidence                      012355678889999999999999999999999999    999999    999997 66655443     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR  329 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~  329 (537)
                        ..+++.+++++|++.++.. ..+++.+.-+.+.++..++.+..   +.+..++....     ..+|..       -..
T Consensus       411 --~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gld-----t~i~e~-------g~~  476 (592)
T PRK10790        411 --SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLY-----TPLGEQ-------GNN  476 (592)
T ss_pred             --HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccc-----ccccCC-------CCC
Confidence              3445889999999998866 33333222111111111111100   01111110000     012221       235


Q ss_pred             hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      |||||+||+    ++||+++. +  |+++++|  |++++...  .+.+.+.+. .+.+++++ +|+......++ +++++
T Consensus       477 LSGGqrQRi----alARaLl~-~--~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIiv-tHr~~~l~~~D~ii~l~  548 (592)
T PRK10790        477 LSVGQKQLL----ALARVLVQ-T--PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVI-AHRLSTIVEADTILVLH  548 (592)
T ss_pred             CCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhCCEEEEEE
Confidence            999999999    99999996 5  8999999  99994333  222333322 23566666 78887777666 89999


Q ss_pred             CCcEEEEecccchh
Q psy16304        404 CNCQVYLISAKNLS  417 (537)
Q Consensus       404 ~G~ii~~g~nkdl~  417 (537)
                      +|+++..|+.+++.
T Consensus       549 ~G~i~~~G~~~~L~  562 (592)
T PRK10790        549 RGQAVEQGTHQQLL  562 (592)
T ss_pred             CCEEEEEcCHHHHH
Confidence            99999999988874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.82  E-value=9.4e-22  Score=238.65  Aligned_cols=196  Identities=17%  Similarity=0.146  Sum_probs=140.4

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +..++++.+.+|+++||+|+||||||||+++|+|.    ..|++|    +|.++| .++..       . ....++.+|+
T Consensus      1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl----l~ptsG----~I~i~G-~~i~~-------~-~~~~r~~IGy 2016 (2272)
T TIGR01257      1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD----TTVTSG----DATVAG-KSILT-------N-ISDVHQNMGY 2016 (2272)
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC----CCCCcc----EEEECC-EECcc-------h-HHHHhhhEEE
Confidence            55677888999999999999999999999999999    999999    998887 44310       1 1123367999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      ++|...++..++.                .+.+..   +.+...   .......+..+|+.... .+.+.+|||||+||+
T Consensus      2017 ~pQ~~~L~~~LTv----------------~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKqRL 2079 (2272)
T TIGR01257      2017 CPQFDAIDDLLTG----------------REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKRKL 2079 (2272)
T ss_pred             EeccccCCCCCCH----------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH
Confidence            9999776554333                111111   111110   01122334567776654 455899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHh--cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~--~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                          ++|++++. +  |++++||  |+|+  ...+.+|+.+.+  +.+.+|+++ +|++++.+..+  +++|++|+++..
T Consensus      2080 ----slA~ALi~-~--P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt-TH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257      2080 ----STAIALIG-C--PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred             ----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEE
Confidence                99999996 4  8999999  9999  444556654432  223466666 89998887655  999999999999


Q ss_pred             ecccchhhhhcc
Q psy16304        411 ISAKNLSNGFKK  422 (537)
Q Consensus       411 g~nkdl~~~~~~  422 (537)
                      |++.++++++..
T Consensus      2152 Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257      2152 GTIQHLKSKFGD 2163 (2272)
T ss_pred             CCHHHHHHHhCC
Confidence            999998776653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.82  E-value=2.6e-21  Score=179.06  Aligned_cols=187  Identities=17%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      ++.+..|++++|+||+|||||||+|+|+|.    ..|.+|    .+.++| .+.     .+.....    +-++++||+.
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF----~~P~~G----~i~i~g-~d~-----t~~~P~~----RPVSmlFQEn   80 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGF----ETPASG----EILING-VDH-----TASPPAE----RPVSMLFQEN   80 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhc----cCCCCc----eEEEcC-eec-----CcCCccc----CChhhhhhcc
Confidence            356779999999999999999999999999    999999    888876 333     2222222    4578899999


Q ss_pred             CCCCCccceeeEEeecCcccccCCcccccccCcCCc----cccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL----VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~----~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      .+|...+..            +++.-  ..-..++.    ..+.+.....+|+.+.. .+++.+||||||||+    ++|
T Consensus        81 NLFaHLtV~------------qNigL--Gl~P~LkL~a~~r~~v~~aa~~vGl~~~~-~RLP~~LSGGqRQRv----ALA  141 (231)
T COG3840          81 NLFAHLTVA------------QNIGL--GLSPGLKLNAEQREKVEAAAAQVGLAGFL-KRLPGELSGGQRQRV----ALA  141 (231)
T ss_pred             ccchhhhhh------------hhhcc--cCCcccccCHHHHHHHHHHHHHhChhhHh-hhCccccCchHHHHH----HHH
Confidence            988765541            11111  11111111    11222334478888887 456999999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      |.++. +  -++++||  .+.+     .+...+..++..+.+.+++++ +|..+......  ++++++|++...+...++
T Consensus       142 RclvR-~--~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV-TH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~  217 (231)
T COG3840         142 RCLVR-E--QPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV-THHPEDAARIADRVVFLDNGRIAAQGSTQEL  217 (231)
T ss_pred             HHHhc-c--CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence            99997 4  4899999  5555     333334456666666677777 67766666544  889999999998887776


Q ss_pred             h
Q psy16304        417 S  417 (537)
Q Consensus       417 ~  417 (537)
                      .
T Consensus       218 ~  218 (231)
T COG3840         218 L  218 (231)
T ss_pred             h
Confidence            3

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.82  E-value=1.4e-21  Score=193.91  Aligned_cols=194  Identities=13%  Similarity=0.102  Sum_probs=124.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+..++     ..    +..+++++|
T Consensus        20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~-----~~----~~~i~~v~q   81 (239)
T cd03296          20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL----ERPDSG----TILFGG-EDATDVP-----VQ----ERNVGFVFQ   81 (239)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcCC-----cc----ccceEEEec
Confidence            45677889999999999999999999999999    999999    899887 4432111     11    256899999


Q ss_pred             CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+.  .+.+...        ....................+..+|+.... ...+.+||+||+||+    +++
T Consensus        82 ~~~~~~~~tv~e~l~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la  148 (239)
T cd03296          82 HYALFRHMTVFDNVAFGLR--------VKPRSERPPEAEIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRV----ALA  148 (239)
T ss_pred             CCcccCCCCHHHHHhhhhh--------hccccccCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----HHH
Confidence            9775543222  0000000        000000000000001112234456665443 444889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |++++||  |+|++..  ..   ++..+.++.+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus       149 ~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         149 RALAV-E--PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV-THDQEEALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence            99996 5  8999999  9999333  22   2234333324566666 7888766543 3 888999999887776655

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=99.82  E-value=1.6e-21  Score=223.18  Aligned_cols=262  Identities=16%  Similarity=0.072  Sum_probs=173.8

Q ss_pred             HHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhc
Q psy16304         99 ILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENF  178 (537)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~  178 (537)
                      ++..+-.+..++.+..+...+++.++..+.++ |.. .+.    ++.. .-...++++|+...|+++.   |        
T Consensus       304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~-~~~-~~~----~~~~-~~~g~ief~nV~FsYPsRp---d--------  365 (1228)
T KOG0055|consen  304 LGQASPHLSAFAKARAAAYRIFETIDRKPSID-PYS-KGG----RVLS-SIKGEIEFRNVCFSYPSRP---D--------  365 (1228)
T ss_pred             hhccccchHHHhccccchHHHHHHhcCCCCCC-ccc-ccC----Cccc-ccccceEEEEEEecCCCCC---c--------
Confidence            44455556666777778888888777554443 221 111    0000 0134667788888777664   2        


Q ss_pred             ccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHH
Q psy16304        179 LDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW  258 (537)
Q Consensus       179 ~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~  258 (537)
                          +.+-+.+++.+++|+.++|||++|+||||++.+|.+.    +.|++|    +|.++| .++..++.   ..+    
T Consensus       366 ----v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf----ydP~~G----~V~idG-~di~~~~~---~~l----  425 (1228)
T KOG0055|consen  366 ----VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF----YDPTSG----EVLIDG-EDIRNLNL---KWL----  425 (1228)
T ss_pred             ----chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCc----eEEEcC-ccchhcch---HHH----
Confidence                2234456788889999999999999999999999999    999999    999997 76666655   233    


Q ss_pred             HhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhhhcCC
Q psy16304        259 KQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE  333 (537)
Q Consensus       259 ~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG  333 (537)
                      +..+|.|+|+|.+|.. ..+++.+.-+ +..++..++.+..   +.+..++...+     ..+|..+.       +||||
T Consensus       426 r~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~-----T~vge~g~-------qLSGG  493 (1228)
T KOG0055|consen  426 RSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYD-----TLVGERGV-------QLSGG  493 (1228)
T ss_pred             HhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhc-----ccccCCCC-------CCChH
Confidence            4789999999987765 4444444442 2222222111111   11111111111     13443332       39999


Q ss_pred             CceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        334 PIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       334 ~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      |+||+    ++||+++. +  |++|+||  |++|+...+.. ++.++   .+. +.+|+ +|+..+...++ ++++++|+
T Consensus       494 QKQRI----AIARalv~-~--P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr-TTivV-aHRLStIrnaD~I~v~~~G~  564 (1228)
T KOG0055|consen  494 QKQRI----AIARALVR-N--PKILLLDEATSALDAESERVVQEALDKASKGR-TTIVV-AHRLSTIRNADKIAVMEEGK  564 (1228)
T ss_pred             HHHHH----HHHHHHHh-C--CCEEEecCcccccCHHHHHHHHHHHHHhhcCC-eEEEE-eeehhhhhccCEEEEEECCE
Confidence            99999    99999996 4  8999999  99996554433 32222   334 55555 78888888877 99999999


Q ss_pred             EEEEecccchhhh
Q psy16304        407 QVYLISAKNLSNG  419 (537)
Q Consensus       407 ii~~g~nkdl~~~  419 (537)
                      ++..|++++|...
T Consensus       565 IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  565 IVEQGTHDELIAL  577 (1228)
T ss_pred             EEEecCHHHHHhc
Confidence            9999999998543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.82  E-value=2.5e-21  Score=190.28  Aligned_cols=191  Identities=17%  Similarity=0.157  Sum_probs=118.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| ..+..++.    .....++..+++++
T Consensus        22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~   88 (228)
T cd03257          22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL----LKPTSG----SIIFDG-KDLLKLSR----RLRKIRRKEIQMVF   88 (228)
T ss_pred             cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEccccch----hhHHHhhccEEEEe
Confidence            345677889999999999999999999999999    999999    899887 44322111    00112346799999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCCcc--cc-CCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLV--DF-RSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~--~~-~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      |++.  ++...+.     .+       ++...+.... .....  .. ....+..+|+........+.+|||||+||+  
T Consensus        89 q~~~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--  154 (228)
T cd03257          89 QDPMSSLNPRMTI-----GE-------QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV--  154 (228)
T ss_pred             cCchhhcCCcCCH-----HH-------HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH--
Confidence            9973  2222211     00       0000000000 00000  00 012233456532112344789999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL  410 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~  410 (537)
                        +++++++. +  |++++||  |+|++..     ...+.++.++.+.+++++ +|+...... ++ ++++++|+++..
T Consensus       155 --~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         155 --AIARALAL-N--PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-THDLGVVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             --HHHHHHhc-C--CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEeCCEEEec
Confidence              99999996 5  8999999  9998333     223334433324567777 888887764 33 888999987643

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.82  E-value=5e-21  Score=215.31  Aligned_cols=217  Identities=18%  Similarity=0.158  Sum_probs=134.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+..                  +++|.+.+|+++||+|+||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~i~~ls~~~~~~~il~------------------~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~----~~p~~G--   58 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLD------------------NAELHIEDNERVCLVGRNGAGKSTLMKILNGE----VLLDDG--   58 (635)
T ss_pred             EEEEeeEEEEeCCceeEe------------------CcEEEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCe--
Confidence            567888888876543333                  34577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-----------CCCccceeeEEeecCccc---ccCCcccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-----------RPDSRTCQVYLIMCGVHQ---VSGIPDEL  297 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-----------~~~~~~~il~v~Ds~~~~---~~~l~~~l  297 (537)
                        +|.++++..+..+.+....       ...+.++|....           +......  ...+...+.   +..+...+
T Consensus        59 --~I~~~~~~~~~~l~q~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~  127 (635)
T PRK11147         59 --RIIYEQDLIVARLQQDPPR-------NVEGTVYDFVAEGIEEQAEYLKRYHDISHL--VETDPSEKNLNELAKLQEQL  127 (635)
T ss_pred             --EEEeCCCCEEEEeccCCCC-------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHH--hccCchHHHHHHHHHHHHHH
Confidence              8888764444443321100       001111111000           0000000  000000000   00000000


Q ss_pred             cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HH
Q psy16304        298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQ  374 (537)
Q Consensus       298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~  374 (537)
                      .....+....+....+..+|+..   ...+.+|||||++|+    +++++++. +  |++++||  |+|++.....| ..
T Consensus       128 ~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgGekqRv----~LAraL~~-~--P~lLLLDEPt~~LD~~~~~~L~~  197 (635)
T PRK11147        128 DHHNLWQLENRINEVLAQLGLDP---DAALSSLSGGWLRKA----ALGRALVS-N--PDVLLLDEPTNHLDIETIEWLEG  197 (635)
T ss_pred             HhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCCccCHHHHHHHHH
Confidence            00111111122334455677752   455899999999999    99999996 5  8999999  99997666655 67


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      +++...++||++ +||+.+.+.++  ++.+++|+++.+.++.
T Consensus       198 ~L~~~~~tvliv-sHd~~~l~~~~d~i~~L~~G~i~~~~g~~  238 (635)
T PRK11147        198 FLKTFQGSIIFI-SHDRSFIRNMATRIVDLDRGKLVSYPGNY  238 (635)
T ss_pred             HHHhCCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEEecCCH
Confidence            776666778888 89999988754  8889999998776665

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=1.9e-21  Score=201.73  Aligned_cols=220  Identities=10%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc----Cc
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----PT  227 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----Pt  227 (537)
                      ++.++++.+.|+...-              ...+..+++|.+.+|+++||||+||||||||+++|+|.    +.    |+
T Consensus         3 ~L~v~~l~~~~~~~~~--------------~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl----l~~~~~~~   64 (326)
T PRK11022          3 LLNVDKLSVHFGDESA--------------PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL----IDYPGRVM   64 (326)
T ss_pred             eEEEeCeEEEECCCCc--------------cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCCCc
Confidence            4678888887754210              01245567788999999999999999999999999998    65    48


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC-
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-  304 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-  304 (537)
                      +|    +|.++| .++...+.   ...+......++++||++.  +.+.++..            .++.+.+....... 
T Consensus        65 ~G----~i~~~G-~~i~~~~~---~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~------------~~i~~~l~~~~~~~~  124 (326)
T PRK11022         65 AE----KLEFNG-QDLQRISE---KERRNLVGAEVAMIFQDPMTSLNPCYTVG------------FQIMEAIKVHQGGNK  124 (326)
T ss_pred             ce----EEEECC-EECCcCCH---HHHHHHhCCCEEEEecCchhhcCCcCCHH------------HHHHHHHHHhcCCCH
Confidence            89    899987 44322111   1222223346899999974  22222110            00111111000000 


Q ss_pred             --ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 --LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 --~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                        ...++...+..+|+...  .....+.+|||||+||+    +++++++. +  |+++++|  |++++..     ..++.
T Consensus       125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~il~lL~  197 (326)
T PRK11022        125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV----MIAMAIAC-R--PKLLIADEPTTALDVTIQAQIIELLL  197 (326)
T ss_pred             HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence              01122334456677531  12455899999999999    99999996 5  8999999  9999322     23334


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccchh
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.++.+.+++++ +||....... + +++|..|+++..+...++.
T Consensus       198 ~l~~~~g~til~i-THdl~~~~~~adri~vm~~G~ive~g~~~~~~  242 (326)
T PRK11022        198 ELQQKENMALVLI-THDLALVAEAAHKIIVMYAGQVVETGKAHDIF  242 (326)
T ss_pred             HHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            4444445567777 8998877543 3 9999999999998877764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.4e-21  Score=203.15  Aligned_cols=224  Identities=15%  Similarity=0.106  Sum_probs=141.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   + .          ..+..+++|.+.+|+++||+|+||||||||+++|+|.......|++|  
T Consensus         3 ~L~v~~l~~~y~~~~---~-~----------~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G--   66 (330)
T PRK15093          3 LLDIRNLTIEFKTSD---G-W----------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD--   66 (330)
T ss_pred             eEEEeeeEEEEeCCC---C-C----------EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce--
Confidence            467788888774321   0 0          12345677889999999999999999999999999982111136889  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC--CCCccceeeEEeecCcccccCCcccccc--c-C----c
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG--RPDSRTCQVYLIMCGVHQVSGIPDELTS--A-T----H  302 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l--~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~-~----~  302 (537)
                        +|.++| .++..++.   ...+......++++||++..  .+..+.     .       +++.+.+..  . .    .
T Consensus        67 --~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~Q~~~~~l~p~~tv-----~-------~~l~~~~~~~~~~~~~~~~  128 (330)
T PRK15093         67 --RMRFDD-IDLLRLSP---RERRKLVGHNVSMIFQEPQSCLDPSERV-----G-------RQLMQNIPGWTYKGRWWQR  128 (330)
T ss_pred             --EEEECC-EECCcCCH---HHHHHHhCCCEEEEecCcchhcCccccH-----H-------HHHHHHHHhhhcccccccc
Confidence              999887 44322211   22222333579999999752  111111     0       000000000  0 0    0


Q ss_pred             C-CccccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHH
Q psy16304        303 L-PLVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIW  372 (537)
Q Consensus       303 l-~~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~  372 (537)
                      . ....+....+..+|+....  ..+.+.+|||||+||+    +++++++. +  |+++++|  |++++.     +..++
T Consensus       129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL  201 (330)
T PRK15093        129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKV----MIAIALAN-Q--PRLLIADEPTNAMEPTTQAQIFRLL  201 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            0 0011223345567776421  2455899999999999    99999996 5  8999999  999932     22333


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .++.++.+.+++++ +||.......+  +++|++|+++..|...++.
T Consensus       202 ~~l~~~~g~tii~i-tHdl~~v~~~~dri~vm~~G~ive~g~~~~i~  247 (330)
T PRK15093        202 TRLNQNNNTTILLI-SHDLQMLSQWADKINVLYCGQTVETAPSKELV  247 (330)
T ss_pred             HHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            44444445677777 89988886544  9999999999988877763

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.82  E-value=2.8e-21  Score=190.63  Aligned_cols=193  Identities=14%  Similarity=0.099  Sum_probs=125.3

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+...+.      ....+..+++++
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~   81 (232)
T cd03218          17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL----VKPDSG----KILLDG-QDITKLPM------HKRARLGIGYLP   81 (232)
T ss_pred             ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EecccCCH------hHHHhccEEEec
Confidence            345677889999999999999999999999999    999999    898887 43321111      111235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCc--CCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.+++..+.     .+       ++.........  ..........+..+|+.... ...+..||+||+||+    ++
T Consensus        82 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~l  144 (232)
T cd03218          82 QEASIFRKLTV-----EE-------NILAVLEIRGLSKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRV----EI  144 (232)
T ss_pred             CCccccccCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence            98775544222     00       00000000000  00001112234456766544 344889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |+++++|  |+|++..  ..   ++..+.+. +.+++++ +|+.......+  ++++++|+++..+..++
T Consensus       145 a~al~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  219 (232)
T cd03218         145 ARALAT-N--PKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLIT-DHNVRETLSITDRAYIIYEGKVLAEGTPEE  219 (232)
T ss_pred             HHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence            999997 5  8999999  9999332  22   23343332 4466666 88887666543  88999999987776555


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       220 ~  220 (232)
T cd03218         220 I  220 (232)
T ss_pred             h
Confidence            4

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.82  E-value=3.1e-21  Score=192.51  Aligned_cols=216  Identities=16%  Similarity=0.120  Sum_probs=137.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+....                  ..++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|  
T Consensus         3 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G--   58 (250)
T PRK11264          3 AIEVKNLVKKFHGQTV------------------LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL----EQPEAG--   58 (250)
T ss_pred             cEEEeceEEEECCeee------------------eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe--
Confidence            4667788887654222                  2345677889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEeecCCC-chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGS-EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~-~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~  307 (537)
                        +|.++| ..+...+.... ......++..+++++|++.+++..+.     .+       ++...........   ...
T Consensus        59 --~i~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~  123 (250)
T PRK11264         59 --TIRVGD-ITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTV-----LE-------NIIEGPVIVKGEPKEEATA  123 (250)
T ss_pred             --EEEECC-EEccccccccchhhHHHHhhhhEEEEecCcccCCCCCH-----HH-------HHHHHHHHhcCCCHHHHHH
Confidence              898887 55432211000 00012234678999999775543222     00       0000000000000   001


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~  380 (537)
                      .....+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  ..   .++.+.+. +
T Consensus       124 ~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~  194 (250)
T PRK11264        124 RARELLAKVGLAGKE-TSYPRRLSGGQQQRV----AIARALAM-R--PEVILFDEPTSALDPELVGEVLNTIRQLAQE-K  194 (250)
T ss_pred             HHHHHHHHcCCcchh-hCChhhCChHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-C
Confidence            112233455665443 445899999999999    99999996 5  8999999  9999333  22   22333333 4


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +|+.......+  ++++++|+++..+..+++
T Consensus       195 ~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        195 RTMVIV-THEMSFARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             CEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            566666 88888776533  899999999887766655

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.81  E-value=2.9e-21  Score=203.38  Aligned_cols=200  Identities=15%  Similarity=0.124  Sum_probs=136.4

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcE---EEEEeecCCCchhhHHHHhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY---EVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~---~i~~~D~~G~~~~r~~~~~~  261 (537)
                      ...+++|.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++|..   ++...+.   ...+...+..
T Consensus        39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl----~~p~~G----~I~idG~~~~~~i~~~~~---~~l~~~r~~~  107 (382)
T TIGR03415        39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL----NPVSRG----SVLVKDGDGSIDVANCDA---ATLRRLRTHR  107 (382)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECCEecccccccCCH---HHHHHHhcCC
Confidence            45567888999999999999999999999999999    999999    99998721   1211111   1222223357


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      ++++||++.+++..+.            .+++...+. ...+.   ...+....+..+|+.+.. ...+.+|||||+||+
T Consensus       108 i~~vfQ~~~l~p~~Tv------------~eNi~~~~~-~~g~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV  173 (382)
T TIGR03415       108 VSMVFQKFALMPWLTV------------EENVAFGLE-MQGMPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRV  173 (382)
T ss_pred             EEEEECCCcCCCCCcH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH
Confidence            9999999987765433            111110000 00110   011223445577887654 555899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                          +++++++. +  |+++++|  |++++..  ..+++   .+.++.+.+++++ +||..+....+  +++|++|+++.
T Consensus       174 ----~LARALa~-~--P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i-THdl~e~~~l~DrI~vl~~G~iv~  245 (382)
T TIGR03415       174 ----GLARAFAM-D--ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV-SHDLDEALKIGNRIAIMEGGRIIQ  245 (382)
T ss_pred             ----HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence                99999996 5  8999999  9999322  22333   3333334567777 89988765533  99999999999


Q ss_pred             Eecccchh
Q psy16304        410 LISAKNLS  417 (537)
Q Consensus       410 ~g~nkdl~  417 (537)
                      .|+++++.
T Consensus       246 ~g~~~ei~  253 (382)
T TIGR03415       246 HGTPEEIV  253 (382)
T ss_pred             ecCHHHHh
Confidence            99887764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0056|consensus

Probab=99.81  E-value=1.5e-21  Score=202.61  Aligned_cols=260  Identities=14%  Similarity=0.113  Sum_probs=170.7

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      +.|+-=.+.....||.++.-++++++++..++.+.|.+  ||+..          .+.-+.++|+..       .++|..
T Consensus       489 y~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~----------~~G~i~fsnvtF-------~Y~p~k  551 (790)
T KOG0056|consen  489 YMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKV----------TQGKIEFSNVTF-------AYDPGK  551 (790)
T ss_pred             hCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccc----------cCCeEEEEEeEE-------ecCCCC
Confidence            34555555555556778888999999999887777655  44433          233444444444       456552


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                      +          .-.+++|++.+|..++||||+|+||||++++|.+.    ++.++|    .|.++| .++..+.+     
T Consensus       552 ~----------vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf----fdv~sG----sI~iDg-qdIrnvt~-----  607 (790)
T KOG0056|consen  552 P----------VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF----FDVNSG----SITIDG-QDIRNVTQ-----  607 (790)
T ss_pred             c----------eeecceEEecCCcEEEEECCCCCchhHHHHHHHHH----hhccCc----eEEEcC-chHHHHHH-----
Confidence            2          23456788999999999999999999999999999    999999    999997 55544433     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIK  328 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~  328 (537)
                        ...+..+|.|||+..+|.+ ...++-+.-. ++.++........   +.+-..+....     ..+|..+.       
T Consensus       608 --~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~-----t~VGERGL-------  673 (790)
T KOG0056|consen  608 --SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN-----TRVGERGL-------  673 (790)
T ss_pred             --HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh-----hhhhhccc-------
Confidence              3445889999999998854 2222222111 2222211111100   11111111111     14454443       


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLM  402 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll  402 (537)
                      .||||++|||    ++|++++. +  |.+++||  |+.++  ..+.+...+.+-+ +-+-+|+ .|...+....+ +.++
T Consensus       674 kLSGGEKQRV----AiARtiLK-~--P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTivnAD~ILvi  745 (790)
T KOG0056|consen  674 KLSGGEKQRV----AIARTILK-A--PSIILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTIVNADLILVI  745 (790)
T ss_pred             ccCCcchhhH----HHHHHHhc-C--CcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehheecccEEEEE
Confidence            3999999999    99999995 4  8999999  88883  2333333443322 2345555 68888888777 9999


Q ss_pred             cCCcEEEEecccchhh
Q psy16304        403 SCNCQVYLISAKNLSN  418 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~~  418 (537)
                      ++|+|+.-|.++++..
T Consensus       746 ~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  746 SNGRIVERGRHEELLK  761 (790)
T ss_pred             eCCeEeecCcHHHHHh
Confidence            9999999999998854

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.1e-21  Score=195.17  Aligned_cols=193  Identities=16%  Similarity=0.104  Sum_probs=123.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| .++...+.    . ...++..+++++|
T Consensus        19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~----~-~~~~~~~i~~v~q   84 (271)
T PRK13638         19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL----LRPQKG----AVLWQG-KPLDYSKR----G-LLALRQQVATVFQ   84 (271)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCcc----EEEECC-EEcccccC----C-HHHHHhheEEEee
Confidence            35677889999999999999999999999999    999999    899887 44421111    1 1123367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++..+.....    +.+       ++...+... ...   ........+..+|+.+.. ...+.+|||||+||+    ++
T Consensus        85 ~~~~~~~~~~----~~~-------~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~l  147 (271)
T PRK13638         85 DPEQQIFYTD----IDS-------DIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRV----AI  147 (271)
T ss_pred             Chhhcccccc----HHH-------HHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHH----HH
Confidence            8642111000    000       000000000 000   000112233355665443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |++++||  |+|++...     .++..+.+. +.+++++ +|+....... + ++++++|+++..+.+.+
T Consensus       148 araL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  222 (271)
T PRK13638        148 AGALVL-Q--ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGE  222 (271)
T ss_pred             HHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999996 5  8999999  99994332     233343333 3466666 7888877543 3 88999999998887665


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       223 ~  223 (271)
T PRK13638        223 V  223 (271)
T ss_pred             H
Confidence            5

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.81  E-value=2.4e-21  Score=189.34  Aligned_cols=185  Identities=18%  Similarity=0.111  Sum_probs=121.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| ..+..  .      ...++..+++++
T Consensus        22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~--~------~~~~~~~i~~~~   84 (218)
T cd03266          22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL----LEPDAG----FATVDG-FDVVK--E------PAEARRRLGFVS   84 (218)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEEECC-EEccc--C------HHHHHhhEEEec
Confidence            345677889999999999999999999999999    999999    899887 44421  0      112346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+..            +++......  ........+....+..+|+.... ...+.+|||||+||+    ++
T Consensus        85 q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  147 (218)
T cd03266          85 DSTGLYDRLTAR------------ENLEYFAGLYGLKGDELTARLEELADRLGMEELL-DRRVGGFSTGMRQKV----AI  147 (218)
T ss_pred             CCcccCcCCCHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hhhhhhcCHHHHHHH----HH
Confidence            998765543320            000000000  00000011122334456765443 445899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++..     ...+..+.+. +.+++++ +|+.......+  ++++++|+++..
T Consensus       148 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-tH~~~~~~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         148 ARALVH-D--PPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFS-THIMQEVERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             HHHHhc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhcCEEEEEECCEEeec
Confidence            999996 5  8999999  9999333     2233344332 4566666 88887766533  888899987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.81  E-value=2e-21  Score=189.73  Aligned_cols=186  Identities=18%  Similarity=0.211  Sum_probs=120.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++..++.   .. ...+++.+++++
T Consensus        20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~-~~~~~~~i~~~~   86 (216)
T TIGR00960        20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI----EKPTRG----KIRFNG-QDLTRLRG---RE-IPFLRRHIGMVF   86 (216)
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EehhhcCh---hH-HHHHHHhceEEe
Confidence            345677889999999999999999999999999    999999    899887 44322211   11 112346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+..     +       ++......  ........+....+..+|+.... ...+.+|||||+||+    ++
T Consensus        87 q~~~~~~~~tv~-----e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~l  149 (216)
T TIGR00960        87 QDHRLLSDRTVY-----D-------NVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-HALPMQLSGGEQQRV----AI  149 (216)
T ss_pred             cCccccccccHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence            998755433220     0       00000000  00000011122334456766543 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ  407 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i  407 (537)
                      +++++. +  |+++++|  |+|++..  ..++   ..+.+. +.+++++ +|+.+..... + ++++++|++
T Consensus       150 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~v-sH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       150 ARAIVH-K--PPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVA-THDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence            999996 5  8999999  9999433  2222   333222 4567777 8998877654 3 778887763

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.81  E-value=2.5e-21  Score=189.66  Aligned_cols=192  Identities=16%  Similarity=0.148  Sum_probs=121.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+...+.      ....+..+++++
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~   81 (222)
T cd03224          17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL----LPPRSG----SIRFDG-RDITGLPP------HERARAGIGYVP   81 (222)
T ss_pred             eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcCCCCH------HHHHhcCeEEec
Confidence            345677889999999999999999999999999    999999    899887 43321111      112235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe-ccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++.+++.++..     +       ++...................+..+ ++... ....+.+|||||+||+    +++
T Consensus        82 q~~~~~~~~t~~-----~-------~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv----~la  144 (222)
T cd03224          82 EGRRIFPELTVE-----E-------NLLLGAYARRRAKRKARLERVYELFPRLKER-RKQLAGTLSGGEQQML----AIA  144 (222)
T ss_pred             cccccCCCCcHH-----H-------HHHHHhhhcCchhHHHHHHHHHHHHHhhhhh-hhCchhhCCHHHHHHH----HHH
Confidence            998765543221     0       0000000000000000011112223 23322 2445889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      ++++. +  |+++++|  |+|++..  ..++   ..+.+ .+.+++++ +|+.......+  ++++++|+++..+...+
T Consensus       145 ral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (222)
T cd03224         145 RALMS-R--PKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLV-EQNARFALEIADRAYVLERGRVVLEGTAAE  218 (222)
T ss_pred             HHHhc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence            99996 5  8999999  9999332  2233   33333 34566666 88888765533  88899999887665443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.81  E-value=2.1e-21  Score=190.44  Aligned_cols=186  Identities=17%  Similarity=0.162  Sum_probs=120.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| .++..++.   .. ...++..+++++|
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~---~~-~~~~~~~i~~~~q   86 (222)
T PRK10908         20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI----ERPSAG----KIWFSG-HDITRLKN---RE-VPFLRRQIGMIFQ   86 (222)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccCCh---hH-HHHHHhheEEEec
Confidence            45677889999999999999999999999999    999999    899887 44432211   11 1123467999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.++...+..     +       ++..... ......   .......+..+|+.+.. .+.+.+||+||+||+    ++
T Consensus        87 ~~~~~~~~tv~-----~-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  148 (222)
T PRK10908         87 DHHLLMDRTVY-----D-------NVAIPLI-IAGASGDDIRRRVSAALDKVGLLDKA-KNFPIQLSGGEQQRV----GI  148 (222)
T ss_pred             CccccccccHH-----H-------HHHhHHH-hcCCCHHHHHHHHHHHHHHcCChhhh-hCCchhCCHHHHHHH----HH
Confidence            97754432220     0       0000000 000000   00112233455665432 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                      +++++. +  |+++++|  |+|++..  ..+   +..+.+. +.+++++ +|+.......+  ++++++|+++.
T Consensus       149 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        149 ARAVVN-K--PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMA-THDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEcc
Confidence            999996 5  8999999  9999332  223   3444333 4567777 89988877643  88889998754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.81  E-value=2.6e-21  Score=192.30  Aligned_cols=192  Identities=17%  Similarity=0.171  Sum_probs=125.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+..++.       ...+..+++++|
T Consensus        19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q   82 (242)
T cd03295          19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL----IEPTSG----EIFIDG-EDIREQDP-------VELRRKIGYVIQ   82 (242)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-eEcCcCCh-------HHhhcceEEEcc
Confidence            45677889999999999999999999999999    999999    898887 44322111       122357899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc-cCccchhhhhcCCCceeeecccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++.+++..+.            .+++.... ......   ........+..+|+.. ......+.+|||||+||+    +
T Consensus        83 ~~~~~~~~tv------------~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv----~  145 (242)
T cd03295          83 QIGLFPHMTV------------EENIALVP-KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV----G  145 (242)
T ss_pred             CccccCCCcH------------HHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH----H
Confidence            9775543222            00010000 000000   0111223344566663 112455889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |+++++|  |+|++...  .   .+..+.+..+.+++++ +|+.......+  ++++++|+++..+..+
T Consensus       146 laral~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         146 VARALAA-D--PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV-THDIDEAFRLADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            9999996 5  8999999  99994332  2   2233333324566666 88887665433  8899999998776655


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      ++
T Consensus       222 ~~  223 (242)
T cd03295         222 EI  223 (242)
T ss_pred             HH
Confidence            54

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.81  E-value=2.4e-21  Score=194.41  Aligned_cols=219  Identities=14%  Similarity=0.080  Sum_probs=139.1

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +..+.++++.+.|++...                  ..++++.+.+|++++|+|+||||||||+++|+|.    +.|++|
T Consensus         3 ~~~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G   60 (257)
T PRK10619          3 ENKLNVIDLHKRYGEHEV------------------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL----EKPSEG   60 (257)
T ss_pred             CccEEEeeeEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe
Confidence            445677888887653221                  2345677889999999999999999999999999    899999


Q ss_pred             eeeEEEEECCcEEEEEeec-CC----Cc-hhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcc-cccccC-
Q psy16304        230 FNRARVEYGNKYEVFLYDL-GG----SE-DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSAT-  301 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~-~G----~~-~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~-  301 (537)
                          ++.++| ..+..... .+    .. .....++..+++++|++.+++..+..            +++.. ...... 
T Consensus        61 ----~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~------------enl~~~~~~~~~~  123 (257)
T PRK10619         61 ----SIVVNG-QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL------------ENVMEAPIQVLGL  123 (257)
T ss_pred             ----EEEECC-EEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHH------------HHHHHHHHHhCCC
Confidence                999887 44422100 00    00 01123346799999998755432220            00000 000000 


Q ss_pred             -cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304        302 -HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK  373 (537)
Q Consensus       302 -~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~  373 (537)
                       ......+....+..+|+........+.+|||||+||+    +++++++. +  |+++++|  |+|++...     ..+.
T Consensus       124 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~  196 (257)
T PRK10619        124 SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV----SIARALAM-E--PEVLLFDEPTSALDPELVGEVLRIMQ  196 (257)
T ss_pred             CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             0000011223344567765432445789999999999    99999996 5  8999999  99993332     2223


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+ .+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus       197 ~l~~-~g~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (257)
T PRK10619        197 QLAE-EGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGAPEQL  239 (257)
T ss_pred             HHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            3332 24566666 8998887754 3 889999999887766555

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3.1e-21  Score=191.83  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| .++...+.       ..++..+++++|
T Consensus        21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~-------~~~~~~i~~~~q   84 (241)
T PRK14250         21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL----IDPTEG----SILIDG-VDIKTIDV-------IDLRRKIGMVFQ   84 (241)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEhhhcCh-------HHhhhcEEEEec
Confidence            45677889999999999999999999999999    899999    999887 44321111       122357899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++.. +.     .+       ++.... ..... ...+....+..+|+........+.+|||||+||+    +++++
T Consensus        85 ~~~~~~~-tv-----~e-------~l~~~~-~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl----~la~a  145 (241)
T PRK14250         85 QPHLFEG-TV-----KD-------NIEYGP-MLKGE-KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV----SIART  145 (241)
T ss_pred             Cchhchh-hH-----HH-------HHhcch-hhcCc-HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH----HHHHH
Confidence            9765431 11     00       000000 00000 0011122333566642112345889999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++. +  |+++++|  |+|++....     .+..+.+..+.+++++ +|+....... + ++++++|+++..+.++++
T Consensus       146 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (241)
T PRK14250        146 LAN-N--PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI-THNMEQAKRIGDYTAFLNKGILVEYAKTYDF  219 (241)
T ss_pred             Hhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            996 5  8999999  999943322     2233333224566666 8888876653 3 899999999888877765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.81  E-value=2.4e-21  Score=201.14  Aligned_cols=221  Identities=11%  Similarity=0.093  Sum_probs=142.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---  227 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---  227 (537)
                      .++.++++.+.|+...   +           ...+..+++|.+.+|+++||+|+||||||||+++|+|.    ..|+   
T Consensus        11 ~~L~i~~l~~~~~~~~---~-----------~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl----~~p~~~~   72 (330)
T PRK09473         11 ALLDVKDLRVTFSTPD---G-----------DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL----LAANGRI   72 (330)
T ss_pred             ceEEEeCeEEEEecCC---C-----------CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCCC
Confidence            4567888888775321   0           02245567888999999999999999999999999999    7775   


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC-
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-  304 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-  304 (537)
                      +|    +|.++| .++..++.   ...+......++++||++.  +.+.++..            +++.+.+....... 
T Consensus        73 sG----~I~~~G-~~i~~~~~---~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~------------~~i~~~~~~~~~~~~  132 (330)
T PRK09473         73 GG----SATFNG-REILNLPE---KELNKLRAEQISMIFQDPMTSLNPYMRVG------------EQLMEVLMLHKGMSK  132 (330)
T ss_pred             Ce----EEEECC-EECCcCCH---HHHHHHhcCCEEEEEcCchhhcCCCCCHH------------HHHHHHHHHhcCCCH
Confidence            89    999987 54432221   2222222347999999973  32222210            00111010000010 


Q ss_pred             --ccccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 --LVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 --~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                        ...+....+..+|+.+..  ....+.+|||||+||+    ++|++++. +  |+++++|  |++++..     ..++.
T Consensus       133 ~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv----~IArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL~  205 (330)
T PRK09473        133 AEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV----MIAMALLC-R--PKLLIADEPTTALDVTVQAQIMTLLN  205 (330)
T ss_pred             HHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence              001122234456665321  1345889999999999    99999996 5  8999999  9999332     22334


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccchh
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.++.+.+++++ +||....... + +++|.+|+++..|..+++.
T Consensus       206 ~l~~~~g~til~i-THdl~~~~~~~Dri~vm~~G~ive~g~~~~i~  250 (330)
T PRK09473        206 ELKREFNTAIIMI-THDLGVVAGICDKVLVMYAGRTMEYGNARDVF  250 (330)
T ss_pred             HHHHHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            5544445667777 8998877643 3 9999999999998877764

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.81  E-value=3.3e-21  Score=193.60  Aligned_cols=193  Identities=13%  Similarity=0.054  Sum_probs=125.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+..++.       ..+...+++++|
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~p~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q   83 (258)
T PRK13548         20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGE----LSPDSG----EVRLNG-RPLADWSP-------AELARRRAVLPQ   83 (258)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EEcccCCH-------HHhhhheEEEcc
Confidence            35677889999999999999999999999999    899999    999887 44322111       112356899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccC-cC-CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HL-PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l-~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+.     .|       ++........ .. .........+..+|+.... ...+.+|||||+||+    +++
T Consensus        84 ~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGe~qrv----~la  146 (258)
T PRK13548         84 HSSLSFPFTV-----EE-------VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-GRDYPQLSGGEQQRV----QLA  146 (258)
T ss_pred             CCcCCCCCCH-----HH-------HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHH----HHH
Confidence            8765433221     11       0000000000 00 0001122334456765443 445899999999999    999


Q ss_pred             cceec-----cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304        346 RARVE-----YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI  411 (537)
Q Consensus       346 ~all~-----~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g  411 (537)
                      ++++.     .+  |+++++|  |+|++..     ..++..+.+..+.+++++ +|+.......+  ++++++|+++..+
T Consensus       147 ~al~~~~~~~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~  223 (258)
T PRK13548        147 RVLAQLWEPDGP--PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV-LHDLNLAARYADRIVLLHQGRLVADG  223 (258)
T ss_pred             HHHhcccccCCC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhcCEEEEEECCEEEeeC
Confidence            99994     24  8999999  9999333     233344442334566666 88988776433  8899999998776


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      ...++
T Consensus       224 ~~~~~  228 (258)
T PRK13548        224 TPAEV  228 (258)
T ss_pred             CHHHH
Confidence            65554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.7e-21  Score=192.96  Aligned_cols=211  Identities=13%  Similarity=0.115  Sum_probs=132.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+....                  -..+++.+.+|++++|+|+||||||||+++|+|.    ..|+.| 
T Consensus         4 ~~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G-   60 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQA------------------LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD----PRATSG-   60 (237)
T ss_pred             cEEEEEeEEEeeCCcee------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc-
Confidence            45677888887653222                  2234677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                         ++.++| ..+..++      .....+..+++++|+..++...+.     .+       ++.................
T Consensus        61 ---~i~~~g-~~~~~~~------~~~~~~~~i~~~~q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~  118 (237)
T PRK11614         61 ---RIVFDG-KDITDWQ------TAKIMREAVAIVPEGRRVFSRMTV-----EE-------NLAMGGFFAERDQFQERIK  118 (237)
T ss_pred             ---eEEECC-EecCCCC------HHHHHHhCEEEeccCcccCCCCcH-----HH-------HHHHhhhccChhHHHHHHH
Confidence               888887 4332111      111234678999998775543222     00       0000000000000000011


Q ss_pred             ccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEE
Q psy16304        311 VPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQT  382 (537)
Q Consensus       311 ~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~v  382 (537)
                      ..+..+ ++.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  .   ..+..+.+. +.+
T Consensus       119 ~~l~~~~~l~~~~-~~~~~~LS~G~~qrl----~la~al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~t  189 (237)
T PRK11614        119 WVYELFPRLHERR-IQRAGTMSGGEQQML----AIGRALMS-Q--PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMT  189 (237)
T ss_pred             HHHHHHHHHHHHH-hCchhhCCHHHHHHH----HHHHHHHh-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCE
Confidence            111223 233222 234789999999999    99999996 5  8999999  9999332  2   223333333 456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++ +|+.......+  ++++++|+++..+..+++
T Consensus       190 iii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (237)
T PRK11614        190 IFLV-EQNANQALKLADRGYVLENGHVVLEDTGDAL  224 (237)
T ss_pred             EEEE-eCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence            6666 88887665433  899999999988877666

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.81  E-value=2.6e-21  Score=188.60  Aligned_cols=184  Identities=18%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| .++..++.   .. ...++..+++++|
T Consensus        20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~-~~~~~~~i~~~~q   86 (214)
T TIGR02673        20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA----LTPSRG----QVRIAG-EDVNRLRG---RQ-LPLLRRRIGVVFQ   86 (214)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcccCCH---HH-HHHHHhheEEEec
Confidence            45677889999999999999999999999999    899999    888887 44422111   01 1123467899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+.     .+       ++......  .............+..+|+.... ...+.+|||||+||+    +++
T Consensus        87 ~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la  149 (214)
T TIGR02673        87 DFRLLPDRTV-----YE-------NVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-DAFPEQLSGGEQQRV----AIA  149 (214)
T ss_pred             ChhhccCCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HHH
Confidence            9775543222     00       00000000  00000001112234456665433 445789999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~  406 (537)
                      ++++. +  |++++||  |+|++..     ...++.+.+. +.+++++ +|+..+....+  ++++++|+
T Consensus       150 ~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       150 RAIVN-S--PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVA-THDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHhC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhcCEEEEecCCC
Confidence            99996 5  8999999  9999433     2223343333 4566666 88888776543  77777664

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.81  E-value=2.8e-21  Score=194.81  Aligned_cols=199  Identities=18%  Similarity=0.186  Sum_probs=128.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| ..+..++.   .. ...++..++++
T Consensus        27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~-~~~~~~~i~~v   93 (265)
T TIGR02769        27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL----EKPAQG----TVSFRG-QDLYQLDR---KQ-RRAFRRDVQLV   93 (265)
T ss_pred             eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEccccCH---HH-HHHHhhceEEE
Confidence            3456788889999999999999999999999999    999999    999887 44322111   11 11234679999


Q ss_pred             ccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      +|++.  +.+..+.     .+       ++...+.....+.   ...+....+..+|+........+..|||||+||+  
T Consensus        94 ~q~~~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv--  159 (265)
T TIGR02769        94 FQDSPSAVNPRMTV-----RQ-------IIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI--  159 (265)
T ss_pred             ecChhhhcCCCCCH-----HH-------HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH--
Confidence            99863  2221111     00       0000000000000   0111222344566642222445889999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEe
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLI  411 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g  411 (537)
                        +++++++. +  |+++++|  |++++..     ...+..+.+..+.+++++ +|+....... + ++++++|+++..+
T Consensus       160 --~laral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g  233 (265)
T TIGR02769       160 --NIARALAV-K--PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFI-THDLRLVQSFCQRVAVMDKGQIVEEC  233 (265)
T ss_pred             --HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence              99999997 5  8999999  9999432     333344444334567777 8998877643 3 8889999999888


Q ss_pred             cccchh
Q psy16304        412 SAKNLS  417 (537)
Q Consensus       412 ~nkdl~  417 (537)
                      ..+++.
T Consensus       234 ~~~~~~  239 (265)
T TIGR02769       234 DVAQLL  239 (265)
T ss_pred             CHHHHc
Confidence            777663

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>KOG0055|consensus

Probab=99.81  E-value=4.9e-21  Score=219.19  Aligned_cols=265  Identities=14%  Similarity=0.089  Sum_probs=183.5

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF  175 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~  175 (537)
                      .+.+.......-.+..+..+..+++.+++.++.++.+. +-.+     ..... .--+.++++...|+++.     .   
T Consensus       938 a~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-~~~~-----~~~~~-~G~I~~~~V~F~YPsRP-----~--- 1002 (1228)
T KOG0055|consen  938 AMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-TSGG-----KLPNV-KGDIEFRNVSFAYPTRP-----D--- 1002 (1228)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCC-----ccccc-eeEEEEeeeEeeCCCCC-----C---
Confidence            34556666667777788888889999999777554332 2221     00001 22466777887776542     2   


Q ss_pred             hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhh
Q psy16304        176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR  255 (537)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r  255 (537)
                             +.+-+++++.+.+|+.++||||+|+||||.+.+|-+.    |.|+.|    .|.+|| .++..+++       
T Consensus      1003 -------~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf----Ydp~~G----~V~IDg-~dik~lnl------- 1059 (1228)
T KOG0055|consen 1003 -------VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF----YDPDAG----KVKIDG-VDIKDLNL------- 1059 (1228)
T ss_pred             -------chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCC----eEEECC-cccccCCH-------
Confidence                   2234566788889999999999999999999999999    999999    999997 77777766       


Q ss_pred             HHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEeccCccCccchhhhh
Q psy16304        256 TIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRI  330 (537)
Q Consensus       256 ~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~L  330 (537)
                      ..+++.++.|.|+|.||.. ..+++.+..+ .+.++..+.   ....+++..++...+.     .+|..+       .+|
T Consensus      1060 ~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT-----~vGerG-------~QL 1127 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT-----RVGERG-------VQL 1127 (1228)
T ss_pred             HHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC-----ccCccc-------CcC
Confidence            3344899999999999876 5555555522 122111111   1111223333332222     344333       359


Q ss_pred             cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH--HHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304        331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW--KQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSC  404 (537)
Q Consensus       331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~--~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~  404 (537)
                      ||||+||+    ++|||++. +  |++|+||  |+.++...+..  +.+-+.. +-+.+|+ .|...+...++ +.++++
T Consensus      1128 SGGQKQRI----AIARAilR-n--PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvI-AHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1128 SGGQKQRI----AIARAILR-N--PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVI-AHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred             CchHHHHH----HHHHHHHc-C--CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEE-ecchhhhhcCCEEEEEEC
Confidence            99999999    99999995 4  9999999  99996555433  3333322 3467777 89999998888 999999


Q ss_pred             CcEEEEecccchhh
Q psy16304        405 NCQVYLISAKNLSN  418 (537)
Q Consensus       405 G~ii~~g~nkdl~~  418 (537)
                      |+++..|++.+|.+
T Consensus      1200 G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1200 GKVVEQGTHDELLA 1213 (1228)
T ss_pred             CEEEecccHHHHHh
Confidence            99999999999865

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1e-20  Score=179.06  Aligned_cols=191  Identities=15%  Similarity=0.125  Sum_probs=127.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .++++..+||..+|+||||||||||++.|+|.    ..|++|    ++.++| ..+..|.-   .+    ..+..+.++|
T Consensus        19 ~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe----l~p~~G----~v~~~g-~~l~~~~~---~~----lA~~raVlpQ   82 (259)
T COG4559          19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGE----LSPDSG----EVTLNG-VPLNSWPP---EE----LARHRAVLPQ   82 (259)
T ss_pred             CcceeccCCcEEEEECCCCccHHHHHHHhhCc----cCCCCC----eEeeCC-cChhhCCH---HH----HHHHhhhccc
Confidence            45677889999999999999999999999999    999999    999887 55555543   12    2255678888


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---------cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---------VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---------~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      +..+....+.     .+           .. .++....         ..-....+...++.+.. .+...+||||++||+
T Consensus        83 ~s~laFpFtv-----~e-----------VV-~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-~R~y~~LSGGEqQRV  144 (259)
T COG4559          83 NSSLAFPFTV-----QE-----------VV-QMGRIPHRSGREPEEDERIAAQALAATDLSGLA-GRDYRTLSGGEQQRV  144 (259)
T ss_pred             CcccccceEH-----HH-----------HH-HhcccccccCCCchhhHHHHHHHHHHcChhhhh-ccchhhcCchHHHHH
Confidence            8663211111     00           00 0111100         00011223344444443 333788999999999


Q ss_pred             ecccccccceeccCC---ceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhhhhhhcCCcEE
Q psy16304        339 VPTVGFNRARVEYGN---KYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQV  408 (537)
Q Consensus       339 s~ti~la~all~~~e---~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii  408 (537)
                          .+++.+.+.-.   .+..++||  |+.++     ......+++.+++.+++.|.|+.+.....+.++++|.+|+++
T Consensus       145 ----qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~  220 (259)
T COG4559         145 ----QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI  220 (259)
T ss_pred             ----HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence                98888876443   24589999  77773     334445788888766666665555555556669999999999


Q ss_pred             EEecccch
Q psy16304        409 YLISAKNL  416 (537)
Q Consensus       409 ~~g~nkdl  416 (537)
                      +.|++++.
T Consensus       221 a~g~p~~v  228 (259)
T COG4559         221 ASGSPQDV  228 (259)
T ss_pred             ecCCHHHh
Confidence            99999986

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.9e-21  Score=196.04  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=127.6

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ...+++.+.+|+++||+|+||||||||+++|+|.    ..|+.|    +|.++| ..+....    ... ...+..++++
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~----~~~-~~~~~~ig~v   88 (287)
T PRK13637         23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL----LKPTSG----KIIIDG-VDITDKK----VKL-SDIRKKVGLV   88 (287)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCcc----EEEECC-EECCCcC----ccH-HHHhhceEEE
Confidence            3456678889999999999999999999999999    999999    999887 4432110    001 1233679999


Q ss_pred             ccCCCCC-CCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccC--ccCccchhhhhcCCCceeeec
Q psy16304        266 SQTPLGR-PDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLD--NAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       266 ~Q~~~l~-~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~--~~gKs~li~~LSgG~rqrvs~  340 (537)
                      ||++... ...+.     .+       ++......  +.......+....+..+|+.  .. ....+.+|||||+||+  
T Consensus        89 ~q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~~LSgGq~qrv--  153 (287)
T PRK13637         89 FQYPEYQLFEETI-----EK-------DIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-KDKSPFELSGGQKRRV--  153 (287)
T ss_pred             ecCchhccccccH-----HH-------HHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-ccCCcccCCHHHHHHH--
Confidence            9986311 11111     01       00000000  00000011223345567775  32 3455899999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g  411 (537)
                        +++++++. +  |+++++|  |+|++..  ..+   +..+.++.+.+++++ +|+...... ++ ++++++|+++..+
T Consensus       154 --~iAraL~~-~--P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~drv~~l~~G~i~~~g  227 (287)
T PRK13637        154 --AIAGVVAM-E--PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV-SHSMEDVAKLADRIIVMNKGKCELQG  227 (287)
T ss_pred             --HHHHHHHc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEC
Confidence              99999996 5  8999999  9999332  222   334434334566776 888887654 33 8999999999988


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      .+.++
T Consensus       228 ~~~~~  232 (287)
T PRK13637        228 TPREV  232 (287)
T ss_pred             CHHHH
Confidence            87765

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3.7e-21  Score=191.03  Aligned_cols=210  Identities=13%  Similarity=0.116  Sum_probs=135.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++...                  ..++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|  
T Consensus         3 ~l~~~~l~~~~~~~~~------------------l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G--   58 (241)
T PRK10895          3 TLTAKNLAKAYKGRRV------------------VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI----VPRDAG--   58 (241)
T ss_pred             eEEEeCcEEEeCCEEE------------------EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            4667788877653221                  2345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        ++.++| ..+..     .. .....+..+++++|++.++...+..     +       ++...........   ....
T Consensus        59 --~i~~~g-~~~~~-----~~-~~~~~~~~i~~~~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~  117 (241)
T PRK10895         59 --NIIIDD-EDISL-----LP-LHARARRGIGYLPQEASIFRRLSVY-----D-------NLMAVLQIRDDLSAEQREDR  117 (241)
T ss_pred             --EEEECC-EECCC-----CC-HHHHHHhCeEEeccCCcccccCcHH-----H-------HHhhhhhcccccCHHHHHHH
Confidence              888887 43321     11 1122346799999998755432220     0       0000000000000   0011


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~  381 (537)
                      ....+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  ..++   ..+.+ .+.
T Consensus       118 ~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~  188 (241)
T PRK10895        118 ANELMEEFHIEHLR-DSMGQSLSGGERRRV----EIARALAA-N--PKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL  188 (241)
T ss_pred             HHHHHHHcCCHHHh-hcchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC
Confidence            22234455665543 344889999999999    99999996 5  8999999  9999432  2222   33333 244


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +|+.......+  ++++++|+++..+.++++
T Consensus       189 tiii~-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        189 GVLIT-DHNVRETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             EEEEE-EcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            66666 78887665543  888999999887766655

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.81  E-value=3.1e-21  Score=187.89  Aligned_cols=185  Identities=18%  Similarity=0.123  Sum_probs=120.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++...+     ..    +..+++++
T Consensus        17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~v~~~g-~~~~~~~-----~~----~~~i~~~~   78 (213)
T cd03301          17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL----EEPTSG----RIYIGG-RDVTDLP-----PK----DRDIAMVF   78 (213)
T ss_pred             eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcCC-----cc----cceEEEEe
Confidence            345677889999999999999999999999999    999999    898887 4432111     11    14689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+..     +       ++......  .............+..+|+.... ...+.+|||||+||+    ++
T Consensus        79 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~----~l  141 (213)
T cd03301          79 QNYALYPHMTVY-----D-------NIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-DRKPKQLSGGQRQRV----AL  141 (213)
T ss_pred             cChhhccCCCHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-hCChhhCCHHHHHHH----HH
Confidence            987655332220     0       00000000  00000001112233456665443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++...     ..+..+.++...+++++ +|+....... + ++++++|+++..
T Consensus       142 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-sH~~~~~~~~~d~i~~l~~g~~~~~  212 (213)
T cd03301         142 GRAIVR-E--PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV-THDQVEAMTMADRIAVMNDGQIQQI  212 (213)
T ss_pred             HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEec
Confidence            999996 5  8999999  99993332     22334333334567777 8888776653 3 888899988764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2.6e-21  Score=193.65  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=136.8

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++.+.|+....                  -..+++.+.+|++++|+|+||||||||+++|+|.    ..|++|
T Consensus         3 ~~~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G   60 (255)
T PRK11300          3 QPLLSVSGLMMRFGGLLA------------------VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF----YKPTGG   60 (255)
T ss_pred             CceEEEeeEEEEECCEEE------------------EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC----cCCCcc
Confidence            345677888887653221                  2345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccce--eeEEee--cCcccccCCcccccccCcC--
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTC--QVYLIM--CGVHQVSGIPDELTSATHL--  303 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~--il~v~D--s~~~~~~~l~~~l~~~~~l--  303 (537)
                          +|.++| ..+...+      .....+..+++++|++.++...+..  +.+...  ...+........ ......  
T Consensus        61 ----~i~~~g-~~~~~~~------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~  128 (255)
T PRK11300         61 ----TILLRG-QHIEGLP------GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT-PAFRRAES  128 (255)
T ss_pred             ----eEEECC-EECCCCC------HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccc-cccccchh
Confidence                899887 4332111      1111224578889998766543321  100000  000000000000 000000  


Q ss_pred             CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHH
Q psy16304        304 PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYL  376 (537)
Q Consensus       304 ~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~  376 (537)
                      .........+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  ..+++   .+.
T Consensus       129 ~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~  200 (255)
T PRK11300        129 EALDRAATWLERVGLLEHA-NRQAGNLAYGQQRRL----EIARCMVT-Q--PEILMLDEPAAGLNPKETKELDELIAELR  200 (255)
T ss_pred             HHHHHHHHHHHhCChhhhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence            0001112223456765543 445889999999999    99999997 5  8999999  9999322  23333   332


Q ss_pred             hcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++.+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus       201 ~~~~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        201 NEHNVTVLLI-EHDMKLVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             hhcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence            3324566777 8888887553 3 889999999877766554

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.9e-21  Score=197.51  Aligned_cols=214  Identities=13%  Similarity=0.122  Sum_probs=137.6

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++.+.|+...                ..+-.++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|
T Consensus         3 ~~~l~~~~l~~~~~~~~----------------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~----~~p~~G   62 (279)
T PRK13635          3 EEIIRVEHISFRYPDAA----------------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL----LLPEAG   62 (279)
T ss_pred             CceEEEEEEEEEeCCCC----------------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc
Confidence            44677888888775311                0012345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccc--cCcCCcc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~  306 (537)
                          +|.++| ..+...      .. ......+++++|++. .+...+.     .+       ++......  .......
T Consensus        63 ----~i~~~g-~~i~~~------~~-~~~~~~i~~~~q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~  118 (279)
T PRK13635         63 ----TITVGG-MVLSEE------TV-WDVRRQVGMVFQNPDNQFVGATV-----QD-------DVAFGLENIGVPREEMV  118 (279)
T ss_pred             ----EEEECC-EECCcC------cH-HHHhhheEEEEeCHHHhcccccH-----HH-------HHhhhHhhCCCCHHHHH
Confidence                999987 443211      11 112367999999863 2222111     00       00000000  0000000


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~  379 (537)
                      .+....+..+|+.... ...+..|||||+||+    +++++++. +  |+++++|  |+|++..  ..+++   .+.+..
T Consensus       119 ~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~  190 (279)
T PRK13635        119 ERVDQALRQVGMEDFL-NREPHRLSGGQKQRV----AIAGVLAL-Q--PDIIILDEATSMLDPRGRREVLETVRQLKEQK  190 (279)
T ss_pred             HHHHHHHHHcCChhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            1123334456776543 455889999999999    99999997 5  8999999  9999332  22333   333333


Q ss_pred             CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+++++ +|+......++ ++++++|+++..+...++
T Consensus       191 ~~tiliv-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (279)
T PRK13635        191 GITVLSI-THDLDEAAQADRVIVMNKGEILEEGTPEEI  227 (279)
T ss_pred             CCEEEEE-ecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence            4566666 78877766544 889999999888776655

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=4.2e-21  Score=194.83  Aligned_cols=210  Identities=17%  Similarity=0.166  Sum_probs=135.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                 .+-.+++|.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~~~~~~-----------------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl----~~p~~G--   59 (277)
T PRK13652          3 LIETRDLCYSYSGSK-----------------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI----LKPTSG--   59 (277)
T ss_pred             eEEEEEEEEEeCCCC-----------------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce--
Confidence            456778888764221                 012345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~  307 (537)
                        ++.++| ..+...   ..    ......+++++|++.. +...+.     .+       ++..... ......   ..
T Consensus        60 --~i~~~g-~~~~~~---~~----~~~~~~i~~v~q~~~~~~~~~tv-----~~-------~l~~~~~-~~~~~~~~~~~  116 (277)
T PRK13652         60 --SVLIRG-EPITKE---NI----REVRKFVGLVFQNPDDQIFSPTV-----EQ-------DIAFGPI-NLGLDEETVAH  116 (277)
T ss_pred             --EEEECC-EECCcC---CH----HHHHhheEEEecCcccccccccH-----HH-------HHHhHHH-HcCCCHHHHHH
Confidence              899887 433211   11    1233678999998631 111111     00       0000000 000000   01


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~  380 (537)
                      .....+..+|+.... ...+..|||||+||+    +++++++. +  |+++++|  |+|++..  .   .++..+.++.+
T Consensus       117 ~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrl----~laraL~~-~--p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g  188 (277)
T PRK13652        117 RVSSALHMLGLEELR-DRVPHHLSGGEKKRV----AIAGVIAM-E--PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG  188 (277)
T ss_pred             HHHHHHHHCCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            122334456765443 445889999999999    99999997 5  8999999  9999322  2   23334434334


Q ss_pred             EEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +|+....... + ++++++|+++..+..+++
T Consensus       189 ~tvli~-tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  225 (277)
T PRK13652        189 MTVIFS-THQLDLVPEMADYIYVMDKGRIVAYGTVEEI  225 (277)
T ss_pred             CEEEEE-ecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence            566776 8998877543 3 899999999988877666

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=7.7e-21  Score=199.19  Aligned_cols=193  Identities=17%  Similarity=0.108  Sum_probs=130.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+||||||||||+++|+|.    ..|++|    ++.++| ..+...+.  ... ....++.++++||
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~~~g-~~~~~~~~--~~~-~~~~~~~i~~v~q   83 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL----TRPQKG----RIVLNG-RVLFDAEK--GIC-LPPEKRRIGYVFQ   83 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccccc--ccc-cchhhCCEEEEcC
Confidence            35677889999999999999999999999999    999999    898887 44321100  000 1122367999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++.++..            +++...+   .. ....+....+..+|+.... ...+.+|||||+||+    +++++
T Consensus        84 ~~~l~~~~tv~------------enl~~~~---~~-~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qRv----alara  142 (352)
T PRK11144         84 DARLFPHYKVR------------GNLRYGM---AK-SMVAQFDKIVALLGIEPLL-DRYPGSLSGGEKQRV----AIGRA  142 (352)
T ss_pred             CcccCCCCcHH------------HHHHhhh---hh-hhHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHH----HHHHH
Confidence            98877654331            0110000   00 0011122334456776543 445899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++. +  |++++||  |++++..     ...+..+.++.+.+++++ +||..+....+  +++|++|+++..+.+.++.
T Consensus       143 L~~-~--p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v-THd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~  217 (352)
T PRK11144        143 LLT-A--PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV-SHSLDEILRLADRVVVLEQGKVKAFGPLEEVW  217 (352)
T ss_pred             HHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            996 5  8999999  9999332     223344444434566777 89988776543  8999999999998887764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.81  E-value=5.2e-21  Score=187.19  Aligned_cols=188  Identities=21%  Similarity=0.227  Sum_probs=123.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+...        ...+...+++++
T Consensus        19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~--------~~~~~~~i~~v~   81 (220)
T cd03263          19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE----LRPTSG----TAYING-YSIRTD--------RKAARQSLGYCP   81 (220)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-Eecccc--------hHHHhhhEEEec
Confidence            345677889999999999999999999999999    999999    898887 443211        122235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+.     .+       ++.... ......   ...+....+..+|+.... ...+.+||+||+||+    +
T Consensus        82 q~~~~~~~~tv-----~~-------~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~  143 (220)
T cd03263          82 QFDALFDELTV-----RE-------HLRFYA-RLKGLPKSEIKEEVELLLRVLGLTDKA-NKRARTLSGGMKRKL----S  143 (220)
T ss_pred             CcCCccccCCH-----HH-------HHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHHH-hChhhhCCHHHHHHH----H
Confidence            98775543222     00       000000 000000   001112233356665433 344889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |+++++|  |+|++...  .+   +..+. . +.+++++ +|+....... + ++++++|+++..+.++
T Consensus       144 la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  217 (220)
T cd03263         144 LAIALIG-G--PSVLLLDEPTSGLDPASRRAIWDLILEVR-K-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ  217 (220)
T ss_pred             HHHHHhc-C--CCEEEECCCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence            9999996 5  8999999  99994332  22   23332 2 3566676 8998877653 3 8889999998776554


Q ss_pred             c
Q psy16304        415 N  415 (537)
Q Consensus       415 d  415 (537)
                      +
T Consensus       218 ~  218 (220)
T cd03263         218 E  218 (220)
T ss_pred             H
Confidence            3

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.3e-21  Score=194.29  Aligned_cols=199  Identities=12%  Similarity=0.049  Sum_probs=126.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++| .++..++   .    ..++..+++++
T Consensus        28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~v~   91 (265)
T PRK10575         28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH----QPPSEG----EILLDA-QPLESWS---S----KAFARKVAYLP   91 (265)
T ss_pred             eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-EehhhCC---H----HHHhhheEEec
Confidence            345677889999999999999999999999999    999999    898887 4332111   1    11235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |++.++...+..-.+.+.    .. .....+..... ....+....+..+|+.+.. ...+.+|||||+||+    ++++
T Consensus        92 q~~~~~~~~tv~e~l~~~----~~-~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~lar  160 (265)
T PRK10575         92 QQLPAAEGMTVRELVAIG----RY-PWHGALGRFGA-ADREKVEEAISLVGLKPLA-HRLVDSLSGGERQRA----WIAM  160 (265)
T ss_pred             cCCCCCCCccHHHHHHhC----cc-cccccccCCCH-HHHHHHHHHHHHcCCHHHh-cCCcccCCHHHHHHH----HHHH
Confidence            986654432210000000    00 00000000000 0011122334456665433 445889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++. +  |++++||  |+|++..  .   .++..+.+..+.+++++ +|+....... + ++++++|+++..+...++
T Consensus       161 al~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~-sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        161 LVAQ-D--SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV-LHDINMAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             HHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence            9997 5  8999999  9999333  2   33344433334566776 8998877543 3 889999999877766554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.81  E-value=4.9e-21  Score=186.17  Aligned_cols=181  Identities=15%  Similarity=0.166  Sum_probs=119.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+.           ..++..+++++
T Consensus        17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~-----------~~~~~~i~~~~   76 (210)
T cd03269          17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI----ILPDSG----EVLFDG-KPLD-----------IAARNRIGYLP   76 (210)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Cchh-----------HHHHccEEEec
Confidence            345677889999999999999999999999999    899999    888887 3221           11235789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+..     +       ++..... .....   ........+..+|+.... ...+.+|||||+||+    +
T Consensus        77 q~~~~~~~~tv~-----e-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~  138 (210)
T cd03269          77 EERGLYPKMKVI-----D-------QLVYLAQ-LKGLKKEEARRRIDEWLERLELSEYA-NKRVEELSKGNQQKV----Q  138 (210)
T ss_pred             cCCcCCcCCcHH-----H-------HHHHHHH-HcCCChHHHHHHHHHHHHHcCChHHH-hCcHhhCCHHHHHHH----H
Confidence            998755432220     0       0000000 00000   001122234456765443 344889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      ++++++. +  |+++++|  |+|++...     ..++.+.++ +.+++++ +|+....... + ++++++|+++..
T Consensus       139 la~al~~-~--p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         139 FIAAVIH-D--PELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILS-THQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             HHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEec
Confidence            9999996 5  8999999  99994332     222333332 4567777 8998877653 3 888899987653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.81  E-value=8.4e-21  Score=203.78  Aligned_cols=225  Identities=16%  Similarity=0.115  Sum_probs=157.6

Q ss_pred             hhhcccccCCCcccCCC-CCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304        150 GILMGIQNVPNFQTSSV-LSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  228 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~  228 (537)
                      +.+..++++.+.|+... +....        ...+.+.+++||.+.+|+++||||.+|||||||.++|+|.    ..|+.
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~--------~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL----~~P~~  345 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRE--------RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL----LPPSS  345 (539)
T ss_pred             CceeEeeeeeeeecccccccccc--------ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC----CCCCC
Confidence            66788999999987643 11110        1125577889999999999999999999999999999999    99999


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC--CCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR--PDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~--~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      |    .+.++| .+   .+..+. +. ...+..+.++||++...  +.++.            ...+.+.+.......  
T Consensus       346 G----~i~~~g-~~---~~~~~~-~~-~~~r~~~QmvFQdp~~SLnPr~tV------------~~~i~epL~~~~~~~~~  403 (539)
T COG1123         346 G----SIIFDG-QD---LDLTGG-EL-RRLRRRIQMVFQDPYSSLNPRMTV------------GDILAEPLRIHGGGSGA  403 (539)
T ss_pred             c----eEEEeC-cc---cccccc-hh-hhhhhheEEEEeCcccccCccccH------------HHHHHhHHhhhcccchH
Confidence            9    888887 33   222211 11 12336788899998732  22222            111222222111111  


Q ss_pred             -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHH
Q psy16304        305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYL  376 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~  376 (537)
                       ...+....+..+|++..--.+++++|||||+||+    ++|+++.. +  |+++++|  |+.+     ....+++.++.
T Consensus       404 ~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv----aIARALa~-~--P~lli~DEp~SaLDvsvqa~VlnLl~~lq  476 (539)
T COG1123         404 ERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV----AIARALAL-E--PKLLILDEPVSALDVSVQAQVLNLLKDLQ  476 (539)
T ss_pred             HHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH----HHHHHHhc-C--CCEEEecCCccccCHHHHHHHHHHHHHHH
Confidence             1112334466788876445677999999999999    99999996 5  8999999  7777     34444556666


Q ss_pred             hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++.+.+.+.+ +||+......+  +.+|+.|+++..|..+++
T Consensus       477 ~e~g~t~lfI-SHDl~vV~~i~drv~vm~~G~iVE~G~~~~v  517 (539)
T COG1123         477 EELGLTYLFI-SHDLAVVRYIADRVAVMYDGRIVEEGPTEKV  517 (539)
T ss_pred             HHhCCEEEEE-eCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence            6777788888 89999998766  999999999999955555

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=5.3e-21  Score=194.98  Aligned_cols=197  Identities=17%  Similarity=0.127  Sum_probs=127.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+..... + .. ...++..++++|
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl----~~p~~G----~i~~~g-~~i~~~~~-~-~~-~~~~~~~ig~v~   91 (286)
T PRK13646         24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL----LKPTTG----TVTVDD-ITITHKTK-D-KY-IRPVRKRIGMVF   91 (286)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc-c-ch-HHHHHhheEEEe
Confidence            345677889999999999999999999999999    999999    999887 44422110 0 01 122346799999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |++.  ++.. +.     .+       ++......  .............+..+|+........+.+|||||+||+    
T Consensus        92 q~~~~~l~~~-tv-----~e-------~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv----  154 (286)
T PRK13646         92 QFPESQLFED-TV-----ER-------EIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI----  154 (286)
T ss_pred             cChHhccchh-hH-----HH-------HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----
Confidence            9863  2211 10     01       00000000  000000111223344677752222445899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~n  413 (537)
                      +++++++. +  |+++++|  |+|++...     .++..+.++.+.+++++ +|+.+.... ++ ++++++|+++..+..
T Consensus       155 ~laraL~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v-tH~~~~~~~~~dri~~l~~G~i~~~g~~  230 (286)
T PRK13646        155 AIVSILAM-N--PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV-SHDMNEVARYADEVIVMKEGSIVSQTSP  230 (286)
T ss_pred             HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999996 5  8999999  99993332     23334333334577777 899887654 33 899999999988877


Q ss_pred             cch
Q psy16304        414 KNL  416 (537)
Q Consensus       414 kdl  416 (537)
                      .++
T Consensus       231 ~~~  233 (286)
T PRK13646        231 KEL  233 (286)
T ss_pred             HHH
Confidence            665

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.80  E-value=7.5e-21  Score=199.45  Aligned_cols=197  Identities=16%  Similarity=0.081  Sum_probs=130.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+..... +. . ....++.+++++|
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~~~g-~~i~~~~~-~~-~-~~~~~~~i~~v~q   82 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL----TRPDEG----EIVLNG-RTLFDSRK-GI-F-LPPEKRRIGYVFQ   82 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECccCcc-cc-c-cchhhCCeEEEec
Confidence            35677889999999999999999999999999    999999    999887 44321110 00 0 0122367999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++.++..            +++...+..........+....+..+|+.... ...+.+|||||+||+    +++++
T Consensus        83 ~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGqkqRv----alAra  145 (354)
T TIGR02142        83 EARLFPHLSVR------------GNLRYGMKRARPSERRISFERVIELLGIGHLL-GRLPGRLSGGEKQRV----AIGRA  145 (354)
T ss_pred             CCccCCCCcHH------------HHHHHHhhccChhHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHH
Confidence            98876553331            01100000000000011122334466776543 455899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++. +  |++++||  |+|++..     ...+..+.++.+.+++++ +|+.......+  +++|++|+++..+.+.++.
T Consensus       146 L~~-~--p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       146 LLS-S--PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV-SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             HHc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence            996 5  8999999  9999332     223344444434566666 89988776533  8999999999888777663

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.80  E-value=3.2e-21  Score=188.85  Aligned_cols=183  Identities=17%  Similarity=0.127  Sum_probs=120.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| .++.        ..    ...+++++
T Consensus        21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~--------~~----~~~i~~v~   79 (220)
T cd03293          21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL----ERPTSG----EVLVDG-EPVT--------GP----GPDRGYVF   79 (220)
T ss_pred             eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECc--------cc----cCcEEEEe
Confidence            445677889999999999999999999999999    899999    888887 4332        11    25689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+..            +++..... .....   ........+..+|+.... ...+.+|||||+||+    +
T Consensus        80 q~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~  141 (220)
T cd03293          80 QQDALLPWLTVL------------DNVALGLE-LQGVPKAEARERAEELLELVGLSGFE-NAYPHQLSGGMRQRV----A  141 (220)
T ss_pred             cccccccCCCHH------------HHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHH----H
Confidence            987755432220            00000000 00000   001122334456665443 444789999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc--CCcEEEEec
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS--CNCQVYLIS  412 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~--~G~ii~~g~  412 (537)
                      ++++++. +  |++++||  |+|++..  ..++   .++.+..+.+++++ +|+..+....+  +++++  +|+++....
T Consensus       142 la~al~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~~~G~i~~~~~  217 (220)
T cd03293         142 LARALAV-D--PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV-THDIDEAVFLADRVVVLSARPGRIVAEVE  217 (220)
T ss_pred             HHHHHHc-C--CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence            9999997 5  8999999  9999332  2233   33333334567777 89988765433  78888  798876544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=5.2e-21  Score=195.25  Aligned_cols=195  Identities=15%  Similarity=0.147  Sum_probs=126.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+...+.   ......++..++++|
T Consensus        23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~   90 (288)
T PRK13643         23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL----LQPTEG----KVTVGD-IVVSSTSK---QKEIKPVRKKVGVVF   90 (288)
T ss_pred             eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc---cccHHHHHhhEEEEe
Confidence            356778889999999999999999999999999    999999    999887 54421110   011122346799999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |++.  ++.. +.     .|       ++....... ...   ...+....+..+|+........+..|||||+||+   
T Consensus        91 q~~~~~l~~~-tv-----~~-------~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv---  153 (288)
T PRK13643         91 QFPESQLFEE-TV-----LK-------DVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV---  153 (288)
T ss_pred             cCcchhcccc-hH-----HH-------HHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH---
Confidence            9862  2211 11     11       000000000 000   0011223344567643222445899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |+|++..  ..++   ..+.+. +.+|+++ +||...... ++ ++++++|+++..+.
T Consensus       154 -aiA~aL~~-~--p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~v-tHd~~~~~~~~dri~~l~~G~i~~~g~  227 (288)
T PRK13643        154 -AIAGILAM-E--PEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLV-THLMDDVADYADYVYLLEKGHIISCGT  227 (288)
T ss_pred             -HHHHHHHh-C--CCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECC
Confidence             99999997 5  8999999  9999332  2233   333332 4567777 899887754 33 99999999999888


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      +.++
T Consensus       228 ~~~~  231 (288)
T PRK13643        228 PSDV  231 (288)
T ss_pred             HHHH
Confidence            7776

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.80  E-value=4.2e-21  Score=189.24  Aligned_cols=193  Identities=16%  Similarity=0.085  Sum_probs=123.7

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+...+      ....++..+++++
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~~~   81 (230)
T TIGR03410        17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL----LPVKSG----SIRLDG-EDITKLP------PHERARAGIAYVP   81 (230)
T ss_pred             cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EECCCCC------HHHHHHhCeEEec
Confidence            345677889999999999999999999999999    999999    888887 4332111      1112235789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEec-cCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG-LDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG-l~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++.+++..+..     +       ++........ ..........+..++ +... ....+.+|||||+||+    +++
T Consensus        82 q~~~~~~~~tv~-----~-------~l~~~~~~~~-~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv----~la  143 (230)
T TIGR03410        82 QGREIFPRLTVE-----E-------NLLTGLAALP-RRSRKIPDEIYELFPVLKEM-LGRRGGDLSGGQQQQL----AIA  143 (230)
T ss_pred             cCCcccCCCcHH-----H-------HHHHHHHhcC-cchHHHHHHHHHHHHhHHHH-hhCChhhCCHHHHHHH----HHH
Confidence            998765432220     0       0000000000 000000111122333 2222 2444889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++...  .+   +.++.+..+.+++++ +|+.+..... + ++++++|+++..+..+++
T Consensus       144 ~al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       144 RALVT-R--PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            99996 5  8999999  99993332  22   233333334566666 8888877653 3 888999999887776554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=6.4e-21  Score=189.21  Aligned_cols=193  Identities=12%  Similarity=0.060  Sum_probs=125.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| ..+...     ......++..+++++|
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~-----~~~~~~~~~~i~~~~q   84 (240)
T PRK09493         19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL----EEITSG----DLIVDG-LKVNDP-----KVDERLIRQEAGMVFQ   84 (240)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcC-----ChhHHHHhhceEEEec
Confidence            45677889999999999999999999999999    999999    899887 443211     0011223467899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.+++..+..     +       ++...   ................+..+|+.... ...+..||+||+||+    ++
T Consensus        85 ~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~l  147 (240)
T PRK09493         85 QFYLFPHLTAL-----E-------NVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRV----AI  147 (240)
T ss_pred             ccccCCCCcHH-----H-------HHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-hcChhhcCHHHHHHH----HH
Confidence            87755432220     0       00000   00000000001112334456765443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |+++++|  |+|++..     ..++..+.+. +.+++++ +|+.......+  ++++++|+++..+...+
T Consensus       148 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  222 (240)
T PRK09493        148 ARALAV-K--PKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIV-THEIGFAEKVASRLIFIDKGRIAEDGDPQV  222 (240)
T ss_pred             HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence            999996 5  8999999  9999332     2233333333 4566666 88888776533  88999999987766555


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       223 ~  223 (240)
T PRK09493        223 L  223 (240)
T ss_pred             H
Confidence            4

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.80  E-value=6.7e-21  Score=184.60  Aligned_cols=177  Identities=15%  Similarity=0.118  Sum_probs=115.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+..          ..++..+++++|
T Consensus        18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~----------~~~~~~i~~~~q   78 (205)
T cd03226          18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGL----IKESSG----SILLNG-KPIKA----------KERRKSIGYVMQ   78 (205)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEhhh----------HHhhcceEEEec
Confidence            45677889999999999999999999999999    999999    888887 33310          112356899999


Q ss_pred             CCCC-CCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        268 TPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       268 ~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      ++.. +...+.     .+       ++........  ....+....+..+|+.... ...+.+|||||+||+    ++++
T Consensus        79 ~~~~~~~~~tv-----~e-------~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~lar  139 (205)
T cd03226          79 DVDYQLFTDSV-----RE-------ELLLGLKELD--AGNEQAETVLKDLDLYALK-ERHPLSLSGGQKQRL----AIAA  139 (205)
T ss_pred             ChhhhhhhccH-----HH-------HHhhhhhhcC--ccHHHHHHHHHHcCCchhc-CCCchhCCHHHHHHH----HHHH
Confidence            8631 111111     01       0000000000  0001122334456766543 455889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ  407 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i  407 (537)
                      +++. +  |+++++|  |+|++..  ..+   +..+.+. +.+++++ +|+....... + ++++++|++
T Consensus       140 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i  204 (205)
T cd03226         140 ALLS-G--KDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVI-THDYEFLAKVCDRVLLLANGAI  204 (205)
T ss_pred             HHHh-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence            9996 5  8999999  9999332  222   2333332 4566666 8998877653 3 888888875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.80  E-value=5.8e-21  Score=192.50  Aligned_cols=216  Identities=10%  Similarity=0.018  Sum_probs=137.2

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|++..+                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.| 
T Consensus         6 ~~l~i~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G-   62 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTV------------------AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL----MTPAHG-   62 (265)
T ss_pred             cEEEEEEEEEEECCEEE------------------eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCc-
Confidence            35667788887654222                  2345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                         ++.++| .++..++.       ......+++++|++.++...+.     .+ ....... ....+..... ......
T Consensus        63 ---~i~~~g-~~~~~~~~-------~~~~~~i~~v~q~~~~~~~~tv-----~~~~~~~~~~-~~~~~~~~~~-~~~~~~  124 (265)
T PRK10253         63 ---HVWLDG-EHIQHYAS-------KEVARRIGLLAQNATTPGDITV-----QELVARGRYP-HQPLFTRWRK-EDEEAV  124 (265)
T ss_pred             ---EEEECC-EEhhhCCH-------HHHhhheEEeeccCcCCCCCcH-----HHHHHhCccc-ccccccCCCH-HHHHHH
Confidence               888887 43321111       1122568999999875543221     11 0000000 0000000000 000112


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++..+.+..+.+
T Consensus       125 ~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~t  196 (265)
T PRK10253        125 TKAMQATGITHLA-DQSVDTLSGGQRQRA----WIAMVLAQ-E--TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYT  196 (265)
T ss_pred             HHHHHHcCCHHHh-cCCcccCChHHHHHH----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            2334456765443 445899999999999    99999996 5  8999999  9999332     22334443333456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++ +|+.......+  ++++++|+++..+..+++
T Consensus       197 iii~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        197 LAAV-LHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             EEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            6666 89988765543  889999999887776655

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=5.6e-21  Score=194.52  Aligned_cols=214  Identities=13%  Similarity=0.153  Sum_probs=138.9

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+...                 .+..++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|
T Consensus         3 ~~~l~~~~l~~~~~~~~-----------------~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl----~~p~~G   61 (283)
T PRK13636          3 DYILKVEELNYNYSDGT-----------------HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI----LKPSSG   61 (283)
T ss_pred             CceEEEEeEEEEeCCCC-----------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCcc
Confidence            34677888888875211                 012345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L  305 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~  305 (537)
                          ++.++| ..+.. +  .. . ...++..+++++|++.. +...+.     .+       ++....... ...   .
T Consensus        62 ----~i~i~g-~~~~~-~--~~-~-~~~~~~~ig~v~q~~~~~~~~~tv-----~e-------~l~~~~~~~-~~~~~~~  118 (283)
T PRK13636         62 ----RILFDG-KPIDY-S--RK-G-LMKLRESVGMVFQDPDNQLFSASV-----YQ-------DVSFGAVNL-KLPEDEV  118 (283)
T ss_pred             ----EEEECC-EECCC-C--cc-h-HHHHHhhEEEEecCcchhhccccH-----HH-------HHHhHHHHc-CCCHHHH
Confidence                999887 44321 0  00 1 12234679999998631 111111     01       000000000 000   0


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~  378 (537)
                      .......+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++..+.++
T Consensus       119 ~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrl----~laraL~~-~--p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~  190 (283)
T PRK13636        119 RKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRV----AIAGVLVM-E--PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE  190 (283)
T ss_pred             HHHHHHHHHHCCChhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            01122334466776544 445899999999999    99999996 5  8999999  9999322     2334454444


Q ss_pred             CCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        379 VSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+++++ +|+...... ++ ++++++|+++..|.+.++
T Consensus       191 ~g~tillv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  229 (283)
T PRK13636        191 LGLTIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEV  229 (283)
T ss_pred             CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            34567777 899887764 33 899999999988887765

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.80  E-value=7.4e-21  Score=187.23  Aligned_cols=210  Identities=15%  Similarity=0.104  Sum_probs=131.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+....   .           ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|  
T Consensus         6 ~l~~~~l~~~~~~~~~---~-----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~p~~G--   65 (228)
T PRK10584          6 IVEVHHLKKSVGQGEH---E-----------LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL----DDGSSG--   65 (228)
T ss_pred             eEEEeeeEEEccCCCc---c-----------eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCe--
Confidence            4677888887653210   0           0012345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        ++.++| ..+..++.   ..........+++++|++.++...+.     .|       ++.... ......   ...+
T Consensus        66 --~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~q~~~l~~~~tv-----~~-------~l~~~~-~~~~~~~~~~~~~  126 (228)
T PRK10584         66 --EVSLVG-QPLHQMDE---EARAKLRAKHVGFVFQSFMLIPTLNA-----LE-------NVELPA-LLRGESSRQSRNG  126 (228)
T ss_pred             --eEEECC-EEcccCCH---HHHHHHHhheEEEEEcccccCCCcCH-----HH-------HHHHHH-HhcCCCHHHHHHH
Confidence              898887 44432221   11111223568999999876543222     00       000000 000000   0111


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~  381 (537)
                      ....+..+|+.... ...+..|||||+||+    +++++++. +  |+++++|  |+|++..  ..+   +.++.++.+.
T Consensus       127 ~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrl----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  198 (228)
T PRK10584        127 AKALLEQLGLGKRL-DHLPAQLSGGEQQRV----ALARAFNG-R--PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT  198 (228)
T ss_pred             HHHHHHHcCCHhHh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            22334456665443 345889999999999    99999996 5  8999999  9999332  222   2333333345


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVY  409 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~  409 (537)
                      +++++ +|+....+.++ ++++++|+++.
T Consensus       199 tii~~-sH~~~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        199 TLILV-THDLQLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             EEEEE-ecCHHHHHhCCEEEEEECCEEEe
Confidence            66776 78877666544 78888888754

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.80  E-value=8.5e-21  Score=189.74  Aligned_cols=200  Identities=12%  Similarity=0.104  Sum_probs=128.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEee---cCC---CchhhHHHHh
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD---LGG---SEDFRTIWKQ  260 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D---~~G---~~~~r~~~~~  260 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+..++   ..+   .......++.
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~   87 (252)
T TIGR03005        17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTL----EPIDEG----QIQVEG-EQLYHMPGRNGPLVPADEKHLRQMRN   87 (252)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccccccccccccchhHHHHHhh
Confidence            345677889999999999999999999999999    999999    899887 5543332   000   0001122346


Q ss_pred             hhhccccCCCCCCCccceeeEEeecCcccccCCccc-c--cccCcCCccccCCccEEEeccCccCccchhhhhcCCCcee
Q psy16304        261 YLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE-L--TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIIS  337 (537)
Q Consensus       261 ~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~-l--~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqr  337 (537)
                      .+++++|++.+++..+..     +       ++... .  ...............+..+|+.... ...+.+|||||+||
T Consensus        88 ~i~~v~q~~~~~~~~tv~-----~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qr  154 (252)
T TIGR03005        88 KIGMVFQSFNLFPHKTVL-----D-------NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-DHMPAQLSGGQQQR  154 (252)
T ss_pred             CeEEEecCcccCCCCcHH-----H-------HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-hcChhhcCHHHHHH
Confidence            799999998765432220     0       00000 0  0000000001112233456665443 44588999999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQV  408 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii  408 (537)
                      +    +++++++. +  |+++++|  |+|++..  ..   .++++.++...+++++ +|+...... ++ ++++++|+++
T Consensus       155 v----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T TIGR03005       155 V----AIARALAM-R--PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV-THEMGFAREFADRVCFFDKGRIV  226 (252)
T ss_pred             H----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEE
Confidence            9    99999996 5  8999999  9999433  22   2334433334566666 888887754 33 8899999998


Q ss_pred             EEecccch
Q psy16304        409 YLISAKNL  416 (537)
Q Consensus       409 ~~g~nkdl  416 (537)
                      ..+..+++
T Consensus       227 ~~g~~~~~  234 (252)
T TIGR03005       227 EQGKPDEI  234 (252)
T ss_pred             EeCCHHHH
Confidence            87766555

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.80  E-value=7.7e-21  Score=210.31  Aligned_cols=279  Identities=13%  Similarity=0.080  Sum_probs=174.7

Q ss_pred             ccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHH
Q psy16304         68 FANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHL  147 (537)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~  147 (537)
                      +.+.+.+.++++--        ..+.....|+..+...+..++....+++++.++++.+....+. .+...         
T Consensus       251 ~~g~it~g~l~a~~--------~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~---------  312 (544)
T TIGR01842       251 IDGEITPGMMIAGS--------ILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPE---------  312 (544)
T ss_pred             HcCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCC---------
Confidence            35567777766532        2223457899999999999999999999999988743322111 00000         


Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  227 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt  227 (537)
                       ....+.++++...|++..   .             ..-.++++.+++|++++|+|+||||||||+++|+|.    +.|+
T Consensus       313 -~~~~i~~~~v~~~y~~~~---~-------------~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~  371 (544)
T TIGR01842       313 -PEGHLSVENVTIVPPGGK---K-------------PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI----WPPT  371 (544)
T ss_pred             -CCCeEEEEEEEEEcCCCC---c-------------cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCC
Confidence             012356777777664321   0             012345678889999999999999999999999999    9999


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCc
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~  305 (537)
                      +|    ++.++| .++..++.       ..+++.+++++|++.++.. ..+++.+.-+ .+.++   +.+.++..+ +  
T Consensus       372 ~G----~i~~~g-~~i~~~~~-------~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~---~~~~~~~~~-~--  433 (544)
T TIGR01842       372 SG----SVRLDG-ADLKQWDR-------ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEK---IIEAAKLAG-V--  433 (544)
T ss_pred             Cc----eEEECC-EehhhCCH-------HHHhhheEEecCCcccccccHHHHHhccCCCCCHHH---HHHHHHHhC-h--
Confidence            99    999987 55543332       2344789999999987754 2222211100 11111   000000000 0  


Q ss_pred             cccCCccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-
Q psy16304        306 VDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-  378 (537)
Q Consensus       306 ~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-  378 (537)
                          ...+..+  |+...- ......|||||+||+    ++||+++. +  |+++++|  |++++...  .+.+.+.+. 
T Consensus       434 ----~~~i~~l~~gl~t~~-~~~g~~LSgGq~qrl----~lARall~-~--~~ililDEpts~LD~~~~~~i~~~l~~~~  501 (544)
T TIGR01842       434 ----HELILRLPDGYDTVI-GPGGATLSGGQRQRI----ALARALYG-D--PKLVVLDEPNSNLDEEGEQALANAIKALK  501 (544)
T ss_pred             ----HHHHHhCcccccccc-CCCcCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence                0000011  111110 111456999999999    99999996 5  8999999  99994332  233433332 


Q ss_pred             -CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        379 -VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 -~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                       .+.+++++ +|+......++ ++++++|+++..|++.++
T Consensus       502 ~~~~tvi~i-th~~~~~~~~d~i~~l~~G~i~~~g~~~~l  540 (544)
T TIGR01842       502 ARGITVVVI-THRPSLLGCVDKILVLQDGRIARFGERDEV  540 (544)
T ss_pred             hCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence             23466666 78877666555 899999999988877665

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.80  E-value=9.5e-21  Score=188.12  Aligned_cols=201  Identities=14%  Similarity=0.095  Sum_probs=126.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++...+      .+...+..+++++|
T Consensus        20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~~~q   84 (242)
T TIGR03411        20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGK----TRPDEG----SVLFGG-TDLTGLP------EHQIARAGIGRKFQ   84 (242)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEECC-eecCCCC------HHHHHhcCeeEecc
Confidence            45677889999999999999999999999999    899999    899887 4332111      11122356999999


Q ss_pred             CCCCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.+++..+..  +.+.....    ......+.....-.........+..+|+.... ...+..|||||+||+    +++
T Consensus        85 ~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrv----~la  155 (242)
T TIGR03411        85 KPTVFENLTVFENLELALPRD----KSVFASLFFRLSAEEKDRIEEVLETIGLADEA-DRLAGLLSHGQKQWL----EIG  155 (242)
T ss_pred             ccccCCCCCHHHHHHHhhhcc----cccccccccccHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHH
Confidence            98766543321  10000000    00000000000000011122334456766543 345889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++..  ..+++.+.+- .+.+++++ +|+.+..... + ++++++|+++..+...++
T Consensus       156 ral~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~  229 (242)
T TIGR03411       156 MLLMQ-D--PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVV-EHDMEFVRSIADKVTVLHQGSVLAEGSLDQV  229 (242)
T ss_pred             HHHhc-C--CCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence            99997 5  8999999  9999333  2233322211 13566666 8888877653 3 888999999887766555

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=5.8e-21  Score=193.53  Aligned_cols=210  Identities=13%  Similarity=0.047  Sum_probs=134.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                 .+..++++.+.+|++++|+|+||||||||+++|+|.    +.|++|  
T Consensus         4 ~l~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G--   60 (274)
T PRK13647          4 IIEVEDLHFRYKDGT-----------------KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI----YLPQRG--   60 (274)
T ss_pred             eEEEEEEEEEeCCCC-----------------eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCce--
Confidence            466788888764211                 022345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCcccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~  308 (537)
                        +|.++| ..+.   .  .. . ......+++++|++. .+...+.     .+       ++.....  .........+
T Consensus        61 --~i~~~g-~~~~---~--~~-~-~~~~~~i~~v~q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~  118 (274)
T PRK13647         61 --RVKVMG-REVN---A--EN-E-KWVRSKVGLVFQDPDDQVFSSTV-----WD-------DVAFGPVNMGLDKDEVERR  118 (274)
T ss_pred             --EEEECC-EECC---C--CC-H-HHHHhhEEEEecChhhhhccCcH-----HH-------HHHhhHHHcCCCHHHHHHH
Confidence              999887 4331   1  11 1 122367999999863 1111111     00       0000000  0000000011


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++..+.+. +.
T Consensus       119 ~~~~l~~~~L~~~~-~~~~~~LSgG~~qrv----~laraL~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~  189 (274)
T PRK13647        119 VEEALKAVRMWDFR-DKPPYHLSYGQKKRV----AIAGVLAM-D--PDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GK  189 (274)
T ss_pred             HHHHHHHCCCHHHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC
Confidence            22334466776543 555899999999999    99999996 5  8999999  9999322     2233444333 45


Q ss_pred             EEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus       190 tili~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        190 TVIVA-THDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             EEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            67777 899887754 33 899999999988776543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.80  E-value=5.2e-21  Score=191.34  Aligned_cols=219  Identities=16%  Similarity=0.166  Sum_probs=133.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++....                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~~~~~~~l------------------~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G--   58 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGC------------------RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR----LAPDHG--   58 (253)
T ss_pred             eEEEeeeEEEeCCceEe------------------ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            45677777776542222                  235677889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEE---EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cC-Cc
Q psy16304        232 RARVEYGNKYE---VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HL-PL  305 (537)
Q Consensus       232 ~~~i~i~g~~~---i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l-~~  305 (537)
                        +|.++| ..   +.+.+. ........+...+++++|++........   .+.+       ++...+....  .. ..
T Consensus        59 --~i~~~g-~~~~~~~~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~~~---~~~~-------~i~~~~~~~~~~~~~~~  124 (253)
T TIGR02323        59 --TATYIM-RSGAELELYQL-SEAERRRLMRTEWGFVHQNPRDGLRMRV---SAGA-------NIGERLMAIGARHYGNI  124 (253)
T ss_pred             --EEEEec-ccccccccccC-CHHHHHHhhhcceEEEEeCcccccCccc---cHHH-------HHHHHHHHhcccchHHH
Confidence              888876 22   101111 0011111223568999998642111000   0000       0000000000  00 00


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~  378 (537)
                      .......+..+|+........+..|||||+||+    +++++++. +  |+++++|  |+|++...     .++..+.++
T Consensus       125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~  197 (253)
T TIGR02323       125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL----QIARNLVT-R--PRLVFMDEPTGGLDVSVQARLLDLLRGLVRD  197 (253)
T ss_pred             HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence            111223344566643223445889999999999    99999996 5  8999999  99994332     222333333


Q ss_pred             CCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        379 VSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus       198 ~~~tii~v-sH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~  236 (253)
T TIGR02323       198 LGLAVIIV-THDLGVARLLAQRLLVMQQGRVVESGLTDQV  236 (253)
T ss_pred             cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence            34567777 788887764 33 888999999887776655

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.80  E-value=7.1e-21  Score=184.75  Aligned_cols=182  Identities=16%  Similarity=0.125  Sum_probs=119.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+..     ..    .+...+++++
T Consensus        17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~-----~~----~~~~~i~~~~   78 (208)
T cd03268          17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL----IKPDSG----EITFDG-KSYQK-----NI----EALRRIGALI   78 (208)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-Ccccc-----hH----HHHhhEEEec
Confidence            345677889999999999999999999999999    899999    888887 33211     01    1235689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |++.+++..+..     +       ++....... .. ...+....+..+|+.... ...+.+|||||+||+    ++++
T Consensus        79 q~~~~~~~~tv~-----e-------~l~~~~~~~-~~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~  139 (208)
T cd03268          79 EAPGFYPNLTAR-----E-------NLRLLARLL-GI-RKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRL----GIAL  139 (208)
T ss_pred             CCCccCccCcHH-----H-------HHHHHHHhc-CC-cHHHHHHHHHHcCCHHHH-hhhHhhCCHHHHHHH----HHHH
Confidence            987755432220     0       000000000 00 011122233455665443 445889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      +++. +  |+++++|  |+|++..  ..++   ..+.+ .+.+++++ +|+....... + ++++++|+++..
T Consensus       140 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i~~~  207 (208)
T cd03268         140 ALLG-N--PDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKLIEE  207 (208)
T ss_pred             HHhc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEEEec
Confidence            9996 5  8999999  9999333  2222   33333 34566666 8998877653 3 888999987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.2e-20  Score=207.11  Aligned_cols=220  Identities=14%  Similarity=0.068  Sum_probs=140.0

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...+.                  .+++|.+.+|++++|+|+||||||||+++|+|.    ..|++| 
T Consensus         4 ~~l~~~~l~~~~~~~~il------------------~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl----~~p~~G-   60 (510)
T PRK09700          4 PYISMAGIGKSFGPVHAL------------------KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI----HEPTKG-   60 (510)
T ss_pred             ceEEEeeeEEEcCCeEEe------------------eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----cCCCcc-
Confidence            457788888887643222                  335677889999999999999999999999999    899999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                         +|.++| .++..++      .....+..+++++|++.++...+..-.+.+.  ......... ......-....+..
T Consensus        61 ---~i~~~g-~~i~~~~------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~  127 (510)
T PRK09700         61 ---TITINN-INYNKLD------HKLAAQLGIGIIYQELSVIDELTVLENLYIG--RHLTKKVCG-VNIIDWREMRVRAA  127 (510)
T ss_pred             ---EEEECC-EECCCCC------HHHHHHCCeEEEeecccccCCCcHHHHhhhc--ccccccccc-ccccCHHHHHHHHH
Confidence               888887 4432111      1112235689999997755443320000000  000000000 00000000011122


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vI  383 (537)
                      ..+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++....     ++.++.+. +.++
T Consensus       128 ~~l~~~gl~~~~-~~~~~~LSgG~~qrv----~ia~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~ti  198 (510)
T PRK09700        128 MMLLRVGLKVDL-DEKVANLSISHKQML----EIAKTLML-D--AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAI  198 (510)
T ss_pred             HHHHHcCCCCCc-ccchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence            334567776543 555899999999999    99999996 5  8999999  999943322     22343333 4567


Q ss_pred             EEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +++ +||.......+  ++++++|+++..+.+.++
T Consensus       199 iiv-sHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        199 VYI-SHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             EEE-eCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            777 89988876543  899999999887776654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.80  E-value=1.1e-20  Score=214.80  Aligned_cols=280  Identities=14%  Similarity=0.117  Sum_probs=179.8

Q ss_pred             ccccCCcccccccceeeeeeeccch-hhhhHHHHHhhhcccccccccccccccCccccccccCCCCC-CchhHHHHHHHH
Q psy16304         68 FANSIEPIEMVEHKMLRDVVLYNMY-KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA-PTFEVCIVSLLV  145 (537)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~  145 (537)
                      +.+.+.+-++++         ++.+ .....|+..+...+.+++....+++++.++++.+....... ++...       
T Consensus       388 ~~g~it~G~lia---------~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~-------  451 (694)
T TIGR01846       388 IGGALSPGQLVA---------FNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE-------  451 (694)
T ss_pred             HcCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC-------
Confidence            455666666655         3443 45678999999999999999999999999987543321110 00000       


Q ss_pred             HHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc
Q psy16304        146 HLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV  225 (537)
Q Consensus       146 ~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~  225 (537)
                         ....+.+++++..|+...   .             .+-.++++.+++|++++|+|+||||||||+++|+|.    +.
T Consensus       452 ---~~~~i~~~~vsf~y~~~~---~-------------~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~----~~  508 (694)
T TIGR01846       452 ---LRGAITFENIRFRYAPDS---P-------------EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL----YT  508 (694)
T ss_pred             ---CCCeEEEEEEEEEcCCCC---c-------------cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CC
Confidence               012356677777664321   0             012345677889999999999999999999999999    99


Q ss_pred             CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---ccc
Q psy16304        226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSA  300 (537)
Q Consensus       226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~  300 (537)
                      |+.|    +|.++| .++..++.       ..+++.+++|+|++.++.. ..+++.+.- +.+.++..+..+..   +.+
T Consensus       509 p~~G----~I~idg-~~i~~~~~-------~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i  576 (694)
T TIGR01846       509 PQHG----QVLVDG-VDLAIADP-------AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFI  576 (694)
T ss_pred             CCCc----eEEECC-EehhhCCH-------HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHH
Confidence            9999    999997 66655443       2344789999999987765 223222111 01111110000000   001


Q ss_pred             CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304        301 THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL  376 (537)
Q Consensus       301 ~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~  376 (537)
                      ..++....     ..+|..       ...|||||+||+    ++||+++. +  |++++||  |++++..  ..+++.+.
T Consensus       577 ~~lp~gl~-----t~i~~~-------g~~LSgGq~qri----~lARall~-~--~~ililDEpts~LD~~~~~~i~~~l~  637 (694)
T TIGR01846       577 SELPQGYN-----TEVGEK-------GANLSGGQRQRI----AIARALVG-N--PRILIFDEATSALDYESEALIMRNMR  637 (694)
T ss_pred             HhCcCccC-----cEecCC-------CCCCCHHHHHHH----HHHHHHHh-C--CCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            11110000     022221       345999999999    99999996 5  8999999  9999433  33334433


Q ss_pred             hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      +. .+.+++++ +|+......++ ++++++|+++..|+.+++.+
T Consensus       638 ~~~~~~t~i~i-tH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       638 EICRGRTVIII-AHRLSTVRACDRIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             HHhCCCEEEEE-eCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            32 24566777 78888777666 89999999999998887743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=9.1e-21  Score=196.07  Aligned_cols=223  Identities=12%  Similarity=0.070  Sum_probs=139.4

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+..... +            ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|++|
T Consensus        19 ~~~l~~~nl~~~y~~~~~~-~------------~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl----~~p~~G   81 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQEN-E------------LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL----IKSKYG   81 (320)
T ss_pred             CceEEEEeEEEEeCCCCcc-c------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC
Confidence            4567888998887532100 0            0123456677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEe-e------cC-CC-chhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCccccc
Q psy16304        230 FNRARVEYGNKYEVFLY-D------LG-GS-EDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT  298 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~-D------~~-G~-~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~  298 (537)
                          +|.++| ..+.-. .      .. .. ......+++.++++||++.  ++.. +.     .+       ++.....
T Consensus        82 ----~I~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv-----~e-------ni~~~~~  143 (320)
T PRK13631         82 ----TIQVGD-IYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TI-----EK-------DIMFGPV  143 (320)
T ss_pred             ----eEEECC-EEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hH-----HH-------HHHhhHH
Confidence                999987 443210 0      00 00 0011234477999999863  3321 11     00       0000000


Q ss_pred             --ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----
Q psy16304        299 --SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----  369 (537)
Q Consensus       299 --~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----  369 (537)
                        .........+....+..+|+...-....+.+|||||+||+    +++++++. +  |++++||  |+|++...     
T Consensus       144 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv----aiAraL~~-~--p~iLLLDEPtsgLD~~~~~~l~  216 (320)
T PRK13631        144 ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV----AIAGILAI-Q--PEILIFDEPTAGLDPKGEHEMM  216 (320)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCccCCCHHHHHHHH
Confidence              0000000111223344567752112344789999999999    99999996 5  8999999  99994332     


Q ss_pred             HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        370 TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       370 ~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+..+.++ +.+++++ +|+.+.... ++ ++++++|+++..|++.++
T Consensus       217 ~~L~~l~~~-g~Tiiiv-tHd~~~~~~~adri~vl~~G~i~~~g~~~~~  263 (320)
T PRK13631        217 QLILDAKAN-NKTVFVI-THTMEHVLEVADEVIVMDKGKILKTGTPYEI  263 (320)
T ss_pred             HHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            222333333 4567777 899886643 33 999999999999888766

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.80  E-value=7.9e-21  Score=184.75  Aligned_cols=182  Identities=15%  Similarity=0.144  Sum_probs=115.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+..++       ...++..+++++
T Consensus        18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~   81 (211)
T cd03225          18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL----LGPTSG----EVLVDG-KDLTKLS-------LKELRRKVGLVF   81 (211)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEcccCC-------HHHHHhhceEEe
Confidence            345677889999999999999999999999999    899999    898887 4442211       112346789999


Q ss_pred             cCCCC-CCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.. +...+.     .+       ++......  .............+..+|+.... ...+..|||||+||+    +
T Consensus        82 q~~~~~~~~~t~-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~  144 (211)
T cd03225          82 QNPDDQFFGPTV-----EE-------EVAFGLENLGLPEEEIEERVEEALELVGLEGLR-DRSPFTLSGGQKQRV----A  144 (211)
T ss_pred             cChhhhcCCCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----H
Confidence            98642 222111     00       00000000  00000001112233356665433 344789999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~  406 (537)
                      ++++++. +  |+++++|  |+|++...     ..+..+.++ +.+++++ +|+.......+  ++++++|+
T Consensus       145 laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~-sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         145 IAGVLAM-D--PDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIV-THDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCC
Confidence            9999996 5  8999999  99994332     223333333 4566666 89988776633  77777663

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=9.6e-21  Score=194.69  Aligned_cols=219  Identities=11%  Similarity=0.075  Sum_probs=136.6

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++++.+.|+...-. .            ..+-..+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|   
T Consensus         3 i~~~~l~~~y~~~~~~-~------------~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl----~~p~~G---   62 (305)
T PRK13651          3 IKVKNIVKIFNKKLPT-E------------LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL----LLPDTG---   62 (305)
T ss_pred             EEEEEEEEEECCCCCc-c------------ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc---
Confidence            5677888877542110 0            0123345677889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEE-------------EeecCCCc----hhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCC
Q psy16304        233 ARVEYGNKYEVF-------------LYDLGGSE----DFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGI  293 (537)
Q Consensus       233 ~~i~i~g~~~i~-------------~~D~~G~~----~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l  293 (537)
                       ++.++| ..+.             .++..+..    .....++..++++||++.  ++. .+     +.+       ++
T Consensus        63 -~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~t-----v~e-------~i  127 (305)
T PRK13651         63 -TIEWIF-KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QT-----IEK-------DI  127 (305)
T ss_pred             -EEEEec-eecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccccc-cc-----HHH-------HH
Confidence             888875 3221             11111100    011223477999999863  111 00     001       00


Q ss_pred             cccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH
Q psy16304        294 PDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF  368 (537)
Q Consensus       294 ~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~  368 (537)
                      ....... ...   ...+....+..+|+........+.+|||||+||+    ++|++++. +  |+++++|  |+|++..
T Consensus       128 ~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrv----alA~aL~~-~--P~lLlLDEPt~~LD~~  199 (305)
T PRK13651        128 IFGPVSM-GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRV----ALAGILAM-E--PDFLVFDEPTAGLDPQ  199 (305)
T ss_pred             HhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHH
Confidence            0000000 000   0112233455677753223455899999999999    99999996 5  8999999  9999322


Q ss_pred             --HHHHH---HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        369 --RTIWK---QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       369 --~~l~~---~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                        ..+++   .+.+. +.+++++ +||++.... ++ ++++++|+++..+.++++
T Consensus       200 ~~~~l~~~l~~l~~~-g~tiiiv-tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~  252 (305)
T PRK13651        200 GVKEILEIFDNLNKQ-GKTIILV-THDLDNVLEWTKRTIFFKDGKIIKDGDTYDI  252 (305)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEE-eeCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence              22333   33332 4566666 888876654 33 899999999998888776

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=6.7e-21  Score=192.47  Aligned_cols=214  Identities=12%  Similarity=0.040  Sum_probs=134.3

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+....                .+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|++|
T Consensus         5 ~~~l~i~~l~~~~~~~~~----------------~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl----~~~~~G   64 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDAS----------------FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI----EKVKSG   64 (269)
T ss_pred             CceEEEEEEEEEcCCCCC----------------cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce
Confidence            445677888887753210                012345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccc--eeeEEeecCcccccCCcccccccCcCCcc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~  306 (537)
                          +|.++| ..+...+       ...++..+++++|++. .+...+.  .+.+...           .. ........
T Consensus        65 ----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~-----------~~-~~~~~~~~  120 (269)
T PRK13648         65 ----EIFYNN-QAITDDN-------FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE-----------NH-AVPYDEMH  120 (269)
T ss_pred             ----EEEECC-EECCcCC-------HHHHHhheeEEEeChHHhcccccHHHHHHhhHH-----------hc-CCCHHHHH
Confidence                899887 4332111       1123467899999874 2222111  0000000           00 00000000


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~  379 (537)
                      ......+..+|+.... ...+..||+||+||+    +++++++. +  |+++++|  |+|++..  ..+   +..+.++.
T Consensus       121 ~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~  192 (269)
T PRK13648        121 RRVSEALKQVDMLERA-DYEPNALSGGQKQRV----AIAGVLAL-N--PSVIILDEATSMLDPDARQNLLDLVRKVKSEH  192 (269)
T ss_pred             HHHHHHHHHcCCchhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            1112223355655433 344789999999999    99999997 5  8999999  9999333  222   33333332


Q ss_pred             CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+++++ +|+......++ ++++++|+++..+..+++
T Consensus       193 ~~tiiiv-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~  229 (269)
T PRK13648        193 NITIISI-THDLSEAMEADHVIVMNKGTVYKEGTPTEI  229 (269)
T ss_pred             CCEEEEE-ecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence            4566666 77777665544 889999999988776655

>KOG0062|consensus

Probab=99.80  E-value=1.5e-20  Score=197.16  Aligned_cols=150  Identities=17%  Similarity=0.152  Sum_probs=111.7

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHS  388 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvds  388 (537)
                      .+..+|++.......+++||||||+|+    ++|||++. +  |++++||  |++++-....| +.|+.....+++++ +
T Consensus       181 ~L~glGFt~emq~~pt~slSGGWrMrl----aLARAlf~-~--pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liV-S  252 (582)
T KOG0062|consen  181 ILAGLGFTPEMQLQPTKSLSGGWRMRL----ALARALFA-K--PDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIV-S  252 (582)
T ss_pred             HHHhCCCCHHHHhccccccCcchhhHH----HHHHHHhc-C--CCEEeecCCcccchhHHHHHHHHHHhhCCceEEEE-e
Confidence            445778877777777899999999999    99999996 5  8999999  99999888888 99999988899999 9


Q ss_pred             CCcchhhhhh--hhhhcCCcEEEEecccch------------hhhhccchhhhhhhhhhHHhhccccccccCCCCCcccc
Q psy16304        389 LSGRPDDRCQ--VYLMSCNCQVYLISAKNL------------SNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSK  454 (537)
Q Consensus       389 hd~~~~~~~~--i~ll~~G~ii~~g~nkdl------------~~~~~~~~~~~~~le~~~~~~~~~~l~~~~~~~~~~~~  454 (537)
                      ||+.+++.++  ++-++.-++-.+-+|.+.            +.+|..+...+..++.+..+|+.+.           ++
T Consensus       253 HDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna-----------~r  321 (582)
T KOG0062|consen  253 HDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNA-----------AR  321 (582)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCc-----------cc
Confidence            9999999988  555556677777777642            1112222223445666667776632           34


Q ss_pred             ccchhhhhccccCcCCCCCc------eeecCc
Q psy16304        455 KKQPRKRKKKVAPLNTDDET------ELSLPP  480 (537)
Q Consensus       455 ~~~~~~r~k~~~~l~~~~~~------~l~fp~  480 (537)
                      +...++|.+.++.+...+.+      .+.||.
T Consensus       322 a~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~  353 (582)
T KOG0062|consen  322 ASSVQSRIKMLGKLPALKSTLIEVLIGFLFPT  353 (582)
T ss_pred             chhHHHHHHHhccCCCCCccceecccceecCC
Confidence            45688999999988654432      367776

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.80  E-value=9e-21  Score=211.66  Aligned_cols=281  Identities=11%  Similarity=0.028  Sum_probs=177.6

Q ss_pred             cccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHH
Q psy16304         67 TFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVH  146 (537)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~  146 (537)
                      .+.+.+.+.++++--        ..+.....|+..++..+..++.+..+++++.++++.+...++..+....       .
T Consensus       265 v~~g~lt~g~~~a~~--------~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-------~  329 (588)
T PRK13657        265 VQKGQLRVGEVVAFV--------GFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-------G  329 (588)
T ss_pred             HHcCCcCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-------C
Confidence            344566666665422        2345677899999999999999888888887777643322111110000       0


Q ss_pred             HHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304        147 LMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  226 (537)
Q Consensus       147 ~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P  226 (537)
                       -....+.+++++..|++..    +             +-.++++.+++|++++|+|+||+|||||+++|+|.    +.|
T Consensus       330 -~~~~~I~~~~vsf~y~~~~----~-------------iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl----~~p  387 (588)
T PRK13657        330 -RVKGAVEFDDVSFSYDNSR----Q-------------GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV----FDP  387 (588)
T ss_pred             -CCCCeEEEEEEEEEeCCCC----c-------------eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC----cCC
Confidence             0012356677777664311    0             12345677889999999999999999999999999    999


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccC
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSAT  301 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~  301 (537)
                      +.|    .+.++| .++..++.       ..+++.+++++|++.++.. ..+++.+.- +.+.++.....+..   +++.
T Consensus       388 ~~G----~I~i~g-~~i~~~~~-------~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~  455 (588)
T PRK13657        388 QSG----RILIDG-TDIRTVTR-------ASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE  455 (588)
T ss_pred             CCC----EEEECC-EEhhhCCH-------HHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence            999    999987 66654443       3344789999999998865 333333221 11111111000000   0011


Q ss_pred             cCCccccCCccEE-EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHH
Q psy16304        302 HLPLVDFRSVPIL-VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYL  376 (537)
Q Consensus       302 ~l~~~~~~~~~L~-llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~  376 (537)
                      .++..      +. .+|..       -..|||||+||+    ++||+++. +  |++++||  |++++.  ...+.+.+.
T Consensus       456 ~lp~g------ldt~i~~~-------g~~LSgGq~QRi----alARall~-~--~~iliLDEpts~LD~~t~~~i~~~l~  515 (588)
T PRK13657        456 RKPDG------YDTVVGER-------GRQLSGGERQRL----AIARALLK-D--PPILILDEATSALDVETEAKVKAALD  515 (588)
T ss_pred             hCccc------ccchhcCC-------CCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            11000      00 12211       235999999999    99999997 5  8999999  999943  333334443


Q ss_pred             hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +. .+.+++++ +|+......++ ++.+++|++...|+.+++.
T Consensus       516 ~~~~~~tvIii-tHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        516 ELMKGRTTFII-AHRLSTVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             HHhcCCEEEEE-EecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            32 24566667 78887777666 8999999999988887774

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=6e-21  Score=194.17  Aligned_cols=214  Identities=13%  Similarity=0.071  Sum_probs=136.7

Q ss_pred             HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304        149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  228 (537)
Q Consensus       149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~  228 (537)
                      .+.++.++++.+.|+...   .             .+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.
T Consensus         2 ~~~~l~i~~l~~~~~~~~---~-------------~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~----~~p~~   61 (282)
T PRK13640          2 KDNIVEFKHVSFTYPDSK---K-------------PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL----LLPDD   61 (282)
T ss_pred             CCceEEEEEEEEEcCCCC---c-------------cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc----cCCCC
Confidence            355677888888775321   0             012345677889999999999999999999999999    88987


Q ss_pred             ---eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC
Q psy16304        229 ---GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       229 ---G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                         |    +|.++| ..+...      .. ...+..+++++|++. .+...+.     .       +++...... ....
T Consensus        62 g~~G----~i~i~g-~~~~~~------~~-~~~~~~ig~v~q~~~~~~~~~tv-----~-------enl~~~~~~-~~~~  116 (282)
T PRK13640         62 NPNS----KITVDG-ITLTAK------TV-WDIREKVGIVFQNPDNQFVGATV-----G-------DDVAFGLEN-RAVP  116 (282)
T ss_pred             CCCc----EEEECC-EECCcC------CH-HHHHhheEEEEECHHHhhccCCH-----H-------HHHHhhHHh-CCCC
Confidence               8    888887 433211      11 112357899999874 2222111     0       000000000 0000


Q ss_pred             c---cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304        305 L---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ  374 (537)
Q Consensus       305 ~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~  374 (537)
                      .   ..+....+..+|+.... ...+..||+||+||+    +++++++. +  |+++++|  |+|++..     ...+..
T Consensus       117 ~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~G~~qrv----~laral~~-~--P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        117 RPEMIKIVRDVLADVGMLDYI-DSEPANLSGGQKQRV----AIAGILAV-E--PKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             HHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            0   01122234456776543 445899999999999    99999997 5  8999999  9999332     233344


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+..+.+++++ +|+......++ ++++++|+++..+.+.++
T Consensus       189 l~~~~g~tvli~-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        189 LKKKNNLTVISI-THDIDEANMADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             HHHhcCCEEEEE-ecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            433324466666 78877665444 889999999998877665

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=8.8e-21  Score=190.06  Aligned_cols=195  Identities=12%  Similarity=0.039  Sum_probs=123.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+..++.       ..+...+++++|
T Consensus        20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q   83 (255)
T PRK11231         20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARL----LTPQSG----TVFLGD-KPISMLSS-------RQLARRLALLPQ   83 (255)
T ss_pred             eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCCc----EEEECC-EEhHHCCH-------HHHhhheEEecc
Confidence            35677889999999999999999999999999    899999    888887 33221111       112356899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      +..++...+.     .|.  ..+. ............  ........+..+|+.... ...+.+|||||+||+    +++
T Consensus        84 ~~~~~~~~tv-----~~~--i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la  150 (255)
T PRK11231         84 HHLTPEGITV-----REL--VAYG-RSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-DRRLTDLSGGQRQRA----FLA  150 (255)
T ss_pred             cCCCCCCccH-----HHH--HHhc-cchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-cCCcccCCHHHHHHH----HHH
Confidence            9765433221     110  0000 000000000000  001122334456765443 445889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++..  .   ..+..+.+. +.+++++ +|+.......+  ++++++|+++..+..+++
T Consensus       151 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        151 MVLAQ-D--TPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTV-LHDLNQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            99997 5  8999999  9999332  2   222333222 4566666 89988766543  889999999877665554

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.1e-20  Score=207.44  Aligned_cols=211  Identities=11%  Similarity=0.032  Sum_probs=138.9

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ce
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TV  228 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~  228 (537)
                      .++.++++.+.|+...+.                  .+++|.+.+|++++|+|+||||||||+++|+|.    ..|  ++
T Consensus         4 ~~l~~~nl~~~~~~~~il------------------~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~   61 (506)
T PRK13549          4 YLLEMKNITKTFGGVKAL------------------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV----YPHGTYE   61 (506)
T ss_pred             ceEEEeeeEEEeCCeEee------------------cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCCC
Confidence            457788888877643222                  335677889999999999999999999999999    775  89


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc--CcCC--
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLP--  304 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~--  304 (537)
                      |    +|.++| ..+..+      .....++..+++++|++.+++..+..            +++...+...  ....  
T Consensus        62 G----~i~~~g-~~~~~~------~~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~  118 (506)
T PRK13549         62 G----EIIFEG-EELQAS------NIRDTERAGIAIIHQELALVKELSVL------------ENIFLGNEITPGGIMDYD  118 (506)
T ss_pred             e----EEEECC-EECCCC------CHHHHHHCCeEEEEeccccCCCCcHH------------HHhhhcccccccCCcCHH
Confidence            9    888887 443211      11122345699999997755443321            0010000000  0000  


Q ss_pred             -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHH
Q psy16304        305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYL  376 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~  376 (537)
                       ...+....+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++...  .   ++..+.
T Consensus       119 ~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~  190 (506)
T PRK13549        119 AMYLRAQKLLAQLKLDINP-ATPVGNLGLGQQQLV----EIAKALNK-Q--ARLLILDEPTASLTESETAVLLDIIRDLK  190 (506)
T ss_pred             HHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence             001122334466776543 455899999999999    99999996 5  8999999  99994332  2   223433


Q ss_pred             hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      + .+.+++++ +|+.......+  ++++++|+++..+...++
T Consensus       191 ~-~~~tvi~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        191 A-HGIACIYI-SHKLNEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             H-CCCEEEEE-eCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence            3 24566676 89988876543  899999999888877655

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=8.6e-21  Score=193.83  Aligned_cols=197  Identities=14%  Similarity=0.095  Sum_probs=127.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+.....   .......+..++++|
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~   91 (290)
T PRK13634         24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL----LQPTSG----TVTIGE-RVITAGKK---NKKLKPLRKKVGIVF   91 (290)
T ss_pred             eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc---cchHHHHHhhEEEEe
Confidence            456678889999999999999999999999999    999999    999987 44321100   001122336799999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |++.  ++. .+.     .+       ++.....  ..............+..+|+........+.+|||||+||+    
T Consensus        92 q~~~~~l~~-~tv-----~e-------ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv----  154 (290)
T PRK13634         92 QFPEHQLFE-ETV-----EK-------DICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV----  154 (290)
T ss_pred             eCchhhhhh-hhH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH----
Confidence            9863  221 111     00       0000000  0000000012233344677753222445899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n  413 (537)
                      +++++++. +  |+++++|  |+|++...  .   ++..+.++.+.+|+++ +|+....... + ++++++|+++..+..
T Consensus       155 ~lAraL~~-~--P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv~~l~~G~i~~~g~~  230 (290)
T PRK13634        155 AIAGVLAM-E--PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTP  230 (290)
T ss_pred             HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999996 5  8999999  99993332  2   2334434334567777 8998876543 3 899999999988876


Q ss_pred             cch
Q psy16304        414 KNL  416 (537)
Q Consensus       414 kdl  416 (537)
                      .++
T Consensus       231 ~~~  233 (290)
T PRK13634        231 REI  233 (290)
T ss_pred             HHH
Confidence            665

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.79  E-value=9.2e-21  Score=191.29  Aligned_cols=220  Identities=16%  Similarity=0.079  Sum_probs=135.6

Q ss_pred             hhcccccCCCcccCCCCCC-CCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        151 ILMGIQNVPNFQTSSVLSD-DPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .++.++++.+.|+...-.. ...          ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|++|
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl----~~p~~G   68 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQT----------VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM----IEPTSG   68 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccc----------cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCCC
Confidence            3567888888875321000 000          0123455678889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCccccc---ccCcCC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT---SATHLP  304 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~---~~~~l~  304 (537)
                          +|.++| ..+....       .......+++++|++.  +++..+.     .+       .+...+.   ......
T Consensus        69 ----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q~~~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~  124 (267)
T PRK15112         69 ----ELLIDD-HPLHFGD-------YSYRSQRIRMIFQDPSTSLNPRQRI-----SQ-------ILDFPLRLNTDLEPEQ  124 (267)
T ss_pred             ----EEEECC-EECCCCc-------hhhHhccEEEEecCchhhcCcchhH-----HH-------HHHHHHHhccCCCHHH
Confidence                999887 4432110       1122356899999864  1211111     00       0000000   000000


Q ss_pred             ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHh
Q psy16304        305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLG  377 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~  377 (537)
                      ........+..+|+........+.+||+||+||+    +++++++. +  |++++||  |+|++...  .+   +.++.+
T Consensus       125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  197 (267)
T PRK15112        125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL----GLARALIL-R--PKVIIADEALASLDMSMRSQLINLMLELQE  197 (267)
T ss_pred             HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH----HHHHHHHh-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            0011223344566632223445789999999999    99999996 5  8999999  99994332  22   233333


Q ss_pred             cCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        378 TVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+.+++++ +|+....... + ++++++|+++..+...++
T Consensus       198 ~~g~tviiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  237 (267)
T PRK15112        198 KQGISYIYV-TQHLGMMKHISDQVLVMHQGEVVERGSTADV  237 (267)
T ss_pred             HcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            334567777 8888877653 3 888999999877766555

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.5e-20  Score=176.74  Aligned_cols=215  Identities=14%  Similarity=0.126  Sum_probs=139.0

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--  227 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--  227 (537)
                      ...+.++++..+||......+                  +++.+.++.+.+|+||+||||||||++|...    ....  
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~------------------i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm----ndl~~~   62 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKD------------------INLDIPKNKVTALIGPSGCGKSTLLRCLNRM----NDLIPG   62 (253)
T ss_pred             cceeEecceeEEECchhhhcc------------------CceeccCCceEEEECCCCcCHHHHHHHHHhh----cccCcC
Confidence            345677889999887665555                  3466779999999999999999999999987    4433  


Q ss_pred             ---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcC
Q psy16304        228 ---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHL  303 (537)
Q Consensus       228 ---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l  303 (537)
                         .|    +|.++| .++..++.   .  -..+++.+|+|||.+..|+. ..+++.+..-     ...+..  ..+   
T Consensus        63 ~r~~G----~v~~~g-~ni~~~~~---d--~~~lRr~vGMVFQkPnPFp~SIydNVayG~r-----~~g~~~--~~l---  122 (253)
T COG1117          63 ARVEG----EVLLDG-KNIYDPKV---D--VVELRRRVGMVFQKPNPFPMSIYDNVAYGLR-----LHGIKD--KEL---  122 (253)
T ss_pred             ceEEE----EEEECC-eeccCCCC---C--HHHHHHHheeeccCCCCCCchHHHHHHHhHH-----hhccch--HHH---
Confidence               46    888886 55544322   1  12334889999999997763 2222222111     000110  000   


Q ss_pred             CccccCCccEEEeccCccCccch---hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh
Q psy16304        304 PLVDFRSVPILVLGLDNAGKSSI---IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG  377 (537)
Q Consensus       304 ~~~~~~~~~L~llGl~~~gKs~l---i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~  377 (537)
                        ....+..+...++++.-|+.+   ...|||||+||+    .+||++.. +  |+++++|  |+.++-+...- +++..
T Consensus       123 --deiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL----cIARalAv-~--PeVlLmDEPtSALDPIsT~kIEeLi~  193 (253)
T COG1117         123 --DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL----CIARALAV-K--PEVLLMDEPTSALDPISTLKIEELIT  193 (253)
T ss_pred             --HHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH----HHHHHHhc-C--CcEEEecCcccccCchhHHHHHHHHH
Confidence              001111222233333322222   456999999999    99999987 5  8999999  88885443322 33322


Q ss_pred             c--CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        378 T--VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       378 ~--~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +  .+-+|+++ +|++.-+..+.  .+++..|+++.++..+.+
T Consensus       194 eLk~~yTIviV-THnmqQAaRvSD~taFf~~G~LvE~g~T~~i  235 (253)
T COG1117         194 ELKKKYTIVIV-THNMQQAARVSDYTAFFYLGELVEFGPTDKI  235 (253)
T ss_pred             HHHhccEEEEE-eCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence            1  34466666 78888777665  899999999999988877

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.79  E-value=1.4e-20  Score=206.29  Aligned_cols=210  Identities=12%  Similarity=0.068  Sum_probs=139.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+.                  .++++.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         4 ~i~~~~l~~~~~~~~~l------------------~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~G--   59 (501)
T PRK10762          4 LLQLKGIDKAFPGVKAL------------------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGI----YTRDAG--   59 (501)
T ss_pred             eEEEeeeEEEeCCeEEe------------------eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            56788888877543222                  234677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCC---c
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLP---L  305 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~---~  305 (537)
                        +|.++| ..+...     .. ....+..+++++|++.+++..+..            +++......   ...+.   .
T Consensus        60 --~i~~~g-~~~~~~-----~~-~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~  118 (501)
T PRK10762         60 --SILYLG-KEVTFN-----GP-KSSQEAGIGIIHQELNLIPQLTIA------------ENIFLGREFVNRFGRIDWKKM  118 (501)
T ss_pred             --EEEECC-EECCCC-----CH-HHHHhCCEEEEEcchhccCCCcHH------------HHhhhccccccccCccCHHHH
Confidence              888887 433211     11 112235689999997655443221            001000000   00000   0


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~  378 (537)
                      ..+....+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++..  ..+   +..+.+ 
T Consensus       119 ~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-  189 (501)
T PRK10762        119 YAEADKLLARLNLRFSS-DKLVGELSIGEQQMV----EIAKVLSF-E--SKVIIMDEPTDALTDTETESLFRVIRELKS-  189 (501)
T ss_pred             HHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-
Confidence            01122334567776554 455899999999999    99999996 5  8999999  9999433  222   234433 


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+++++ +||.......+  ++++++|+++..+..+++
T Consensus       190 ~~~tvii~-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        190 QGRGIVYI-SHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             CCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            34566666 89988876544  899999999888776654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=7.4e-21  Score=190.78  Aligned_cols=183  Identities=17%  Similarity=0.168  Sum_probs=119.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++.     .   ..    ..+++++|
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~-----~---~~----~~~~~v~q   77 (255)
T PRK11248         19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGF----VPYQHG----SITLDG-KPVE-----G---PG----AERGVVFQ   77 (255)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECC-----C---CC----CcEEEEeC
Confidence            45677889999999999999999999999999    999999    888887 4331     1   11    23788999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.+++..+..            +++..... .....   ...+....+..+|+.... ...+.+|||||+||+    ++
T Consensus        78 ~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrl----~l  139 (255)
T PRK11248         78 NEGLLPWRNVQ------------DNVAFGLQ-LAGVEKMQRLEIAHQMLKKVGLEGAE-KRYIWQLSGGQRQRV----GI  139 (255)
T ss_pred             CCccCCCCcHH------------HHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHH----HH
Confidence            87655432220            00000000 00000   001122334466776543 345899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc--CCcEEEEecc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS--CNCQVYLISA  413 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~--~G~ii~~g~n  413 (537)
                      +++++. +  |+++++|  |+|++..  ..++   ..+.+..+.+++++ +|+.......+  +++++  +|+++..+..
T Consensus       140 aral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        140 ARALAA-N--PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI-THDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999996 5  8999999  9999332  2222   33323334566777 89988776544  77887  5888776554

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.3e-20  Score=199.02  Aligned_cols=254  Identities=14%  Similarity=0.119  Sum_probs=166.7

Q ss_pred             hcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccc
Q psy16304        104 KNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRV  183 (537)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
                      .++..+.+-.++..|+.++.+++.....|.++++.          .+..+.++|++..|.+.+.                
T Consensus       298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~----------~~~~l~~~~vsF~y~~~~~----------------  351 (573)
T COG4987         298 GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTAT----------TGQALELRNVSFTYPGQQT----------------  351 (573)
T ss_pred             hhHHHhhHHHHHHHHHhhhccCCcccCCCccccCC----------ccceeeeccceeecCCCcc----------------
Confidence            44555556667777888887766655444222222          0115567777776654331                


Q ss_pred             cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      .+-.+++|.+++||+++|+|++|||||||+..|.|.    +.|++|    ++..+| .++.-++.       .-+++.++
T Consensus       352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~----~~~~~G----~i~~~g-~~~~~l~~-------~~~~e~i~  415 (573)
T COG4987         352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA----WDPQQG----SITLNG-VEIASLDE-------QALRETIS  415 (573)
T ss_pred             chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc----cCCCCC----eeeECC-cChhhCCh-------hhHHHHHh
Confidence            123456688999999999999999999999999999    999999    898887 55544443       22347899


Q ss_pred             ccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCcc--ccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304        264 TVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV--DFRSVPILVLGLDNAGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       264 ~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~--~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs  339 (537)
                      ++.|...+|.. ..+++.+.-. ++.+   ++++.++..+ +...  ...+-.-..+|..+.       .|||||++|+ 
T Consensus       416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDE---el~~aL~qvg-L~~l~~~~p~gl~t~lge~G~-------~LSGGE~rRL-  483 (573)
T COG4987         416 VLTQRVHLFSGTLRDNLRLANPDASDE---ELWAALQQVG-LEKLLESAPDGLNTWLGEGGR-------RLSGGERRRL-  483 (573)
T ss_pred             hhccchHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHcC-HHHHHHhChhhhhchhccCCC-------cCCchHHHHH-
Confidence            99999887765 3333322111 1111   1222222111 1000  011111224554443       3999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA  413 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n  413 (537)
                         ++||.+++ +  .++.+||  |.|++.  .+++.+.+.+.. +.+++++ +|.....+.++ ++++++|+++..|.+
T Consensus       484 ---AlAR~LL~-d--apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v-THrL~~le~~drIivl~~Gkiie~G~~  556 (573)
T COG4987         484 ---ALARALLH-D--APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV-THRLRGLERMDRIIVLDNGKIIEEGTH  556 (573)
T ss_pred             ---HHHHHHHc-C--CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE-ecccccHhhcCEEEEEECCeeeecCCH
Confidence               99999998 6  7999999  999943  344555555443 4467777 78888888777 999999999999998


Q ss_pred             cchhh
Q psy16304        414 KNLSN  418 (537)
Q Consensus       414 kdl~~  418 (537)
                      .++..
T Consensus       557 ~~Ll~  561 (573)
T COG4987         557 AELLA  561 (573)
T ss_pred             Hhhhc
Confidence            88753

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.79  E-value=6.8e-21  Score=185.30  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+| +++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+...     .   ..++..+++++
T Consensus        17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~---~~~~~~i~~~~   78 (211)
T cd03264          17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL----TPPSSG----TIRIDG-QDVLKQ-----P---QKLRRRIGYLP   78 (211)
T ss_pred             cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-Cccccc-----h---HHHHhheEEec
Confidence            3456778789 9999999999999999999999    999999    888887 333211     1   12346789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+..     +       ++...  +...............+..+|+.... ...+.+|||||+||+    ++
T Consensus        79 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  141 (211)
T cd03264          79 QEFGVYPNFTVR-----E-------FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRV----GI  141 (211)
T ss_pred             CCCcccccCCHH-----H-------HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-hCchhhCCHHHHHHH----HH
Confidence            998765432220     0       00000  00000000001112234456665443 445899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++....     .++.+.+  +.+++++ +|+....... + ++++++|+++..
T Consensus       142 a~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~g~i~~~  210 (211)
T cd03264         142 AQALVG-D--PSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILS-THIVEDVESLCNQVAVLNKGKLVFE  210 (211)
T ss_pred             HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-cCCHHHHHHhCCEEEEEECCEEEec
Confidence            999996 5  8999999  999943322     2333332  3667777 8998887643 3 888999987653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=8.7e-21  Score=192.72  Aligned_cols=212  Identities=12%  Similarity=0.078  Sum_probs=136.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++++.|+...    .           ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|  
T Consensus         4 ~l~~~~l~~~~~~~~----~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G--   62 (279)
T PRK13650          4 IIEVKNLTFKYKEDQ----E-----------KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL----LEAESG--   62 (279)
T ss_pred             eEEEEeEEEEcCCCC----c-----------CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc--
Confidence            466788888775321    0           0022345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~  307 (537)
                        +|.++| ..+...   ...    ..+..+++++|++. .+...+.     .+       ++....... +..   ...
T Consensus        63 --~i~~~g-~~i~~~---~~~----~~~~~i~~v~q~~~~~~~~~tv-----~e-------ni~~~~~~~-~~~~~~~~~  119 (279)
T PRK13650         63 --QIIIDG-DLLTEE---NVW----DIRHKIGMVFQNPDNQFVGATV-----ED-------DVAFGLENK-GIPHEEMKE  119 (279)
T ss_pred             --EEEECC-EECCcC---cHH----HHHhhceEEEcChHHhcccccH-----HH-------HHHhhHHhC-CCCHHHHHH
Confidence              999887 443211   111    12367999999863 2222111     00       000000000 000   001


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~  380 (537)
                      +....+..+|+.+.. ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  ..++   ..+.++.+
T Consensus       120 ~~~~~l~~~gL~~~~-~~~~~~LSgGq~qrv----~lAral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g  191 (279)
T PRK13650        120 RVNEALELVGMQDFK-EREPARLSGGQKQRV----AIAGAVAM-R--PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ  191 (279)
T ss_pred             HHHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            122334466776543 455889999999999    99999997 5  8999999  9999322  2233   34433334


Q ss_pred             EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +|+......++ ++++++|+++..+...++
T Consensus       192 ~tiliv-tH~~~~~~~~dri~~l~~G~i~~~g~~~~~  227 (279)
T PRK13650        192 MTVISI-THDLDEVALSDRVLVMKNGQVESTSTPREL  227 (279)
T ss_pred             CEEEEE-ecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            566666 78877765444 899999999888877665

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.3e-20  Score=187.16  Aligned_cols=197  Identities=15%  Similarity=0.088  Sum_probs=125.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+....... ......++..+++++|
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~~~-~~~~~~~~~~i~~~~q   89 (242)
T PRK11124         20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLL----EMPRSG----TLNIAG-NHFDFSKTPS-DKAIRELRRNVGMVFQ   89 (242)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Eecccccccc-hhhHHHHHhheEEEec
Confidence            45677889999999999999999999999999    899999    899887 4331110000 0011223367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcc-cccccCcC--CccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSATHL--PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~~l--~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.++...+..            +++.. ........  .........+..+|+.... ...+..|||||+||+    ++
T Consensus        90 ~~~~~~~~tv~------------e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~l  152 (242)
T PRK11124         90 QYNLWPHLTVQ------------QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRV----AI  152 (242)
T ss_pred             CccccCCCcHH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence            98765443220            00000 00000000  0001112233456765443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHHH--H---HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFRT--I---WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~~--l---~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |+++++|  |+|++....  +   +..+.+ .+.+++++ +|+...... ++ ++++++|+++..+...+
T Consensus       153 aral~~-~--p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        153 ARALMM-E--PQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIV-THEVEVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             HHHHhc-C--CCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999996 5  8999999  999943322  2   233322 24566666 888887754 33 88899999987765544


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       228 ~  228 (242)
T PRK11124        228 F  228 (242)
T ss_pred             h
Confidence            3

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.79  E-value=2.4e-20  Score=181.48  Aligned_cols=183  Identities=16%  Similarity=0.115  Sum_probs=120.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+..+     ...    +..+++++|
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~q   77 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF----ETPQSG----RVLING-VDVTAA-----PPA----DRPVSMLFQ   77 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcCcC-----CHh----HccEEEEec
Confidence            34677889999999999999999999999999    999999    888887 443211     111    256899999


Q ss_pred             CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.+++..+.  .+.+...          .... ... ....+....+..+|+.... ...+.+||+||+||+    +++
T Consensus        78 ~~~~~~~~tv~enl~~~~~----------~~~~-~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~ia  140 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLS----------PGLK-LTA-EDRQAIEVALARVGLAGLE-KRLPGELSGGERQRV----ALA  140 (211)
T ss_pred             ccccCCCCcHHHHHhcccc----------cccC-ccH-HHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHH----HHH
Confidence            9876544222  1100000          0000 000 0011122334456665443 445889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                      ++++. +  |+++++|  |+|++..     ...+..+.++.+.+++++ +|+....... + ++++++|+++.
T Consensus       141 ~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         141 RVLVR-D--KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEee
Confidence            99996 5  8999999  9998332     223333333334567777 8998877653 3 88899998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.79  E-value=1.2e-20  Score=209.69  Aligned_cols=280  Identities=15%  Similarity=0.062  Sum_probs=175.4

Q ss_pred             ccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHH
Q psy16304         68 FANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHL  147 (537)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~  147 (537)
                      +.+.+.+-++++=.        -.+...++|+..+...+.+++....+++++.++++.+...+....+.+-         
T Consensus       264 ~~g~lt~g~l~a~~--------~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~---------  326 (571)
T TIGR02203       264 QAGSLTAGDFTAFI--------TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---------  326 (571)
T ss_pred             HcCCCCHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Confidence            34555555554432        2345568999999999999999999999998888744332111100000         


Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  227 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt  227 (537)
                       ...-+.+++++..|++..   .             ..-.++++.+++|++++|+|+||+|||||+++|+|.    +.|+
T Consensus       327 -~~~~i~~~~v~f~y~~~~---~-------------~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl----~~~~  385 (571)
T TIGR02203       327 -ARGDVEFRNVTFRYPGRD---R-------------PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF----YEPD  385 (571)
T ss_pred             -CCCeEEEEEEEEEcCCCC---C-------------ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc----cCCC
Confidence             011245666666553211   0             112346678889999999999999999999999999    9999


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccc---cccC
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDEL---TSAT  301 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l---~~~~  301 (537)
                      .|    +|.++| .++..++.       ..+++.+++++|++.++.. ..+++.+.-  +.+.++..++.+..   +.+.
T Consensus       386 ~G----~I~i~g-~~i~~~~~-------~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~  453 (571)
T TIGR02203       386 SG----QILLDG-HDLADYTL-------ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD  453 (571)
T ss_pred             CC----eEEECC-EeHHhcCH-------HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence            99    999987 65544433       2234789999999998765 333332211  11111111110000   0011


Q ss_pred             cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh
Q psy16304        302 HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG  377 (537)
Q Consensus       302 ~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~  377 (537)
                      +++...+     ..+|..       -..|||||+||+    +++|+++. +  |++++||  |++++....  +.+.+.+
T Consensus       454 ~lp~gld-----t~i~~~-------g~~LSgGqrQRi----aLARall~-~--~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       454 KLPLGLD-----TPIGEN-------GVLLSGGQRQRL----AIARALLK-D--APILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             hCcCccc-----ceecCC-------CCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            1110000     022222       234999999999    99999996 5  8999999  999943332  3333333


Q ss_pred             c-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        378 T-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       378 ~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      . .+.+++++ +|+......++ ++.+++|++...|+..++.
T Consensus       515 ~~~~~tiIii-tH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       515 LMQGRTTLVI-AHRLSTIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             HhCCCEEEEE-ehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            2 23466666 78877766665 8889999999888887763

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.79  E-value=8.9e-21  Score=186.59  Aligned_cols=197  Identities=17%  Similarity=0.157  Sum_probs=122.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+.                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         7 ~i~~~~l~~~~~~~~il------------------~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G--   62 (225)
T PRK10247          7 LLQLQNVGYLAGDAKIL------------------NNISFSLRAGEFKLITGPSGCGKSTLLKIVASL----ISPTSG--   62 (225)
T ss_pred             eEEEeccEEeeCCceee------------------eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC--
Confidence            46677888876533222                  335677889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        ++.++| ..+...+.   .    ..+..+++++|++.++.. +.     .+       ++..................
T Consensus        63 --~i~~~g-~~~~~~~~---~----~~~~~i~~~~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~  119 (225)
T PRK10247         63 --TLLFEG-EDISTLKP---E----IYRQQVSYCAQTPTLFGD-TV-----YD-------NLIFPWQIRNQQPDPAIFLD  119 (225)
T ss_pred             --eEEECC-EEcCcCCH---H----HHHhccEEEecccccccc-cH-----HH-------HHHhHHhhcCCChHHHHHHH
Confidence              888887 43321111   1    123678999999775432 11     01       00000000000000011123


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIl  384 (537)
                      .+..+|+........+.+||+|++||+    +++++++. +  |+++++|  |+|++..     ...+..+.++.+.+++
T Consensus       120 ~l~~~~l~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi  192 (225)
T PRK10247        120 DLERFALPDTILTKNIAELSGGEKQRI----SLIRNLQF-M--PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVL  192 (225)
T ss_pred             HHHHcCCChHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            344566643222445889999999999    99999997 5  8999999  9999332     2223344333345666


Q ss_pred             EEeCCCcchhhhhh-hhhhc
Q psy16304        385 VSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       385 Vvdshd~~~~~~~~-i~ll~  403 (537)
                      ++ +|+......++ +++++
T Consensus       193 i~-sh~~~~~~~~d~i~~l~  211 (225)
T PRK10247        193 WV-THDKDEINHADKVITLQ  211 (225)
T ss_pred             EE-ECChHHHHhCCEEEEEe
Confidence            66 78877665444 55553

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.1e-20  Score=192.60  Aligned_cols=195  Identities=13%  Similarity=0.115  Sum_probs=125.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+.....  ... ....+..+++++
T Consensus        24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~~--~~~-~~~~~~~ig~v~   91 (287)
T PRK13641         24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNAL----LKPSSG----TITIAG-YHITPETG--NKN-LKKLRKKVSLVF   91 (287)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc--cch-HHHHHhceEEEE
Confidence            445677889999999999999999999999999    999999    999987 44321110  001 112335789999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccc--cccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeecc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDEL--TSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l--~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |++.  ++ ..+.     .+       ++....  .....-....+....+..+|+. ... ...+..|||||+||+   
T Consensus        92 q~~~~~~~-~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgGq~qrl---  154 (287)
T PRK13641         92 QFPEAQLF-ENTV-----LK-------DVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-SKSPFELSGGQMRRV---  154 (287)
T ss_pred             eChhhhhc-cchH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-hCCcccCCHHHHHHH---
Confidence            9863  22 1111     01       000000  0000000011122334466775 333 444889999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |+|++...     .++..+.+ .+.+++++ +|+.......+  ++++++|+++..++
T Consensus       155 -~laral~~-~--p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvliv-sH~~~~~~~~~d~v~~l~~G~i~~~g~  228 (287)
T PRK13641        155 -AIAGVMAY-E--PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILV-THNMDDVAEYADDVLVLEHGKLIKHAS  228 (287)
T ss_pred             -HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence             99999997 5  8999999  99993332     22233322 24566666 89988776543  89999999998887


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      +.++
T Consensus       229 ~~~~  232 (287)
T PRK13641        229 PKEI  232 (287)
T ss_pred             HHHH
Confidence            7665

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.6e-20  Score=187.25  Aligned_cols=191  Identities=14%  Similarity=0.077  Sum_probs=123.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-----eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-----VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-----~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+     +|    +|.++| .++....     .....++..+
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~~~~~~G----~i~~~g-~~~~~~~-----~~~~~~~~~i   84 (247)
T TIGR00972        19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRM----NDLVPGVRIEG----KVLFDG-QDIYDKK-----IDVVELRRRV   84 (247)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCCCcCCCCce----EEEECC-EEccccc-----cchHHHHhhe
Confidence            45677889999999999999999999999999    8888     99    999887 4432110     0012234679


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---CccccCCccEEEeccC----ccCccchhhhhcCCCc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL---PLVDFRSVPILVLGLD----NAGKSSIIKRILGEPI  335 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l---~~~~~~~~~L~llGl~----~~gKs~li~~LSgG~r  335 (537)
                      ++++|++.++. .+.     .+       ++..........   .........+..+|+.    .. ....+.+|||||+
T Consensus        85 ~~v~q~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~  150 (247)
T TIGR00972        85 GMVFQKPNPFP-MSI-----YD-------NIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR-LHDSALGLSGGQQ  150 (247)
T ss_pred             EEEecCcccCC-CCH-----HH-------HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH-hhCCcccCCHHHH
Confidence            99999977554 221     01       000000000000   0001112223345554    22 2344789999999


Q ss_pred             eeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304        336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC  406 (537)
Q Consensus       336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~  406 (537)
                      ||+    +++++++. +  |+++++|  |+|++..  .   .++..+.+  ..+++++ +|+....... + ++++++|+
T Consensus       151 qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~  220 (247)
T TIGR00972       151 QRL----CIARALAV-E--PEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIV-THNMQQAARISDRTAFFYDGE  220 (247)
T ss_pred             HHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEE-ecCHHHHHHhCCEEEEEECCE
Confidence            999    99999996 5  8999999  9999433  2   22333333  2566666 8888876543 3 88999999


Q ss_pred             EEEEecccch
Q psy16304        407 QVYLISAKNL  416 (537)
Q Consensus       407 ii~~g~nkdl  416 (537)
                      ++..+.+.++
T Consensus       221 i~~~~~~~~~  230 (247)
T TIGR00972       221 LVEYGPTEQI  230 (247)
T ss_pred             EEEeCCHHHH
Confidence            9888776655

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.2e-20  Score=190.85  Aligned_cols=213  Identities=15%  Similarity=0.115  Sum_probs=132.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...   .             .+-.++++.+.+|++++|+|+||||||||+++|+|.    ..|+.| 
T Consensus         6 ~~l~~~nl~~~~~~~~---~-------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G-   64 (271)
T PRK13632          6 VMIKVENVSFSYPNSE---N-------------NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL----LKPQSG-   64 (271)
T ss_pred             eEEEEEeEEEEcCCCC---c-------------cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc-
Confidence            3567788888764210   0             012345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~  307 (537)
                         +|.++| ..+...+       ...++..+++++|++. .+...+.     .+       ++.....  .........
T Consensus        65 ---~I~~~g-~~i~~~~-------~~~~~~~i~~v~q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~  121 (271)
T PRK13632         65 ---EIKIDG-ITISKEN-------LKEIRKKIGIIFQNPDNQFIGATV-----ED-------DIAFGLENKKVPPKKMKD  121 (271)
T ss_pred             ---eEEECC-EecCcCC-------HHHHhcceEEEEeCHHHhcCcccH-----HH-------HHHhHHHHcCCCHHHHHH
Confidence               899887 4432111       1123367899999863 2222111     00       0000000  000000000


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~  380 (537)
                      .....+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++..  ..++   ..+.++.+
T Consensus       122 ~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~  193 (271)
T PRK13632        122 IIDDLAKKVGMEDYL-DKEPQNLSGGQKQRV----AIASVLAL-N--PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK  193 (271)
T ss_pred             HHHHHHHHcCCHHHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            112233456665443 344789999999999    99999996 5  8999999  9999332  2233   34333333


Q ss_pred             EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +|+......++ ++++++|++...+...++
T Consensus       194 ~tiii~-sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~  229 (271)
T PRK13632        194 KTLISI-THDMDEAILADKVIVFSEGKLIAQGKPKEI  229 (271)
T ss_pred             cEEEEE-EechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence            566666 67776665444 889999999877766554

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.9e-20  Score=187.79  Aligned_cols=197  Identities=11%  Similarity=0.074  Sum_probs=124.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| .++..++.       ..+...+++++
T Consensus        18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~   81 (256)
T TIGR03873        18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA----LRPDAG----TVDLAG-VDLHGLSR-------RARARRVALVE   81 (256)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-EEcccCCH-------HHHhhheEEec
Confidence            345677889999999999999999999999999    999999    899887 44432211       11235689999


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++..+...+.     .+ ...... ....... ...-....+....+..+|+.... ...+.+||+||+||+    +++
T Consensus        82 q~~~~~~~~tv-----~e~l~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la  149 (256)
T TIGR03873        82 QDSDTAVPLTV-----RDVVALGRI-PHRSLWA-GDSPHDAAVVDRALARTELSHLA-DRDMSTLSGGERQRV----HVA  149 (256)
T ss_pred             ccCccCCCCCH-----HHHHHhcch-hhhhhcc-CCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----HHH
Confidence            98753332221     01 000000 0000000 00000001122234456665443 344889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++..     ...+..+.+. ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus       150 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       150 RALAQ-E--PKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAA-LHDLNLAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             HHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            99996 5  8999999  9999322     2233343332 3566666 8998887543 3 899999999887765554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.1e-20  Score=191.40  Aligned_cols=194  Identities=13%  Similarity=0.101  Sum_probs=125.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+..++     . ...+...+++++
T Consensus        19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~-----~-~~~~~~~i~~v~   83 (274)
T PRK13644         19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL----LRPQKG----KVLVSG-IDTGDFS-----K-LQGIRKLVGIVF   83 (274)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EECCccc-----c-HHHHHhheEEEE
Confidence            345677889999999999999999999999999    999999    899887 4432211     1 112346799999


Q ss_pred             cCCCC-CCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.. +...+.     .+       ++......  .............+..+|+.... ...+..||+||+||+    +
T Consensus        84 q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~  146 (274)
T PRK13644         84 QNPETQFVGRTV-----EE-------DLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-HRSPKTLSGGQGQCV----A  146 (274)
T ss_pred             EChhhhcccchH-----HH-------HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-cCCcccCCHHHHHHH----H
Confidence            98642 211111     00       00000000  00000011122234456766543 445899999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++++. +  |+++++|  |+|++..  ..+++.+.  ...+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus       147 laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        147 LAGILTM-E--PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYI-THNLEELHDADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence            9999996 5  8999999  9999432  33333332  2234566666 88888776544 888999999888876665

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.79  E-value=2e-20  Score=208.72  Aligned_cols=264  Identities=14%  Similarity=0.059  Sum_probs=165.0

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      .-..|+..++..+..++.+..+++++.++++.+....++..+...       . -....+.++++...|++..    +  
T Consensus       284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~-------~-~~~~~i~~~~v~~~y~~~~----~--  349 (585)
T TIGR01192       284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL-------P-NVKGAVEFRHITFEFANSS----Q--  349 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC-------C-CCCCeEEEEEEEEECCCCC----c--
Confidence            456799999999999999988999888877644322211111000       0 0012356677777665321    0  


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                                 +-.++++.+++|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++..++.     
T Consensus       350 -----------~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g-~~~~~~~~-----  404 (585)
T TIGR01192       350 -----------GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV----YDPTVG----QILIDG-IDINTVTR-----  404 (585)
T ss_pred             -----------cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC----CCCCCC----EEEECC-EEhhhCCH-----
Confidence                       12345677889999999999999999999999999    999999    999987 55543332     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccccccCcCCccccCCccEE--EeccCccCccchhhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPIL--VLGLDNAGKSSIIKR  329 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~--llGl~~~gKs~li~~  329 (537)
                        ..+++.+++++|++.++.. ..+++.+.. +.+.++   +.+.+... ++      ...+.  .-|+...- ......
T Consensus       405 --~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~---~~~a~~~~-~~------~~~i~~l~~g~~t~~-~~~~~~  471 (585)
T TIGR01192       405 --ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEE---VYEAAKAA-AA------HDFILKRSNGYDTLV-GERGNR  471 (585)
T ss_pred             --HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHH---HHHHHHHh-Cc------HHHHHhccccccchh-cCCCCC
Confidence              2344789999999987654 222221110 000000   00000000 00      00000  11221111 111456


Q ss_pred             hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      |||||+||+    ++|++++. +  |+++++|  |++++..  ..+++.+.+. .+.+++++ +|+.+....++ +++++
T Consensus       472 LSgGq~qrl----~lARall~-~--p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~i-sH~~~~~~~~d~i~~l~  543 (585)
T TIGR01192       472 LSGGERQRL----AIARAILK-N--APILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AHRLSTVRNADLVLFLD  543 (585)
T ss_pred             CCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE-EcChHHHHcCCEEEEEE
Confidence            999999999    99999996 5  8999999  9999433  3333433322 24566666 78887776666 89999


Q ss_pred             CCcEEEEecccchh
Q psy16304        404 CNCQVYLISAKNLS  417 (537)
Q Consensus       404 ~G~ii~~g~nkdl~  417 (537)
                      +|+++..|+.+++.
T Consensus       544 ~G~i~~~g~~~~l~  557 (585)
T TIGR01192       544 QGRLIEKGSFQELI  557 (585)
T ss_pred             CCEEEEECCHHHHH
Confidence            99999888877764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.3e-20  Score=186.36  Aligned_cols=211  Identities=15%  Similarity=0.087  Sum_probs=131.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     |
T Consensus         3 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~   60 (250)
T PRK14247          3 KIEIRDLKVSFGQVEV------------------LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL----IELYPEAR   60 (250)
T ss_pred             eEEEEeeEEEECCeee------------------eecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCCCC
Confidence            3566777776653221                  2345677889999999999999999999999998    76     4


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--c-Cc-
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--A-TH-  302 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~-~~-  302 (537)
                      ++|    +|.++| .++..++   .    ..++..+++++|++.++...+.     .+       ++......  . .. 
T Consensus        61 ~~G----~i~~~g-~~i~~~~---~----~~~~~~i~~v~q~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~  116 (250)
T PRK14247         61 VSG----EVYLDG-QDIFKMD---V----IELRRRVQMVFQIPNPIPNLSI-----FE-------NVALGLKLNRLVKSK  116 (250)
T ss_pred             Cce----EEEECC-EECCcCC---H----HHHhccEEEEeccCccCCCCcH-----HH-------HHHHHHHhccccCCH
Confidence            799    899887 4432111   1    1233678999999765443222     00       00000000  0 00 


Q ss_pred             CCccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHH
Q psy16304        303 LPLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQY  375 (537)
Q Consensus       303 l~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~  375 (537)
                      -.........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++...  .+++.+
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~lllLDEP~~~LD~~~~~~l~~~l  189 (250)
T PRK14247        117 KELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL----CIARALAF-Q--PEVLLADEPTANLDPENTAKIESLF  189 (250)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHH
Confidence            000001112233445432   112444789999999999    99999996 5  8999999  99994332  222322


Q ss_pred             Hh-cCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        376 LG-TVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~-~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+ ..+.+++++ +|+...... ++ ++++++|++...+..+++
T Consensus       190 ~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        190 LELKKDMTIVLV-THFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHhcCCEEEEE-eCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            22 113566666 899887654 33 889999999888777665

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.79  E-value=3.9e-20  Score=170.83  Aligned_cols=216  Identities=14%  Similarity=0.106  Sum_probs=154.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.|.||...+...                  +|+.-.+|+.|.|+|.+|+||||+|+||.-+    ..|+.|  
T Consensus         6 ~l~v~dlHK~~G~~eVLKG------------------vSL~A~~GdVisIIGsSGSGKSTfLRCiN~L----E~P~~G--   61 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKG------------------VSLQANAGDVISIIGSSGSGKSTFLRCINFL----EKPSAG--   61 (256)
T ss_pred             ceehhHHHhhcccchhhcc------------------eeeecCCCCEEEEecCCCCchhHHHHHHHhh----cCCCCc--
Confidence            4567888888887655544                  3466779999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEe-ecCCCc---hhh--HHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc-cccCcC-
Q psy16304        232 RARVEYGNKYEVFLY-DLGGSE---DFR--TIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL-TSATHL-  303 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~-D~~G~~---~~r--~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l-  303 (537)
                        .|.++| ..+... |..|.-   +.+  ...+..+++|||++.++..++.            .+++.+.- ..++.- 
T Consensus        62 --~I~v~g-eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv------------LeNViEaPvhVLg~~k  126 (256)
T COG4598          62 --SIRVNG-EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV------------LENVIEAPVHVLGVSK  126 (256)
T ss_pred             --eEEECC-eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH------------HHHHHhcchHhhcCCH
Confidence              999987 555543 333332   111  3455789999999998877665            22222211 111111 


Q ss_pred             -CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--h---hHHHHHHHH
Q psy16304        304 -PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--E---DFRTIWKQY  375 (537)
Q Consensus       304 -~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~---~~~~l~~~~  375 (537)
                       +...+++..+..+|+.+.. ..++..|||||+||+    ++|+++.. .  |+++++|  |+.+  +   +...+.+++
T Consensus       127 ~ea~e~Ae~~L~kVGi~ek~-~~YP~~LSGGQQQR~----aIARaLam-e--P~vmLFDEPTSALDPElVgEVLkv~~~L  198 (256)
T COG4598         127 AEAIERAEKYLAKVGIAEKA-DAYPAHLSGGQQQRV----AIARALAM-E--PEVMLFDEPTSALDPELVGEVLKVMQDL  198 (256)
T ss_pred             HHHHHHHHHHHHHhCchhhh-hcCccccCchHHHHH----HHHHHHhc-C--CceEeecCCcccCCHHHHHHHHHHHHHH
Confidence             1112334455578887765 578999999999999    99999986 4  8999999  8888  2   333344677


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++.+. +++ +|.+.++.++.  ++++++|.+-..|.|+.+
T Consensus       199 AeEgrTM-v~V-THEM~FAR~Vss~v~fLh~G~iEE~G~P~qv  239 (256)
T COG4598         199 AEEGRTM-VVV-THEMGFARDVSSHVIFLHQGKIEEEGPPEQV  239 (256)
T ss_pred             HHhCCeE-EEE-eeehhHHHhhhhheEEeecceecccCChHHH
Confidence            6666554 444 68888888776  888999999999998876

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=2.5e-20  Score=207.30  Aligned_cols=262  Identities=13%  Similarity=0.106  Sum_probs=163.5

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      .-+.|+..++..+..++....+.+++.++++.+........+...          ....+.++++...|+...       
T Consensus       265 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~----------~~~~I~~~~v~~~y~~~~-------  327 (569)
T PRK10789        265 LMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPE----------GRGELDVNIRQFTYPQTD-------  327 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC----------CCCcEEEEEEEEECCCCC-------
Confidence            456899999999999999999999998888744221111000000          011244555555543210       


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                               ..+-.++++.+++|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++..++.     
T Consensus       328 ---------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~----~~p~~G----~i~~~g-~~~~~~~~-----  384 (569)
T PRK10789        328 ---------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH----FDVSEG----DIRFHD-IPLTKLQL-----  384 (569)
T ss_pred             ---------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----EEEECC-EEHhhCCH-----
Confidence                     0123456688889999999999999999999999999    999999    999987 55433322     


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCccccc---ccCcCCccccCCccEEEeccCccCccchhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDELT---SATHLPLVDFRSVPILVLGLDNAGKSSIIK  328 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l~---~~~~l~~~~~~~~~L~llGl~~~gKs~li~  328 (537)
                        ..+++.+++++|++.++.. ..+++.+.. +.+.++.....+...   .+..++..     .-..+|..       ..
T Consensus       385 --~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g-----l~t~~~~~-------g~  450 (569)
T PRK10789        385 --DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG-----YDTEVGER-------GV  450 (569)
T ss_pred             --HHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCc-----ccceecCC-------CC
Confidence              2345789999999987754 222222110 111111110000000   00000000     00012211       34


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM  402 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll  402 (537)
                      .|||||+||+    ++||+++. +  |+++++|  |++++..  ..+++.+.+. .+.+++++ +|+......++ ++++
T Consensus       451 ~LSgGq~qRi----~lARall~-~--~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~i-tH~~~~~~~~d~i~~l  522 (569)
T PRK10789        451 MLSGGQKQRI----SIARALLL-N--AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS-AHRLSALTEASEILVM  522 (569)
T ss_pred             cCCHHHHHHH----HHHHHHhc-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchhHHHcCCEEEEE
Confidence            5999999999    99999997 5  8999999  9999433  2333433322 23466666 78877776666 8899


Q ss_pred             cCCcEEEEecccchh
Q psy16304        403 SCNCQVYLISAKNLS  417 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~  417 (537)
                      ++|+++..|+.+++.
T Consensus       523 ~~G~i~~~g~~~~l~  537 (569)
T PRK10789        523 QHGHIAQRGNHDQLA  537 (569)
T ss_pred             eCCEEEEecCHHHHH
Confidence            999999999887774

>PLN03232 ABC transporter C family member; Provisional

Probab=99.79  E-value=2.1e-20  Score=227.11  Aligned_cols=265  Identities=15%  Similarity=0.109  Sum_probs=169.3

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCC----CCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDD----PAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD  170 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~  170 (537)
                      ...|+..+...+.+++....+++|+.++++.+.....    ..||-..         -....+.+++++..|+...    
T Consensus      1182 ~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~---------p~~g~I~f~nVsf~Y~~~~---- 1248 (1495)
T PLN03232       1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW---------PSRGSIKFEDVHLRYRPGL---- 1248 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC---------CCCCcEEEEEEEEEECCCC----
Confidence            4457778888888899999999999988875433211    0011000         0012356677777663221    


Q ss_pred             CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                      +            .+-+++++.+++|+++||||++|||||||+++|.|.    ++|+.|    +|.++| +++.-++.  
T Consensus      1249 ~------------~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl----~~p~~G----~I~IdG-~di~~i~~-- 1305 (1495)
T PLN03232       1249 P------------PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI----VELEKG----RIMIDD-CDVAKFGL-- 1305 (1495)
T ss_pred             C------------cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCc----eEEECC-EEhhhCCH--
Confidence            0            123456788889999999999999999999999999    999999    999997 66654443  


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhh
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIK  328 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~  328 (537)
                       ..    +++.+++|+|++.+|.. ..+++-..-+.+.+   ++.+.++..+-.+....-..-+ ..+|..       -.
T Consensus      1306 -~~----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sde---ei~~al~~a~l~~~I~~lp~GLdt~v~e~-------G~ 1370 (1495)
T PLN03232       1306 -TD----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA---DLWEALERAHIKDVIDRNPFGLDAEVSEG-------GE 1370 (1495)
T ss_pred             -HH----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHH---HHHHHHHHcCCHHHHHhCcCCCCceecCC-------CC
Confidence             33    44889999999998764 22222110010111   1111111000000000000000 022222       23


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM  402 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll  402 (537)
                      .||||||||+    ++||+++. +  |++++||  |++++...+  +.+.+.+. .+.+++++ +|...+...++ ++++
T Consensus      1371 ~LSgGQrQrl----aLARALLr-~--~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~I-AHRl~ti~~~DrIlVL 1442 (1495)
T PLN03232       1371 NFSVGQRQLL----SLARALLR-R--SKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVI-AHRLNTIIDCDKILVL 1442 (1495)
T ss_pred             CCCHHHHHHH----HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-eCCHHHHHhCCEEEEE
Confidence            5999999999    99999996 5  8999999  999954433  22333333 34577777 89998888777 9999


Q ss_pred             cCCcEEEEecccchhh
Q psy16304        403 SCNCQVYLISAKNLSN  418 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~~  418 (537)
                      ++|+++..|+++++.+
T Consensus      1443 ~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1443 SSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             ECCEEEEECCHHHHHh
Confidence            9999999999998853

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.79  E-value=2.4e-20  Score=181.56  Aligned_cols=184  Identities=15%  Similarity=0.109  Sum_probs=117.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+.. .    ......++..+++++|
T Consensus        18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~-~----~~~~~~~~~~i~~~~q   83 (213)
T cd03262          18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL----EEPDSG----TIIIDG-LKLTD-D----KKNINELRQKVGMVFQ   83 (213)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCc-c----chhHHHHHhcceEEec
Confidence            45677889999999999999999999999999    899999    899887 43321 0    0011223467999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.+++..+..     +       ++.........+.   ........+..+|+.... ...+.+|||||+|++    ++
T Consensus        84 ~~~~~~~~t~~-----e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  146 (213)
T cd03262          84 QFNLFPHLTVL-----E-------NITLAPIKVKGMSKAEAEERALELLEKVGLADKA-DAYPAQLSGGQQQRV----AI  146 (213)
T ss_pred             ccccCCCCcHH-----H-------HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hhCccccCHHHHHHH----HH
Confidence            98765432220     0       0000000000000   001112233355665433 455889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ  407 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i  407 (537)
                      +++++. +  |+++++|  |+|++...     ..+.++.+ .+.+++++ +|+....... + ++++++|++
T Consensus       147 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         147 ARALAM-N--PKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVV-THEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence            999997 5  8999999  99994332     23333333 23566666 8998877653 3 777877763

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PLN03073 ABC transporter F family; Provisional

Probab=99.79  E-value=1.3e-20  Score=213.21  Aligned_cols=232  Identities=13%  Similarity=0.033  Sum_probs=144.4

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++++.|++..+.                  .+++|.+.+|+++||||+|||||||||++|+|..... .|+.|  
T Consensus       177 ~I~i~nls~~y~~~~ll------------------~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~p~~g--  235 (718)
T PLN03073        177 DIHMENFSISVGGRDLI------------------VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKNC--  235 (718)
T ss_pred             eEEEceEEEEeCCCEEE------------------ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCCCC--
Confidence            56777788777543333                  3456778899999999999999999999999962111 47777  


Q ss_pred             eEEEEECCcEEEEEeecC-------CCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe----e--cCcccccCCcccc
Q psy16304        232 RARVEYGNKYEVFLYDLG-------GSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI----M--CGVHQVSGIPDEL  297 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~-------G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~----D--s~~~~~~~l~~~l  297 (537)
                        +|.+.+ ..+...++.       ............+++++|.+.+... .........    +  ....++..+.+.+
T Consensus       236 --~I~~~~-Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  312 (718)
T PLN03073        236 --QILHVE-QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRL  312 (718)
T ss_pred             --EEEEEe-ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHH
Confidence              555432 111111110       0011112234456777776442211 000000000    0  0001222223333


Q ss_pred             cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HH
Q psy16304        298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQ  374 (537)
Q Consensus       298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~  374 (537)
                      ...+.+....++...+..+|+........+.+|||||++|+    +++++++. +  |++++||  |+|++.....| ..
T Consensus       313 ~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv----~LA~aL~~-~--p~lLlLDEPt~~LD~~~~~~l~~  385 (718)
T PLN03073        313 ELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRI----ALARALFI-E--PDLLLLDEPTNHLDLHAVLWLET  385 (718)
T ss_pred             HhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHH
Confidence            33344444455556677888864334555899999999999    99999996 5  8999999  99996665555 66


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      +++...++++++ +||+.+...++  ++++++|++..+.++.+
T Consensus       386 ~L~~~~~tviiv-sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~  427 (718)
T PLN03073        386 YLLKWPKTFIVV-SHAREFLNTVVTDILHLHGQKLVTYKGDYD  427 (718)
T ss_pred             HHHHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            666666778888 89999887654  89999999987777764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.78  E-value=2.3e-20  Score=187.76  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=136.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---e
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---V  228 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~  228 (537)
                      ++.++++.+.|++...                  ..++++.+.+|++++|+|+||||||||+++|+|.    +.|+   .
T Consensus         4 ~l~~~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~p~~~~~   61 (262)
T PRK09984          4 IIRVEKLAKTFNQHQA------------------LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL----ITGDKSAG   61 (262)
T ss_pred             EEEEeeEEEEeCCeEE------------------EecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCCCCCCc
Confidence            5677888887653222                  2345677889999999999999999999999999    8776   4


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcc-cccccCcCCccc
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSATHLPLVD  307 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~~l~~~~  307 (537)
                      |    +|.++| ..+...+... .. ...++..+++++|++.+++..+..-.+.+.. ... ..... ....... ....
T Consensus        62 G----~i~~~g-~~~~~~~~~~-~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~~-~~~~~~~~~~~~~-~~~~  131 (262)
T PRK09984         62 S----HIELLG-RTVQREGRLA-RD-IRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGS-TPFWRTCFSWFTR-EQKQ  131 (262)
T ss_pred             e----EEEECC-Eecccccccc-hh-HHHHHhheEEEccccccccCCcHHHHHHhhh-ccc-ccchhhhcccccH-HHHH
Confidence            8    888887 4442211000 01 1223467899999987655432210000000 000 00000 0000000 0011


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~  380 (537)
                      +....+..+|+... ....+.+||+||+||+    +++++++. +  |+++++|  |+|++..     ...+..+.++.+
T Consensus       132 ~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g  203 (262)
T PRK09984        132 RALQALTRVGMVHF-AHQRVSTLSGGQQQRV----AIARALMQ-Q--AKVILADEPIASLDPESARIVMDTLRDINQNDG  203 (262)
T ss_pred             HHHHHHHHcCCHHH-HhCCccccCHHHHHHH----HHHHHHhc-C--CCEEEecCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            22334445677543 3455889999999999    99999996 5  8999999  9999332     223334333334


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +|+.......+  ++++++|+++..+...++
T Consensus       204 ~tvii~-tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        204 ITVVVT-LHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             CEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            567777 89988765433  889999999887766554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.78  E-value=1.5e-20  Score=189.79  Aligned_cols=198  Identities=16%  Similarity=0.148  Sum_probs=128.6

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+..++.    .....++..++++
T Consensus        28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~sG----~i~~~g-~~~~~~~~----~~~~~~~~~i~~v   94 (268)
T PRK10419         28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL----ESPSQG----NVSWRG-EPLAKLNR----AQRKAFRRDIQMV   94 (268)
T ss_pred             EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EeccccCh----hHHHHHHhcEEEE
Confidence            3456788889999999999999999999999999    899999    899887 44322211    1111234679999


Q ss_pred             ccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      +|++.  +....+.     .+       .+...+.......   ........+..+|+........+..||+||+||+  
T Consensus        95 ~q~~~~~~~~~~t~-----~~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl--  160 (268)
T PRK10419         95 FQDSISAVNPRKTV-----RE-------IIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV--  160 (268)
T ss_pred             EcChhhccCCCCCH-----HH-------HHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH--
Confidence            99863  2111111     00       0000000000000   0011223344556642222445789999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI  411 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g  411 (537)
                        +++++++. +  |+++++|  |+|++.     ....++.+.+..+.+++++ +|+......++  ++++++|+++..+
T Consensus       161 --~laral~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv-sH~~~~i~~~~d~i~~l~~G~i~~~g  234 (268)
T PRK10419        161 --CLARALAV-E--PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI-THDLRLVERFCQRVMVMDNGQIVETQ  234 (268)
T ss_pred             --HHHHHHhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE-ECCHHHHHHhCCEEEEEECCEEeeeC
Confidence              99999997 5  8999999  999943     3334455544445677777 89988876533  8889999998888


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      .+.++
T Consensus       235 ~~~~~  239 (268)
T PRK10419        235 PVGDK  239 (268)
T ss_pred             Chhhc
Confidence            77665

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.78  E-value=2.7e-20  Score=204.42  Aligned_cols=208  Identities=15%  Similarity=0.100  Sum_probs=137.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+.                  .+++|.+.+|++++|+|+||||||||+++|+|.    +.|++|  
T Consensus        11 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl----~~p~~G--   66 (510)
T PRK15439         11 LLCARSISKQYSGVEVL------------------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI----VPPDSG--   66 (510)
T ss_pred             eEEEEeEEEEeCCceee------------------eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce--
Confidence            56788888877643222                  335677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.++| ..+...     . .....+..+++++|++.++...+..            +++...+.  .......+...
T Consensus        67 --~i~~~g-~~~~~~-----~-~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~--~~~~~~~~~~~  123 (510)
T PRK15439         67 --TLEIGG-NPCARL-----T-PAKAHQLGIYLVPQEPLLFPNLSVK------------ENILFGLP--KRQASMQKMKQ  123 (510)
T ss_pred             --EEEECC-EECCCC-----C-HHHHHhCCEEEEeccCccCCCCcHH------------HHhhcccc--cchHHHHHHHH
Confidence              888887 433211     1 1111224589999997755443321            00000000  00000011223


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HH---HHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IW---KQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~---~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++....  ++   ..+.+. +.+++
T Consensus       124 ~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~aL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii  194 (510)
T PRK15439        124 LLAALGCQLDL-DSSAGSLEVADRQIV----EILRGLMR-D--SRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIV  194 (510)
T ss_pred             HHHHcCCCccc-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence            34456776443 455899999999999    99999996 5  8999999  999943322  22   333333 45666


Q ss_pred             EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++ +||.......+  ++++++|+++..+...++
T Consensus       195 iv-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        195 FI-SHKLPEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             EE-eCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence            66 89988776543  899999999887766554

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.78  E-value=2.5e-20  Score=181.76  Aligned_cols=189  Identities=15%  Similarity=0.109  Sum_probs=120.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+ ++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+.....  .... ...+..+++++|
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~--~~~~-~~~~~~i~~~~q   82 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL----EKPDGG----TIVLNG-TVLFDSRK--KINL-PPQQRKIGLVFQ   82 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-Eecccccc--hhhh-hhHhhcEEEEec
Confidence            45677889 99999999999999999999999    999999    888887 44321110  0011 122367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++...+..     +       ++..............+....+..+|+.... ...+.+|||||+||+    +++++
T Consensus        83 ~~~~~~~~t~~-----~-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~a  145 (214)
T cd03297          83 QYALFPHLNVR-----E-------NLAFGLKRKRNREDRISVDELLDLLGLDHLL-NRYPAQLSGGEKQRV----ALARA  145 (214)
T ss_pred             CCccCCCCCHH-----H-------HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-hcCcccCCHHHHHHH----HHHHH
Confidence            98765432220     0       0000000000000001122234456665433 344789999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                      ++. +  |+++++|  |+|++..  ..+   +.++.++.+.+++++ +|+.......+  ++++++|+++..
T Consensus       146 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~  213 (214)
T cd03297         146 LAA-Q--PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV-THDLSEAEYLADRIVVMEDGRLQYI  213 (214)
T ss_pred             Hhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-ecCHHHHHHhcCEEEEEECCEEEec
Confidence            996 5  8999999  9999333  222   233333334566777 89988776433  888999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.78  E-value=1.3e-20  Score=183.60  Aligned_cols=186  Identities=17%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| .++...+.    .....++..+++++
T Consensus        18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~----~~~~~~~~~i~~v~   84 (214)
T cd03292          18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKE----ELPTSG----TIRVNG-QDVSDLRG----RAIPYLRRKIGVVF   84 (214)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcccCCH----HHHHHHHHheEEEe
Confidence            345677889999999999999999999999999    899999    898887 44322110    11122346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.+++..+..            +++........  .-....+....+..+|+.... ...+.+|||||+||+    ++
T Consensus        85 q~~~~~~~~t~~------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l  147 (214)
T cd03292          85 QDFRLLPDRNVY------------ENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-RALPAELSGGEQQRV----AI  147 (214)
T ss_pred             cCchhccCCcHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHH----HH
Confidence            998765432220            00000000000  000001112233455665443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ  407 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i  407 (537)
                      +++++. +  |+++++|  |+|++..     ...++++.++ +.+++++ +|+....... + ++++++|++
T Consensus       148 aral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         148 ARAIVN-S--PTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVA-THAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence            999996 5  8999999  9999332     2223343333 4566666 8888877653 3 777777753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.78  E-value=2.5e-20  Score=205.55  Aligned_cols=237  Identities=15%  Similarity=0.097  Sum_probs=148.3

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP  173 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~  173 (537)
                      ....|+..+...+++++....+.+++.++++.+....++..+...    ...  .....+.+++++..|++..    +  
T Consensus       282 ~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~----~~~--~~~~~I~~~~vsf~Y~~~~----~--  349 (529)
T TIGR02868       282 AAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAG----ALG--LGKPTLELRDLSFGYPGSP----P--  349 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCc----ccC--CCCceEEEEEEEEecCCCC----c--
Confidence            456788888888899999999999999888754332111111000    000  0012356677777665321    0  


Q ss_pred             chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                                 .-.++++.+++|++++|+|++|||||||+++|+|.    ++|++|    +|.++| .++..+       
T Consensus       350 -----------vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----~~p~~G----~I~i~g-~~i~~~-------  402 (529)
T TIGR02868       350 -----------VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL----LDPLQG----EVTLDG-VSVSSL-------  402 (529)
T ss_pred             -----------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhH-------
Confidence                       12345688889999999999999999999999999    999999    999987 555432       


Q ss_pred             hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhh
Q psy16304        254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIK  328 (537)
Q Consensus       254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~  328 (537)
                       ...+++.+++|+|++.++.. ..+++.+.-+ .+.++..++.+..   +.+..++...     -..+|..+       .
T Consensus       403 -~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gl-----dT~ige~G-------~  469 (529)
T TIGR02868       403 -QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGL-----DTVLGEGG-------A  469 (529)
T ss_pred             -HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccc-----cchhcccc-------C
Confidence             24445889999999998876 4444443211 2222211111110   0111111100     01233222       3


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCC
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLS  390 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd  390 (537)
                      .|||||+||+    ++||+++. +  |++++||  |++++...+  +.+.+.+. .+.+++++ +|+
T Consensus       470 ~LSGGQrQRi----aiARall~-~--~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI-tHr  528 (529)
T TIGR02868       470 RLSGGERQRL----ALARALLA-D--APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI-THH  528 (529)
T ss_pred             cCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-ecC
Confidence            4999999999    99999996 4  8999999  999944433  33444443 23466666 664

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.78  E-value=1.8e-20  Score=185.99  Aligned_cols=199  Identities=13%  Similarity=0.049  Sum_probs=120.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    .  .|++|    +|.++| ..+...+      .....+..+++
T Consensus        17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~   81 (243)
T TIGR01978        17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH----PSYEVTSG----TILFKG-QDLLELE------PDERARAGLFL   81 (243)
T ss_pred             eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCcc----eEEECC-EecCCCC------HHHhhccceEe
Confidence            345677889999999999999999999999998    6  58999    898887 4332111      11111234788


Q ss_pred             cccCCCCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~t  341 (537)
                      ++|++.+++..+..  +.+....    ...... ...........+....+..+|+........+. .|||||+||+   
T Consensus        82 v~q~~~~~~~~t~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl---  153 (243)
T TIGR01978        82 AFQYPEEIPGVSNLEFLRSALNA----RRSARG-EEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN---  153 (243)
T ss_pred             eeccccccCCcCHHHHHHHHHHH----hhcccc-cccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH---
Confidence            99998765433220  0000000    000000 00000000001122334456665322233355 5999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEe
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLI  411 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g  411 (537)
                       +++++++. +  |++++||  |+|++...     ..+..+.+ .+.+++++ +|+.......  + ++++++|+++..+
T Consensus       154 -~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~v-sH~~~~~~~~~~d~i~~l~~G~i~~~g  227 (243)
T TIGR01978       154 -EILQMALL-E--PKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLII-THYQRLLNYIKPDYVHVLLDGRIVKSG  227 (243)
T ss_pred             -HHHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEE-EecHHHHHhhcCCeEEEEeCCEEEEec
Confidence             99999996 5  8999999  99994332     22233332 23566666 8888877653  3 8889999998776


Q ss_pred             ccc
Q psy16304        412 SAK  414 (537)
Q Consensus       412 ~nk  414 (537)
                      ...
T Consensus       228 ~~~  230 (243)
T TIGR01978       228 DVE  230 (243)
T ss_pred             CHH
Confidence            554

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=3.1e-20  Score=188.81  Aligned_cols=218  Identities=15%  Similarity=0.111  Sum_probs=137.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...-...            ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|  
T Consensus         4 ~l~~~~l~~~~~~~~~~~~------------~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G--   65 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTE------------KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL----LIPSEG--   65 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            5678888888753210000            0123345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| ..+.   ...  . ....+..+++++|++........    +.+       ++....... ...   ....
T Consensus        66 --~i~i~g-~~i~---~~~--~-~~~~~~~i~~v~q~~~~~~~~~~----v~~-------~l~~~~~~~-~~~~~~~~~~  124 (280)
T PRK13633         66 --KVYVDG-LDTS---DEE--N-LWDIRNKAGMVFQNPDNQIVATI----VEE-------DVAFGPENL-GIPPEEIRER  124 (280)
T ss_pred             --eEEECC-Eecc---ccc--c-HHHHhhheEEEecChhhhhcccc----HHH-------HHHhhHhhc-CCCHHHHHHH
Confidence              999987 4432   111  0 11223678999998641110000    000       000000000 000   0111


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~  381 (537)
                      ....+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..  .   ..+..+.++.+.
T Consensus       125 ~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~  196 (280)
T PRK13633        125 VDESLKKVGMYEYR-RHAPHLLSGGQKQRV----AIAGILAM-R--PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI  196 (280)
T ss_pred             HHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            22334466776543 455899999999999    99999996 5  8999999  9999322  2   233343333345


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +|+......++ ++++++|+++..+.+.++.
T Consensus       197 tillv-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        197 TIILI-THYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             EEEEE-ecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            66666 78877766544 8889999999888877663

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.4e-20  Score=187.29  Aligned_cols=210  Identities=12%  Similarity=0.088  Sum_probs=132.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      .++.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|    
T Consensus        11 ~~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~~~~~~   68 (258)
T PRK14268         11 PQIKVENLNLWYGEKQA------------------LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM----NDLIKNC   68 (258)
T ss_pred             eeEEEeeeEEEeCCeee------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCcccCC
Confidence            45677788776653222                  2345677889999999999999999999999998    664    


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~  305 (537)
                       ++|    +|.++| ..+..++.   .  ...++..+++++|++.++. .+.     .+       ++..... ......
T Consensus        69 ~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~i~~v~q~~~~~~-~tv-----~e-------nl~~~~~-~~~~~~  124 (258)
T PRK14268         69 RIEG----KVSIEG-EDIYEPDV---D--VVELRKNVGMVFQKPNPFP-MSI-----YD-------NVAYGPR-IHGANK  124 (258)
T ss_pred             Ccce----EEEECC-EEcccccc---h--HHHHhhhEEEEecCCccCc-ccH-----HH-------HHHHHHH-HcCCCH
Confidence             899    899887 44432111   0  1122367999999977553 221     01       0000000 000000


Q ss_pred             ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--H---H
Q psy16304        306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--I---W  372 (537)
Q Consensus       306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l---~  372 (537)
                         .......+..+|+.+   ......+..|||||+||+    +++++++. +  |+++++|  |+|++....  +   +
T Consensus       125 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l  197 (258)
T PRK14268        125 KDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL----CIARTLAV-K--PKIILFDEPTSALDPISTARIEDLI  197 (258)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcccCHHHHHHHHHHH
Confidence               001112223344321   112344789999999999    99999997 5  8999999  999933322  2   2


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+. + +.+++++ +|+....... + ++++++|+++..+.++++
T Consensus       198 ~~l~-~-~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  240 (258)
T PRK14268        198 MNLK-K-DYTIVIV-THNMQQAARISDYTGFFLMGELIEFGQTRQI  240 (258)
T ss_pred             HHHh-h-CCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3332 2 3566666 8998877553 3 889999999988877766

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.78  E-value=3.5e-20  Score=205.55  Aligned_cols=212  Identities=16%  Similarity=0.159  Sum_probs=136.5

Q ss_pred             HHhhhcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304        148 MRGILMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  226 (537)
Q Consensus       148 m~~~li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P  226 (537)
                      |...++.++++++.|+ ...+.                  .+++|.+.+|++++|+|+||||||||+++|+|.    +.|
T Consensus         2 ~~~~~l~i~~l~~~y~~~~~il------------------~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~----~~p   59 (556)
T PRK11819          2 MAQYIYTMNRVSKVVPPKKQIL------------------KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV----DKE   59 (556)
T ss_pred             cccEEEEEeeEEEEeCCCCeee------------------eCceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCC
Confidence            5566889999999886 33222                  235677889999999999999999999999999    999


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeec-C-------------ccc-
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMC-G-------------VHQ-  289 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds-~-------------~~~-  289 (537)
                      +.|    +|.++++                   ..+++++|++.+++..+.  .+.+.... .             ... 
T Consensus        60 ~~G----~i~~~~~-------------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  116 (556)
T PRK11819         60 FEG----EARPAPG-------------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD  116 (556)
T ss_pred             CCc----eEEecCC-------------------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCc
Confidence            999    7776531                   236677776654432211  11000000 0             000 


Q ss_pred             ---------ccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEE
Q psy16304        290 ---------VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY  360 (537)
Q Consensus       290 ---------~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllL  360 (537)
                               ...+.+.+...+.+....+....+..+|+..  ....+.+|||||+||+    +++++++. +  |++++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~LSgGqkqrv----~la~al~~-~--p~vlLL  187 (556)
T PRK11819        117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WDAKVTKLSGGERRRV----ALCRLLLE-K--PDMLLL  187 (556)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--ccCchhhcCHHHHHHH----HHHHHHhC-C--CCEEEE
Confidence                     0000000001111111122233455677743  2455899999999999    99999996 5  899999


Q ss_pred             e--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        361 D--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       361 D--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      |  |+|++.....| .++++...++++++ +|+......++  ++++++|+++.+.++.
T Consensus       188 DEPt~~LD~~~~~~l~~~L~~~~~tviii-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~  245 (556)
T PRK11819        188 DEPTNHLDAESVAWLEQFLHDYPGTVVAV-THDRYFLDNVAGWILELDRGRGIPWEGNY  245 (556)
T ss_pred             cCCCCcCChHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcCeEEEEeCCEEEEecCCH
Confidence            9  99996554444 55555545677777 89998887654  8999999987554544

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1e-19  Score=178.48  Aligned_cols=185  Identities=18%  Similarity=0.143  Sum_probs=133.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      ..-+.+|.|++|||||||+|+|+|.    ..|+.|    .|.++| ..  +.|.... -+-...++.+|||||+..+|++
T Consensus        23 ~~GvTAlFG~SGsGKTslin~IaGL----~rPdeG----~I~lng-r~--L~Ds~k~-i~lp~~~RriGYVFQDARLFpH   90 (352)
T COG4148          23 ARGITALFGPSGSGKTSLINMIAGL----TRPDEG----RIELNG-RV--LVDAEKG-IFLPPEKRRIGYVFQDARLFPH   90 (352)
T ss_pred             CCceEEEecCCCCChhhHHHHHhcc----CCcccc----EEEECC-EE--eecccCC-cccChhhheeeeEeeccccccc
Confidence            3367899999999999999999999    999999    999998 32  3344221 1223344789999999999988


Q ss_pred             ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCc
Q psy16304        275 SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK  354 (537)
Q Consensus       275 ~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~  354 (537)
                      ++.            ..++.......    ....-+..+.++|+.+.. ..++.+||||++|||    ++.+|++. +  
T Consensus        91 ~tV------------rgNL~YG~~~~----~~~~fd~iv~lLGI~hLL-~R~P~~LSGGEkQRV----AIGRALLt-~--  146 (352)
T COG4148          91 YTV------------RGNLRYGMWKS----MRAQFDQLVALLGIEHLL-DRYPGTLSGGEKQRV----AIGRALLT-A--  146 (352)
T ss_pred             eEE------------ecchhhhhccc----chHhHHHHHHHhCcHHHH-hhCCCccCcchhhHH----HHHHHHhc-C--
Confidence            766            12222111111    011112345578888776 455999999999999    99999997 5  


Q ss_pred             eEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        355 YEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       355 p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      |+++++|  .+.+     .+....++.+.++.+.-|+-+ +|..++.....  +++|++|++.+.|...+.
T Consensus       147 P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v  216 (352)
T COG4148         147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGKVKASGPLEEV  216 (352)
T ss_pred             CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence            8999999  6666     334445577777777755555 67777776554  999999999999887765

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.78  E-value=4e-20  Score=180.11  Aligned_cols=181  Identities=19%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+.            .++..+++++
T Consensus        16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~------------~~~~~i~~v~   74 (213)
T cd03235          16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL----LKPTSG----SIRVFG-KPLE------------KERKRIGYVP   74 (213)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-ccHH------------HHHhheEEec
Confidence            345677889999999999999999999999999    899999    888876 2221            1235789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccC-CcccccccCcCC--ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSG-IPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~-l~~~l~~~~~l~--~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.+......   .+.+    .... ............  ...+....+..+|+.... ...+.+|||||+||+    +
T Consensus        75 q~~~~~~~~~~---tv~e----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~  142 (213)
T cd03235          75 QRRSIDRDFPI---SVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-DRQIGELSGGQQQRV----L  142 (213)
T ss_pred             cccccccCCCC---cHHH----HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHH----H
Confidence            98764211000   0111    0000 000000000000  001122334456665433 344889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN  405 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G  405 (537)
                      ++++++. +  |+++++|  |+|++..  .   ..+.++.+ .+.+++++ +|+..+....+  ++++++|
T Consensus       143 la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~~  208 (213)
T cd03235         143 LARALVQ-D--PDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVV-THDLGLVLEYFDRVLLLNRT  208 (213)
T ss_pred             HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEcCc
Confidence            9999996 5  8999999  9999333  2   22334333 34566666 89988776543  7777765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.78  E-value=3.3e-20  Score=183.23  Aligned_cols=186  Identities=17%  Similarity=0.089  Sum_probs=121.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| .++...        .    ...++++|
T Consensus         3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~--------~----~~~~~v~q   61 (230)
T TIGR01184         3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGL----AQPTSG----GVILEG-KQITEP--------G----PDRMVVFQ   61 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCCC--------C----hhheEEec
Confidence            35677889999999999999999999999999    999999    888887 433110        0    11378899


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCccccc-ccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++.++...+..            +++...+. .......   .......+..+|+.... ...+.+|||||+||+    +
T Consensus        62 ~~~l~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~  124 (230)
T TIGR01184        62 NYSLLPWLTVR------------ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-DKRPGQLSGGMKQRV----A  124 (230)
T ss_pred             CcccCCCCCHH------------HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-cCChhhCCHHHHHHH----H
Confidence            87755433220            00000000 0000100   01112234456766433 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |+++++|  |+|++..  ..++   ..+.++.+.+++++ +|+.......+  ++++++|+++..+...
T Consensus       125 la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       125 IARALSI-R--PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-THDVDEALLLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             HHHHHHc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence            9999996 5  8999999  9999332  2233   33333334567777 89988765533  8899999998766543


Q ss_pred             c
Q psy16304        415 N  415 (537)
Q Consensus       415 d  415 (537)
                      .
T Consensus       201 ~  201 (230)
T TIGR01184       201 E  201 (230)
T ss_pred             e
Confidence            3

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.6e-20  Score=190.19  Aligned_cols=197  Identities=13%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE-eecCCCchhhHHHHhhhhcc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL-YDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~-~D~~G~~~~r~~~~~~i~~v  265 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+.. ....  .. ...++..++++
T Consensus        28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~~~--~~-~~~~~~~i~~v   95 (289)
T PRK13645         28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL----IISETG----QTIVGD-YAIPANLKKI--KE-VKRLRKEIGLV   95 (289)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEcccccccc--cc-HHHHhccEEEE
Confidence            345677889999999999999999999999999    999999    888886 44321 0000  00 11233578999


Q ss_pred             ccCCC--CCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +|++.  ++. .+.     .+       ++.....  ..............+..+|+........+.+|||||+||+   
T Consensus        96 ~q~~~~~~~~-~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv---  159 (289)
T PRK13645         96 FQFPEYQLFQ-ETI-----EK-------DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV---  159 (289)
T ss_pred             EeCcchhhhh-hHH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH---
Confidence            99863  111 010     00       0000000  0000000001112233556632222445889999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |+|++..  ..+   +..+.+..+.+++++ +|+....... + ++++++|+++..++
T Consensus       160 -~laral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiii-sH~~~~~~~~~d~i~~l~~G~i~~~g~  234 (289)
T PRK13645        160 -ALAGIIAM-D--GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMV-THNMDQVLRIADEVIVMHEGKVISIGS  234 (289)
T ss_pred             -HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence             99999996 5  8999999  9999333  222   234433334567777 8998876543 3 89999999988877


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      ++++
T Consensus       235 ~~~~  238 (289)
T PRK13645        235 PFEI  238 (289)
T ss_pred             HHHH
Confidence            6665

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.78  E-value=5.8e-20  Score=182.15  Aligned_cols=187  Identities=18%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+.  +.      .......+++
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~~~--~~------~~~~~~~i~~   98 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL----LQPTSG----EVRVAG-LVPW--KR------RKKFLRRIGV   98 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcc--cc------chhhcccEEE
Confidence            45567888999999999999999999999999999    999999    999887 3321  11      0112256888


Q ss_pred             cc-cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        265 VS-QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       265 v~-Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      ++ |...++...+.     .+       ++... ..+....   ........+..+|+.... ...+..||+||+||+  
T Consensus        99 ~~~~~~~~~~~~tv-----~e-------~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl--  162 (236)
T cd03267          99 VFGQKTQLWWDLPV-----ID-------SFYLL-AAIYDLPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRA--  162 (236)
T ss_pred             EcCCccccCCCCcH-----HH-------HHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH--
Confidence            87 44443322211     00       00000 0000000   001112223345665433 344889999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                        +++++++. +  |+++++|  |+|++...     .++.++.++.+.+++++ +|+....... + ++++++|+++..
T Consensus       163 --~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~  235 (236)
T cd03267         163 --EIAAALLH-E--PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYD  235 (236)
T ss_pred             --HHHHHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEec
Confidence              99999997 5  8999999  99993332     22233333334567777 8998876653 3 888889987643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.78  E-value=3.2e-20  Score=224.02  Aligned_cols=265  Identities=13%  Similarity=0.038  Sum_probs=170.5

Q ss_pred             HHHHHhhhcccccccccccccccCccccccccCCCCCCc-hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304         97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPT-FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF  175 (537)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~  175 (537)
                      .++..+...+..++.+..+.++++++++.+..++...++ ...   ... . -...-+.++++...|+++.     .   
T Consensus      1114 ~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~---~~~-~-~~~g~I~f~nVsF~Y~~~~-----~--- 1180 (1466)
T PTZ00265       1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI---KNK-N-DIKGKIEIMDVNFRYISRP-----N--- 1180 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccccc---ccC-C-CCCceEEEEEEEEECCCCC-----C---
Confidence            467788888999999999999999998754432111100 000   000 0 0012356777777775421     1   


Q ss_pred             hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----------------------------
Q psy16304        176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----------------------------  226 (537)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----------------------------  226 (537)
                             ..+-.+++|.+++|+++||||++|||||||+++|.|.    +.|                             
T Consensus      1181 -------~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~----ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1466)
T PTZ00265       1181 -------VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF----YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN 1249 (1466)
T ss_pred             -------CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh----CCCccccccccccccccccccccccccccccc
Confidence                   0123456788899999999999999999999999999    777                             


Q ss_pred             -------------------------ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceee
Q psy16304        227 -------------------------TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQV  280 (537)
Q Consensus       227 -------------------------t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il  280 (537)
                                               +.|    +|.++| .++..++.       ..+++.+++|+|++.+|.. ..+++.
T Consensus      1250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G----~I~idG-~di~~~~~-------~~lR~~i~~V~Qep~LF~gTIreNI~ 1317 (1466)
T PTZ00265       1250 VGMKNVNEFSLTKEGGSGEDSTVFKNSG----KILLDG-VDICDYNL-------KDLRNLFSIVSQEPMLFNMSIYENIK 1317 (1466)
T ss_pred             cccccccccccccccccccccccCCCCC----eEEECC-EEHHhCCH-------HHHHhhccEeCCCCccccccHHHHHh
Confidence                                     577    888887 66655554       3344889999999998865 444444


Q ss_pred             EEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceE
Q psy16304        281 YLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE  356 (537)
Q Consensus       281 ~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~  356 (537)
                      +.-+ .+.+....+.+.   .+++..++.....     .+|..+       ..|||||+||+    ++|||++. +  |+
T Consensus      1318 ~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT-----~VGe~G-------~~LSGGQkQRI----aIARALlr-~--p~ 1378 (1466)
T PTZ00265       1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDT-----NVGPYG-------KSLSGGQKQRI----AIARALLR-E--PK 1378 (1466)
T ss_pred             cCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC-----ccCCCC-------CcCCHHHHHHH----HHHHHHhc-C--CC
Confidence            4322 222111111110   0111222111111     344322       34999999999    99999996 4  89


Q ss_pred             EEEEe--cCchhhHHH--HHHHHHhc---CCEEEEEEeCCCcchhhhhh-hhhhcC----CcEE-EEecccchh
Q psy16304        357 VFLYD--LGGSEDFRT--IWKQYLGT---VSQTLLVSHSLSGRPDDRCQ-VYLMSC----NCQV-YLISAKNLS  417 (537)
Q Consensus       357 lllLD--T~Gl~~~~~--l~~~~~~~---~~~vIlVvdshd~~~~~~~~-i~ll~~----G~ii-~~g~nkdl~  417 (537)
                      +++||  |++++...+  +.+.+.+.   .+.++|++ +|.......++ ++++++    |+++ ..|+.++|.
T Consensus      1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI-aHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI-AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE-echHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            99999  999944433  33444332   24577777 89988888777 888998    8865 688888874

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.3e-19  Score=169.74  Aligned_cols=215  Identities=15%  Similarity=0.123  Sum_probs=136.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++++|.|+...+..+                  +++.+.+|.+.+++|||||||||||.+++++    ...++|  
T Consensus         1 MI~i~nv~K~y~~~~vl~~------------------isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL----~~~d~G--   56 (252)
T COG4604           1 MITIENVSKSYGTKVVLDD------------------VSLDIPKGGITSIIGPNGAGKSTLLSMMSRL----LKKDSG--   56 (252)
T ss_pred             CeeehhhhHhhCCEEeecc------------------ceeeecCCceeEEECCCCccHHHHHHHHHHh----ccccCc--
Confidence            4678899999888776655                  3455779999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                        ++.++| .++..|+.   ..+.    +.++.+-|+.......+     |-| ....++-..+..++.    +......
T Consensus        57 --~i~i~g-~~~~~~~s---~~LA----k~lSILkQ~N~i~~rlT-----V~dLv~FGRfPYSqGRlt~----eD~~~I~  117 (252)
T COG4604          57 --EITIDG-LELTSTPS---KELA----KKLSILKQENHINSRLT-----VRDLVGFGRFPYSQGRLTK----EDRRIIN  117 (252)
T ss_pred             --eEEEee-eecccCCh---HHHH----HHHHHHHhhchhhheeE-----HHHHhhcCCCcccCCCCch----HHHHHHH
Confidence              999987 77766655   2222    45566556544221111     111 111111111110000    0001122


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC-EE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS-QT  382 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~-~v  382 (537)
                      ..+..+++.+. +.+++.+|||||+||.    -+|..+.+ +  .+..+||  .+.+     ......++...++-+ ++
T Consensus       118 ~aieyl~L~~l-~dryLd~LSGGQrQRA----fIAMVlaQ-d--TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kti  189 (252)
T COG4604         118 EAIEYLHLEDL-SDRYLDELSGGQRQRA----FIAMVLAQ-D--TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTI  189 (252)
T ss_pred             HHHHHhcccch-HHHhHHhcccchhhhh----hhheeeec-c--CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeE
Confidence            34556666665 4777999999999998    66655554 3  5666666  4444     555666666666544 55


Q ss_pred             EEEEeCCCcchhhhhhhhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++|.|.-+..+.....++.+++|+++..|+++++.
T Consensus       190 viVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii  224 (252)
T COG4604         190 VVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII  224 (252)
T ss_pred             EEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence            55554444444444448899999999999998873

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.78  E-value=4.8e-20  Score=186.57  Aligned_cols=198  Identities=14%  Similarity=0.085  Sum_probs=122.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--------eeeeeEEEEECCcEEEEEeecCCCchhhHHHH
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--------VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWK  259 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--------~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~  259 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|+        .|    +|.++| ..+...+.       ....
T Consensus        19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~----~~p~~~~~~~~~~G----~i~~~g-~~~~~~~~-------~~~~   82 (272)
T PRK13547         19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGD----LTGGGAPRGARVTG----DVTLNG-EPLAAIDA-------PRLA   82 (272)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCcccccccCCce----EEEECC-EEcccCCH-------HHHH
Confidence            45677889999999999999999999999999    8887        88    888887 44321111       1122


Q ss_pred             hhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        260 QYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       260 ~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      ..+++++|++..+...+.     .+ -....... ......... .........+..+|+.... ...+.+|||||+||+
T Consensus        83 ~~~~~v~q~~~~~~~~tv-----~e~l~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv  154 (272)
T PRK13547         83 RLRAVLPQAAQPAFAFSA-----REIVLLGRYPH-ARRAGALTH-RDGEIAWQALALAGATALV-GRDVTTLSGGELARV  154 (272)
T ss_pred             hhcEEecccCCCCCCCcH-----HHHHhhccccc-ccccccCCH-HHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH
Confidence            457899998653322221     11 00000000 000000000 0001112233355665443 344789999999999


Q ss_pred             ecccccccceec--------cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhh
Q psy16304        339 VPTVGFNRARVE--------YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYL  401 (537)
Q Consensus       339 s~ti~la~all~--------~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~l  401 (537)
                          +++++++.        .+  |++++||  |+|++..     ...+..+.+....+++++ +|+...... ++ +++
T Consensus       155 ----~laral~~~~~~~~~~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviii-sH~~~~~~~~~d~i~~  227 (272)
T PRK13547        155 ----QFARVLAQLWPPHDAAQP--PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAI-VHDPNLAARHADRIAM  227 (272)
T ss_pred             ----HHHHHHhccccccccCCC--CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEE
Confidence                99999994        24  8999999  9999332     223344434334566666 788887754 33 889


Q ss_pred             hcCCcEEEEecccch
Q psy16304        402 MSCNCQVYLISAKNL  416 (537)
Q Consensus       402 l~~G~ii~~g~nkdl  416 (537)
                      +++|+++..+...++
T Consensus       228 l~~G~i~~~g~~~~~  242 (272)
T PRK13547        228 LADGAIVAHGAPADV  242 (272)
T ss_pred             EECCeEEEecCHHHH
Confidence            999999887766555

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.2e-20  Score=209.59  Aligned_cols=199  Identities=14%  Similarity=0.081  Sum_probs=133.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +..+++|.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++..++.   ... ..++..+++
T Consensus       339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl----~~p~~G----~I~~~g-~~i~~~~~---~~~-~~~~~~i~~  405 (623)
T PRK10261        339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL----VESQGG----EIIFNG-QRIDTLSP---GKL-QALRRDIQF  405 (623)
T ss_pred             EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCc----EEEECC-EECCcCCH---HHH-HHhcCCeEE
Confidence            44577889999999999999999999999999999    899999    999887 44322110   111 123457999


Q ss_pred             cccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304        265 VSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       265 v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs  339 (537)
                      +||++.  +++.++.            .+++...+.......   ...+....+..+|+........+.+|||||+||+ 
T Consensus       406 v~Q~~~~~l~~~~tv------------~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv-  472 (623)
T PRK10261        406 IFQDPYASLDPRQTV------------GDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI-  472 (623)
T ss_pred             EecCchhhcCCCCCH------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH-
Confidence            999863  3333222            011111010000000   0112233455678753223556899999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                         ++|++++. +  |+++++|  |++++..     ..++..+.++.+.++|++ +||.......+  +++|++|+++..
T Consensus       473 ---~iAraL~~-~--p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~i-sHdl~~v~~~~dri~vl~~G~iv~~  545 (623)
T PRK10261        473 ---CIARALAL-N--PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFI-SHDMAVVERISHRVAVMYLGQIVEI  545 (623)
T ss_pred             ---HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEe
Confidence               99999996 5  8999999  9999322     233344444445677777 89988876544  899999999988


Q ss_pred             ecccch
Q psy16304        411 ISAKNL  416 (537)
Q Consensus       411 g~nkdl  416 (537)
                      |...++
T Consensus       546 g~~~~i  551 (623)
T PRK10261        546 GPRRAV  551 (623)
T ss_pred             cCHHHH
Confidence            877766

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=2.1e-19  Score=174.03  Aligned_cols=186  Identities=16%  Similarity=0.165  Sum_probs=121.6

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---Ccee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVG  229 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G  229 (537)
                      .+++++.+.|+...  .+            ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.   |++|
T Consensus         4 ~~~~~~~~~~~~~~--~~------------~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~~~~G   65 (202)
T cd03233           4 LSWRNISFTTGKGR--SK------------IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR----TEGNVSVEG   65 (202)
T ss_pred             EEEEccEEEeccCC--CC------------ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc----CCCCCCcce
Confidence            46788888876542  11            1123455677889999999999999999999999999    87   8999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                          ++.++| ..+...        ....+..+++++|+..+++..+.                .+.+......      
T Consensus        66 ----~i~i~g-~~~~~~--------~~~~~~~i~~~~q~~~~~~~~tv----------------~~~l~~~~~~------  110 (202)
T cd03233          66 ----DIHYNG-IPYKEF--------AEKYPGEIIYVSEEDVHFPTLTV----------------RETLDFALRC------  110 (202)
T ss_pred             ----EEEECC-EECccc--------hhhhcceEEEEecccccCCCCcH----------------HHHHhhhhhh------
Confidence                888887 433211        11123568898988664433221                1111110000      


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~v  382 (537)
                      .            ....+..||+||+||+    +++++++. +  |+++++|  |+|++..  ..+   +..+.+..+.+
T Consensus       111 ~------------~~~~~~~LS~Ge~qrl----~laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t  171 (202)
T cd03233         111 K------------GNEFVRGISGGERKRV----SIAEALVS-R--ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT  171 (202)
T ss_pred             c------------cccchhhCCHHHHHHH----HHHHHHhh-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence            0            1334778999999999    99999997 5  8999999  9998322  223   34443433445


Q ss_pred             EEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304        383 LLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL  410 (537)
Q Consensus       383 IlVvdshd~~~~~~-~~-i~ll~~G~ii~~  410 (537)
                      ++++++|+...... ++ ++++++|+++..
T Consensus       172 ~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~  201 (202)
T cd03233         172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYY  201 (202)
T ss_pred             EEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence            55554676555443 33 889999997653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.78  E-value=2.5e-20  Score=205.54  Aligned_cols=220  Identities=14%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      .++.++++.+.|+...  ..            ..+-..++|.+.+|++++|+|+||||||||+++|+|.    +.|    
T Consensus         4 ~~l~~~~l~~~~~~~~--~~------------~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~----~~~~~~~   65 (529)
T PRK15134          4 PLLAIENLSVAFRQQQ--TV------------RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL----LPSPPVV   65 (529)
T ss_pred             ceEEEeceEEEecCCC--Cc------------eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC----CCCCcCC
Confidence            3567888888775310  00            0123345677889999999999999999999999999    765    


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcC
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL  303 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l  303 (537)
                       ++|    +|.++| ..+..++.   ..........+++++|++.  +.+..+.     .       +++...+......
T Consensus        66 ~~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~Q~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~  125 (529)
T PRK15134         66 YPSG----DIRFHG-ESLLHASE---QTLRGVRGNKIAMIFQEPMVSLNPLHTL-----E-------KQLYEVLSLHRGM  125 (529)
T ss_pred             ccce----EEEECC-EecccCCH---HHHHHHhcCceEEEecCchhhcCchhhH-----H-------HHHHHHHHHhcCC
Confidence             789    999887 54432221   1111112246899999864  2111110     0       0000000000001


Q ss_pred             C---ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----H
Q psy16304        304 P---LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----I  371 (537)
Q Consensus       304 ~---~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l  371 (537)
                      .   ...+....+..+|+.+.  ...+.+.+|||||+||+    ++|++++. +  |++++||  |++++....     +
T Consensus       126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv----~iAraL~~-~--p~llllDEPt~~LD~~~~~~l~~~  198 (529)
T PRK15134        126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV----MIAMALLT-R--PELLIADEPTTALDVSVQAQILQL  198 (529)
T ss_pred             CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCCccCHHHHHHHHHH
Confidence            0   11122334556777542  12445899999999999    99999996 5  8999999  999943322     2


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +.++.++.+.+++++ +|+.......+  ++++++|+++..+++.++
T Consensus       199 l~~l~~~~g~tvi~v-tHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        199 LRELQQELNMGLLFI-THNLSIVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHHHHhcCCeEEEE-cCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            334333334567777 89988776543  899999999988887765

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.77  E-value=5.2e-20  Score=204.99  Aligned_cols=261  Identities=14%  Similarity=0.057  Sum_probs=166.5

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCc--hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPT--FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      ....|+..+...+.+++....+++++.++++.+...+....+  .+.         -....+.++++...|++..  .. 
T Consensus       286 ~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~---------~~~~~i~~~~v~f~y~~~~--~~-  353 (576)
T TIGR02204       286 MVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPV---------PLRGEIEFEQVNFAYPARP--DQ-  353 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCc---------CCCceEEEEEEEEECCCCC--CC-
Confidence            456799999999999999999999998888754321111000  000         0012356677777664311  00 


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                  ..-+++++.+++|++++|+|+||+|||||+++|+|.    +.|+.|    ++.++| .++..++.   
T Consensus       354 ------------~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl----~~p~~G----~I~i~g-~~i~~~~~---  409 (576)
T TIGR02204       354 ------------PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF----YDPQSG----RILLDG-VDLRQLDP---  409 (576)
T ss_pred             ------------ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----EEEECC-EEHHhcCH---
Confidence                        012346688899999999999999999999999999    999999    999987 65544332   


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccc------cCcCCccccCCccEEEeccCccCc
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTS------ATHLPLVDFRSVPILVLGLDNAGK  323 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~------~~~l~~~~~~~~~L~llGl~~~gK  323 (537)
                          ..+++.+++++|++.++.. ..+++.+.-+ .+.++   +.+.++.      +..++...     -..+|..    
T Consensus       410 ----~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~---~~~~l~~~~l~~~i~~l~~gl-----~t~i~~~----  473 (576)
T TIGR02204       410 ----AELRARMALVPQDPVLFAASVMENIRYGRPDATDEE---VEAAARAAHAHEFISALPEGY-----DTYLGER----  473 (576)
T ss_pred             ----HHHHHhceEEccCCccccccHHHHHhcCCCCCCHHH---HHHHHHHcCcHHHHHhCCCCC-----CceeCCC----
Confidence                2344789999999998865 3333322111 11111   1111111      11110000     0022221    


Q ss_pred             cchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304        324 SSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       324 s~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~  398 (537)
                         ...|||||+||+    ++||+++. +  |+++++|  |++++...  .+.+.+.+. .+.+++++ +|+......++
T Consensus       474 ---g~~LSgGq~Qrl----~laRal~~-~--~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iii-tH~~~~~~~~d  542 (576)
T TIGR02204       474 ---GVTLSGGQRQRI----AIARAILK-D--APILLLDEATSALDAESEQLVQQALETLMKGRTTLII-AHRLATVLKAD  542 (576)
T ss_pred             ---CCcCCHHHHHHH----HHHHHHHh-C--CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhCC
Confidence               235999999999    99999996 4  8999999  99994332  222333222 23566666 78777776665


Q ss_pred             -hhhhcCCcEEEEecccchh
Q psy16304        399 -VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       399 -i~ll~~G~ii~~g~nkdl~  417 (537)
                       +..+++|+++..|+..++.
T Consensus       543 ~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       543 RIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             EEEEEECCEEEeeecHHHHH
Confidence             8899999999998877663

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.77  E-value=6.2e-20  Score=223.29  Aligned_cols=266  Identities=12%  Similarity=0.019  Sum_probs=172.9

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccCC----CCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCC
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSD----DPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSD  169 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~  169 (537)
                      ....|+..+...+++++....+++|+.++++.+....    .+.+|-..         -....+.+++++..|+...   
T Consensus      1231 ~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~w---------p~~g~I~f~nVsf~Y~~~~--- 1298 (1522)
T TIGR00957      1231 QVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGW---------PPRGRVEFRNYCLRYREDL--- 1298 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCC---------CCCCcEEEEEEEEEeCCCC---
Confidence            3457888999999999999999999999886543221    11111000         0022456677777664321   


Q ss_pred             CCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecC
Q psy16304        170 DPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG  249 (537)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~  249 (537)
                      +             .+-+++++.+++|+++||||++|||||||++.|.|.    ++|+.|    +|.++| +++.-++. 
T Consensus      1299 ~-------------~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl----~~~~~G----~I~IdG-~dI~~i~~- 1355 (1522)
T TIGR00957      1299 D-------------LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI----NESAEG----EIIIDG-LNIAKIGL- 1355 (1522)
T ss_pred             c-------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----ccCCCC----eEEECC-EEccccCH-
Confidence            0             123456788899999999999999999999999999    999999    999997 77765554 


Q ss_pred             CCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccC-CccEEEeccCccCccchh
Q psy16304        250 GSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR-SVPILVLGLDNAGKSSII  327 (537)
Q Consensus       250 G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llGl~~~gKs~li  327 (537)
                        ..    ++..+++++|++.+|.. ..+++-..-+.+.++   +.+.++..+-.+....- .-.=..+|..       -
T Consensus      1356 --~~----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee---i~~al~~a~l~~~I~~lp~GLdt~v~e~-------G 1419 (1522)
T TIGR00957      1356 --HD----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE---VWWALELAHLKTFVSALPDKLDHECAEG-------G 1419 (1522)
T ss_pred             --HH----HHhcCeEECCCCcccCccHHHHcCcccCCCHHH---HHHHHHHcCcHHHHhhCccCCCceecCC-------C
Confidence              33    44889999999998865 222221000011111   11111110000000000 0000022222       2


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      ..|||||||++    ++||+++. +  |++++||  |++++...+  +.+.+.+. .+.+++++ +|.......++ +++
T Consensus      1420 ~~LSgGQrQrl----~LARALLr-~--~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~I-AHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957      1420 ENLSVGQRQLV----CLARALLR-K--TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI-AHRLNTIMDYTRVIV 1491 (1522)
T ss_pred             CcCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEEE
Confidence            34999999999    99999996 4  8999999  999954433  22333332 34577788 89998888777 999


Q ss_pred             hcCCcEEEEecccchhh
Q psy16304        402 MSCNCQVYLISAKNLSN  418 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~~  418 (537)
                      |++|+++..|++.++.+
T Consensus      1492 ld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1492 LDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             EECCEEEEECCHHHHHh
Confidence            99999999999998854

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=6.1e-20  Score=181.37  Aligned_cols=189  Identities=16%  Similarity=0.114  Sum_probs=126.2

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++...     ...    ...+++++|+
T Consensus        18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~q~   79 (232)
T PRK10771         18 FDLTVERGERVAILGPSGAGKSTLLNLIAGF----LTPASG----SLTLNG-QDHTTT-----PPS----RRPVSMLFQE   79 (232)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-eecCcC-----Chh----hccEEEEecc
Confidence            4677889999999999999999999999999    999999    899887 433211     111    2468999999


Q ss_pred             CCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        269 PLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       269 ~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      +.+++..+.  .+.+...          .... ... ....+....+..+|+... ....+.+|||||+||+    ++++
T Consensus        80 ~~~~~~~tv~e~l~~~~~----------~~~~-~~~-~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv----~lar  142 (232)
T PRK10771         80 NNLFSHLTVAQNIGLGLN----------PGLK-LNA-AQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRV----ALAR  142 (232)
T ss_pred             cccccCCcHHHHHhcccc----------cccC-CCH-HHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHH----HHHH
Confidence            776543222  1100000          0000 000 001112233446677644 3555889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++. +  |+++++|  |+|++..     ..++..+.++.+.+++++ +|+....... + ++++++|++...+...++
T Consensus       143 al~~-~--p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  217 (232)
T PRK10771        143 CLVR-E--QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV-SHSLEDAARIAPRSLVVADGRIAWDGPTDEL  217 (232)
T ss_pred             HHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9996 5  8999999  9999332     233344444334567777 8998876553 3 899999999887766655

>PLN03130 ABC transporter C family member; Provisional

Probab=99.77  E-value=5.4e-20  Score=223.99  Aligned_cols=258  Identities=14%  Similarity=0.057  Sum_probs=164.1

Q ss_pred             HHHHHhhhcccccccccccccccCccccccccCCC----CCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304         97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDD----PAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA  172 (537)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~  172 (537)
                      .++..+...+..++....+++|+.++++.+...+.    ..||-..         -....+.++|++..|....   .  
T Consensus      1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~w---------p~~g~I~f~nVsf~Y~~~~---~-- 1252 (1622)
T PLN03130       1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGW---------PSSGSIKFEDVVLRYRPEL---P-- 1252 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCC---------CCCCcEEEEEEEEEeCCCC---C--
Confidence            34444455556667778888888888764432110    0011000         0012456677777664211   0  


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                                 .+-.++++++++|+++||||++|||||||+++|.|.    +.|++|    +|.++| +++.-++.   .
T Consensus      1253 -----------~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl----~~p~~G----~I~IDG-~dI~~i~l---~ 1309 (1622)
T PLN03130       1253 -----------PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI----VELERG----RILIDG-CDISKFGL---M 1309 (1622)
T ss_pred             -----------ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCc----eEEECC-EecccCCH---H
Confidence                       123456788999999999999999999999999999    999999    999997 66655443   3


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccc------cCcCCccccCCccEEEeccCccCccc
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTS------ATHLPLVDFRSVPILVLGLDNAGKSS  325 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~------~~~l~~~~~~~~~L~llGl~~~gKs~  325 (537)
                      .+    ++.+++|+|++.+|.. ..+++-..-+.+.+   ++.+.++.      +..++....     ..+|..      
T Consensus      1310 ~L----R~~IsiVpQdp~LF~GTIreNLd~~~~~tde---ei~~Al~~a~l~~~I~~lp~GLd-----t~Vge~------ 1371 (1622)
T PLN03130       1310 DL----RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDA---DLWESLERAHLKDVIRRNSLGLD-----AEVSEA------ 1371 (1622)
T ss_pred             HH----HhccEEECCCCccccccHHHHhCcCCCCCHH---HHHHHHHHcCcHHHHHhCccccC-----ccccCC------
Confidence            33    4889999999998865 22222111011111   11111111      111100000     012221      


Q ss_pred             hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-h
Q psy16304        326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-V  399 (537)
Q Consensus       326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i  399 (537)
                       -..||||||||+    ++||+++. +  |++++||  |++++...+  +.+.+.+. .+.+++++ +|...+..+++ +
T Consensus      1372 -G~nLSgGQrQrl----aLARALLr-~--p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~I-AHRL~tI~~~DrI 1442 (1622)
T PLN03130       1372 -GENFSVGQRQLL----SLARALLR-R--SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-AHRLNTIIDCDRI 1442 (1622)
T ss_pred             -CCCCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-eCChHHHHhCCEE
Confidence             235999999999    99999996 5  8999999  999954433  22333332 34677788 89999888777 9


Q ss_pred             hhhcCCcEEEEecccchhh
Q psy16304        400 YLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       400 ~ll~~G~ii~~g~nkdl~~  418 (537)
                      ++|++|+++..|++.+|.+
T Consensus      1443 lVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1443 LVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             EEEECCEEEEeCCHHHHHh
Confidence            9999999999999998854

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.77  E-value=6.4e-20  Score=178.87  Aligned_cols=185  Identities=14%  Similarity=0.121  Sum_probs=122.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++.  +   ...    .+..+++++|
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~--~---~~~----~~~~i~~v~q   77 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF----IEPASG----SIKVND-QSHT--G---LAP----YQRPVSMLFQ   77 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEcc--c---CCh----hccceEEEec
Confidence            35677889999999999999999999999999    999999    999887 4332  1   111    2256999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCccccc-ccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+..            +++...+. ... ......+....+..+|+.... ...+..||+||+||+    +++
T Consensus        78 ~~~~~~~~t~~------------en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la  140 (213)
T TIGR01277        78 ENNLFAHLTVR------------QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-DRLPEQLSGGQRQRV----ALA  140 (213)
T ss_pred             cCccCCCCcHH------------HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-hCCcccCCHHHHHHH----HHH
Confidence            98766543321            00100000 000 000011122334466775543 455889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g  411 (537)
                      ++++. +  |+++++|  |+|++..     ...+..+.++.+.+++++ +|+...... ++ ++++++|++...+
T Consensus       141 ral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v-sh~~~~~~~~~d~v~~l~~g~i~~~~  211 (213)
T TIGR01277       141 RCLVR-P--NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV-THHLSDARAIASQIAVVSQGKIKVVS  211 (213)
T ss_pred             HHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHhhcCeEEEEECCeEEEec
Confidence            99996 5  8999999  9999332     223344443334567777 888877654 33 8889999987654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.9e-20  Score=185.05  Aligned_cols=210  Identities=14%  Similarity=0.101  Sum_probs=132.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.|     
T Consensus         4 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~~~~   61 (253)
T PRK14267          4 AIETVNLRVYYGSNHV------------------IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL----LELNEEAR   61 (253)
T ss_pred             eEEEEeEEEEeCCeee------------------eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCcccCCC
Confidence            5667888887654322                  2345677889999999999999999999999999    776     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~  304 (537)
                      ++|    +|.++| .++...+.    .. ..++..+++++|++.+++..+..     +       ++..... ....  .
T Consensus        62 ~~G----~i~~~g-~~i~~~~~----~~-~~~~~~i~~~~q~~~~~~~~tv~-----e-------nl~~~~~-~~~~~~~  118 (253)
T PRK14267         62 VEG----EVRLFG-RNIYSPDV----DP-IEVRREVGMVFQYPNPFPHLTIY-----D-------NVAIGVK-LNGLVKS  118 (253)
T ss_pred             Cce----EEEECC-EEcccccc----Ch-HHHhhceeEEecCCccCCCCcHH-----H-------HHHHHHH-hcCccCC
Confidence            499    899887 44321011    00 12336799999998765432220     0       0000000 0000  0


Q ss_pred             ---ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HH
Q psy16304        305 ---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TI  371 (537)
Q Consensus       305 ---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l  371 (537)
                         ........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++...     ..
T Consensus       119 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~  191 (253)
T PRK14267        119 KKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL----VIARALAM-K--PKILLMDEPTANIDPVGTAKIEEL  191 (253)
T ss_pred             HHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHH
Confidence               0001112222344321   112445789999999999    99999996 5  8999999  99983332     22


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +..+. . +.+++++ +|+...... ++ ++++++|+++..+.++++
T Consensus       192 l~~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (253)
T PRK14267        192 LFELK-K-EYTIVLV-THSPAQAARVSDYVAFLYLGKLIEVGPTRKV  235 (253)
T ss_pred             HHHHh-h-CCEEEEE-ECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            33332 2 3566676 899887654 33 889999999988777665

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.4e-20  Score=184.02  Aligned_cols=193  Identities=13%  Similarity=0.057  Sum_probs=122.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..   |+.|    +|.++| .++...+   .    ...+..+++
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~G----~i~~~g-~~i~~~~---~----~~~~~~i~~   83 (246)
T PRK14269         20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM----NDKIAKIDG----LVEIEG-KDVKNQD---V----VALRKNVGM   83 (246)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCCCce----EEEECC-EecccCC---H----HHHhhhEEE
Confidence            45677889999999999999999999999998    63   7899    899887 4442211   1    122367999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCccc--c-cccCc-CCccccCCccEEEeccCc---cCccchhhhhcCCCcee
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--L-TSATH-LPLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIIS  337 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l-~~~~~-l~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqr  337 (537)
                      ++|++.++.. +.     .+       ++...  + ..... .....+....+..+|+..   ......+..||+||+||
T Consensus        84 ~~q~~~l~~~-tv-----~e-------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  150 (246)
T PRK14269         84 VFQQPNVFVK-SI-----YE-------NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR  150 (246)
T ss_pred             EecCCccccc-cH-----HH-------HhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence            9999876542 11     01       00000  0 00000 000001122233455531   01233467899999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      +    +++++++. +  |+++++|  |+|++...  .+.+.+.+ ..+.+++++ +|+....... + ++++++|+++..
T Consensus       151 v----~laral~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~  222 (246)
T PRK14269        151 L----CIARALAI-K--PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMV-THNMQQGKRVADYTAFFHLGELIEF  222 (246)
T ss_pred             H----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHhhCcEEEEEECCEEEEE
Confidence            9    99999997 5  8999999  99983332  22232222 124566776 8898877643 3 889999999988


Q ss_pred             ecccchh
Q psy16304        411 ISAKNLS  417 (537)
Q Consensus       411 g~nkdl~  417 (537)
                      +++.++.
T Consensus       223 g~~~~~~  229 (246)
T PRK14269        223 GESKEFF  229 (246)
T ss_pred             CCHHHHH
Confidence            8877663

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.1e-20  Score=187.42  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=125.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+.. ..   .. ...+...+++++
T Consensus        19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~-~~---~~-~~~~~~~i~~v~   84 (275)
T PRK13639         19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI----LKPTSG----EVLIKG-EPIKY-DK---KS-LLEVRKTVGIVF   84 (275)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EECcc-cc---ch-HHHHHhheEEEe
Confidence            345677889999999999999999999999999    999999    999887 44321 00   11 112346799999


Q ss_pred             cCCC-CCCCccceeeEEeecCcccccCCcccc-c-ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDEL-T-SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l-~-~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++. .+...+.     .+       ++.... . ..............+..+|+.+.. +..+.+|||||+||+    +
T Consensus        85 q~~~~~~~~~tv-----~e-------~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qrv----~  147 (275)
T PRK13639         85 QNPDDQLFAPTV-----EE-------DVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRV----A  147 (275)
T ss_pred             eChhhhhccccH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHHH----H
Confidence            9863 1111111     11       000000 0 000000001122234456766544 455899999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nk  414 (537)
                      ++++++. +  |+++++|  |+|++..     ...+..+.+. +.+++++ +|+...... ++ ++++++|+++..+.+.
T Consensus       148 laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~v-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  222 (275)
T PRK13639        148 IAGILAM-K--PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIIS-THDVDLVPVYADKVYVMSDGKIIKEGTPK  222 (275)
T ss_pred             HHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999996 5  8999999  9999333     2233343333 4566666 888887664 33 8999999999888777


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      ++
T Consensus       223 ~~  224 (275)
T PRK13639        223 EV  224 (275)
T ss_pred             HH
Confidence            65

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.77  E-value=3.3e-20  Score=199.20  Aligned_cols=227  Identities=12%  Similarity=0.069  Sum_probs=159.9

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      .++.++|+...|...   ..+           +.+..++||.+.+||++||||.+||||||+.+.|.|.    ..+    
T Consensus         4 ~lL~V~nL~v~~~~~---~~~-----------~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gl----l~~~~~~   65 (539)
T COG1123           4 PLLEVENLTVEFATD---GGR-----------VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL----LPEGGRI   65 (539)
T ss_pred             ceEEEeceEEEEecC---Ccc-----------eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhcc----CCCCCcc
Confidence            467888999876654   110           3356778899999999999999999999999999998    554    


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL---  303 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l---  303 (537)
                      +.|    +|.++| .++..++.   ...+......++++||++.-..+-...+          ..++.+.+......   
T Consensus        66 ~~G----~I~~~g-~dl~~l~~---~~~r~~rg~~Ia~i~Q~p~~slnP~~tI----------g~Qi~E~~~~h~~~~~~  127 (539)
T COG1123          66 TSG----EVILDG-RDLLGLSE---REMRKLRGKRIAMIFQDPMTSLNPVMTI----------GDQIREALRLHGKGSRA  127 (539)
T ss_pred             cce----EEEECC-cchhcCCH---HHHHHhccccEEEEecCchhhcCchhhH----------HHHHHHHHHHhccccHH
Confidence            478    999987 44433333   2345666788999999976221100000          01111111111111   


Q ss_pred             CccccCCccEEEeccCccCcc-chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304        304 PLVDFRSVPILVLGLDNAGKS-SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY  375 (537)
Q Consensus       304 ~~~~~~~~~L~llGl~~~gKs-~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~  375 (537)
                      +...++...+..+|+++.... .++++|||||+||+    .+|.+++. +  |+++++|  |.++     ..+..+++.+
T Consensus       128 ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv----~iAmALa~-~--P~LLIaDEPTTaLDvt~q~qIL~llk~l  200 (539)
T COG1123         128 EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV----MIAMALAL-K--PKLLIADEPTTALDVTTQAQILDLLKDL  200 (539)
T ss_pred             HHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH----HHHHHHhC-C--CCEEEECCCccccCHHHHHHHHHHHHHH
Confidence            112233455668898887653 68999999999999    99999986 4  8999999  8888     3444555677


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhc
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFK  421 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~  421 (537)
                      .++.+.+++++ +||+.-....+  +.+|++|+++..|...++.+...
T Consensus       201 ~~e~g~a~l~I-THDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~  247 (539)
T COG1123         201 QRELGMAVLFI-THDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ  247 (539)
T ss_pred             HHHcCcEEEEE-cCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccC
Confidence            77777788888 99998877655  99999999999999998755433

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.77  E-value=6.2e-20  Score=185.74  Aligned_cols=216  Identities=12%  Similarity=0.050  Sum_probs=132.9

Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  227 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt  227 (537)
                      |++.++.++++.+.|+....                 +-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+
T Consensus         2 ~~~~~l~~~~l~~~~~~~~~-----------------il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~   60 (272)
T PRK15056          2 MQQAGIVVNDVTVTWRNGHT-----------------ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF----VRLA   60 (272)
T ss_pred             chhceEEEEeEEEEecCCcE-----------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCC
Confidence            56667888999987752110                 12345677889999999999999999999999999    9999


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--Cc
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PL  305 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~  305 (537)
                      +|    ++.++| ..+.       .   ......+++++|++.+.......   +.+.-.  .. ...........  ..
T Consensus        61 ~G----~i~~~g-~~i~-------~---~~~~~~i~~v~q~~~~~~~~~~~---~~~~i~--~~-~~~~~~~~~~~~~~~  119 (272)
T PRK15056         61 SG----KISILG-QPTR-------Q---ALQKNLVAYVPQSEEVDWSFPVL---VEDVVM--MG-RYGHMGWLRRAKKRD  119 (272)
T ss_pred             ce----EEEECC-EEhH-------H---hhccceEEEeccccccccCCCcc---hhhhee--cc-cccccccccCCCHHH
Confidence            99    888887 3321       0   11113589999986532110000   000000  00 00000000000  00


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~  378 (537)
                      .......+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++..+.+.
T Consensus       120 ~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv----~laraL~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~~~  191 (272)
T PRK15056        120 RQIVTAALARVDMVEFR-HRQIGELSGGQKKRV----FLARAIAQ-Q--GQVILLDEPFTGVDVKTEARIISLLRELRDE  191 (272)
T ss_pred             HHHHHHHHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence            01112233456665443 445889999999999    99999996 5  8999999  9999332     2233344333


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                       +.+++++ +|+.......+  ++++ +|+++..+..+++
T Consensus       192 -g~tviiv-sH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        192 -GKTMLVS-THNLGSVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             -CCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence             3466666 88887765544  5444 8998887776665

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.77  E-value=1.1e-19  Score=172.81  Aligned_cols=154  Identities=19%  Similarity=0.190  Sum_probs=106.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    +|.++| .++..++.       ..+...+++++
T Consensus        16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~----~~~~~G----~v~~~g-~~~~~~~~-------~~~~~~i~~~~   79 (180)
T cd03214          16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL----LKPSSG----EILLDG-KDLASLSP-------KELARKIAYVP   79 (180)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECCcCCH-------HHHHHHHhHHH
Confidence            345677889999999999999999999999999    999999    888887 44322211       12235677766


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |  .                                          +..+|+.... ...+..||+||+||+    ++++
T Consensus        80 q--~------------------------------------------l~~~gl~~~~-~~~~~~LS~G~~qrl----~lar  110 (180)
T cd03214          80 Q--A------------------------------------------LELLGLAHLA-DRPFNELSGGERQRV----LLAR  110 (180)
T ss_pred             H--H------------------------------------------HHHcCCHhHh-cCCcccCCHHHHHHH----HHHH
Confidence            6  0                                          0011222111 123678999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                      +++. +  |+++++|  |+|++..     ...+..+.++.+.+++++ +|+....... + ++++++|++..
T Consensus       111 al~~-~--p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214         111 ALAQ-E--PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV-LHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             HHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence            9996 5  8999999  9898322     223334433324566666 7888876543 3 88888888764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.77  E-value=6.1e-20  Score=201.15  Aligned_cols=193  Identities=12%  Similarity=0.025  Sum_probs=126.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|  ++|    +|.++| ..+...      ..+..++..++++
T Consensus        19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~----~~~~~~~G----~i~~~g-~~~~~~------~~~~~~~~~i~~v   83 (500)
T TIGR02633        19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGV----YPHGTWDG----EIYWSG-SPLKAS------NIRDTERAGIVII   83 (500)
T ss_pred             ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCCCe----EEEECC-EECCCC------CHHHHHhCCEEEE
Confidence            45677889999999999999999999999999    775  799    888887 433211      1112233568999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCccccccc--C-cCC---ccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--T-HLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~-~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs  339 (537)
                      +|++.++...+..     +       ++.......  . .+.   ...+....+..+|+........+.+|||||+||+ 
T Consensus        84 ~q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv-  150 (500)
T TIGR02633        84 HQELTLVPELSVA-----E-------NIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV-  150 (500)
T ss_pred             eeccccCCCCcHH-----H-------HHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH-
Confidence            9997655432220     0       000000000  0 000   0011223344667765433445899999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                         ++|++++. +  |+++++|  |+|++....     .+..+. ..+.+++++ +||.......+  ++++++|+++..
T Consensus       151 ---~iA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviii-tHd~~~~~~~~d~i~~l~~G~i~~~  222 (500)
T TIGR02633       151 ---EIAKALNK-Q--ARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYI-SHKLNEVKAVCDTICVIRDGQHVAT  222 (500)
T ss_pred             ---HHHHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEE-eCcHHHHHHhCCEEEEEeCCeEeee
Confidence               99999996 5  8999999  999943322     223333 234567777 89988877544  899999999887


Q ss_pred             ecccch
Q psy16304        411 ISAKNL  416 (537)
Q Consensus       411 g~nkdl  416 (537)
                      +...+.
T Consensus       223 ~~~~~~  228 (500)
T TIGR02633       223 KDMSTM  228 (500)
T ss_pred             cCcccC
Confidence            766543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.77  E-value=9e-20  Score=199.39  Aligned_cols=193  Identities=9%  Similarity=0.018  Sum_probs=127.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| ..+..++      ....++..+++++
T Consensus        15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~v~   79 (491)
T PRK10982         15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI----YQKDSG----SILFQG-KEIDFKS------SKEALENGISMVH   79 (491)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCce----EEEECC-EECCCCC------HHHHHhCCEEEEe
Confidence            345677889999999999999999999999999    899999    888887 4332111      1122346789999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |++.++...+..            +++..........  .   ...+....+..+|+.... ...+.+|||||+||+   
T Consensus        80 q~~~~~~~~tv~------------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv---  143 (491)
T PRK10982         80 QELNLVLQRSVM------------DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKVATLSVSQMQMI---  143 (491)
T ss_pred             cccccccCCCHH------------HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHH---
Confidence            987654432221            0000000000000  0   001122334456766443 445899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |+|++..  ..+   +..+.+ .+.+++++ +|+.......+  ++++++|+++..+.
T Consensus       144 -~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~  217 (491)
T PRK10982        144 -EIAKAFSY-N--AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILRDGQWIATQP  217 (491)
T ss_pred             -HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEeecC
Confidence             99999996 5  8999999  9999433  222   233322 34566666 89988776543  89999999998887


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      ++++
T Consensus       218 ~~~~  221 (491)
T PRK10982        218 LAGL  221 (491)
T ss_pred             hhhC
Confidence            6654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.1e-20  Score=207.44  Aligned_cols=224  Identities=13%  Similarity=0.047  Sum_probs=141.4

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++.+.|+...  ..            ..+...++|.+.+|+++||||+||||||||+++|+|.    +.|+.|
T Consensus        10 ~~~l~v~~l~~~y~~~~--~~------------~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl----l~p~~G   71 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQ--QK------------IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL----LEQAGG   71 (623)
T ss_pred             CceEEEeceEEEecCCC--Cc------------eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCe
Confidence            34678889998875321  00            1123456788889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEE-----EeecCCCc--hhhHHHHhhhhccccCC--CCCCCccceeeEEeecCcccccCCccccccc
Q psy16304        230 FNRARVEYGNKYEVF-----LYDLGGSE--DFRTIWKQYLGTVSQTP--LGRPDSRTCQVYLIMCGVHQVSGIPDELTSA  300 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~-----~~D~~G~~--~~r~~~~~~i~~v~Q~~--~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~  300 (537)
                          .|.++| ..+.     ..+.....  ..+......+++++|++  .+++..+.            .+++...+...
T Consensus        72 ----~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv------------~e~l~~~~~~~  134 (623)
T PRK10261         72 ----LVQCDK-MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTV------------GEQIAESIRLH  134 (623)
T ss_pred             ----EEEECC-EEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCH------------HHHHHHHHHHh
Confidence                888876 4331     01111111  11111224689999987  33332221            01111100000


Q ss_pred             CcCC---ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----H
Q psy16304        301 THLP---LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----F  368 (537)
Q Consensus       301 ~~l~---~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~  368 (537)
                      ..+.   ...+....+..+|+...  .....+.+|||||+||+    ++|++++. +  |+++++|  |++++.     +
T Consensus       135 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv----~iA~AL~~-~--P~lLllDEPt~~LD~~~~~~l  207 (623)
T PRK10261        135 QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV----MIAMALSC-R--PAVLIADEPTTALDVTIQAQI  207 (623)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCCCccCHHHHHHH
Confidence            0110   01122334556787531  12455899999999999    99999996 5  8999999  999933     2


Q ss_pred             HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       369 ~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+++.+.++.+.++|++ +||...+...+  +++|++|+++..+..+++
T Consensus       208 ~~ll~~l~~~~g~tvi~i-tHdl~~~~~~adri~vl~~G~i~~~g~~~~~  256 (623)
T PRK10261        208 LQLIKVLQKEMSMGVIFI-THDMGVVAEIADRVLVMYQGEAVETGSVEQI  256 (623)
T ss_pred             HHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence            233345444435567777 89998876544  999999999887766655

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.2e-20  Score=185.52  Aligned_cols=214  Identities=14%  Similarity=0.120  Sum_probs=134.7

Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--  225 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--  225 (537)
                      |...++.++++.+.|+....                  ..++++.+.+|++++|+|+||||||||+++|+|.    ..  
T Consensus         8 ~~~~~l~i~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~   65 (259)
T PRK14274          8 MKQEVYQINGMNLWYGQHHA------------------LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM----IQMV   65 (259)
T ss_pred             cCCceEEEeeEEEEECCeee------------------EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----ccCC
Confidence            45667888999987764222                  2234577889999999999999999999999998    65  


Q ss_pred             C---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc
Q psy16304        226 P---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH  302 (537)
Q Consensus       226 P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~  302 (537)
                      |   +.|    ++.++| ..+..++.    . ...++..+++++|++.++.. +.     .+       ++.........
T Consensus        66 p~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~  122 (259)
T PRK14274         66 PNVKLTG----EMNYNG-SNILKGKV----D-LVELRKNIGMVFQKGNPFPQ-SI-----FD-------NVAYGPRIHGT  122 (259)
T ss_pred             CCCCCce----EEEECC-EEcccccc----C-HHHHhhceEEEecCCccccc-CH-----HH-------HHHhHHHhcCC
Confidence            3   689    999887 54432111    1 11233679999999775542 11     01       00000000000


Q ss_pred             CC-c--cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH-
Q psy16304        303 LP-L--VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI-  371 (537)
Q Consensus       303 l~-~--~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l-  371 (537)
                      .. .  ..+....+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++..  ..+ 
T Consensus       123 ~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~  195 (259)
T PRK14274        123 KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL----CIARALAT-N--PDVLLMDEPTSALDPVSTRKIE  195 (259)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHH
Confidence            00 0  001111222334321   112344788999999999    99999996 5  8999999  9999332  222 


Q ss_pred             --HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        372 --WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 --~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                        +..+. + +.+++++ +|+.+..... + ++++++|+++..+.+.++
T Consensus       196 ~~l~~~~-~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        196 ELILKLK-E-KYTIVIV-THNMQQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             HHHHHHh-c-CCEEEEE-EcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence              23332 2 3566666 8888876543 3 889999999988887766

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.77  E-value=7.3e-20  Score=179.65  Aligned_cols=183  Identities=19%  Similarity=0.201  Sum_probs=121.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||+|||||+++|+|.    +.|+.|    ++.++| ..+..      .. .    +.+++++|
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~~-~~~~~------~~-~----~~~~~~~q   77 (223)
T TIGR03740        18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGI----LRPTSG----EIIFDG-HPWTR------KD-L----HKIGSLIE   77 (223)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Eeccc------cc-c----ccEEEEcC
Confidence            45677889999999999999999999999999    999999    888887 33311      01 1    35888999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++...+.     .+       ++..... ..... ..+....+..+|+.... ...+.+||+||++|+    +++++
T Consensus        78 ~~~~~~~~t~-----~~-------~~~~~~~-~~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv----~lara  138 (223)
T TIGR03740        78 SPPLYENLTA-----RE-------NLKVHTT-LLGLP-DSRIDEVLNIVDLTNTG-KKKAKQFSLGMKQRL----GIAIA  138 (223)
T ss_pred             CCCccccCCH-----HH-------HHHHHHH-HcCCC-HHHHHHHHHHcCCcHHH-hhhHhhCCHHHHHHH----HHHHH
Confidence            8765443222     00       0000000 00000 11122334456766543 445889999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEeccc
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nk  414 (537)
                      ++. +  |+++++|  |+|++..  ..++   ..+.+ .+.+++++ +|+...... ++ ++++++|++...+.+.
T Consensus       139 l~~-~--p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       139 LLN-H--PKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILS-SHILSEVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             Hhc-C--CCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence            996 5  8999999  9999332  2233   33322 23466666 888887754 33 8889999988776653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=6.1e-20  Score=183.59  Aligned_cols=210  Identities=14%  Similarity=0.094  Sum_probs=129.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      .+.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     |
T Consensus         6 ~l~~~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   63 (253)
T PRK14242          6 KMEARGLSFFYGDFQA------------------LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM----NDLIPGAR   63 (253)
T ss_pred             EEEEeeeEEEECCeee------------------ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh----cccCCCCC
Confidence            4567777777653221                  2345677889999999999999999999999997    53     5


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| .++...+   . . ...++..+++++|++.++.. +.     .+       ++...+.......  
T Consensus        64 ~~G----~i~~~g-~~i~~~~---~-~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~  120 (253)
T PRK14242         64 VEG----EILLDG-ENIYDPH---V-D-VVELRRRVGMVFQKPNPFPK-SI-----FE-------NVAYGLRVNGVKDKA  120 (253)
T ss_pred             Cce----EEEECC-EEccccc---c-C-HHHHhhcEEEEecCCCCCcC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence            899    899887 4432111   0 1 11234679999999775542 11     01       0000000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~  373 (537)
                       ...+....+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++....     ++.
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~  193 (253)
T PRK14242        121 YLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL----CIARALAV-E--PEVLLMDEPASALDPIATQKIEELIH  193 (253)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             0001111222344421   012334788999999999    99999996 5  8999999  999943322     223


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+ +. +.+++++ +|+....... + ++++++|+++..+...++
T Consensus       194 ~~-~~-~~tvii~-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        194 EL-KA-RYTIIIV-THNMQQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             HH-hc-CCeEEEE-EecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33 22 3466666 8888877543 3 889999999888776655

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=7.1e-20  Score=183.86  Aligned_cols=217  Identities=15%  Similarity=0.095  Sum_probs=136.5

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+.....                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|
T Consensus         8 ~~~i~~~~~~~~~~~~~~l------------------~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~----~~~~~G   65 (257)
T PRK14246          8 EDVFNISRLYLYINDKAIL------------------KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL----IEIYDS   65 (257)
T ss_pred             hhheeeeeEEEecCCceeE------------------eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcC
Confidence            4567888888877654333                  234577889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~  306 (537)
                          ++.++|.+.+...+.....  ...++..+++++|++.+++..+.     .+       ++...........   ..
T Consensus        66 ----~v~~~G~~~~~g~~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~  127 (257)
T PRK14246         66 ----KIKVDGKVLYFGKDIFQID--AIKLRKEVGMVFQQPNPFPHLSI-----YD-------NIAYPLKSHGIKEKREIK  127 (257)
T ss_pred             ----ceeEcCEEEECCcccccCC--HHHHhcceEEEccCCccCCCCcH-----HH-------HHHHHHHhcCCCCHHHHH
Confidence                7777763333222221111  11234678999999876543222     00       0000000000000   00


Q ss_pred             ccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHH
Q psy16304        307 DFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYL  376 (537)
Q Consensus       307 ~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~  376 (537)
                      ......+..+|+..   ......+..||+||+||+    +++++++. +  |+++++|  |+|++...     ..+..+.
T Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl----~laral~~-~--P~llllDEPt~~LD~~~~~~l~~~l~~~~  200 (257)
T PRK14246        128 KIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL----TIARALAL-K--PKVLLMDEPTSMIDIVNSQAIEKLITELK  200 (257)
T ss_pred             HHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence            01111222344421   112345788999999999    99999996 5  8999999  99983332     2223332


Q ss_pred             hcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                       + ..+++++ +|+....... + ++++++|++...++..++
T Consensus       201 -~-~~tiilv-sh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~  239 (257)
T PRK14246        201 -N-EIAIVIV-SHNPQQVARVADYVAFLYNGELVEWGSSNEI  239 (257)
T ss_pred             -c-CcEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence             2 3567777 8998887543 3 899999999988877665

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=7.1e-20  Score=186.03  Aligned_cols=196  Identities=14%  Similarity=0.125  Sum_probs=123.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| ..+.......  . ...++..+++++
T Consensus        24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~i~~~~~~~--~-~~~~~~~i~~~~   91 (280)
T PRK13649         24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL----HVPTQG----SVRVDD-TLITSTSKNK--D-IKQIRKKVGLVF   91 (280)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccccccc--C-HHHHHhheEEEe
Confidence            345677889999999999999999999999999    999999    999887 4442211000  0 112336789999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |++.  ++. .+.     .+       ++......  .............+..+|+........+.+|||||+||+    
T Consensus        92 q~~~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv----  154 (280)
T PRK13649         92 QFPESQLFE-ETV-----LK-------DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV----  154 (280)
T ss_pred             eChhhhhcc-ccH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----
Confidence            9862  221 111     01       00000000  000000001122233456653222445889999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n  413 (537)
                      +++++++. +  |++++||  |+|++..  ..+   +..+.+. +.+++++ +|+....... + ++++++|+++..+..
T Consensus       155 ~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (280)
T PRK13649        155 AIAGILAM-E--PKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLV-THLMDDVANYADFVYVLEKGKLVLSGKP  229 (280)
T ss_pred             HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999996 5  8999999  9999333  222   2333332 4566666 8888877553 3 889999999888776


Q ss_pred             cch
Q psy16304        414 KNL  416 (537)
Q Consensus       414 kdl  416 (537)
                      .++
T Consensus       230 ~~~  232 (280)
T PRK13649        230 KDI  232 (280)
T ss_pred             HHH
Confidence            655

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.76  E-value=7.2e-20  Score=179.14  Aligned_cols=181  Identities=16%  Similarity=0.124  Sum_probs=111.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+...+   .    ...+..+++++|
T Consensus        22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~~~q   85 (220)
T cd03245          22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSG----SVLLDG-TDIRQLD---P----ADLRRNIGYVPQ   85 (220)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----eEEECC-EEhHHCC---H----HHHHhhEEEeCC
Confidence            45677889999999999999999999999999    899999    888887 3332111   0    112357899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCc----------cchhhhhcCCCcee
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGK----------SSIIKRILGEPIIS  337 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gK----------s~li~~LSgG~rqr  337 (537)
                      ++.++.. +.     .+           .+...............+..+|+.+..+          ...+.+|||||+||
T Consensus        86 ~~~~~~~-tv-----~e-----------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr  148 (220)
T cd03245          86 DVTLFYG-TL-----RD-----------NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA  148 (220)
T ss_pred             CCccccc-hH-----HH-----------HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence            9875431 11     01           0000000000000001111222221110          12256899999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY  409 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~  409 (537)
                      +    .++++++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+.+..+.++ ++++++|+++.
T Consensus       149 l----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~-sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         149 V----ALARALLN-D--PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIII-THRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             H----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHhCCEEEEEeCCeEee
Confidence            9    99999996 5  8999999  9999433  2233322221 12566666 78877665444 88888998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.76  E-value=1.3e-19  Score=197.97  Aligned_cols=211  Identities=9%  Similarity=-0.037  Sum_probs=134.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...+.                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~----~~p~~G--   58 (490)
T PRK10938          3 SLQISQGTFRLSDTKTL------------------QLPSLTLNAGDSWAFVGANGSGKSALARALAGE----LPLLSG--   58 (490)
T ss_pred             eEEEEeEEEEcCCeeec------------------ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCc--
Confidence            46788888887643322                  234577889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        ++.++| ..+..++      . ......+++++|++.... .... .....      ..+.+.+..  ......+...
T Consensus        59 --~i~~~~-~~~~~~~------~-~~~~~~i~~~~q~~~~~~-~~~~-~~~~~------~~~~~~~~~--~~~~~~~~~~  118 (490)
T PRK10938         59 --ERQSQF-SHITRLS------F-EQLQKLVSDEWQRNNTDM-LSPG-EDDTG------RTTAEIIQD--EVKDPARCEQ  118 (490)
T ss_pred             --eEEECC-cccccCC------H-HHHHHHhceeccCcchhh-cccc-hhhcc------ccHHHhccc--chhHHHHHHH
Confidence              887765 2221111      1 112356899999764210 0000 00000      001111100  0001112233


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++....     ++..+.++ +.+++
T Consensus       119 ~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvi  189 (490)
T PRK10938        119 LAQQFGITALL-DRRFKYLSTGETRKT----LLCQALMS-E--PDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLV  189 (490)
T ss_pred             HHHHcCCHhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEE
Confidence            44567776543 455899999999999    99999996 5  8999999  999933322     33344333 45666


Q ss_pred             EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++ +|+.......+  ++++++|+++..+...++
T Consensus       190 i~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  222 (490)
T PRK10938        190 LV-LNRFDEIPDFVQFAGVLADCTLAETGEREEI  222 (490)
T ss_pred             EE-eCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            66 89988776544  899999999887765544

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.76  E-value=6.9e-20  Score=181.05  Aligned_cols=191  Identities=16%  Similarity=0.130  Sum_probs=125.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    +.|+.|    ++.++| .++...     ...    +..+++++
T Consensus        17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~   78 (232)
T cd03300          17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF----ETPTSG----EILLDG-KDITNL-----PPH----KRPVNTVF   78 (232)
T ss_pred             ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcCcC-----Chh----hcceEEEe
Confidence            345677889999999999999999999999999    999999    888887 433211     111    25689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.++...+.     .+       ++......  .............+..+|+.... ...+..||+||+||+    ++
T Consensus        79 q~~~~~~~~t~-----~~-------nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl----~l  141 (232)
T cd03300          79 QNYALFPHLTV-----FE-------NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-NRKPSQLSGGQQQRV----AI  141 (232)
T ss_pred             cccccCCCCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HH
Confidence            98775543222     00       00000000  00000011122334456776443 455899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkd  415 (537)
                      +++++. +  |+++++|  |+|++..     ...+..+.++...+++++ +|+..+.... + ++++++|++...+++.+
T Consensus       142 aral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~  217 (232)
T cd03300         142 ARALVN-E--PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV-THDQEEALTMSDRIAVMNKGKIQQIGTPEE  217 (232)
T ss_pred             HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence            999996 5  8999999  9999322     223344433334567777 8888876543 3 88999999988776555


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       218 ~  218 (232)
T cd03300         218 I  218 (232)
T ss_pred             H
Confidence            4

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.76  E-value=1.2e-19  Score=179.31  Aligned_cols=196  Identities=16%  Similarity=0.111  Sum_probs=119.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+..++       ....++.+++++
T Consensus        19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~   82 (234)
T cd03251          19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRF----YDVDSG----RILIDG-HDVRDYT-------LASLRRQIGLVS   82 (234)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccCCCC----EEEECC-EEhhhCC-------HHHHHhhEEEeC
Confidence            345677889999999999999999999999999    999999    898887 4332111       112346789999


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++.. +.     .| -...........+...  .. .......+..+  |+.... ...+..||+||+||+    +
T Consensus        83 q~~~~~~~-tv-----~enl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~qrv----~  148 (234)
T cd03251          83 QDVFLFND-TV-----AENIAYGRPGATREEVEEA--AR-AANAHEFIMELPEGYDTVI-GERGVKLSGGQRQRI----A  148 (234)
T ss_pred             CCCeeccc-cH-----HHHhhccCCCCCHHHHHHH--HH-HcCcHHHHHhcccCcceee-ccCCCcCCHHHHHHH----H
Confidence            99765432 11     11 0000000000000000  00 00000111111  332222 233778999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus       149 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~  223 (234)
T cd03251         149 IARALLK-D--PPILILDEATSALDTESERLVQAALERLMKNRTTFVI-AHRLSTIENADRIVVLEDGKIVERGTHEEL  223 (234)
T ss_pred             HHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHhhCCEEEEecCCeEeeeCCHHHH
Confidence            9999996 5  8999999  9999322  2222322211 13456666 78887776655 899999999877665554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=7.8e-20  Score=183.01  Aligned_cols=210  Identities=15%  Similarity=0.111  Sum_probs=130.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+...+                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.|     
T Consensus         7 ~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   64 (254)
T PRK14273          7 IIETENLNLFYTDFKA------------------LNNINIKILKNSITALIGPSGCGKSTFLRTLNRM----NDLVEGIK   64 (254)
T ss_pred             eEEEeeeEEEeCCcee------------------ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccCCcCCC
Confidence            4667888887653222                  2335677889999999999999999999999999    776     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| ..+...+    .. ...++..+++++|++.++. .+.     .+       ++...........  
T Consensus        65 ~~G----~i~~~g-~~i~~~~----~~-~~~~~~~i~~v~q~~~~~~-~tv-----~e-------ni~~~~~~~~~~~~~  121 (254)
T PRK14273         65 IEG----NVIYEG-KNIYSNN----FD-ILELRRKIGMVFQTPNPFL-MSI-----YD-------NISYGPKIHGTKDKK  121 (254)
T ss_pred             Cce----EEEECC-Eeccccc----cc-HHHHhhceEEEeecccccc-CcH-----HH-------HHHHHHHhcCCCCHH
Confidence            589    898887 4332111    01 1223467999999976542 111     11       0000000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                       ........+..+|+..   ......+..|||||+||+    +++++++. +  |+++++|  |+|++..     ...+.
T Consensus       122 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~  194 (254)
T PRK14273        122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL----CIARTLAI-E--PNVILMDEPTSALDPISTGKIEELII  194 (254)
T ss_pred             HHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcccCHHHHHHHHHHHH
Confidence             0001111122233310   112344789999999999    99999996 5  8999999  9999332     22334


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . +.+++++ +|+....... + ++++++|+++..+.++++
T Consensus       195 ~~~-~-~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        195 NLK-E-SYTIIIV-THNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHh-c-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            442 2 3566666 8888876543 3 889999999988877766

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.76  E-value=9.5e-20  Score=182.52  Aligned_cols=192  Identities=17%  Similarity=0.091  Sum_probs=122.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|    +.|    +|.++| .++..      .   ......++
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~~~G----~i~~~g-~~i~~------~---~~~~~~i~   82 (254)
T PRK10418         21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI----LPAGVRQTAG----RVLLDG-KPVAP------C---ALRGRKIA   82 (254)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCCcCC----EEEECC-eeccc------c---ccccceEE
Confidence            45677889999999999999999999999999    888    999    899887 44421      1   11225689


Q ss_pred             ccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccC--ccchhhhhcCCCceeeec
Q psy16304        264 TVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVP  340 (537)
Q Consensus       264 ~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~  340 (537)
                      +++|++. .+.....    +.+       .+...+...............+..+|+....  ....+.+|||||+||+  
T Consensus        83 ~v~q~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv--  149 (254)
T PRK10418         83 TIMQNPRSAFNPLHT----MHT-------HARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM--  149 (254)
T ss_pred             EEecCCccccCcccc----HHH-------HHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH--
Confidence            9999864 1211100    000       0000000000000001112233355655421  2344789999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g  411 (537)
                        +++++++. +  |++++||  |+|++..  .   ..++.+.++.+.+++++ +|+...... ++ ++++++|+++..+
T Consensus       150 --~laral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~-sH~~~~~~~~~d~v~~l~~G~i~~~~  223 (254)
T PRK10418        150 --MIALALLC-E--APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV-THDMGVVARLADDVAVMSHGRIVEQG  223 (254)
T ss_pred             --HHHHHHhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhCCEEEEEECCEEEEec
Confidence              99999996 5  8999999  9999433  2   23344434334567777 888887754 33 8999999998877


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      ...++
T Consensus       224 ~~~~~  228 (254)
T PRK10418        224 DVETL  228 (254)
T ss_pred             CHHHH
Confidence            76665

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=3e-19  Score=196.03  Aligned_cols=201  Identities=13%  Similarity=0.052  Sum_probs=128.2

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      +-.+++|.+.+|++++|+|+||||||||+++|+|.    .. |++|    +|.++| .++..     ... ....+..++
T Consensus       277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~~~~~G----~i~~~g-~~~~~-----~~~-~~~~~~~i~  341 (506)
T PRK13549        277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA----YPGRWEG----EIFIDG-KPVKI-----RNP-QQAIAQGIA  341 (506)
T ss_pred             cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC----CCCCCCc----EEEECC-EECCC-----CCH-HHHHHCCCE
Confidence            34567888999999999999999999999999999    88 5999    898887 43321     111 112235689


Q ss_pred             ccccCCC---CCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        264 TVSQTPL---GRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       264 ~v~Q~~~---l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      +++|++.   ++...+.  .+.+..      ...... ......-.........+..+|+........+.+|||||+||+
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~~------~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv  414 (506)
T PRK13549        342 MVPEDRKRDGIVPVMGVGKNITLAA------LDRFTG-GSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA  414 (506)
T ss_pred             EeCcchhhCCCcCCCCHHHHhhhhh------hhhhcc-CcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence            9999852   3322221  000000      000000 000000000012233455677753223555899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                          +++++++. +  |++++||  |+|++..     ..++..+.+. +.+++++ +||.......+  ++++++|+++.
T Consensus       415 ----~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~-sHd~~~~~~~~d~v~~l~~G~i~~  485 (506)
T PRK13549        415 ----VLAKCLLL-N--PKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVI-SSELPEVLGLSDRVLVMHEGKLKG  485 (506)
T ss_pred             ----HHHHHHhh-C--CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEE
Confidence                99999996 5  8999999  9999322     2233444443 4567777 99998876544  88999999988


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+...++
T Consensus       486 ~~~~~~~  492 (506)
T PRK13549        486 DLINHNL  492 (506)
T ss_pred             EeccccC
Confidence            7776654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.76  E-value=8e-20  Score=201.18  Aligned_cols=202  Identities=16%  Similarity=0.119  Sum_probs=128.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC-CcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~-g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      +-.+++|.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++ |+....+.+..  .......+..++
T Consensus       299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl----~~p~~G----~i~~~~g~~~~~~~~~~--~~~~~~~~~~i~  368 (520)
T TIGR03269       299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV----LEPTSG----EVNVRVGDEWVDMTKPG--PDGRGRAKRYIG  368 (520)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEEecCCccccccccc--hhhHHHHhhhEE
Confidence            34567888999999999999999999999999999    899999    88884 42100111110  000111235689


Q ss_pred             ccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCcc----CccchhhhhcCCCceee
Q psy16304        264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNA----GKSSIIKRILGEPIISL  338 (537)
Q Consensus       264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~----gKs~li~~LSgG~rqrv  338 (537)
                      +++|++.+++..+.     .       +++...+.. ...-....+....+..+|+.+.    .....+.+|||||+||+
T Consensus       369 ~v~q~~~l~~~~tv-----~-------e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv  436 (520)
T TIGR03269       369 ILHQEYDLYPHRTV-----L-------DNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV  436 (520)
T ss_pred             EEccCcccCCCCcH-----H-------HHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence            99998765543222     0       111100000 0000000112233445677541    12455899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                          +++++++. +  |+++++|  |+|++..     ...+..+.++.+.+++++ +||.......+  ++++++|+++.
T Consensus       437 ----~laral~~-~--p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~  508 (520)
T TIGR03269       437 ----ALAQVLIK-E--PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV-SHDMDFVLDVCDRAALMRDGKIVK  508 (520)
T ss_pred             ----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence                99999996 5  8999999  9999322     223334334445677777 89988876544  88999999988


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+.++++
T Consensus       509 ~g~~~~~  515 (520)
T TIGR03269       509 IGDPEEI  515 (520)
T ss_pred             ECCHHHH
Confidence            7766554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.76  E-value=3.4e-19  Score=169.09  Aligned_cols=153  Identities=18%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| .++..++.     ....++..+++++
T Consensus        17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-----~~~~~~~~i~~~~   82 (178)
T cd03229          17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL----EEPDSG----SILIDG-EDLTDLED-----ELPPLRRRIGMVF   82 (178)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccch-----hHHHHhhcEEEEe
Confidence            345677889999999999999999999999999    999999    999887 44432210     0112335688888


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |++.++...+                      ..+.+.           +.            ||+||+||+    .+++
T Consensus        83 q~~~~~~~~t----------------------~~~~l~-----------~~------------lS~G~~qr~----~la~  113 (178)
T cd03229          83 QDFALFPHLT----------------------VLENIA-----------LG------------LSGGQQQRV----ALAR  113 (178)
T ss_pred             cCCccCCCCC----------------------HHHhee-----------ec------------CCHHHHHHH----HHHH
Confidence            8755221111                      111000           00            999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC  406 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~  406 (537)
                      +++. +  |+++++|  |+|++...     ..+..+.++.+.+++++ +|+....... + ++++++|+
T Consensus       114 al~~-~--p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         114 ALAM-D--PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV-THDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             HHHC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCC
Confidence            9996 5  8999999  99994332     23334433324567777 8888877643 3 66676653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.76  E-value=2.3e-19  Score=173.50  Aligned_cols=168  Identities=12%  Similarity=0.091  Sum_probs=108.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|+++||+|+||||||||+++|+|.    ..|++|    ++.++| ..+...        ....+..+++++|
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~--------~~~~~~~i~~~~q   80 (201)
T cd03231          18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL----SPPLAG----RVLLNG-GPLDFQ--------RDSIARGLLYLGH   80 (201)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-Eecccc--------cHHhhhheEEecc
Confidence            45677889999999999999999999999999    999999    888886 433211        1123367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++...+.                .+.+..........+....+..+|+.... ...+.+|||||+||+    +++++
T Consensus        81 ~~~~~~~~tv----------------~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~lara  139 (201)
T cd03231          81 APGIKTTLSV----------------LENLRFWHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRV----ALARL  139 (201)
T ss_pred             ccccCCCcCH----------------HHHHHhhcccccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHH----HHHHH
Confidence            8764433221                01000000000011122233455665443 445889999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                      ++. +  |+++++|  |+|++...     ..+..+.+. +.+++++ +|+.......+
T Consensus       140 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-sH~~~~~~~~~  192 (201)
T cd03231         140 LLS-G--RPLWILDEPTTALDKAGVARFAEAMAGHCAR-GGMVVLT-THQDLGLSEAG  192 (201)
T ss_pred             Hhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCchhhhhcc
Confidence            997 5  8999999  99993322     222333333 4466666 77766555443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.76  E-value=9.8e-20  Score=179.70  Aligned_cols=191  Identities=17%  Similarity=0.105  Sum_probs=122.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|    ++|    +|.++| .++..+         ......++
T Consensus         4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~~~~~G----~i~~~g-~~~~~~---------~~~~~~i~   65 (230)
T TIGR02770         4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGL----LPPGLTQTSG----EILLDG-RPLLPL---------SIRGRHIA   65 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCccCcccc----EEEECC-Eechhh---------hhhhheeE
Confidence            45677889999999999999999999999999    888    899    888887 443211         11124689


Q ss_pred             ccccCCC-CCC-CccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCc--cCccchhhhhcCCCcee
Q psy16304        264 TVSQTPL-GRP-DSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDN--AGKSSIIKRILGEPIIS  337 (537)
Q Consensus       264 ~v~Q~~~-l~~-~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~--~gKs~li~~LSgG~rqr  337 (537)
                      +++|++. .+. ..+.     .       +++...........  ...+....+..+|+..  ......+..|||||+||
T Consensus        66 ~~~q~~~~~~~~~~t~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qr  133 (230)
T TIGR02770        66 TIMQNPRTAFNPLFTM-----G-------NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR  133 (230)
T ss_pred             EEecCchhhcCcccCH-----H-------HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHH
Confidence            9999874 121 1111     0       00000000000000  0011122334556652  11234478999999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQV  408 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii  408 (537)
                      +    +++++++. +  |++++||  |+|++...     ..+..+.++.+.+++++ +|+....... + ++++++|+++
T Consensus       134 v----~laral~~-~--p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~  205 (230)
T TIGR02770       134 V----MIALALLL-E--PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI-THDLGVVARIADEVAVMDDGRIV  205 (230)
T ss_pred             H----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEE
Confidence            9    99999996 5  8999999  99994332     23334433334567777 8988877643 3 8899999999


Q ss_pred             EEecccch
Q psy16304        409 YLISAKNL  416 (537)
Q Consensus       409 ~~g~nkdl  416 (537)
                      ..+.+.++
T Consensus       206 ~~~~~~~~  213 (230)
T TIGR02770       206 ERGTVKEI  213 (230)
T ss_pred             EeCCHHHH
Confidence            88776665

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.76  E-value=7.4e-20  Score=184.29  Aligned_cols=205  Identities=14%  Similarity=0.099  Sum_probs=142.2

Q ss_pred             ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-C----ceeeeeEEEEECCcEEEEEeecCCCchhhHH
Q psy16304        183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-P----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTI  257 (537)
Q Consensus       183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~  257 (537)
                      +.+..+++|.+++|+++||||.+||||||+.+.|.|.    .. |    +.|    ++.++| .++.-.+.   .+.+.+
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l----lp~~~~~i~~G----~i~f~g-~~l~~l~~---~~~~~i   85 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL----LPKPNARIVGG----EILFDG-KDLLSLSE---KELRKI   85 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc----cCCCCCeEeee----EEEECC-cccccCCH---HHHHhh
Confidence            4567788999999999999999999999999999998    65 2    445    888886 43322221   133355


Q ss_pred             HHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC----CccccCCccEEEeccCcc--Cccchhhhhc
Q psy16304        258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL----PLVDFRSVPILVLGLDNA--GKSSIIKRIL  331 (537)
Q Consensus       258 ~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l----~~~~~~~~~L~llGl~~~--gKs~li~~LS  331 (537)
                      ..+.++++||++.-..+-..          .-..++.+.+......    +...++...+..+|+++.  --.+++++||
T Consensus        86 RG~~I~mIfQ~p~~sLnPv~----------~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelS  155 (316)
T COG0444          86 RGKEIAMIFQDPMTSLNPVM----------TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELS  155 (316)
T ss_pred             cCceEEEEEcCchhhcCChh----------hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccC
Confidence            56789999999762111000          0011112222111111    112234455668888875  3467799999


Q ss_pred             CCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhh
Q psy16304        332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLM  402 (537)
Q Consensus       332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll  402 (537)
                      |||+||+    .+|.+++. +  |+++|.|  |.++     ..+..+++++.++.+.+++++ |||.......+  +.+|
T Consensus       156 GGMrQRV----~IAmala~-~--P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI-THDl~vva~~aDri~VM  227 (316)
T COG0444         156 GGMRQRV----MIAMALAL-N--PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-THDLGVVAEIADRVAVM  227 (316)
T ss_pred             CcHHHHH----HHHHHHhC-C--CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcceEEEE
Confidence            9999999    88888885 4  8999999  8888     344445567767677788888 89998776544  9999


Q ss_pred             cCCcEEEEecccchh
Q psy16304        403 SCNCQVYLISAKNLS  417 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~  417 (537)
                      ..|+++..|...++.
T Consensus       228 YaG~iVE~g~~~~i~  242 (316)
T COG0444         228 YAGRIVEEGPVEEIF  242 (316)
T ss_pred             ECcEEEEeCCHHHHh
Confidence            999999999988763

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=9.9e-20  Score=182.06  Aligned_cols=211  Identities=12%  Similarity=0.115  Sum_probs=131.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P---  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P---  226 (537)
                      .+.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..  |   
T Consensus         4 ~l~~~nl~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   61 (252)
T PRK14256          4 KVKLEQLNVHFGKNHA------------------VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM----HDLVPSAR   61 (252)
T ss_pred             EEEEEEEEEEeCCeeE------------------EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc----ccCCCCCC
Confidence            4566777776653222                  2345677889999999999999999999999998    65  3   


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| ..+...+.   . . ...+..+++++|++.++...+..            +++...+.......  
T Consensus        62 ~~G----~v~~~g-~~i~~~~~---~-~-~~~~~~i~~~~q~~~~~~~~tv~------------enl~~~~~~~~~~~~~  119 (252)
T PRK14256         62 VTG----KILLDD-TDIYDRGV---D-P-VSIRRRVGMVFQKPNPFPAMSIY------------DNVIAGYKLNGRVNRS  119 (252)
T ss_pred             Cce----EEEECC-EEcccccC---C-h-HHhhccEEEEecCCCCCCcCcHH------------HHHHhHHHhcCCCCHH
Confidence            689    888887 44321111   0 1 12236799999997765432220            00000000000000  


Q ss_pred             -ccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 -LVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                       ........+..+|+...   .....+.+||+||+||+    +++++++. +  |+++++|  |+|++..     ..+++
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl----~laral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~  192 (252)
T PRK14256        120 EADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL----CIARTIAV-K--PEVILMDEPASALDPISTLKIEELIE  192 (252)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHH
Confidence             00011122223444220   11234788999999999    99999996 5  8999999  9998332     23334


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+  +.+++++ +|+....... + ++++++|++...+..+++
T Consensus       193 ~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14256        193 ELKE--KYTIIIV-THNMQQAARVSDYTAFFYMGDLVECGETKKI  234 (252)
T ss_pred             HHHh--CCcEEEE-ECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            4432  3566666 8998877543 3 888999999988877665

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.76  E-value=1.1e-19  Score=176.04  Aligned_cols=175  Identities=14%  Similarity=0.080  Sum_probs=109.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| ..+..+..   .......++.+++++
T Consensus        15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~   82 (206)
T TIGR03608        15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL----EKFDSG----QVYLNG-KETPPLNS---KKASKFRREKLGYLF   82 (206)
T ss_pred             eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCe----EEEECC-EEccccch---hhHHHHHHhCeeEEe
Confidence            345677889999999999999999999999999    999999    899887 44321111   011112346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++.+++..+..     +       ++......  ........+....+..+|+.... ...+.+||+||+||+    ++
T Consensus        83 q~~~~~~~~t~~-----e-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qr~----~l  145 (206)
T TIGR03608        83 QNFALIENETVE-----E-------NLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-KQKIYELSGGEQQRV----AL  145 (206)
T ss_pred             cchhhccCCcHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-cCChhhCCHHHHHHH----HH
Confidence            997765432220     0       00000000  00000001112234456665443 445889999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhh
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~  395 (537)
                      +++++. +  |+++++|  |+|++..  ..+   ++.+.+. +.+++++ +|+.....
T Consensus       146 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~  198 (206)
T TIGR03608       146 ARAILK-D--PPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIV-THDPEVAK  198 (206)
T ss_pred             HHHHHc-C--CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHh
Confidence            999996 5  8999999  9999322  222   2333333 4456666 78776443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.76  E-value=7.9e-20  Score=201.24  Aligned_cols=201  Identities=15%  Similarity=0.099  Sum_probs=126.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECC----------------------cEE
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGN----------------------KYE  242 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g----------------------~~~  242 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    .  .|+.|    +|.+++                      +.+
T Consensus        17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~~~p~~G----~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~   88 (520)
T TIGR03269        17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM----DQYEPTSG----RIIYHVALCEKCGYVERPSKVGEPCPVCGGT   88 (520)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----ccCCCCce----EEEEecccccccccccccccccccccccccc
Confidence            345677889999999999999999999999998    6  69999    877752                      011


Q ss_pred             EEE--eecCC-CchhhHHHHhhhhccccC-CCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEE
Q psy16304        243 VFL--YDLGG-SEDFRTIWKQYLGTVSQT-PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILV  315 (537)
Q Consensus       243 i~~--~D~~G-~~~~r~~~~~~i~~v~Q~-~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~l  315 (537)
                      +..  .+... .......++..+++++|+ ..++...+.            .+++...+... .+.   ...+....+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv------------~~~l~~~~~~~-~~~~~~~~~~~~~~l~~  155 (520)
T TIGR03269        89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV------------LDNVLEALEEI-GYEGKEAVGRAVDLIEM  155 (520)
T ss_pred             ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence            100  01100 001112234668999997 444433221            01111000000 010   01122334556


Q ss_pred             eccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHH-----HHHHHhcCCEEEEEEeC
Q psy16304        316 LGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTI-----WKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       316 lGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l-----~~~~~~~~~~vIlVvds  388 (537)
                      +|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |++++.....     ++++.++.+.+++++ +
T Consensus       156 ~gl~~~~-~~~~~~LSgGq~qrv----~iA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv-t  226 (520)
T TIGR03269       156 VQLSHRI-THIARDLSGGEKQRV----VLARQLAK-E--PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT-S  226 (520)
T ss_pred             cCChhhh-hcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-e
Confidence            7776543 445899999999999    99999996 5  8999999  9999443332     345544445567777 8


Q ss_pred             CCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        389 LSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       389 hd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ||.......+  ++++++|+++..+...++.
T Consensus       227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  257 (520)
T TIGR03269       227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVV  257 (520)
T ss_pred             CCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence            9998876543  8899999988776655553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.1e-19  Score=199.32  Aligned_cols=209  Identities=12%  Similarity=0.053  Sum_probs=133.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++..+                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.|++|  
T Consensus         4 ~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G--   59 (501)
T PRK11288          4 YLSFDGIGKTFPGVKA------------------LDDISFDCRAGQVHALMGENGAGKSTLLKILSGN----YQPDAG--   59 (501)
T ss_pred             eEEEeeeEEEECCEEE------------------EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCC--
Confidence            4567778777654222                  2345677889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                        +|.++| .++...     . ....++..+++++|++.+++..+.  .+.+..         ...............+.
T Consensus        60 --~I~~~g-~~i~~~-----~-~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~---------~~~~~~~~~~~~~~~~~  121 (501)
T PRK11288         60 --SILIDG-QEMRFA-----S-TTAALAAGVAIIYQELHLVPEMTVAENLYLGQ---------LPHKGGIVNRRLLNYEA  121 (501)
T ss_pred             --EEEECC-EECCCC-----C-HHHHHhCCEEEEEechhccCCCCHHHHHHhcc---------cccccCCCCHHHHHHHH
Confidence              888886 433211     1 112334679999998775544322  100000         00000000000001112


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~v  382 (537)
                      ...+..+|+.... ...+.+|||||+||+    +++++++. +  |++++||  |+|++...  .++   ..+.+ .+.+
T Consensus       122 ~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~t  192 (501)
T PRK11288        122 REQLEHLGVDIDP-DTPLKYLSIGQRQMV----EIAKALAR-N--ARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRV  192 (501)
T ss_pred             HHHHHHcCCCCCc-CCchhhCCHHHHHHH----HHHHHHHh-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            2334466776443 455899999999999    99999996 5  8999999  99994332  222   33322 3456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      ++++ +|+.......+  ++++++|+++..+.
T Consensus       193 iiii-tHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        193 ILYV-SHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             EEEE-eCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            7777 89988776543  89999999876543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.2e-19  Score=183.17  Aligned_cols=210  Identities=13%  Similarity=0.122  Sum_probs=129.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|++....                  .++++.+.+|++++|+|+||||||||+++|+|.    ..     |
T Consensus        21 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   78 (268)
T PRK14248         21 ILEVKDLSIYYGEKRAV------------------NDISMDIEKHAVTALIGPSGCGKSTFLRSINRM----NDLIPSAR   78 (268)
T ss_pred             eEEEEEEEEEeCCceee------------------eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----ccccCCCC
Confidence            46778888877543222                  234577889999999999999999999999997    43     7


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    ++.++| .++...+    .. ...++..+++++|++.++.. +.     .+       ++...+.......  
T Consensus        79 ~~G----~i~~~g-~~i~~~~----~~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~  135 (268)
T PRK14248         79 SEG----EILYEG-LNILDSN----IN-VVNLRREIGMVFQKPNPFPK-SI-----YN-------NITHALKYAGERRKS  135 (268)
T ss_pred             Cce----EEEECC-EEccccc----cc-HHHHhccEEEEecCCccCcc-cH-----HH-------HHHHHHHhcCCCcHH
Confidence            899    888887 4432111    00 11233679999999875542 11     11       0000000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~  373 (537)
                       ........+..+|+..   ......+.+|||||+||+    +++++++. +  |++++||  |+|++...     .++.
T Consensus       136 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~  208 (268)
T PRK14248        136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL----CIARTLAM-K--PAVLLLDEPASALDPISNAKIEELIT  208 (268)
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH----HHHHHHhC-C--CCEEEEcCCCcccCHHHHHHHHHHHH
Confidence             0000011111223211   112344788999999999    99999996 5  8999999  99993322     2333


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus       209 ~~~-~-~~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        209 ELK-E-EYSIIIV-THNMQQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             HHh-c-CCEEEEE-EeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            432 2 3566666 8888876543 3 899999999888776665

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.76  E-value=7.8e-20  Score=201.66  Aligned_cols=198  Identities=13%  Similarity=0.079  Sum_probs=128.3

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.++++.+.+|++++|+|+||||||||+++|+|.    . |++|    +|.++| .++..++.   ... ..++..+++
T Consensus       301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl----~-~~~G----~i~~~g-~~i~~~~~---~~~-~~~~~~i~~  366 (529)
T PRK15134        301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL----I-NSQG----EIWFDG-QPLHNLNR---RQL-LPVRHRIQV  366 (529)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc----C-CCCc----EEEECC-EEccccch---hhH-HHhhhceEE
Confidence            34567888999999999999999999999999998    6 5899    999887 54432211   111 112356899


Q ss_pred             cccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        265 VSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       265 v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      ++|++.  +++..+.     .       +++...+.... .+.   ...+....+..+|+........+.+|||||+||+
T Consensus       367 v~q~~~~~l~~~~tv-----~-------e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  434 (529)
T PRK15134        367 VFQDPNSSLNPRLNV-----L-------QIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI  434 (529)
T ss_pred             EEeCchhhcCCcccH-----H-------HHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence            999863  3332221     0       00100000000 000   0111223344677753223455899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                          +++++++. +  |++++||  |+|++..     ..++.++.++.+.+++++ +||.......+  ++++++|+++.
T Consensus       435 ----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~  506 (529)
T PRK15134        435 ----AIARALIL-K--PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFI-SHDLHVVRALCHQVIVLRQGEVVE  506 (529)
T ss_pred             ----HHHHHHhC-C--CCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEE
Confidence                99999996 5  8999999  9999333     223344433434567777 89988776543  89999999988


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+...++
T Consensus       507 ~~~~~~~  513 (529)
T PRK15134        507 QGDCERV  513 (529)
T ss_pred             EcCHHHH
Confidence            8776665

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.1e-19  Score=181.47  Aligned_cols=211  Identities=12%  Similarity=0.105  Sum_probs=129.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C--
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P--  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P--  226 (537)
                      .++.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..  |  
T Consensus         4 ~~l~~~~l~~~~~~~~~------------------l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~   61 (252)
T PRK14239          4 PILQVSDLSVYYNKKKA------------------LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRM----NDLNPEV   61 (252)
T ss_pred             ceEEEEeeEEEECCeee------------------eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cccCCCC
Confidence            35677888887654222                  2334577889999999999999999999999997    53  5  


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~  305 (537)
                       ++|    +|.++| ..+...+   . . ...++..+++++|++.++. .+.     .+       ++............
T Consensus        62 ~~~G----~i~~~g-~~~~~~~---~-~-~~~~~~~i~~v~q~~~~~~-~tv-----~e-------nl~~~~~~~~~~~~  118 (252)
T PRK14239         62 TITG----SIVYNG-HNIYSPR---T-D-TVDLRKEIGMVFQQPNPFP-MSI-----YE-------NVVYGLRLKGIKDK  118 (252)
T ss_pred             Cccc----eEEECC-EECcCcc---c-c-hHhhhhcEEEEecCCccCc-CcH-----HH-------HHHHHHHHcCCCcH
Confidence             589    888887 4332100   0 0 1123367999999977553 111     01       00000000000000


Q ss_pred             ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHH
Q psy16304        306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIW  372 (537)
Q Consensus       306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~  372 (537)
                         .......+..+|+..   ......+.+||+||+||+    +++++++. +  |+++++|  |+|++..     ..++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l  191 (252)
T PRK14239        119 QVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV----CIARVLAT-S--PKIILLDEPTSALDPISAGKIEETL  191 (252)
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHH
Confidence               000111122333321   112344788999999999    99999996 5  8999999  9999332     2222


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+. . +.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus       192 ~~~~-~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        192 LGLK-D-DYTMLLV-TRSMQQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             HHHh-h-CCeEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3332 2 3566666 888877654 33 899999999988877766

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=8.4e-20  Score=185.30  Aligned_cols=213  Identities=12%  Similarity=0.075  Sum_probs=135.4

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   .            ..+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|++|  
T Consensus         4 ~l~~~~l~~~~~~~~---~------------~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~G--   62 (277)
T PRK13642          4 ILEVENLVFKYEKES---D------------VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL----FEEFEG--   62 (277)
T ss_pred             eEEEEEEEEEcCCCC---c------------CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCC--
Confidence            456788888765311   0            0122345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCcccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~  308 (537)
                        +|.++| ..+..   .   .. ...+..+++++|++. .+...+.     .+       ++.....  ..........
T Consensus        63 --~i~~~g-~~i~~---~---~~-~~~~~~i~~v~q~~~~~~~~~tv-----~e-------ni~~~~~~~~~~~~~~~~~  120 (277)
T PRK13642         63 --KVKIDG-ELLTA---E---NV-WNLRRKIGMVFQNPDNQFVGATV-----ED-------DVAFGMENQGIPREEMIKR  120 (277)
T ss_pred             --EEEECC-EECCc---C---CH-HHHhcceEEEEECHHHhhccCCH-----HH-------HHHhhHHHcCCCHHHHHHH
Confidence              999887 43321   1   11 123367999999863 2221111     00       0000000  0000000011


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ...+..+.++.+.
T Consensus       121 ~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~lAraL~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~  192 (277)
T PRK13642        121 VDEALLAVNMLDFK-TREPARLSGGQKQRV----AVAGIIAL-R--PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL  192 (277)
T ss_pred             HHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            12233456665543 445889999999999    99999996 5  8999999  9998322     2233444443345


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +|+......++ ++++++|+++..+...++
T Consensus       193 tiil~-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (277)
T PRK13642        193 TVLSI-THDLDEAASSDRILVMKAGEIIKEAAPSEL  227 (277)
T ss_pred             EEEEE-eCCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            66666 78887766544 899999999888877665

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.76  E-value=1.5e-19  Score=200.51  Aligned_cols=263  Identities=13%  Similarity=0.095  Sum_probs=157.9

Q ss_pred             hhhHHHHHhhhcccccccccccccccCccccccccC-CCCCCch-hHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLS-DDPAPTF-EVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~-~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      .-..|+..+...++.++.+..+++|+.++++..... ..++.+- ...  ......-....+.++++...|++...... 
T Consensus       279 ~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~f~y~~~~~~~~-  355 (555)
T TIGR01194       279 YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNV--LLLAHDKSVDSIELKDVHMNPKAPEGSEG-  355 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc--cccccCCCCceEEEEEEEEEeCCCCCCcC-
Confidence            347899999999999999999999999887521110 0000000 000  00000000123566777777653210000 


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                  .+-.++++.+++|++++|+||||+|||||+++|+|.    +.|++|    +|.++| .++..++.   
T Consensus       356 ------------~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~----~~p~~G----~i~~~g-~~i~~~~~---  411 (555)
T TIGR01194       356 ------------FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL----YIPQEG----EILLDG-AAVSADSR---  411 (555)
T ss_pred             ------------ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECCCCCH---
Confidence                        112456788889999999999999999999999999    999999    999987 54433222   


Q ss_pred             chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhc
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRIL  331 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LS  331 (537)
                          ..++..+++++|++.++......-. ..+.+.++   +.+.++..+ +      ...+..+  ++ |-+. ...||
T Consensus       412 ----~~~~~~i~~v~q~~~lf~~ti~~n~-~~~~~~~~---~~~~~~~~~-l------~~~~~~l--p~-g~~t-~~~LS  472 (555)
T TIGR01194       412 ----DDYRDLFSAIFADFHLFDDLIGPDE-GEHASLDN---AQQYLQRLE-I------ADKVKIE--DG-GFST-TTALS  472 (555)
T ss_pred             ----HHHHhhCcEEccChhhhhhhhhccc-ccchhHHH---HHHHHHHcC-C------chhhccc--cc-ccCC-cccCC
Confidence                2334789999999887754221000 00000000   111111100 0      0000000  11 1111 36799


Q ss_pred             CCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHH---hcCCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYL---GTVSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~---~~~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      |||+||+    +++|+++. +  |+++++|  |++++...+  +.+.+.   +..+.+++++ +|+......++ +++++
T Consensus       473 gGq~qRl----alaRall~-~--~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiii-sH~~~~~~~~d~i~~l~  544 (555)
T TIGR01194       473 TGQQKRL----ALICAWLE-D--RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIII-SHDDQYFELADQIIKLA  544 (555)
T ss_pred             HHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHhCCEEEEEE
Confidence            9999999    99999996 5  8999999  999944332  334332   2234566666 78877776666 88999


Q ss_pred             CCcEEEE
Q psy16304        404 CNCQVYL  410 (537)
Q Consensus       404 ~G~ii~~  410 (537)
                      +|+++..
T Consensus       545 ~G~i~~~  551 (555)
T TIGR01194       545 AGCIVKD  551 (555)
T ss_pred             CCEEEEe
Confidence            9998653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=9.7e-20  Score=183.08  Aligned_cols=211  Identities=14%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----  225 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----  225 (537)
                      .++.++++.+.|++..+                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     
T Consensus        12 ~~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~   69 (260)
T PRK10744         12 SKIQVRNLNFYYGKFHA------------------LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM----YELYPEQ   69 (260)
T ss_pred             ceEEEEEEEEEeCCeEE------------------eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCC
Confidence            35667888887654221                  2335677889999999999999999999999998    65     


Q ss_pred             CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304        226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~  305 (537)
                      |+.|    +|.++| ..+...+.    . ...++..+++++|++.++. .+.     .+       ++.........+..
T Consensus        70 p~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~-~tv-----~~-------nl~~~~~~~~~~~~  126 (260)
T PRK10744         70 RAEG----EILLDG-ENILTPKQ----D-IALLRAKVGMVFQKPTPFP-MSI-----YD-------NIAFGVRLFEKLSR  126 (260)
T ss_pred             Ccce----EEEECC-EEcccccc----c-hHHHhcceEEEecCCccCc-CcH-----HH-------HHhhhHhhcCCCCH
Confidence            5899    899887 44321110    1 1123367999999977543 111     01       00000000000000


Q ss_pred             ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HH
Q psy16304        306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IW  372 (537)
Q Consensus       306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~  372 (537)
                         ..+....+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++....     .+
T Consensus       127 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L  199 (260)
T PRK10744        127 AEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL----CIARGIAI-R--PEVLLLDEPCSALDPISTGRIEELI  199 (260)
T ss_pred             HHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH----HHHHHHHC-C--CCEEEEcCCCccCCHHHHHHHHHHH
Confidence               011112233444321   112334788999999999    99999996 5  8999999  999943322     22


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .++. . +.+++++ +|+....... + ++++++|+++..+...++
T Consensus       200 ~~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (260)
T PRK10744        200 TELK-Q-DYTVVIV-THNMQQAARCSDYTAFMYLGELIEFGNTDTI  242 (260)
T ss_pred             HHHh-c-CCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3332 2 3466666 8888877543 3 889999999988776665

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=1.5e-19  Score=175.07  Aligned_cols=172  Identities=12%  Similarity=0.109  Sum_probs=110.4

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+...        .......+++++
T Consensus        18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~v~~~g-~~~~~~--------~~~~~~~~~~~~   80 (204)
T PRK13538         18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL----ARPDAG----EVLWQG-EPIRRQ--------RDEYHQDLLYLG   80 (204)
T ss_pred             ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEcccc--------hHHhhhheEEeC
Confidence            345677889999999999999999999999999    999999    898887 443211        112235688888


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |.+.+++..+.            .+++........ ..........+..+|+.... ...+..|||||+||+    ++++
T Consensus        81 ~~~~~~~~~tv------------~e~l~~~~~~~~-~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl----~la~  142 (204)
T PRK13538         81 HQPGIKTELTA------------LENLRFYQRLHG-PGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRV----ALAR  142 (204)
T ss_pred             CccccCcCCcH------------HHHHHHHHHhcC-ccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHH----HHHH
Confidence            88665433222            000000000000 00111122334456665443 445889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                      +++. +  |+++++|  |+|++...  .   ++..+.+. ..+++++ +|+..+.+.+.
T Consensus       143 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~i~~~~  196 (204)
T PRK13538        143 LWLT-R--APLWILDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILT-THQDLPVASDK  196 (204)
T ss_pred             HHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecChhhhccCC
Confidence            9997 5  8999999  99993332  2   22333332 4566666 88888776543

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.75  E-value=1.5e-19  Score=200.29  Aligned_cols=250  Identities=12%  Similarity=0.067  Sum_probs=155.9

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCCC-chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP-TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT  174 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~  174 (537)
                      ..|+..++..+..++....+++|+.+++..+...+.+.+ +...           ...+.++++...|++..    +   
T Consensus       276 ~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~-----------~~~i~~~~v~f~y~~~~----~---  337 (547)
T PRK10522        276 RTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPD-----------WQTLELRNVTFAYQDNG----F---  337 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCc-----------CceEEEEEEEEEeCCCC----e---
Confidence            479999999999999999999999888653221110111 1000           11356777777664321    0   


Q ss_pred             hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                                +-.++++.+++|++++|+|+||+|||||+++|+|.    ++|+.|    +|.++| .++..++.      
T Consensus       338 ----------~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g-~~~~~~~~------  392 (547)
T PRK10522        338 ----------SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL----YQPQSG----EILLDG-KPVTAEQP------  392 (547)
T ss_pred             ----------EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EECCCCCH------
Confidence                      12345677889999999999999999999999999    999999    999987 54432222      


Q ss_pred             hHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304        255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP  334 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~  334 (537)
                       ..+++.+++++|++.++......-  ..+.+.+.   +.+.++.   ......    +. .+....+    -..|||||
T Consensus       393 -~~~~~~i~~v~q~~~lf~~ti~~n--~~~~~~~~---~~~~~~~---~~l~~~----~~-~~~~~~~----G~~LSgGq  454 (547)
T PRK10522        393 -EDYRKLFSAVFTDFHLFDQLLGPE--GKPANPAL---VEKWLER---LKMAHK----LE-LEDGRIS----NLKLSKGQ  454 (547)
T ss_pred             -HHHhhheEEEecChhHHHHhhccc--cCchHHHH---HHHHHHH---cCCchh----hh-ccccCCC----CCCCCHHH
Confidence             234478999999988765421100  00000000   1111111   100000    00 0100000    23699999


Q ss_pred             ceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHH---hcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYL---GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~---~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      +||+    ++||+++. +  |+++++|  |++++...+  +++.+.   +..+.+++++ +|+.+....++ ++++++|+
T Consensus       455 ~qRl----~lARal~~-~--~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i-tH~~~~~~~~d~i~~l~~G~  526 (547)
T PRK10522        455 KKRL----ALLLALAE-E--RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI-SHDDHYFIHADRLLEMRNGQ  526 (547)
T ss_pred             HHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE-EechHHHHhCCEEEEEECCE
Confidence            9999    99999996 5  8999999  999944333  333332   2234566666 67777666665 88999999


Q ss_pred             EEEEeccc
Q psy16304        407 QVYLISAK  414 (537)
Q Consensus       407 ii~~g~nk  414 (537)
                      +....+.+
T Consensus       527 i~e~~~~~  534 (547)
T PRK10522        527 LSELTGEE  534 (547)
T ss_pred             EEEecCCc
Confidence            88765544

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=9.2e-20  Score=184.01  Aligned_cols=211  Identities=15%  Similarity=0.125  Sum_probs=132.9

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      ..+.++++.+.|+...                  +-.++++.+.+|++++|+|+||||||||+++|+|.    ..|    
T Consensus        18 ~~l~~~nl~~~~~~~~------------------il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~   75 (267)
T PRK14235         18 IKMRARDVSVFYGEKQ------------------ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM----NDTIDGC   75 (267)
T ss_pred             ceEEEEeEEEEECCEE------------------EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccccCC
Confidence            4567788888765321                  12345677889999999999999999999999998    764    


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccc--cc--C
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SA--T  301 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~--~  301 (537)
                       +.|    +|.++| ..+...+.    . ...++..+++++|++.++.. +.     .+       ++.....  ..  .
T Consensus        76 ~~~G----~I~~~g-~~i~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~  132 (267)
T PRK14235         76 RVTG----KITLDG-EDIYDPRL----D-VVELRARVGMVFQKPNPFPK-SI-----YE-------NVAYGPRIHGLARS  132 (267)
T ss_pred             CCce----EEEECC-EECccccc----c-hHHHhhceEEEecCCCCCCC-cH-----HH-------HHHHHHHhcccccc
Confidence             899    899887 44321110    0 11234678999999775542 11     11       0000000  00  0


Q ss_pred             cCCccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HH
Q psy16304        302 HLPLVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TI  371 (537)
Q Consensus       302 ~l~~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l  371 (537)
                      ...........+..+|+...   .....+.+|||||+||+    +++++++. +  |++++||  |+|++...     ..
T Consensus       133 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~  205 (267)
T PRK14235        133 KAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL----CIARAIAV-S--PEVILMDEPCSALDPIATAKVEEL  205 (267)
T ss_pred             hHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHH
Confidence            00000111222334555321   12334788999999999    99999997 5  8999999  99994332     23


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++.+. . +.+++++ +|+.......+  ++++++|+++..+..+++
T Consensus       206 L~~l~-~-~~tiiiv-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  249 (267)
T PRK14235        206 IDELR-Q-NYTIVIV-THSMQQAARVSQRTAFFHLGNLVEVGDTEKM  249 (267)
T ss_pred             HHHHh-c-CCeEEEE-EcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            33332 2 3466666 88888776543  888999999888776665

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.1e-19  Score=198.29  Aligned_cols=211  Identities=13%  Similarity=0.124  Sum_probs=129.1

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++++++.|+...+.                  .+++|.+.+|++++|+|+||||||||+++|+|.    ..|+.|   
T Consensus         2 l~i~~ls~~~~~~~il------------------~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl----~~p~~G---   56 (530)
T PRK15064          2 LSTANITMQFGAKPLF------------------ENISVKFGGGNRYGLIGANGCGKSTFMKILGGD----LEPSAG---   56 (530)
T ss_pred             EEEEEEEEEeCCcEeE------------------eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence            4567777766543222                  345677889999999999999999999999999    899999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEe--------------e-c--Ccc---cc
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLI--------------M-C--GVH---QV  290 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~--------------D-s--~~~---~~  290 (537)
                       ++.+++...                   +++++|++.++...+.  .+.+..              . .  ...   .+
T Consensus        57 -~i~~~~~~~-------------------i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (530)
T PRK15064         57 -NVSLDPNER-------------------LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV  116 (530)
T ss_pred             -eEEecCCCE-------------------EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHH
Confidence             887765222                   4445554433221110  000000              0 0  000   00


Q ss_pred             cCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH
Q psy16304        291 SGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF  368 (537)
Q Consensus       291 ~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~  368 (537)
                      ......+.....+....+....+..+|+........+.+|||||+||+    +++++++. +  |++++||  |+|++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv----~lA~aL~~-~--p~lLlLDEPt~~LD~~  189 (530)
T PRK15064        117 ADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV----LLAQALFS-N--PDILLLDEPTNNLDIN  189 (530)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCcccCHH
Confidence            000000000111111112233455677764333345889999999999    99999996 5  8999999  9999554


Q ss_pred             HHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEE-EEecccch
Q psy16304        369 RTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQV-YLISAKNL  416 (537)
Q Consensus       369 ~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii-~~g~nkdl  416 (537)
                      ...| .+++++.+.+|+++ +||.......+  ++++++|+++ ..|...++
T Consensus       190 ~~~~l~~~l~~~~~tiiiv-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  240 (530)
T PRK15064        190 TIRWLEDVLNERNSTMIII-SHDRHFLNSVCTHMADLDYGELRVYPGNYDEY  240 (530)
T ss_pred             HHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence            4434 45555545677777 89998877644  8999999985 44444444

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.6e-19  Score=180.48  Aligned_cols=211  Identities=12%  Similarity=0.083  Sum_probs=131.1

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      +++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|    
T Consensus         3 ~~l~~~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~~~   60 (251)
T PRK14270          3 IKMESKNLNLWYGEKQA------------------LNDINLPIYENKITALIGPSGCGKSTFLRCLNRM----NDLISNV   60 (251)
T ss_pred             cEEEEEEeEEEECCeee------------------eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCcccCC
Confidence            45667788877653221                  2335677889999999999999999999999998    664    


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc--C
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--L  303 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l  303 (537)
                       ++|    +|.++| .++...+   ..  ....+..+++++|++.++. .+..     +       ++.........  .
T Consensus        61 ~~~G----~i~~~g-~~i~~~~---~~--~~~~~~~i~~~~q~~~~~~-~tv~-----e-------nl~~~~~~~~~~~~  117 (251)
T PRK14270         61 KIEG----EVLLDG-KNIYDKD---VD--VVELRKRVGMVFQKPNPFP-MSIY-----D-------NVAYGPRIHGIKDK  117 (251)
T ss_pred             CCcc----EEEECC-Eeccccc---cc--HHHHHhheEEEecCCCcCC-CcHH-----H-------HHHhHHHhcCCCcH
Confidence             789    899887 4442110   00  1122367999999987553 2210     0       00000000000  0


Q ss_pred             -CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHH
Q psy16304        304 -PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIW  372 (537)
Q Consensus       304 -~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~  372 (537)
                       ....+....+..+|+..   ......+..||+||+||+    +++++++. +  |+++++|  |+|++..  .   .++
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~L  190 (251)
T PRK14270        118 KELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL----CIARTIAV-K--PDVILMDEPTSALDPISTLKIEDLM  190 (251)
T ss_pred             HHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence             00001111222344321   112334788999999999    99999996 5  8999999  9999332  2   233


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+.+  ..+++++ +|+.......+  ++++++|+++..+.+.++
T Consensus       191 ~~~~~--~~tiiiv-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        191 VELKK--EYTIVIV-THNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHh--CCeEEEE-EcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            34433  2566666 78888765533  899999999988877665

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=4e-19  Score=161.55  Aligned_cols=213  Identities=15%  Similarity=0.112  Sum_probs=141.5

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.+.++..+||+.+...|-                  .+.-..|+.+.|+||+|||||||++.|.-.    ..|.+|   
T Consensus         3 irv~~in~~yg~~q~lfdi------------------~l~~~~getlvllgpsgagkssllr~lnll----e~p~sg---   57 (242)
T COG4161           3 IQLNGINCFYGAHQALFDI------------------TLDCPEGETLVLLGPSGAGKSSLLRVLNLL----EMPRSG---   57 (242)
T ss_pred             eEEcccccccccchheeee------------------eecCCCCCEEEEECCCCCchHHHHHHHHHH----hCCCCC---
Confidence            5677888899988766652                  244568999999999999999999999988    789999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccC
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFR  309 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~  309 (537)
                       +..+.+ -.+.+-.+++.... ...++..|+|||...+++.++.            .+++-+.-....++.   ...++
T Consensus        58 -~l~ia~-~~fd~s~~~~~k~i-~~lr~~vgmvfqqy~lwphltv------------~enlieap~kv~gl~~~qa~~~a  122 (242)
T COG4161          58 -TLNIAG-NHFDFSKTPSDKAI-RDLRRNVGMVFQQYNLWPHLTV------------QENLIEAPCRVLGLSKDQALARA  122 (242)
T ss_pred             -eEEecc-cccccccCccHHHH-HHHHHhhhhhhhhhccCchhHH------------HHHHHhhhHHHhCCCHHHHHHHH
Confidence             888876 34444344443222 3345789999999998887665            122211111111111   11222


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-hHH----HHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-DFR----TIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-~~~----~l~~~~~~~~~~v  382 (537)
                      ...+..+.+.... +.++-.||||++||+    +++++++. .  |+++++|  |+.++ ++.    .+++++...+-+-
T Consensus       123 ~ellkrlrl~~~a-dr~plhlsggqqqrv----aiaralmm-k--pqvllfdeptaaldpeitaqvv~iikel~~tgitq  194 (242)
T COG4161         123 EKLLKRLRLKPYA-DRYPLHLSGGQQQRV----AIARALMM-E--PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQ  194 (242)
T ss_pred             HHHHHHhcccccc-ccCceecccchhhhH----HHHHHHhc-C--CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceE
Confidence            2333344455444 566889999999999    99999996 5  8999999  88883 222    2334443333334


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      ++|  +|.........  ++.|++|+++..|...-
T Consensus       195 viv--thev~va~k~as~vvyme~g~ive~g~a~~  227 (242)
T COG4161         195 VIV--THEVEVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             EEE--EeehhHHHhhhhheEeeecCeeEeecchhh
Confidence            444  56655555444  88999999999887543

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=3.2e-19  Score=169.31  Aligned_cols=201  Identities=20%  Similarity=0.188  Sum_probs=132.4

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -..+++.+.+|+++.++|.||||||||++.|+|.    ..||+|    +|.++| .++.-+..   ..    ...+++-|
T Consensus        22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~----l~~t~G----~I~Idg-~dVtk~~~---~~----RA~~larV   85 (263)
T COG1101          22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD----LKPTSG----QILIDG-VDVTKKSV---AK----RANLLARV   85 (263)
T ss_pred             HhcCceeecCCceEEEEcCCCccHHHHHHHhhCc----cccCCc----eEEECc-eecccCCH---HH----HhhHHHHH
Confidence            3456788889999999999999999999999999    999999    999997 77665544   11    12678889


Q ss_pred             ccCCCCC--CCccceee-EEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPLGR--PDSRTCQV-YLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~--~~~~~~il-~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      ||+|..-  +.++-.-- ...+ .+.....+...+  -.......+......-+|+.+...+. +.-|||||||.+    
T Consensus        86 fQdp~~gt~~~lTieENl~la~-~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~-iglLSGGQRQal----  157 (263)
T COG1101          86 FQDPLAGTAPELTIEENLALAE-SRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDR-IGLLSGGQRQAL----  157 (263)
T ss_pred             hcchhhCCcccccHHHHHHHHH-hcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcCh-hhhccchHHHHH----
Confidence            9998621  11111000 0000 000000000000  00000011122233467777776444 899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                      .+..+.++ +  |++++||  |+.+     +...+..+++.++.+.+.+++ +|++..+...-  .++++.|+|+.+..-
T Consensus       158 sL~MAtl~-~--pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMV-THnm~~Al~yG~RlImLh~G~IvlDv~g  233 (263)
T COG1101         158 SLLMATLH-P--PKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRLIMLHSGKIVLDVTG  233 (263)
T ss_pred             HHHHHhcC-C--CcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEE-eccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence            77777776 5  8999999  9998     444555678888888777777 78877665544  888999999887654


Q ss_pred             c
Q psy16304        414 K  414 (537)
Q Consensus       414 k  414 (537)
                      .
T Consensus       234 ~  234 (263)
T COG1101         234 E  234 (263)
T ss_pred             c
Confidence            3

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.3e-19  Score=181.09  Aligned_cols=211  Identities=15%  Similarity=0.140  Sum_probs=130.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT----  227 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt----  227 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||+|||||+++|+|.    +.|+    
T Consensus         4 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~   61 (252)
T PRK14272          4 LLSAQDVNIYYGDKQA------------------VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM----HDLTPGAR   61 (252)
T ss_pred             EEEEeeeEEEECCEEe------------------eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCcCCC
Confidence            4567778777653222                  2345677889999999999999999999999998    7764    


Q ss_pred             -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCC
Q psy16304        228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLP  304 (537)
Q Consensus       228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~  304 (537)
                       +|    +|.++| .++...+.   .  ...++..+++++|++.++...+.     .+       ++........  ...
T Consensus        62 ~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i~~~~q~~~~~~~~t~-----~e-------nl~~~~~~~~~~~~~  119 (252)
T PRK14272         62 VTG----RILLDG-QDIYGPRV---D--PVAMRRRVGMVFQKPNPFPTMSV-----FD-------NVVAGLKLAGIRDRD  119 (252)
T ss_pred             Cce----eEEECC-EEcccCcc---C--HHHhhceeEEEeccCccCcCCCH-----HH-------HHHHHHHhcCCCCHH
Confidence             79    888887 44321110   0  11233679999999775543222     00       0000000000  000


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~  373 (537)
                       ........+..+++..   ......+..|||||+||+    +++++++. +  |+++++|  |+|++...     ..++
T Consensus       120 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~  192 (252)
T PRK14272        120 HLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL----CIARALAV-E--PEILLMDEPTSALDPASTARIEDLMT  192 (252)
T ss_pred             HHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence             0000001111122110   112344789999999999    99999996 5  8999999  99983332     2233


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . +.+++++ +|+....... + ++++++|+++..+.+.++
T Consensus       193 ~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14272        193 DLK-K-VTTIIIV-THNMHQAARVSDTTSFFLVGDLVEHGPTDQL  234 (252)
T ss_pred             HHh-c-CCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            332 2 3566666 8888877653 3 899999999988777665

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.75  E-value=1.9e-19  Score=180.22  Aligned_cols=195  Identities=15%  Similarity=0.106  Sum_probs=123.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++..+                  -..+++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         4 ~l~~~~l~~~~~~~~v------------------l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl----~~p~~G--   59 (251)
T PRK09544          4 LVSLENVSVSFGQRRV------------------LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL----VAPDEG--   59 (251)
T ss_pred             EEEEeceEEEECCceE------------------EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce--
Confidence            4667888887653221                  2234577889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.+++.                   ..+++++|++.++......+              .+.+....... ..+...
T Consensus        60 --~i~~~~~-------------------~~i~~v~q~~~~~~~l~~~~--------------~~~~~~~~~~~-~~~~~~  103 (251)
T PRK09544         60 --VIKRNGK-------------------LRIGYVPQKLYLDTTLPLTV--------------NRFLRLRPGTK-KEDILP  103 (251)
T ss_pred             --EEEECCc-------------------cCEEEeccccccccccChhH--------------HHHHhcccccc-HHHHHH
Confidence              7776540                   24777787765433211100              00000000000 011112


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+..|||||+||+    +++++++. +  |+++++|  |+|++...  .++   ..+.+..+.+++
T Consensus       104 ~l~~~gl~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tii  175 (251)
T PRK09544        104 ALKRVQAGHLI-DAPMQKLSGGETQRV----LLARALLN-R--PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL  175 (251)
T ss_pred             HHHHcCChHHH-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            23355655443 344889999999999    99999996 5  8999999  99994332  222   333333245666


Q ss_pred             EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++ +|+.......+  ++++++ +++..+...++
T Consensus       176 iv-sH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        176 MV-SHDLHLVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             EE-ecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            66 89988775433  777754 67766665554

>PTZ00243 ABC transporter; Provisional

Probab=99.75  E-value=2.4e-19  Score=217.91  Aligned_cols=200  Identities=13%  Similarity=0.055  Sum_probs=134.0

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -++++|.+++|++|||||++|||||||+++|.|.    +.|+.|    +|.++| +++.-++.   ..    +++.++++
T Consensus      1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl----~~p~~G----~I~IDG-~di~~i~l---~~----LR~~I~iV 1389 (1560)
T PTZ00243       1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM----VEVCGG----EIRVNG-REIGAYGL---RE----LRRQFSMI 1389 (1560)
T ss_pred             eecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEcccCCH---HH----HHhcceEE
Confidence            4567888999999999999999999999999999    999999    999997 77665544   33    34889999


Q ss_pred             ccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        266 SQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       266 ~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      +|++.+|.. ..+++-..-+.+.+   ++.+.++..+-.+....-..-+ ..+|..       -..|||||||++    +
T Consensus      1390 pQdp~LF~gTIreNIdp~~~~sde---eI~~Al~~a~l~~~I~~lp~Gldt~vge~-------G~nLSgGQrQrL----a 1455 (1560)
T PTZ00243       1390 PQDPVLFDGTVRQNVDPFLEASSA---EVWAALELVGLRERVASESEGIDSRVLEG-------GSNYSVGQRQLM----C 1455 (1560)
T ss_pred             CCCCccccccHHHHhCcccCCCHH---HHHHHHHHCCChHHHhhCcccccccccCC-------cCcCCHHHHHHH----H
Confidence            999998865 22322110001111   1111111110000000000000 022221       235999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +||+++. ++ +++++||  |++++...+  +.+.+.+. .+.++|++ +|.......++ +++|++|+++..|++.++.
T Consensus      1456 LARALL~-~~-~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~I-AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1456 MARALLK-KG-SGFILMDEATANIDPALDRQIQATVMSAFSAYTVITI-AHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             HHHHHhc-CC-CCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEE-eccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999997 33 7999999  999844332  22333332 34577777 89999888777 9999999999999999884


Q ss_pred             h
Q psy16304        418 N  418 (537)
Q Consensus       418 ~  418 (537)
                      .
T Consensus      1533 ~ 1533 (1560)
T PTZ00243       1533 M 1533 (1560)
T ss_pred             h
Confidence            3

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.75  E-value=6.2e-19  Score=166.51  Aligned_cols=147  Identities=21%  Similarity=0.259  Sum_probs=104.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| ..+..+.        ...+..+++++
T Consensus        17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~--------~~~~~~i~~~~   79 (173)
T cd03230          17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL----LKPDSG----EIKVLG-KDIKKEP--------EEVKRRIGYLP   79 (173)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEcccch--------HhhhccEEEEe
Confidence            345677889999999999999999999999999    899999    899887 4432111        11235688988


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |++.++...+.                .+      ++                         .||+||+||+    ++++
T Consensus        80 q~~~~~~~~tv----------------~~------~~-------------------------~LS~G~~qrv----~lar  108 (173)
T cd03230          80 EEPSLYENLTV----------------RE------NL-------------------------KLSGGMKQRL----ALAQ  108 (173)
T ss_pred             cCCccccCCcH----------------HH------Hh-------------------------hcCHHHHHHH----HHHH
Confidence            88663322111                00      00                         0999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC  406 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~  406 (537)
                      +++. +  |+++++|  |++++..     .+.++.+.++ +.+++++ +|+....... + ++++++|+
T Consensus       109 al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230         109 ALLH-D--PELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLS-SHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             HHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEeCCC
Confidence            9996 5  8999999  9999332     2233344333 3567777 8988877643 3 77777775

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.7e-19  Score=180.09  Aligned_cols=196  Identities=12%  Similarity=0.082  Sum_probs=121.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|..- ...|  +.|    ++.++| ..+..++.    . ...++..++++
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v   89 (250)
T PRK14245         21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND-LIPATRLEG----EIRIDG-RNIYDKGV----Q-VDELRKNVGMV   89 (250)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc-ccCCCCCce----EEEECC-Eecccccc----c-HHHHhhheEEE
Confidence            4567788999999999999999999999998500 0233  589    999987 54432211    0 12233679999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCceeee
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs  339 (537)
                      +|++.++.. +.     .+       ++...+.......   ........+..+|+..   ......+..|||||+||+ 
T Consensus        90 ~q~~~~~~~-tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv-  155 (250)
T PRK14245         90 FQRPNPFPK-SI-----FE-------NVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL-  155 (250)
T ss_pred             ecCCccCcc-cH-----HH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH-
Confidence            999775531 11     01       0000000000000   0011122233455432   112344789999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL  410 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~  410 (537)
                         +++++++. +  |+++++|  |+|++..     ...++.+ .+ +.+++++ +|+...... ++ ++++++|+++..
T Consensus       156 ---~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiv-tH~~~~~~~~~d~v~~l~~G~~~~~  226 (250)
T PRK14245        156 ---CIARAMAV-S--PSVLLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIV-THNMQQAARVSDKTAFFYMGEMVEY  226 (250)
T ss_pred             ---HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-eCCHHHHHhhCCEEEEEECCEEEEE
Confidence               99999996 5  8999999  9999333     2233333 22 3566666 888887754 33 889999999988


Q ss_pred             ecccchh
Q psy16304        411 ISAKNLS  417 (537)
Q Consensus       411 g~nkdl~  417 (537)
                      +..+++.
T Consensus       227 ~~~~~~~  233 (250)
T PRK14245        227 DDTKKIF  233 (250)
T ss_pred             CCHHHHh
Confidence            8777763

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.4e-19  Score=179.13  Aligned_cols=210  Identities=11%  Similarity=0.038  Sum_probs=130.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.     |
T Consensus         4 ~l~~~~l~~~~~~~~~------------------l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~~   61 (251)
T PRK14251          4 IISAKDVHLSYGNYEA------------------LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM----NDDIENIK   61 (251)
T ss_pred             eEEEEeeEEEECCeee------------------eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----cccccCCC
Confidence            4567788887654222                  2234577889999999999999999999999998    75     4


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| ..+..  .   ......++..+++++|++.++.. +.     .+       ++...........  
T Consensus        62 ~~G----~v~i~g-~~~~~--~---~~~~~~~~~~i~~~~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~  118 (251)
T PRK14251         62 ITG----EIKFEG-QNIYG--S---KMDLVELRKEVGMVFQQPTPFPF-SV-----YD-------NVAYGLKIAGVKDKE  118 (251)
T ss_pred             cce----EEEECC-EEccc--c---cchHHHhhccEEEEecCCccCCC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence            799    898887 43321  1   11112234678999999775531 11     11       0000000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                       ........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ...++
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~  191 (251)
T PRK14251        119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI----CIARALAV-R--PKVVLLDEPTSALDPISSSEIEETLM  191 (251)
T ss_pred             HHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH----HHHHHHhc-C--CCEEEecCCCccCCHHHHHHHHHHHH
Confidence             0001111222344421   112344789999999999    99999996 5  8999999  8998332     22333


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus       192 ~~~-~-~~tiiii-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        192 ELK-H-QYTFIMV-THNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHH-c-CCeEEEE-ECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            432 2 3567777 8998876543 3 889999999988777665

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.4e-19  Score=181.65  Aligned_cols=211  Identities=13%  Similarity=0.093  Sum_probs=130.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|     
T Consensus         4 ~l~i~~v~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl----~~~~~~~~   61 (258)
T PRK14241          4 RIDVKDLNIYYGSFHA------------------VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM----HEVIPGAR   61 (258)
T ss_pred             cEEEeeEEEEECCEee------------------eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCcccCCC
Confidence            4567778877654322                  2234577889999999999999999999999998    763     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      ++|    +|.++| .++...+.    . ...++..+++++|++.++...+.     .+       ++...........  
T Consensus        62 ~~G----~I~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~  119 (258)
T PRK14241         62 VEG----EVLLDG-EDLYGPGV----D-PVAVRRTIGMVFQRPNPFPTMSI-----RD-------NVVAGLKLNGVRNKK  119 (258)
T ss_pred             cce----EEEECC-Eecccccc----C-hHHHhcceEEEccccccCCCCcH-----HH-------HHHHHHHhcCCCCHH
Confidence            799    999887 44321000    0 11234679999998775543222     00       0100000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                       ........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++.
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~  192 (258)
T PRK14241        120 DLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL----CIARAIAV-E--PDVLLMDEPCSALDPISTLAIEDLIN  192 (258)
T ss_pred             HHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             0001112223444421   112344789999999999    99999996 5  8999999  9999433     22333


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhc------CCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMS------CNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~------~G~ii~~g~nkdl  416 (537)
                      .+. . +.+++++ +|+....... + +++++      +|+++..+.++++
T Consensus       193 ~~~-~-~~tviiv-sH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~  240 (258)
T PRK14241        193 ELK-Q-DYTIVIV-THNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI  240 (258)
T ss_pred             HHh-c-CCEEEEE-ecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence            432 2 3566666 8998877543 3 66675      7999888777665

>KOG0927|consensus

Probab=99.75  E-value=1.1e-19  Score=191.48  Aligned_cols=272  Identities=13%  Similarity=0.169  Sum_probs=154.5

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHH-------
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW-------  258 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~-------  258 (537)
                      -....+.+.+|+++||+|+||+||||+|++|.|.    ..|..-    .+.+      ...+..-........       
T Consensus        91 ~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~----e~P~p~----~~d~------y~ls~e~~ps~~~av~~v~~~~  156 (614)
T KOG0927|consen   91 IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGR----EVPIPE----HIDF------YLLSREIEPSEKQAVQAVVMET  156 (614)
T ss_pred             eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcC----CCCCCc----ccch------hhhcccCCCchHHHHHHHhhhh
Confidence            3455677889999999999999999999999998    555433    2111      111110000000000       


Q ss_pred             ---HhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304        259 ---KQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP  334 (537)
Q Consensus       259 ---~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~  334 (537)
                         +..+.+...+..          ...| .+.+....+++.+..++.-....+....+..+|.....-.+.+..|||||
T Consensus       157 ~~e~~rle~~~E~l~----------~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw  226 (614)
T KOG0927|consen  157 DHERKRLEYLAEDLA----------QACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW  226 (614)
T ss_pred             HHHHHHHHHHHHHHH----------hhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence               001111000000          0000 01111222233233332222233344445567766666677789999999


Q ss_pred             ceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCE-EEEEEeCCCcchhhhhh--hhhhcCCcEE
Q psy16304        335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQ-TLLVSHSLSGRPDDRCQ--VYLMSCNCQV  408 (537)
Q Consensus       335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~-vIlVvdshd~~~~~~~~--i~ll~~G~ii  408 (537)
                      ++|+    ++|++++. +  |++++||  |+|++.....| +.|+.+.+. +++++ +|+.+++..+|  ++-++.++.+
T Consensus       227 rmR~----aLAr~Lf~-k--P~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~-sh~QDfln~vCT~Ii~l~~kkl~  298 (614)
T KOG0927|consen  227 RMRA----ALARALFQ-K--PDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIV-SHSQDFLNGVCTNIIHLDNKKLI  298 (614)
T ss_pred             HHHH----HHHHHHhc-C--CCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEE-ecchhhhhhHhhhhheeccccee
Confidence            9999    99999997 5  8999999  99998888888 899988877 45555 99999999888  6667788999


Q ss_pred             EEecccchhhhhccchhhhhhhhhhHHhh----ccccccccCCCCCccccccchhhhhccccCcC---------CCCCce
Q psy16304        409 YLISAKNLSNGFKKSERDETNISNFQIKN----SSENLQDNNTSDNHDSKKKQPRKRKKKVAPLN---------TDDETE  475 (537)
Q Consensus       409 ~~g~nkdl~~~~~~~~~~~~~le~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~r~k~~~~l~---------~~~~~~  475 (537)
                      .+++|+|.--.- ..+.++.+...+.-..    ..+.+....... .+...+++++.+|..+++.         .+....
T Consensus       299 ~y~Gnydqy~~t-r~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g-~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~  376 (614)
T KOG0927|consen  299 YYEGNYDQYVKT-RSELEENQMKAYEKQQKQIAHMKDLIARFGHG-SAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLS  376 (614)
T ss_pred             eecCCHHHHhhH-HHHHhHHHHHHHHHHHhHHHHhhHHHHhhccc-chhhhHHHhhhhhhHHHHhhccccccccCCceEE
Confidence            999999741100 0111111111110000    001111111111 1222345556555444432         233447


Q ss_pred             eecCccccCCCceEEE
Q psy16304        476 LSLPPLRLLGRNVTHT  491 (537)
Q Consensus       476 l~fp~~~~~g~~v~~~  491 (537)
                      +.||....+|..|+.+
T Consensus       377 ~~f~~vg~~p~pvi~~  392 (614)
T KOG0927|consen  377 FRFPEVGKIPPPVIMV  392 (614)
T ss_pred             EEcccccCCCCCeEEE
Confidence            8999998888888776

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.9e-19  Score=179.66  Aligned_cols=192  Identities=15%  Similarity=0.126  Sum_probs=118.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..  |   +.|    +|.++| ..+...+.   .  ...++..+
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i   86 (250)
T PRK14240         21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRM----NDLIPSVKIEG----EVLLDG-QDIYKSDI---D--VNQLRKRV   86 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCCCCce----EEEECC-EEcccccc---c--hHHHhccE
Confidence            45677889999999999999999999999997    54  2   689    999987 44421110   0  11233678


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCce
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPII  336 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rq  336 (537)
                      ++++|++.++. .+.     .+       ++...........   ........+..+|+..   ......+.+|||||+|
T Consensus        87 ~~~~q~~~~~~-~t~-----~~-------ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  153 (250)
T PRK14240         87 GMVFQQPNPFP-MSI-----YD-------NVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ  153 (250)
T ss_pred             EEEecCCccCc-ccH-----HH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence            99999976543 211     11       0000000000000   0000111111223211   1123447889999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ  407 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i  407 (537)
                      |+    +++++++. +  |+++++|  |+|++....     .+..+ .. +.+++++ +|+....... + ++++++|++
T Consensus       154 rv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~-sH~~~~~~~~~d~v~~l~~G~i  223 (250)
T PRK14240        154 RL----CIARALAV-E--PEVLLMDEPTSALDPISTLKIEELIQEL-KK-DYTIVIV-THNMQQASRISDKTAFFLNGEI  223 (250)
T ss_pred             HH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-EeCHHHHHhhCCEEEEEECCEE
Confidence            99    99999997 5  8999999  999943322     22333 22 3566666 8888876553 3 889999999


Q ss_pred             EEEecccch
Q psy16304        408 VYLISAKNL  416 (537)
Q Consensus       408 i~~g~nkdl  416 (537)
                      +..+..+++
T Consensus       224 ~~~~~~~~~  232 (250)
T PRK14240        224 VEFGDTVDL  232 (250)
T ss_pred             EEeCCHHHH
Confidence            988776665

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.75  E-value=3.9e-19  Score=181.83  Aligned_cols=200  Identities=16%  Similarity=0.117  Sum_probs=146.9

Q ss_pred             ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      +.+++.++++..+|+.+||||.+|||||||-..|.+.    ..++ |    .|.+.| .++...+......    .++.+
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL----~~s~-G----~I~F~G-~~i~~~~~~~mrp----lR~~m  365 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL----IPSQ-G----EIRFDG-QDIDGLSRKEMRP----LRRRM  365 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh----cCcC-c----eEEECC-ccccccChhhhhh----hhhhc
Confidence            4577889999999999999999999999999999998    5555 9    888887 5555444432223    34789


Q ss_pred             hccccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cC---CccccCCccEEEeccCccCccchhhhhcCCCce
Q psy16304        263 GTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HL---PLVDFRSVPILVLGLDNAGKSSIIKRILGEPII  336 (537)
Q Consensus       263 ~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l---~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rq  336 (537)
                      ..|||+|+  +.+.++.+-+            +.+-+...+ .+   +...+....+.-+|++......++++|||||+|
T Consensus       366 QvVFQDPygSLsPRmtV~qI------------I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ  433 (534)
T COG4172         366 QVVFQDPYGSLSPRMTVGQI------------IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ  433 (534)
T ss_pred             eEEEeCCCCCCCcccCHHHH------------hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence            99999987  3333333111            122221111 11   111122334557899888889999999999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ  407 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i  407 (537)
                      |+    ++|++++. +  |.+++||  |+.++     ....+++.+-++.+...+++ +||..-....+  +++|++|++
T Consensus       434 RI----AIARAliL-k--P~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI-SHDL~VvrAl~~~viVm~~Gki  505 (534)
T COG4172         434 RI----AIARALIL-K--PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI-SHDLAVVRALCHRVIVMRDGKI  505 (534)
T ss_pred             HH----HHHHHHhc-C--CcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHHhhceEEEEeCCEE
Confidence            99    99999997 5  8999999  88883     33445566666767777777 99999888766  999999999


Q ss_pred             EEEecccch
Q psy16304        408 VYLISAKNL  416 (537)
Q Consensus       408 i~~g~nkdl  416 (537)
                      +..|...++
T Consensus       506 VE~G~~~~i  514 (534)
T COG4172         506 VEQGPTEAV  514 (534)
T ss_pred             eeeCCHHHH
Confidence            999988876

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.75  E-value=1.8e-19  Score=179.49  Aligned_cols=198  Identities=13%  Similarity=0.067  Sum_probs=119.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    .  .|+.|    ++.++| ..+..++     . ....+..++++
T Consensus        19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~G----~i~~~g-~~~~~~~-----~-~~~~~~~i~~~   83 (248)
T PRK09580         19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR----EDYEVTGG----TVEFKG-KDLLELS-----P-EDRAGEGIFMA   83 (248)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHcCC----ccCCCCce----EEEECC-CccccCC-----H-HHHhhcceEEE
Confidence            45677889999999999999999999999998    6  48999    888887 3332111     1 11122458889


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcc--cccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeeccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPD--ELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~--~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti  342 (537)
                      +|++.+++..+....  ....   ...+..  ....+............+..+|++....+..+. .|||||+||+    
T Consensus        84 ~q~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv----  154 (248)
T PRK09580         84 FQYPVEIPGVSNQFF--LQTA---LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN----  154 (248)
T ss_pred             ecCchhccchhHHHH--HHHh---hhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH----
Confidence            998765443221000  0000   000000  000000000011112233345554222233343 7999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHHH--HHH---HHHhcCCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEec
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWK---QYLGTVSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLIS  412 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~---~~~~~~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g~  412 (537)
                      +++++++. +  |+++++|  |+|++....  +.+   .+. ..+.+++++ +|+.......  + ++++++|+++..++
T Consensus       155 ~laral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~-sH~~~~~~~~~~d~i~~l~~g~i~~~g~  229 (248)
T PRK09580        155 DILQMAVL-E--PELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIV-THYQRILDYIKPDYVHVLYQGRIVKSGD  229 (248)
T ss_pred             HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEE-eCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence            99999997 5  8999999  999943322  222   332 334566666 8888877653  4 78889999887765


Q ss_pred             cc
Q psy16304        413 AK  414 (537)
Q Consensus       413 nk  414 (537)
                      .+
T Consensus       230 ~~  231 (248)
T PRK09580        230 FT  231 (248)
T ss_pred             HH
Confidence            44

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.75  E-value=1.8e-19  Score=178.72  Aligned_cols=193  Identities=15%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| ..+..++     .    .+..+++++
T Consensus        17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~i~g-~~~~~~~-----~----~~~~i~~~~   78 (237)
T TIGR00968        17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL----EQPDSG----RIRLNG-QDATRVH-----A----RDRKIGFVF   78 (237)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcCcCC-----h----hhcCEEEEe
Confidence            345677889999999999999999999999999    999999    888887 4432111     1    135689999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |++.++...+..-.+.+.         .. ................+..+|+.... .+.+..||+||+|++    ++++
T Consensus        79 q~~~~~~~~t~~enl~~~---------~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl----~lar  143 (237)
T TIGR00968        79 QHYALFKHLTVRDNIAFG---------LE-IRKHPKAKIKARVEELLELVQLEGLG-DRYPNQLSGGQRQRV----ALAR  143 (237)
T ss_pred             cChhhccCCcHHHHHHhH---------HH-hcCCCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHH----HHHH
Confidence            987755432220000000         00 00000000000112223345555433 344789999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++. +  |+++++|  |+|++..  ..+   +..+.++.+.+++++ +|+......+ + ++++++|+++..+...++
T Consensus       144 al~~-~--p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  218 (237)
T TIGR00968       144 ALAV-E--PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV-THDQEEAMEVADRIVVMSNGKIEQIGSPDEV  218 (237)
T ss_pred             HHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence            9996 5  8999999  9999322  223   333333324566666 8888876553 3 889999999887776655

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=3.3e-19  Score=178.00  Aligned_cols=212  Identities=14%  Similarity=0.111  Sum_probs=129.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|++...                  -.++++.+.+|++++|+|+||+|||||+++|+|.    ..     |
T Consensus         3 ~l~~~~l~~~~~~~~~------------------l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~~~~~~~   60 (250)
T PRK14262          3 IIEIENFSAYYGEKKA------------------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM----NDHIPGFR   60 (250)
T ss_pred             eEEEEeeEEEeCCcee------------------EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc----ccCCCCCC
Confidence            4567777776653221                  2345677889999999999999999999999998    66     3


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      ++|    ++.++| ..+...+     .....++..+++++|++.++. .+.     .+       ++...........  
T Consensus        61 ~~G----~i~i~g-~~~~~~~-----~~~~~~~~~i~~~~q~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~  117 (250)
T PRK14262         61 VEG----KIYFKG-QDIYDPQ-----LDVTEYRKKVGMVFQKPTPFP-MSI-----YD-------NVAFGPRIHGVKSKH  117 (250)
T ss_pred             cce----EEEECC-EEcccch-----hhHHHhhhhEEEEecCCccCc-ccH-----HH-------HHHHHHHHcCCCcHH
Confidence            889    899887 4332111     011123467999999977543 221     01       0000000000000  


Q ss_pred             -ccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHH
Q psy16304        305 -LVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYL  376 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~  376 (537)
                       ........+..+|+...   .....+.+||+||+||+    +++++++. +  |+++++|  |+|++...  .+++.+.
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~----~la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~  190 (250)
T PRK14262        118 KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL----CIARALAV-E--PEVILLDEPTSALDPIATQRIEKLLE  190 (250)
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH----HHHHHHhC-C--CCEEEEeCCccccCHHHHHHHHHHHH
Confidence             00001111223343211   12344789999999999    99999996 5  8999999  99994332  2223222


Q ss_pred             hc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        377 GT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +. .+.+++++ +|+.+..... + ++++++|+++..+...++
T Consensus       191 ~~~~~~tili~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        191 ELSENYTIVIV-THNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHhcCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            11 13566666 8888866543 3 889999999988876665

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.74  E-value=2.2e-19  Score=198.00  Aligned_cols=244  Identities=13%  Similarity=0.069  Sum_probs=150.5

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA  172 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~  172 (537)
                      ..-+.|+..+...+..++....+++++.++++.+.... +..+...         .....+.+++++..|++..   .  
T Consensus       271 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~~~~~~~---------~~~~~i~~~~v~f~y~~~~---~--  335 (529)
T TIGR02857       271 PEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-GKAPVTA---------APAPSLEFSGLSVAYPGRR---A--  335 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcCCCC---------CCCCeEEEEEEEEECCCCC---c--
Confidence            34568999999999999999999999988887332111 1100000         0011356777777765321   0  


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                                 ..-.++++.+++|++++|+|+||+|||||+++|+|.    ++|+.|    +|.++| .++..++.    
T Consensus       336 -----------~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~I~~~g-~~i~~~~~----  391 (529)
T TIGR02857       336 -----------PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF----VDPTEG----SIAVNG-VPLADADA----  391 (529)
T ss_pred             -----------ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EehhhCCH----
Confidence                       012346688889999999999999999999999999    999999    999987 55544433    


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchh
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSII  327 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li  327 (537)
                         ..+++.+++++|++.++.. ..+++.+... .+.++.....+..   +++..++...+     ..+|..       .
T Consensus       392 ---~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gld-----t~v~e~-------g  456 (529)
T TIGR02857       392 ---DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLD-----TLIGEG-------G  456 (529)
T ss_pred             ---HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-----chhccc-------c
Confidence               2334789999999998765 3333322111 1111110000000   01111110000     012211       3


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~  398 (537)
                      ..|||||+||+    ++||+++. +  |+++++|  |++++..  ..+.+.+.+. .+.+++++ +|+......++
T Consensus       457 ~~LSgGq~qri----~laRal~~-~--~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i-tH~~~~~~~~d  524 (529)
T TIGR02857       457 AGLSGGQAQRL----ALARAFLR-D--APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLV-THRLALAERAD  524 (529)
T ss_pred             ccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHhCC
Confidence            45999999999    99999996 5  8999999  9999433  3333444332 34566677 78876655443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.74  E-value=2.2e-19  Score=181.91  Aligned_cols=187  Identities=16%  Similarity=0.108  Sum_probs=122.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    +. +.|    +|.++| .++...+   ..    .++..+++++
T Consensus        21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl----~~-~~G----~I~i~g-~~i~~~~---~~----~lr~~i~~v~   83 (275)
T cd03289          21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL----LN-TEG----DIQIDG-VSWNSVP---LQ----KWRKAFGVIP   83 (275)
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh----cC-CCc----EEEECC-EEhhhCC---HH----HHhhhEEEEC
Confidence            445678889999999999999999999999999    65 789    999887 4442211   11    2346799999


Q ss_pred             cCCCCCCCc-cceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchh-----------hhhcCCC
Q psy16304        267 QTPLGRPDS-RTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSII-----------KRILGEP  334 (537)
Q Consensus       267 Q~~~l~~~~-~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li-----------~~LSgG~  334 (537)
                      |++.+++.. .+.+    +              ....+.. .+....+..+|+.... ..++           ..||+||
T Consensus        84 q~~~lf~~tv~~nl----~--------------~~~~~~~-~~~~~~l~~~gL~~~~-~~~p~~l~~~~~~~g~~LS~G~  143 (275)
T cd03289          84 QKVFIFSGTFRKNL----D--------------PYGKWSD-EEIWKVAEEVGLKSVI-EQFPGQLDFVLVDGGCVLSHGH  143 (275)
T ss_pred             CCcccchhhHHHHh----h--------------hccCCCH-HHHHHHHHHcCCHHHH-HhCcccccceecCCCCCCCHHH
Confidence            998876531 1111    0              0000000 0000111123333221 1122           2499999


Q ss_pred             ceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEE
Q psy16304        335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQV  408 (537)
Q Consensus       335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii  408 (537)
                      +|++    +++++++. +  |+++++|  |++++..  ..+.+.+.+. .+.+++++ +|+......++ +++|++|+++
T Consensus       144 ~qrl----~LaRall~-~--p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i-sH~~~~i~~~dri~vl~~G~i~  215 (275)
T cd03289         144 KQLM----CLARSVLS-K--AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS-EHRIEAMLECQRFLVIEENKVR  215 (275)
T ss_pred             HHHH----HHHHHHhc-C--CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE-ECCHHHHHhCCEEEEecCCeEe
Confidence            9999    99999997 5  8999999  9999433  2222333222 23566666 78887766555 8999999999


Q ss_pred             EEecccchhh
Q psy16304        409 YLISAKNLSN  418 (537)
Q Consensus       409 ~~g~nkdl~~  418 (537)
                      ..+++.++..
T Consensus       216 ~~g~~~~l~~  225 (275)
T cd03289         216 QYDSIQKLLN  225 (275)
T ss_pred             ecCCHHHHhh
Confidence            9999988754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.74  E-value=2.5e-19  Score=201.55  Aligned_cols=182  Identities=15%  Similarity=0.158  Sum_probs=118.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|+++||+|+||||||||+++|+|.    ..|+.|    +|.++....                   +++++
T Consensus       336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G----~i~~~~~~~-------------------i~y~~  388 (635)
T PRK11147        336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ----LQADSG----RIHCGTKLE-------------------VAYFD  388 (635)
T ss_pred             cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECCCcE-------------------EEEEe
Confidence            345677889999999999999999999999999    999999    777743222                   45555


Q ss_pred             cCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |+.. +++..+.     .+       ++...................+..+|+........+..|||||++|+    +++
T Consensus       389 q~~~~l~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl----~la  452 (635)
T PRK11147        389 QHRAELDPEKTV-----MD-------NLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRL----LLA  452 (635)
T ss_pred             CcccccCCCCCH-----HH-------HHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHH----HHH
Confidence            5432 2221111     00       00000000000000001112233455543223455899999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhHH-HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc-CCcEEEEecccc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDFR-TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS-CNCQVYLISAKN  415 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~~-~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~-~G~ii~~g~nkd  415 (537)
                      ++++. +  |++++||  |+|++... ..+..+++...++|+++ +||+.+...++  +++++ +|++..+.++++
T Consensus       453 ~al~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-SHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~  524 (635)
T PRK11147        453 RLFLK-P--SNLLILDEPTNDLDVETLELLEELLDSYQGTVLLV-SHDRQFVDNTVTECWIFEGNGKIGRYVGGYH  524 (635)
T ss_pred             HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence            99996 5  8999999  99994433 33355566556778888 89999887655  88887 799988877774

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.74  E-value=1.1e-18  Score=159.67  Aligned_cols=184  Identities=16%  Similarity=0.149  Sum_probs=129.5

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +..+.||.+.+|++++|.||+|||||||+++++.+    .+||+|    ++.+.| .+++-.+   -+.+|    ..++|
T Consensus        18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L----isp~~G----~l~f~G-e~vs~~~---pea~R----q~VsY   81 (223)
T COG4619          18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL----ISPTSG----TLLFEG-EDVSTLK---PEAYR----QQVSY   81 (223)
T ss_pred             eecceeeeecCCceEEEeCCCCccHHHHHHHHHhc----cCCCCc----eEEEcC-ccccccC---hHHHH----HHHHH
Confidence            34566788999999999999999999999999999    999999    999987 5554433   35666    88999


Q ss_pred             cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      +.|.+.+|.+ ..+++++=+-              ....-.........+..++++..--++.+..||||++||+    +
T Consensus        82 ~~Q~paLfg~tVeDNlifP~~--------------~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri----A  143 (223)
T COG4619          82 CAQTPALFGDTVEDNLIFPWQ--------------IRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI----A  143 (223)
T ss_pred             HHcCccccccchhhccccchH--------------HhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH----H
Confidence            9999998866 3333322111              0000000011122344566666666777899999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcch-hhhhh-hhhhcCCc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRP-DDRCQ-VYLMSCNC  406 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~-~~~~~-i~ll~~G~  406 (537)
                      +.+.+.. -  |++++||  |+.+     +.+..++-.|.+..+.+++-+ +||.+. ....+ +|-+..|.
T Consensus       144 liR~Lq~-~--P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~Wi-THd~dqa~rha~k~itl~~G~  211 (223)
T COG4619         144 LIRNLQF-M--PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWI-THDKDQAIRHADKVITLQPGH  211 (223)
T ss_pred             HHHHhhc-C--CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEE-ecChHHHhhhhheEEEeccCc
Confidence            9888876 4  7999999  8888     445556677777777888888 888765 33333 55554444

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=4e-19  Score=199.79  Aligned_cols=178  Identities=20%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|+++||+||||||||||+++|+|.    ..|++|    +|.++++..                   ++|++|
T Consensus       330 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G----~i~~~~~~~-------------------igy~~Q  382 (638)
T PRK10636        330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE----LAPVSG----EIGLAKGIK-------------------LGYFAQ  382 (638)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEECCCEE-------------------EEEecC
Confidence            45677889999999999999999999999999    899999    887764333                   444444


Q ss_pred             CCC--CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ...  +....+.                .+.+...............+..+|+........+..|||||++|+    +++
T Consensus       383 ~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl----~La  442 (638)
T PRK10636        383 HQLEFLRADESP----------------LQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARL----VLA  442 (638)
T ss_pred             cchhhCCccchH----------------HHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHH----HHH
Confidence            321  0000000                000000000000011223344566643223455899999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE-ecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL-ISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~-g~nkdl  416 (537)
                      ++++. +  |++++||  |+|++.... .+..++....++||++ +||+.+...++  ++++++|+++.. |+..++
T Consensus       443 ~~l~~-~--p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~v-SHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        443 LIVWQ-R--PNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV-SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            99996 5  8999999  999954433 3345555555677777 89999887655  888999998744 443344

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.74  E-value=1.1e-18  Score=163.33  Aligned_cols=137  Identities=17%  Similarity=0.126  Sum_probs=95.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| .++...+      .....+..+++++
T Consensus        17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~v~~~g-~~~~~~~------~~~~~~~~i~~~~   81 (163)
T cd03216          17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL----YKPDSG----EILVDG-KEVSFAS------PRDARRAGIAMVY   81 (163)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EECCcCC------HHHHHhcCeEEEE
Confidence            345677889999999999999999999999999    999999    888876 3321110      0000011122211


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                                                                                    +||+||+||+    ++++
T Consensus        82 --------------------------------------------------------------qLS~G~~qrl----~lar   95 (163)
T cd03216          82 --------------------------------------------------------------QLSVGERQMV----EIAR   95 (163)
T ss_pred             --------------------------------------------------------------ecCHHHHHHH----HHHH
Confidence                                                                          1999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                      +++. +  |+++++|  |+|++..  ..++   +++.++ +.+++++ +|+....... + ++++++|+++.
T Consensus        96 al~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216          96 ALAR-N--ARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFI-SHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHhc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence            9997 5  8999999  8999322  2222   333322 4566666 8988876543 3 88889998753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=3.7e-19  Score=177.59  Aligned_cols=210  Identities=15%  Similarity=0.102  Sum_probs=128.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|     
T Consensus         3 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   60 (249)
T PRK14253          3 KFNIENLDLFYGENQA------------------LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM----NDLIEGVK   60 (249)
T ss_pred             eEEEeccEEEECCeee------------------eecceEEecCCCEEEEECCCCCCHHHHHHHHHhh----cccccCCC
Confidence            4567777777653222                  2345677889999999999999999999999998    665     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                      ++|    ++.++| .++..  .   ... ..++..+++++|++.++. .+.  .+.+...     .....      ....
T Consensus        61 ~~G----~v~~~g-~~~~~--~---~~~-~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~-----~~~~~------~~~~  117 (249)
T PRK14253         61 ITG----KLTMDG-EDIYG--N---IDV-ADLRIKVGMVFQKPNPFP-MSIYENVAYGLR-----AQGIK------DKKV  117 (249)
T ss_pred             Cce----EEEECC-EEccc--c---cch-HHHHhheeEEecCCCcCc-ccHHHHHHhHHH-----hcCCC------chHH
Confidence            589    888887 43321  0   011 123467999999987554 221  0000000     00000      0000


Q ss_pred             ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHH
Q psy16304        305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQ  374 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~  374 (537)
                      ........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++...     ..+..
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~  190 (249)
T PRK14253        118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL----CIARTIAM-E--PDVILMDEPTSALDPIATHKIEELMEE  190 (249)
T ss_pred             HHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            0000011111233221   112334778999999999    99999996 5  8999999  99993332     23333


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+  ..+++++ +|+....... + ++++++|++...+.++++
T Consensus       191 ~~~--~~tii~~-sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        191 LKK--NYTIVIV-THSMQQARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             Hhc--CCeEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            322  3566666 8888876653 3 899999999987776655

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.74  E-value=3.2e-19  Score=190.40  Aligned_cols=214  Identities=14%  Similarity=0.073  Sum_probs=147.9

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.+++++|.||.-....+                  ++|.+.+|++.+|+|.||||||||+|+|+|.    +.|++|
T Consensus         6 ~~ll~~~~i~K~FggV~AL~~------------------v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv----~~p~~G   63 (500)
T COG1129           6 PPLLELRGISKSFGGVKALDG------------------VSLTVRPGEVHALLGENGAGKSTLMKILSGV----YPPDSG   63 (500)
T ss_pred             cceeeeecceEEcCCceeecc------------------ceeEEeCceEEEEecCCCCCHHHHHHHHhCc----ccCCCc
Confidence            346778999999887665554                  4577889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                          +|.++| ..+...+.      +......+..|+|+..+.++++.+--+...      ......+..++.-....++
T Consensus        64 ----~I~~~G-~~~~~~sp------~~A~~~GI~~V~QEl~L~p~LsVaeNifLg------re~~~~~g~id~~~m~~~A  126 (500)
T COG1129          64 ----EILIDG-KPVAFSSP------RDALAAGIATVHQELSLVPNLSVAENIFLG------REPTRRFGLIDRKAMRRRA  126 (500)
T ss_pred             ----eEEECC-EEccCCCH------HHHHhCCcEEEeechhccCCccHHHHhhcc------cccccCCCccCHHHHHHHH
Confidence                999997 55554332      334457899999999988876652111111      0000001111111112233


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+... -+..+.+||.|++|.|    ++|+++.. +  +++++||  |+.+     +....+.+.+.+++ ..
T Consensus       127 ~~~l~~lg~~~~-~~~~v~~LsiaqrQ~V----eIArAl~~-~--arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G-v~  197 (500)
T COG1129         127 RELLARLGLDID-PDTLVGDLSIAQRQMV----EIARALSF-D--ARVLILDEPTAALTVKETERLFDLIRRLKAQG-VA  197 (500)
T ss_pred             HHHHHHcCCCCC-hhhhhhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC-CE
Confidence            444555666433 4666999999999999    99999997 5  7999999  8888     22233335554444 34


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      ++.+ ||.+++...++  +.+|.+|+.+....
T Consensus       198 ii~I-SHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         198 IIYI-SHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             EEEE-cCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            4444 67877776655  99999999888766

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.74  E-value=8.2e-19  Score=192.31  Aligned_cols=204  Identities=14%  Similarity=0.050  Sum_probs=129.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +..++++.+.+|++++|+||||||||||+++|+|.    ..|++|    +|.++| .++...     . .....+..+++
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~----~~p~~G----~i~~~g-~~~~~~-----~-~~~~~~~~i~~  332 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA----TRRTAG----QVYLDG-KPIDIR-----S-PRDAIRAGIML  332 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC----CcCCCc----eEEECC-EECCCC-----C-HHHHHhCCCEE
Confidence            34677889999999999999999999999999999    899999    888876 333111     1 11223457899


Q ss_pred             cccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++|++.   ++...+..-.+.+.. ....  ....+ +.............+..+|+........+.+|||||+||+   
T Consensus       333 ~~q~~~~~~~~~~~tv~e~l~~~~-~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl---  405 (501)
T PRK11288        333 CPEDRKAEGIIPVHSVADNINISA-RRHH--LRAGC-LINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA---  405 (501)
T ss_pred             cCcCHhhCCCcCCCCHHHHhcccc-chhh--ccccc-ccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH---
Confidence            999863   333222100000000 0000  00000 0000000011223444677742223555899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhh--H---HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSED--F---RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~--~---~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       .++++++. +  |++++||  |+|++.  .   ...+..+.+ .+.+++++ +||+.+....+  ++++++|+++..+.
T Consensus       406 -~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiv-sHd~~~~~~~~d~i~~l~~g~i~~~~~  479 (501)
T PRK11288        406 -ILGRWLSE-D--MKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFV-SSDLPEVLGVADRIVVMREGRIAGELA  479 (501)
T ss_pred             -HHHHHHcc-C--CCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence             99999996 5  8999999  999932  2   223334433 35577777 99999887654  88999999998887


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      .++.
T Consensus       480 ~~~~  483 (501)
T PRK11288        480 REQA  483 (501)
T ss_pred             cccC
Confidence            6644

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.74  E-value=1.2e-18  Score=190.92  Aligned_cols=197  Identities=13%  Similarity=0.035  Sum_probs=125.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      -.+++|.+.+|++++|+|+||||||||+++|+|.    ..| ++|    +|.++| .++.     .... ....+..+++
T Consensus       276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~~G----~i~~~g-~~~~-----~~~~-~~~~~~~i~~  340 (500)
T TIGR02633       276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA----YPGKFEG----NVFING-KPVD-----IRNP-AQAIRAGIAM  340 (500)
T ss_pred             cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC----CCCCCCe----EEEECC-EECC-----CCCH-HHHHhCCCEE
Confidence            4467788999999999999999999999999999    885 899    888886 4331     1111 1123357899


Q ss_pred             cccCC---CCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        265 VSQTP---LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       265 v~Q~~---~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                      ++|++   .+++..+..-.+.+.        ....+.......   ........+..+|+........+.+|||||+||+
T Consensus       341 v~q~~~~~~l~~~~tv~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  412 (500)
T TIGR02633       341 VPEDRKRHGIVPILGVGKNITLS--------VLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA  412 (500)
T ss_pred             cCcchhhCCcCCCCCHHHHhcch--------hhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence            99995   344332210000000        000000000000   0011223344667753223455899999999999


Q ss_pred             ecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304        339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY  409 (537)
Q Consensus       339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~  409 (537)
                          +++++++. +  |++++||  |+|++...     .++..+.+. +.+++++ +||..+....+  ++++++|+++.
T Consensus       413 ----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiv-sHd~~~~~~~~d~v~~l~~G~i~~  483 (500)
T TIGR02633       413 ----VLAKMLLT-N--PRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVV-SSELAEVLGLSDRVLVIGEGKLKG  483 (500)
T ss_pred             ----HHHHHHhh-C--CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEE
Confidence                99999996 5  8999999  99993332     233444333 5677777 99998887644  88899999887


Q ss_pred             Eeccc
Q psy16304        410 LISAK  414 (537)
Q Consensus       410 ~g~nk  414 (537)
                      .....
T Consensus       484 ~~~~~  488 (500)
T TIGR02633       484 DFVNH  488 (500)
T ss_pred             EEccc
Confidence            66443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.74  E-value=6.3e-19  Score=170.26  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=108.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| ..+..        .....+..+++++|
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~v~~~g-~~~~~--------~~~~~~~~i~~~~q   81 (200)
T PRK13540         19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL----LNPEKG----EILFER-QSIKK--------DLCTYQKQLCFVGH   81 (200)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe----eEEECC-Ccccc--------CHHHHHhheEEecc
Confidence            45677889999999999999999999999999    999999    898887 33321        01223367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++..+..     +       ++..... ..  .........+..+|+.... ...+..||+||+||+    +++++
T Consensus        82 ~~~~~~~~tv~-----~-------~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv----~lara  141 (200)
T PRK13540         82 RSGINPYLTLR-----E-------NCLYDIH-FS--PGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQV----ALLRL  141 (200)
T ss_pred             ccccCcCCCHH-----H-------HHHHHHh-cC--cchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHH----HHHHH
Confidence            87654332220     0       0000000 00  0001112233344554332 344788999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                      ++. +  |+++++|  |+|++..     ...+..+.+ .+.+++++ +|+....+.++
T Consensus       142 l~~-~--p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~d  194 (200)
T PRK13540        142 WMS-K--AKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLT-SHQDLPLNKAD  194 (200)
T ss_pred             Hhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCchhccccc
Confidence            997 5  8999999  9998332     222233322 34566666 88888777654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=7.3e-19  Score=164.52  Aligned_cols=184  Identities=18%  Similarity=0.231  Sum_probs=122.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +...+++.+.+|+.++++||+|||||||+|+++|.    ..|..|    .+.+++ ..+   .-+|.         .-|.
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf----~~P~~G----~i~l~~-r~i---~gPga---------ergv   78 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF----VTPSRG----SIQLNG-RRI---EGPGA---------ERGV   78 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC----cCcccc----eEEECC-Eec---cCCCc---------ccee
Confidence            34556788999999999999999999999999999    999999    888887 443   22333         2488


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc---ccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV---DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~---~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |||+..+++.++.            .+++..-+.. .++...   ..+...+..+|+.+.. .+++-+|||||+||+   
T Consensus        79 VFQ~~~LlPWl~~------------~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRv---  141 (259)
T COG4525          79 VFQNEALLPWLNV------------IDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRV---  141 (259)
T ss_pred             EeccCccchhhHH------------HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHH---
Confidence            9999998776554            2222222211 112111   1223456688999888 556999999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH-----HHHH-HHHHhcCCEEEEEEeCCCcchhh--hhhhhhhc--CCcEEE
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIW-KQYLGTVSQTLLVSHSLSGRPDD--RCQVYLMS--CNCQVY  409 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~-~~~~~~~~~vIlVvdshd~~~~~--~~~i~ll~--~G~ii~  409 (537)
                       ++|+++.. +  |++++||  .+.++..     ..++ +.+...++.+++++  ||.+++.  ..+.+++.  .|+++.
T Consensus       142 -GiARALa~-e--P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT--H~ieEAlflatrLvvlsp~pgRvv~  215 (259)
T COG4525         142 -GIARALAV-E--PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT--HDIEEALFLATRLVVLSPGPGRVVE  215 (259)
T ss_pred             -HHHHHhhc-C--cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe--ccHHHHHhhhheeEEecCCCceeeE
Confidence             99999996 5  8999999  4444222     2222 22223455566665  5554443  34466665  456655


Q ss_pred             Eec
Q psy16304        410 LIS  412 (537)
Q Consensus       410 ~g~  412 (537)
                      .-.
T Consensus       216 ~~~  218 (259)
T COG4525         216 RLP  218 (259)
T ss_pred             ecC
Confidence            433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.74  E-value=8.1e-19  Score=192.38  Aligned_cols=203  Identities=14%  Similarity=0.053  Sum_probs=128.7

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -.+++|.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+...     . .....+..++++
T Consensus       268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~----~~p~~G----~I~~~g-~~i~~~-----~-~~~~~~~~i~~v  332 (501)
T PRK10762        268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA----LPRTSG----YVTLDG-HEVVTR-----S-PQDGLANGIVYI  332 (501)
T ss_pred             cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCCC-----C-HHHHHHCCCEEe
Confidence            4678889999999999999999999999999999    899999    998887 433211     1 111233569999


Q ss_pred             ccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +|++.   ++...+..-.+.+.    ..............-.........+..+|+........+.+|||||+||+    
T Consensus       333 ~q~~~~~~~~~~~tv~e~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv----  404 (501)
T PRK10762        333 SEDRKRDGLVLGMSVKENMSLT----ALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV----  404 (501)
T ss_pred             cCccccCCCcCCCcHHHHhhhh----hhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH----
Confidence            99862   33322210000000    00000000000000000111223445677742223556899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                      ++|++++. +  |++++||  |+|++..     ..++..+.++ +.+++++ +||.......+  ++++++|+++..+..
T Consensus       405 ~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviiv-tHd~~~~~~~~d~v~~l~~G~i~~~~~~  479 (501)
T PRK10762        405 AIARGLMT-R--PKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILV-SSEMPEVLGMSDRILVMHEGRISGEFTR  479 (501)
T ss_pred             HHHHHHhh-C--CCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEE-cCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence            99999996 5  8999999  9999322     2333444333 4566777 89988776544  889999999887776


Q ss_pred             cch
Q psy16304        414 KNL  416 (537)
Q Consensus       414 kdl  416 (537)
                      +++
T Consensus       480 ~~~  482 (501)
T PRK10762        480 EQA  482 (501)
T ss_pred             ccC
Confidence            554

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.74  E-value=3.3e-19  Score=176.56  Aligned_cols=190  Identities=16%  Similarity=0.128  Sum_probs=124.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| .++..+     ..    .+..+++++|
T Consensus        17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~----~~p~~G----~v~i~g-~~~~~~-----~~----~~~~i~~~~q   78 (235)
T cd03299          17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGF----IKPDSG----KILLNG-KDITNL-----PP----EKRDISYVPQ   78 (235)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcCcC-----Ch----hHcCEEEEee
Confidence            45677889999999999999999999999999    999999    898887 433211     11    1357899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+..            +++......  .............+..+|+.+.. ...+.+||+||+||+    +++
T Consensus        79 ~~~~~~~~t~~------------e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la  141 (235)
T cd03299          79 NYALFPHMTVY------------KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRV----AIA  141 (235)
T ss_pred             cCccCCCccHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-hcCcccCCHHHHHHH----HHH
Confidence            87655432220            000000000  00000001112233356665443 444889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  |+|++..  ..+|+   .+..+.+.+++++ +|+...... ++ ++++++|+++..++.+++
T Consensus       142 ral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  217 (235)
T cd03299         142 RALVV-N--PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-THDFEEAWALADKVAIMLNGKLIQVGKPEEV  217 (235)
T ss_pred             HHHHc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99997 5  8999999  9999332  22333   3333324566666 888887654 33 888899999887776555

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.6e-19  Score=181.69  Aligned_cols=210  Identities=16%  Similarity=0.107  Sum_probs=131.8

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----  226 (537)
                      .++.++++.+.|+...+                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|    
T Consensus        20 ~~l~i~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~p~~~~   77 (276)
T PRK14271         20 PAMAAVNLTLGFAGKTV------------------LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM----NDKVSGY   77 (276)
T ss_pred             cEEEEeeEEEEECCEEE------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCcCCCC
Confidence            35677888887764322                  2345677889999999999999999999999998    765    


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~  305 (537)
                       ++|    +|.++| ..+.-+.      ....++..+++++|++.+++ .+.     .+       ++............
T Consensus        78 ~~~G----~i~~~g-~~i~~~~------~~~~~~~~i~~v~q~~~l~~-~tv-----~e-------ni~~~~~~~~~~~~  133 (276)
T PRK14271         78 RYSG----DVLLGG-RSIFNYR------DVLEFRRRVGMLFQRPNPFP-MSI-----MD-------NVLAGVRAHKLVPR  133 (276)
T ss_pred             CCce----EEEECC-EEccccc------hhHHHhhheEEeccCCccCC-ccH-----HH-------HHHHHHHhccCCCH
Confidence             689    888887 4432110      01223467999999987554 221     00       00000000000000


Q ss_pred             ---cccCCccEEEeccCccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304        306 ---VDFRSVPILVLGLDNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW  372 (537)
Q Consensus       306 ---~~~~~~~L~llGl~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~  372 (537)
                         .......+..+|+....   ....+.+|||||+||+    +++++++. +  |+++++|  |+|++...     ..+
T Consensus       134 ~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl----~LAral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L  206 (276)
T PRK14271        134 KEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL----CLARTLAV-N--PEVLLLDEPTSALDPTTTEKIEEFI  206 (276)
T ss_pred             HHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHH
Confidence               00011112233443210   1233788999999999    99999996 5  8999999  99994332     223


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+.+  ..+++++ +|+....... + ++++++|+++..+...++
T Consensus       207 ~~~~~--~~tiiiv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  249 (276)
T PRK14271        207 RSLAD--RLTVIIV-THNLAQAARISDRAALFFDGRLVEEGPTEQL  249 (276)
T ss_pred             HHHhc--CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33322  3567777 8888876543 3 889999999888777666

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.74  E-value=4.1e-19  Score=173.44  Aligned_cols=187  Identities=13%  Similarity=0.159  Sum_probs=118.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+.++.+.|++...                  -.++++.+.+|++++|+|+||+|||||+++|+|.    +.|+.|  
T Consensus        11 ~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G--   66 (214)
T PRK13543         11 LLAAHALAFSRNEEPV------------------FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL----LHVESG--   66 (214)
T ss_pred             eEEEeeEEEecCCcee------------------eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCCe--
Confidence            4677888887654322                  2345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        ++.++| ..+..      ...    ...+++++|.+.++...+.     .+       ++.... .............
T Consensus        67 --~i~~~g-~~i~~------~~~----~~~i~~~~q~~~~~~~~t~-----~e-------~l~~~~-~~~~~~~~~~~~~  120 (214)
T PRK13543         67 --QIQIDG-KTATR------GDR----SRFMAYLGHLPGLKADLST-----LE-------NLHFLC-GLHGRRAKQMPGS  120 (214)
T ss_pred             --eEEECC-EEccc------hhh----hhceEEeecCcccccCCcH-----HH-------HHHHHH-HhcCCcHHHHHHH
Confidence              899887 44321      111    2468898888665433221     00       000000 0000000111122


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+..||+||+||+    +++++++. +  |+++++|  |++++...  .+   +..+.+. +.+++
T Consensus       121 ~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii  191 (214)
T PRK13543        121 ALAIVGLAGYE-DTLVRQLSAGQKKRL----ALARLWLS-P--APLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAAL  191 (214)
T ss_pred             HHHHcCChhhc-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence            23345665443 445889999999999    99999996 5  8999999  99993332  22   2333333 45666


Q ss_pred             EEeCCCcchhhhhh
Q psy16304        385 VSHSLSGRPDDRCQ  398 (537)
Q Consensus       385 Vvdshd~~~~~~~~  398 (537)
                      ++ +|+.......+
T Consensus       192 i~-sH~~~~~~~~~  204 (214)
T PRK13543        192 VT-THGAYAAPPVR  204 (214)
T ss_pred             EE-ecChhhhhhhc
Confidence            66 88888776554

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.74  E-value=4.3e-19  Score=175.73  Aligned_cols=194  Identities=18%  Similarity=0.127  Sum_probs=119.5

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+...+.       ..++..+++++|
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q   83 (237)
T cd03252          20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENG----RVLVDG-HDLALADP-------AWLRRQVGVVLQ   83 (237)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-eehHhcCH-------HHHhhcEEEEcC
Confidence            45677889999999999999999999999999    999999    898887 43321111       123367899999


Q ss_pred             CCCCCCC-ccceeeEEeecCcccccCCcccc-cccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304        268 TPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL-TSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       268 ~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++.++.. ..+.+.+ ..  .. .  ....+ .....    ......+..+  |+.... ...+.+|||||+||+    +
T Consensus        84 ~~~~~~~tv~~nl~~-~~--~~-~--~~~~~~~~~~~----~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~qrv----~  148 (237)
T cd03252          84 ENVLFNRSIRDNIAL-AD--PG-M--SMERVIEAAKL----AGAHDFISELPEGYDTIV-GEQGAGLSGGQRQRI----A  148 (237)
T ss_pred             CchhccchHHHHhhc-cC--CC-C--CHHHHHHHHHH----cCcHHHHHhCcccccchh-hcCCCcCCHHHHHHH----H
Confidence            9764421 0010000 00  00 0  00000 00000    0000111111  332221 234788999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++++. +  |+++++|  |+|++..  ..+++.+.+- .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus       149 laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~  223 (237)
T cd03252         149 IARALIH-N--PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIII-AHRLSTVKNADRIIVMEKGRIVEQGSHDEL  223 (237)
T ss_pred             HHHHHhh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999996 5  8999999  9999332  2222322221 13456666 88888776544 899999999888776555

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.74  E-value=1.5e-18  Score=164.63  Aligned_cols=152  Identities=18%  Similarity=0.263  Sum_probs=106.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+.        .....++..+++++|
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~--------~~~~~~~~~i~~~~q   82 (178)
T cd03247          20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD----LKPQQG----EITLDG-VPVS--------DLEKALSSLISVLNQ   82 (178)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----EEEECC-EEHH--------HHHHHHHhhEEEEcc
Confidence            45677889999999999999999999999999    999999    888887 3221        111223466888888


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++. .+                +.+      ++                       +..||+||+||+    +++++
T Consensus        83 ~~~~~~-~t----------------v~~------~i-----------------------~~~LS~G~~qrv----~lara  112 (178)
T cd03247          83 RPYLFD-TT----------------LRN------NL-----------------------GRRFSGGERQRL----ALARI  112 (178)
T ss_pred             CCeeec-cc----------------HHH------hh-----------------------cccCCHHHHHHH----HHHHH
Confidence            765221 00                010      00                       456999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEE
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYL  410 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~  410 (537)
                      ++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..
T Consensus       113 l~~-~--p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~~~~l~~g~i~~~  177 (178)
T cd03247         113 LLQ-D--APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI-THHLTGIEHMDKILFLENGKIIMQ  177 (178)
T ss_pred             Hhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEEEEECCEEEec
Confidence            996 5  8999999  8898332  2233322221 23556666 78877766544 888889987653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.74  E-value=1.9e-18  Score=163.12  Aligned_cols=146  Identities=18%  Similarity=0.204  Sum_probs=102.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| ..+...+.       ..++..+++++|
T Consensus        20 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q   83 (173)
T cd03246          20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGL----LRPTSG----RVRLDG-ADISQWDP-------NELGDHVGYLPQ   83 (173)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----eEEECC-EEcccCCH-------HHHHhheEEECC
Confidence            34577889999999999999999999999999    999999    898887 44322111       122356888888


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++. +                +.+      ++                          ||+||+||+    +++++
T Consensus        84 ~~~~~~~-t----------------v~~------~l--------------------------LS~G~~qrv----~la~a  110 (173)
T cd03246          84 DDELFSG-S----------------IAE------NI--------------------------LSGGQRQRL----GLARA  110 (173)
T ss_pred             CCccccC-c----------------HHH------HC--------------------------cCHHHHHHH----HHHHH
Confidence            7653211 0                011      00                          999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ  407 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i  407 (537)
                      ++. +  |+++++|  |+|++..     ...+..+.++ +.+++++ +|+......++ ++++++|++
T Consensus       111 l~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         111 LYG-N--PRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVI-AHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             Hhc-C--CCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHhCCEEEEEECCCC
Confidence            997 5  8999999  9999333     2233343332 3466666 78877665444 777877753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.74  E-value=2.6e-19  Score=198.50  Aligned_cols=209  Identities=15%  Similarity=0.127  Sum_probs=132.0

Q ss_pred             hhcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        151 ILMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       151 ~li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .++.++++++.|+ ...+.                  .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|
T Consensus         3 ~~i~~~nls~~~~~~~~il------------------~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~----~~p~~G   60 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEIL------------------KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV----DKEFNG   60 (552)
T ss_pred             EEEEEeeEEEecCCCCeee------------------cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc
Confidence            3567888888775 32222                  235677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeec-----------------Ccc--
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMC-----------------GVH--  288 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds-----------------~~~--  288 (537)
                          +|.+++.                   ..+++++|++.++...+.  .+.+....                 ...  
T Consensus        61 ----~i~~~~~-------------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (552)
T TIGR03719        61 ----EARPAPG-------------------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM  117 (552)
T ss_pred             ----eEEecCC-------------------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhh
Confidence                7766431                   236777777654433221  11000000                 000  


Q ss_pred             -----cccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--
Q psy16304        289 -----QVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--  361 (537)
Q Consensus       289 -----~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--  361 (537)
                           ....+.+.+...+.+....+....+..+|+..  ....+.+|||||++|+    +++++++. +  |++++||  
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkqrv----~la~al~~-~--p~lLLLDEP  188 (552)
T TIGR03719       118 DALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTKLSGGERRRV----ALCRLLLS-K--PDMLLLDEP  188 (552)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCC
Confidence                 00000011111111111111222344566643  2445899999999999    99999996 5  8999999  


Q ss_pred             cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        362 LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       362 T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      |++++.....| .++++...+++|++ +|+.......+  ++++++|+++...++.
T Consensus       189 t~~LD~~~~~~l~~~L~~~~~tvIii-sHd~~~~~~~~d~v~~l~~g~i~~~~g~~  243 (552)
T TIGR03719       189 TNHLDAESVAWLEQHLQEYPGTVVAV-THDRYFLDNVAGWILELDRGRGIPWEGNY  243 (552)
T ss_pred             CCCCChHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence            99996555544 55555545677777 89998887654  8889999987554444

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=4.3e-19  Score=179.36  Aligned_cols=209  Identities=14%  Similarity=0.106  Sum_probs=127.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.     |
T Consensus        13 ~l~i~nl~~~~~~~~i------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~p   70 (269)
T PRK14259         13 IISLQNVTISYGTFEA------------------VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM----NDLIEGCS   70 (269)
T ss_pred             eEEEEeEEEEECCEEE------------------EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCCC
Confidence            5677788777654222                  2345677889999999999999999999999998    65     6


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                      +.|    ++.++| .++...+.   .  ...++..+++++|++.++.. +.  .+.+...            ...... .
T Consensus        71 ~~G----~v~~~g-~~i~~~~~---~--~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~------------~~~~~~-~  126 (269)
T PRK14259         71 LKG----RVLFDG-TDLYDPRV---D--PVEVRRRIGMVFQQPNPFPK-SIYENIAFGAR------------INGYTG-D  126 (269)
T ss_pred             Cce----EEEECC-EEcccccC---C--HHHHhhceEEEccCCccchh-hHHHHHhhhhh------------hcCCcH-H
Confidence            899    888887 44321111   1  11233579999999875542 11  0000000            000000 0


Q ss_pred             ccccCCccEEEeccC----ccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHH
Q psy16304        305 LVDFRSVPILVLGLD----NAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYL  376 (537)
Q Consensus       305 ~~~~~~~~L~llGl~----~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~  376 (537)
                      ........+..+|+.    .. ....+.+||+||+||+    +++++++. +  |+++++|  |+|++...  .+++.+.
T Consensus       127 ~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~  198 (269)
T PRK14259        127 MDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRL----CIARTIAI-E--PEVILMDEPCSALDPISTLKIEETMH  198 (269)
T ss_pred             HHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            000011112223321    11 2334788999999999    99999996 5  8999999  99994332  2223222


Q ss_pred             --hcCCEEEEEEeCCCcchhhhhh--hhhhcC-----------CcEEEEecccch
Q psy16304        377 --GTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-----------NCQVYLISAKNL  416 (537)
Q Consensus       377 --~~~~~vIlVvdshd~~~~~~~~--i~ll~~-----------G~ii~~g~nkdl  416 (537)
                        +. +.+++++ +|+.......+  ++++++           |+++..+.++++
T Consensus       199 ~~~~-~~tiiiv-tH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~  251 (269)
T PRK14259        199 ELKK-NFTIVIV-THNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI  251 (269)
T ss_pred             HHhc-CCEEEEE-eCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence              22 3566666 88888776544  777875           557777776665

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.74  E-value=6.3e-19  Score=174.06  Aligned_cols=186  Identities=16%  Similarity=0.132  Sum_probs=136.8

Q ss_pred             hhcccccCCCcccCCCC-CCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        151 ILMGIQNVPNFQTSSVL-SDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .++.++++.+.|..... ....          .+.+.+.+||.+.+|+++||||.+|+|||||-++|.|+    +.||+|
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~----------~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L----~~pt~G   68 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKR----------YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL----EEPTSG   68 (268)
T ss_pred             ceEEEeccEEEEecccccCccc----------ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC----cCCCCc
Confidence            46788899998865432 2111          15678889999999999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                          +|.+.| .++...+.   ....    +.                               +.+              
T Consensus        69 ----~i~f~g-~~i~~~~~---~~~~----~~-------------------------------v~e--------------   91 (268)
T COG4608          69 ----EILFEG-KDITKLSK---EERR----ER-------------------------------VLE--------------   91 (268)
T ss_pred             ----eEEEcC-cchhhcch---hHHH----HH-------------------------------HHH--------------
Confidence                999887 33211110   0000    00                               111              


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v  382 (537)
                        .+..+|+...-..+++++|||||+||+    ++|++++. +  |++++.|  ++.+     .....++.++.++.+.+
T Consensus        92 --lL~~Vgl~~~~~~ryPhelSGGQrQRi----~IARALal-~--P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt  162 (268)
T COG4608          92 --LLEKVGLPEEFLYRYPHELSGGQRQRI----GIARALAL-N--PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT  162 (268)
T ss_pred             --HHHHhCCCHHHhhcCCcccCchhhhhH----HHHHHHhh-C--CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCe
Confidence              122445555455677999999999999    99999997 5  8999999  7776     34444556666666677


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.+ +||.......+  +.+|..|+++..+..+++.
T Consensus       163 ~lFI-sHDL~vv~~isdri~VMy~G~iVE~g~~~~~~  198 (268)
T COG4608         163 YLFI-SHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF  198 (268)
T ss_pred             EEEE-EEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence            7777 89998887765  9999999999999888774

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.74  E-value=1.4e-18  Score=167.89  Aligned_cols=159  Identities=15%  Similarity=0.067  Sum_probs=109.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    .  .|+.|    ++.++| .++..++.      ....+..+++
T Consensus        17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~p~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~   81 (200)
T cd03217          17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH----PKYEVTEG----EILFKG-EDITDLPP------EERARLGIFL   81 (200)
T ss_pred             eccceEECCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCCcc----EEEECC-EECCcCCH------HHHhhCcEEE
Confidence            345677889999999999999999999999998    5  68999    899887 43321111      1111245888


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++|++.+++....                .+.+                          ......||+||+||+    ++
T Consensus        82 v~q~~~~~~~~~~----------------~~~l--------------------------~~~~~~LS~G~~qrv----~l  115 (200)
T cd03217          82 AFQYPPEIPGVKN----------------ADFL--------------------------RYVNEGFSGGEKKRN----EI  115 (200)
T ss_pred             eecChhhccCccH----------------HHHH--------------------------hhccccCCHHHHHHH----HH
Confidence            8888663321110                0000                          111246999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEe
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g  411 (537)
                      +++++. +  |+++++|  |+|++..  ..++   ..+.+. ..+++++ +|+......  ++ ++++++|++...+
T Consensus       116 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~-sh~~~~~~~~~~d~i~~l~~G~i~~~~  187 (200)
T cd03217         116 LQLLLL-E--PDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLII-THYQRLLDYIKPDRVHVLYDGRIVKSG  187 (200)
T ss_pred             HHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence            999996 5  8999999  9998322  2233   343332 3456666 788877763  34 8899999988776

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.74  E-value=6.8e-19  Score=175.82  Aligned_cols=193  Identities=13%  Similarity=0.099  Sum_probs=121.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|++++|+|+||||||||+++|+|.    .. ..|    ++.++| ..+..++.       ..+...+++++
T Consensus        13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl----~~-~~G----~i~~~g-~~i~~~~~-------~~~~~~i~~v~   75 (248)
T PRK03695         13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL----LP-GSG----SIQFAG-QPLEAWSA-------AELARHRAYLS   75 (248)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CC-CCe----EEEECC-EecCcCCH-------HHHhhheEEec
Confidence            345677889999999999999999999999998    64 589    898887 43321111       11235589999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++..+...+.     .+       ++...... ...-....+....+..+|+.... ...+..||+||+||+    +++
T Consensus        76 q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la  138 (248)
T PRK03695         76 QQQTPPFAMPV-----FQ-------YLTLHQPDKTRTEAVASALNEVAEALGLDDKL-GRSVNQLSGGEWQRV----RLA  138 (248)
T ss_pred             ccCccCCCccH-----HH-------HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHH----HHH
Confidence            98754433221     00       00000000 00000001112233456665433 445889999999999    999


Q ss_pred             cceecc-----CCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304        346 RARVEY-----GNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI  411 (537)
Q Consensus       346 ~all~~-----~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g  411 (537)
                      ++++..     ++ |+++++|  |+|++..     ..++..+.++ +.+++++ +|+.......+  ++++++|+++..+
T Consensus       139 ~al~~~~~~~~p~-p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~-sH~~~~~~~~~d~i~~l~~G~i~~~g  215 (248)
T PRK03695        139 AVVLQVWPDINPA-GQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMS-SHDLNHTLRHADRVWLLKQGKLLASG  215 (248)
T ss_pred             HHHhccccccCCC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEC
Confidence            999851     13 7999999  9999333     2233343333 4566666 88887665443  8999999998877


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      ..+++
T Consensus       216 ~~~~~  220 (248)
T PRK03695        216 RRDEV  220 (248)
T ss_pred             CHHHH
Confidence            66554

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3e-19  Score=178.48  Aligned_cols=193  Identities=14%  Similarity=0.149  Sum_probs=121.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      .+++|.+.+|++++|+|+||||||||+++|+|.    ..     |+.|    +|.++| ..+..++.   .  ...++..
T Consensus        22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~   87 (251)
T PRK14244         22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM----NDFVPNCKVKG----ELDIDG-IDVYSVDT---N--VVLLRAK   87 (251)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccCCCCCcce----EEEECC-EehHhccc---c--hHHHhhh
Confidence            345677889999999999999999999999998    65     4799    888887 44322111   0  1123467


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cC-CccccCCccEEEeccCcc---CccchhhhhcCCC
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HL-PLVDFRSVPILVLGLDNA---GKSSIIKRILGEP  334 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l-~~~~~~~~~L~llGl~~~---gKs~li~~LSgG~  334 (537)
                      +++++|++.+++. +.     .+       ++........   .. .........+..+|+...   .....+..|||||
T Consensus        88 i~~v~q~~~~~~~-tv-----~~-------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq  154 (251)
T PRK14244         88 VGMVFQKPNPFPK-SI-----YD-------NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ  154 (251)
T ss_pred             EEEEecCcccccC-CH-----HH-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence            9999999775542 11     01       0000000000   00 000011122334454321   1133478899999


Q ss_pred             ceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCC
Q psy16304        335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCN  405 (537)
Q Consensus       335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G  405 (537)
                      +||+    +++++++. +  |+++++|  |+|++..     ...+..+ .. +.+++++ +|+...... ++ ++++++|
T Consensus       155 ~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiii-sH~~~~~~~~~d~i~~l~~G  224 (251)
T PRK14244        155 QQRL----CIARAIAV-K--PTMLLMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVV-THSMKQAKKVSDRVAFFQSG  224 (251)
T ss_pred             HHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-eCCHHHHHhhcCEEEEEECC
Confidence            9999    99999996 5  8999999  9999332     2233333 22 4567777 899887764 33 8999999


Q ss_pred             cEEEEecccch
Q psy16304        406 CQVYLISAKNL  416 (537)
Q Consensus       406 ~ii~~g~nkdl  416 (537)
                      +++..+...++
T Consensus       225 ~i~~~~~~~~~  235 (251)
T PRK14244        225 RIVEYNTTQEI  235 (251)
T ss_pred             EEEEeCCHHHH
Confidence            99887776655

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3.2e-19  Score=179.50  Aligned_cols=212  Identities=15%  Similarity=0.116  Sum_probs=129.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT----  227 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt----  227 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||+|||||+++|+|.    ..|+    
T Consensus         7 ~l~~~nl~~~~~~~~i------------------l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~g~i~   64 (261)
T PRK14258          7 AIKVNNLSFYYDTQKI------------------LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM----NELESEVR   64 (261)
T ss_pred             eEEEeeEEEEeCCeeE------------------eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cCCCCCcc
Confidence            4567777776653211                  2335677889999999999999999999999999    7764    


Q ss_pred             -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc--ccc-CcC
Q psy16304        228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL--TSA-THL  303 (537)
Q Consensus       228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l--~~~-~~l  303 (537)
                       .|    ++.++| .++..... .    ...++..+++++|++.+++ .+.     .+       ++....  ... ...
T Consensus        65 ~~G----~i~~~g-~~i~~~~~-~----~~~~~~~i~~~~q~~~l~~-~tv-----~e-------nl~~~~~~~~~~~~~  121 (261)
T PRK14258         65 VEG----RVEFFN-QNIYERRV-N----LNRLRRQVSMVHPKPNLFP-MSV-----YD-------NVAYGVKIVGWRPKL  121 (261)
T ss_pred             ccc----eEEECC-EEhhcccc-c----hHHhhccEEEEecCCccCc-ccH-----HH-------HHHHHHHhcCCCcHH
Confidence             66    677765 33321100 0    0122366899999876553 211     11       000000  000 000


Q ss_pred             CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HH
Q psy16304        304 PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WK  373 (537)
Q Consensus       304 ~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~  373 (537)
                      .........+..+|+.+   ......+..|||||+||+    +++++++. +  |+++++|  |+|++...  .+   +.
T Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~vllLDEP~~~LD~~~~~~l~~~l~  194 (261)
T PRK14258        122 EIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL----CIARALAV-K--PKVLLMDEPCFGLDPIASMKVESLIQ  194 (261)
T ss_pred             HHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            00001111122333321   112344788999999999    99999996 5  8999999  99994332  22   23


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-----CcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-----NCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-----G~ii~~g~nkdl  416 (537)
                      .+.+..+.+++++ +|+.......+  ++++++     |+++..+.+.++
T Consensus       195 ~l~~~~~~tiiiv-sH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  243 (261)
T PRK14258        195 SLRLRSELTMVIV-SHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI  243 (261)
T ss_pred             HHHHhCCCEEEEE-ECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence            3322234667777 89988876544  888998     999888777766

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.4e-19  Score=180.82  Aligned_cols=212  Identities=14%  Similarity=0.112  Sum_probs=131.7

Q ss_pred             HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---
Q psy16304        149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---  225 (537)
Q Consensus       149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---  225 (537)
                      ...++.++++.+.|+...+                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..   
T Consensus        36 ~~~~l~i~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~   93 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQA------------------LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM----NDLID   93 (285)
T ss_pred             CCceEEEEEEEEEECCEee------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCccc
Confidence            3456778888887654222                  2335677889999999999999999999999998    65   


Q ss_pred             --CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC
Q psy16304        226 --PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL  303 (537)
Q Consensus       226 --Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l  303 (537)
                        |+.|    +|.++| ..+...+. ..    ..++..+++++|++.++.. +.     .+       ++...+. ....
T Consensus        94 ~~p~~G----~I~i~G-~~i~~~~~-~~----~~~~~~i~~v~q~~~l~~~-tv-----~e-------nl~~~~~-~~~~  149 (285)
T PRK14254         94 AARVEG----ELTFRG-KNVYDADV-DP----VALRRRIGMVFQKPNPFPK-SI-----YD-------NVAYGLK-IQGY  149 (285)
T ss_pred             CCCCce----EEEECC-EEcccccc-ch----HhhhccEEEEecCCccCcC-CH-----HH-------HHHHHHH-HcCC
Confidence              6899    999887 44321111 01    1223678999999775542 11     00       0000000 0000


Q ss_pred             C--ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--H---H
Q psy16304        304 P--LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---I  371 (537)
Q Consensus       304 ~--~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l  371 (537)
                      .  ...+....+..+|+..   ......+.+|||||+||+    +++++++. +  |++++||  |+|++...  .   .
T Consensus       150 ~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv----~LAraL~~-~--p~lLLLDEPts~LD~~~~~~l~~~  222 (285)
T PRK14254        150 DGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL----CIARAIAP-D--PEVILMDEPASALDPVATSKIEDL  222 (285)
T ss_pred             cHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCCCCHHHHHHHHHH
Confidence            0  0001112222444421   012334789999999999    99999996 5  8999999  99993332  2   2


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--hh-hhcCCcEEEEecccch
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VY-LMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~-ll~~G~ii~~g~nkdl  416 (537)
                      +..+.+  +.+++++ +|+.......+  ++ ++++|+++..+...++
T Consensus       223 L~~~~~--~~tiii~-tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        223 IEELAE--EYTVVIV-THNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHhc--CCEEEEE-eCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            233332  2566666 89988876543  44 5699999887766555

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4e-19  Score=181.21  Aligned_cols=194  Identities=14%  Similarity=0.100  Sum_probs=119.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..     |+.|    +|.++| ..+.....   .  ...++..+
T Consensus        57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl----~~~~p~~~~~G----~I~~~g-~~i~~~~~---~--~~~~~~~i  122 (286)
T PRK14275         57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM----NDLIPSCHTTG----ALMFDG-EDIYGKFT---D--EVLLRKKI  122 (286)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCCCCce----EEEECC-EEhhhccc---c--hHHhhhcE
Confidence            45677889999999999999999999999997    53     4899    899887 44321110   0  11234679


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCC-ccccCCccEEEeccCc---cCccchhhhhcCCCce
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLP-LVDFRSVPILVLGLDN---AGKSSIIKRILGEPII  336 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~-~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rq  336 (537)
                      ++++|++.++.. +.     .|       ++.....  ...... ........+..+|+..   ......+..|||||+|
T Consensus       123 ~~v~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q  189 (286)
T PRK14275        123 GMVFQKPNPFPK-SI-----FD-------NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ  189 (286)
T ss_pred             EEECCCCCCCcc-CH-----HH-------HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence            999999875532 11     11       0000000  000000 0000011111233210   1123447899999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                      |+    +++++++. +  |++++||  |+|++..  ..+++.+.+. ...+++++ +|+....... + ++++++|+++.
T Consensus       190 rv----~LAraL~~-~--p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIiv-sH~~~~~~~~~d~i~~L~~G~i~~  261 (286)
T PRK14275        190 RL----CVARTLAV-E--PEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIV-THNMQQASRVSDYTMFFYEGVLVE  261 (286)
T ss_pred             HH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence            99    99999996 5  8999999  9999433  2222322211 13466666 8988887653 3 88999999988


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+...++
T Consensus       262 ~g~~~~~  268 (286)
T PRK14275        262 HAPTAQL  268 (286)
T ss_pred             eCCHHHH
Confidence            8776665

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.6e-18  Score=190.43  Aligned_cols=202  Identities=10%  Similarity=0.038  Sum_probs=126.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.+++|.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+.     .... ....+..+++
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~p~~G----~I~~~g-~~~~-----~~~~-~~~~~~~i~~  342 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV----DKRAGG----EIRLNG-KDIS-----PRSP-LDAVKKGMAY  342 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCC----eEEECC-EECC-----CCCH-HHHHHCCcEE
Confidence            34577889999999999999999999999999999    899999    998887 3331     1111 1122356899


Q ss_pred             cccCC---CCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304        265 VSQTP---LGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       265 v~Q~~---~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs  339 (537)
                      ++|++   .+++..+..  +.+......   ......+...............+..+|+........+.+|||||+||+ 
T Consensus       343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv-  418 (510)
T PRK09700        343 ITESRRDNGFFPNFSIAQNMAISRSLKD---GGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV-  418 (510)
T ss_pred             ccCccccCCCcCCCcHHHHhcccccccc---ccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH-
Confidence            99973   333332221  100000000   000000000000000011223455677752223555899999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                         ++|++++. +  |++++||  |+|++..     ..++..+.+. +.+++++ +||.......+  ++++++|+++..
T Consensus       419 ---~lAral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        419 ---LISKWLCC-C--PEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMV-SSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             ---HHHHHHhc-C--CCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEE-cCCHHHHHhhCCEEEEEECCEEEEE
Confidence               99999996 5  8999999  9999332     2233344333 4567777 89988776544  888999998876


Q ss_pred             ecc
Q psy16304        411 ISA  413 (537)
Q Consensus       411 g~n  413 (537)
                      +..
T Consensus       491 ~~~  493 (510)
T PRK09700        491 LTN  493 (510)
T ss_pred             ecC
Confidence            654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.73  E-value=4.5e-19  Score=174.55  Aligned_cols=194  Identities=12%  Similarity=0.069  Sum_probs=116.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+...+       ...++..+++++|
T Consensus        21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~q   84 (229)
T cd03254          21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF----YDPQKG----QILIDG-IDIRDIS-------RKSLRSMIGVVLQ   84 (229)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-EeHHHcC-------HHHHhhhEEEecC
Confidence            45677889999999999999999999999999    899999    888887 3332111       1123366899999


Q ss_pred             CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304        268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++.++.. +.  .+.+.. ... ....+.+.+... .+      ...+..+  |+.... ...+.+||+||+||+    +
T Consensus        85 ~~~~~~~-tv~~~~~~~~-~~~-~~~~~~~~~~~~-~l------~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv----~  149 (229)
T cd03254          85 DTFLFSG-TIMENIRLGR-PNA-TDEEVIEAAKEA-GA------HDFIMKLPNGYDTVL-GENGGNLSQGERQLL----A  149 (229)
T ss_pred             Cchhhhh-HHHHHHhccC-CCC-CHHHHHHHHHHh-Ch------HHHHHhCcccccCHh-hcCCCcCCHHHHHHH----H
Confidence            9765432 11  000000 000 000000000000 00      0000011  222221 233688999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++++. +  |+++++|  |+|++...  .+++.+.+. .+.+++++ +|+......++ ++++++|++...+...++
T Consensus       150 la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~  224 (229)
T cd03254         150 IARAMLR-D--PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIII-AHRLSTIKNADKILVLDDGKIIEEGTHDEL  224 (229)
T ss_pred             HHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            9999996 5  8999999  99994322  222222221 23456666 78877666544 899999998876554443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=5.5e-19  Score=194.97  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.+++.                   ..+++++|
T Consensus       337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G----~i~~~~~-------------------~~i~~~~q  389 (530)
T PRK15064        337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGE----LEPDSG----TVKWSEN-------------------ANIGYYAQ  389 (530)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECCc-------------------eEEEEEcc
Confidence            45678889999999999999999999999999    999999    7777651                   23667777


Q ss_pred             CCC--CCCCccceeeEEeecCcccccCCcccccccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.  +....+.                .+.+.... ...........+..+|+........+.+|||||+||+    ++
T Consensus       390 ~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv----~l  449 (530)
T PRK15064        390 DHAYDFENDLTL----------------FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM----LF  449 (530)
T ss_pred             cccccCCCCCcH----------------HHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH----HH
Confidence            643  1111111                00000000 0000111222344566632223455899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEE-EEecccch
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQV-YLISAKNL  416 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii-~~g~nkdl  416 (537)
                      +++++. +  |++++||  |+|++.... .+.++++...++++++ +||.......+  ++++++|+++ ..+...++
T Consensus       450 a~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  523 (530)
T PRK15064        450 GKLMMQ-K--PNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFV-SHDREFVSSLATRIIEITPDGVVDFSGTYEEY  523 (530)
T ss_pred             HHHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence            999996 5  8999999  999944433 2233444445677777 89998877644  8889999987 44444343

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.73  E-value=5.6e-19  Score=171.60  Aligned_cols=184  Identities=11%  Similarity=0.103  Sum_probs=116.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+....                  ..++++.+.+|++++|+|+||||||||+++|+|.    ..|++|  
T Consensus         2 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G--   57 (207)
T PRK13539          2 MLEGEDLACVRGGRVL------------------FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL----LPPAAG--   57 (207)
T ss_pred             EEEEEeEEEEECCeEE------------------EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            4567777776653222                  2345677889999999999999999999999999    899999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.++| ..+.   .   ..    .+..+++++|...++...+..            +++....... .. .......
T Consensus        58 --~i~~~g-~~~~---~---~~----~~~~~~~~~~~~~~~~~~tv~------------~~l~~~~~~~-~~-~~~~~~~  110 (207)
T PRK13539         58 --TIKLDG-GDID---D---PD----VAEACHYLGHRNAMKPALTVA------------ENLEFWAAFL-GG-EELDIAA  110 (207)
T ss_pred             --eEEECC-EeCc---c---hh----hHhhcEEecCCCcCCCCCcHH------------HHHHHHHHhc-CC-cHHHHHH
Confidence              898887 3321   1   11    235688888776543322210            0000000000 00 0011223


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+.+||+||+||+    +++++++. +  |+++++|  |+|++.     +...+..+.++ +.+++
T Consensus       111 ~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii  181 (207)
T PRK13539        111 ALEAVGLAPLA-HLPFGYLSAGQKRRV----ALARLLVS-N--RPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVI  181 (207)
T ss_pred             HHHHcCCHHHH-cCChhhcCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence            34456665433 445789999999999    99999996 5  8999999  999932     22233343333 45666


Q ss_pred             EEeCCCcchhhh
Q psy16304        385 VSHSLSGRPDDR  396 (537)
Q Consensus       385 Vvdshd~~~~~~  396 (537)
                      ++ +|+......
T Consensus       182 i~-sH~~~~~~~  192 (207)
T PRK13539        182 AA-THIPLGLPG  192 (207)
T ss_pred             EE-eCCchhhcc
Confidence            66 788776655

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=5.8e-19  Score=176.40  Aligned_cols=212  Identities=14%  Similarity=0.095  Sum_probs=130.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT----  227 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt----  227 (537)
                      ++.++++.+.|++..+                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|+    
T Consensus         4 ~l~~~~l~~~~~~~~i------------------l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   61 (251)
T PRK14249          4 KIKIRGVNFFYHKHQV------------------LKNINMDFPERQITAIIGPSGCGKSTLLRALNRM----NDIVSGAR   61 (251)
T ss_pred             eEEEEEEEEEECCeeE------------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCccccCC
Confidence            4567777776654222                  2334577889999999999999999999999999    7776    


Q ss_pred             -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304        228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~  305 (537)
                       .|    +|.++| ..+..++.   .  ...++..+++++|++.+++. ..+.+.+.. .    .....     ... ..
T Consensus        62 ~~G----~v~~~g-~~~~~~~~---~--~~~~~~~i~~v~q~~~~~~~tv~enl~~~~-~----~~~~~-----~~~-~~  120 (251)
T PRK14249         62 LEG----AVLLDN-ENIYSPNL---D--VVNLRKRVGMVFQQPNPFPKSIFDNVAFGP-R----MLGTT-----AQS-RL  120 (251)
T ss_pred             ccc----EEEECC-EEcccccc---C--hHHhhceEEEEecCCccCcCcHHHHHhhHH-H----hcCCC-----hhh-HH
Confidence             68    888887 44321111   0  12234679999999876542 001010000 0    00000     000 00


Q ss_pred             cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHH
Q psy16304        306 VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQY  375 (537)
Q Consensus       306 ~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~  375 (537)
                      .......+..+|+..   ......+..||+||+||+    +++++++. +  |++++||  |+|++...     .++..+
T Consensus       121 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~  193 (251)
T PRK14249        121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL----CIARVLAI-E--PEVILMDEPCSALDPVSTMRIEELMQEL  193 (251)
T ss_pred             HHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            000011111223211   012344788999999999    99999996 5  8999999  99994332     233333


Q ss_pred             HhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                       .+ ..+++++ +|+....... + ++++++|++...+.+.++
T Consensus       194 -~~-~~tiliv-sh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        194 -KQ-NYTIAIV-THNMQQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             -hc-CCEEEEE-eCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence             22 3567777 8888877664 3 889999999888877665

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.73  E-value=3.8e-19  Score=177.70  Aligned_cols=202  Identities=15%  Similarity=0.147  Sum_probs=118.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|..  .+.|+.|    ++.++| .++..++.   .. +  ....+++++|
T Consensus        25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~~~~~~G----~i~~~g-~~~~~~~~---~~-~--~~~~~~~~~q   91 (252)
T CHL00131         25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP--AYKILEG----DILFKG-ESILDLEP---EE-R--AHLGIFLAFQ   91 (252)
T ss_pred             cceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC--cCcCCCc----eEEECC-EEcccCCh---hh-h--heeeEEEEec
Confidence            456778899999999999999999999999961  0368999    899887 44432211   11 1  1123677888


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeeccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNR  346 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti~la~  346 (537)
                      ++.+++..+..-.+........  ... .................+..+|+........+. .|||||+||+    ++++
T Consensus        92 ~~~~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv----~la~  164 (252)
T CHL00131         92 YPIEIPGVSNADFLRLAYNSKR--KFQ-GLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN----EILQ  164 (252)
T ss_pred             cccccccccHHHHHHHhhhhhh--ccc-ccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH----HHHH
Confidence            8765543221000000000000  000 000000000001112234456665321233355 5999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEeccc
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g~nk  414 (537)
                      +++. +  |+++++|  |+|++..  ..++   ..+.+. +.+++++ +|+......  ++ ++++++|+++..+.++
T Consensus       165 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~-tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        165 MALL-D--SELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILI-THYQRLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             HHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence            9996 5  8999999  9999333  2233   333332 4566666 788877664  34 8889999998877665

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.5e-19  Score=178.98  Aligned_cols=210  Identities=11%  Similarity=0.095  Sum_probs=130.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    +.     |
T Consensus        20 ~l~~~nl~~~~~~~~i------------------l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~~~~   77 (267)
T PRK14237         20 ALSTKDLHVYYGKKEA------------------IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM----NDTIDIAR   77 (267)
T ss_pred             EEEEeeEEEEECCeee------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCccCCCC
Confidence            4577888887643221                  2345677889999999999999999999999998    65     5


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| .++...+.   .  ....+..+++++|++.++.. +.     .+       ++...........  
T Consensus        78 ~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i~~v~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~~  134 (267)
T PRK14237         78 VTG----QILYRG-IDINRKEI---N--VYEMRKHIGMVFQRPNPFAK-SI-----YE-------NITFALERAGVKDKK  134 (267)
T ss_pred             cce----EEEECC-EEcccccC---C--hHHHhcceEEEecCCccccc-cH-----HH-------HHHhHHHhcCCCCHH
Confidence            899    898887 44421100   0  11223679999999775532 11     11       0000000000000  


Q ss_pred             -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                       ........+..+|+..   ......+.+||+||+||+    +++++++. +  |+++++|  |+|++..     ..++.
T Consensus       135 ~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~  207 (267)
T PRK14237        135 VLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL----CIARAIAV-K--PDILLMDEPASALDPISTMQLEETMF  207 (267)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             0000111122333321   112344789999999999    99999997 5  8999999  9999333     22233


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . +.+++++ +|+...... ++ ++++++|+++..+...++
T Consensus       208 ~~~-~-~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        208 ELK-K-NYTIIIV-THNMQQAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             HHh-c-CCEEEEE-ecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            332 2 3566666 788877654 33 899999999988877766

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.73  E-value=4.2e-19  Score=173.97  Aligned_cols=187  Identities=13%  Similarity=0.069  Sum_probs=118.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..+++.+.+|++++|+|+||||||||+++|+|.    +.|++|    +|.++| ..+...+.    ......+..+++++
T Consensus        22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~   88 (220)
T TIGR02982        22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGL----RSVQEG----SLKVLG-QELYGASE----KELVQLRRNIGYIF   88 (220)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEhHhcCH----hHHHHHHhheEEEc
Confidence            445677889999999999999999999999999    999999    898887 43321110    11112346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++...+..     +       ++...........   ........+..+|+.... ...+.+||+||+||+    +
T Consensus        89 q~~~~~~~~t~~-----~-------n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrv----~  151 (220)
T TIGR02982        89 QAHNLLGFLTAR-----Q-------NVQMALELQPNLSYQEARERARAMLEAVGLGDHL-DYYPHNLSGGQKQRV----A  151 (220)
T ss_pred             CChhhcCCCCHH-----H-------HHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----H
Confidence            998755432220     0       0000000000000   001122334456765443 445889999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ  407 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i  407 (537)
                      ++++++. +  |+++++|  |+|++...     ..+..+.+..+.+++++ +|++...+.++ ++++++|++
T Consensus       152 laral~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       152 IARALVH-R--PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV-THDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHhhCCEEEEEECCEE
Confidence            9999996 5  8999999  88983322     33344443334566666 78876554444 777888764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=3.7e-19  Score=166.52  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=142.3

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +.++++|.+.+|+.-+|+|||||||||++..|+|.    ..|+.|    ++.++|..++.-++.      ..+.+..+|-
T Consensus        20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK----trp~~G----~v~f~g~~dl~~~~e------~~IAr~GIGR   85 (249)
T COG4674          20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK----TRPQEG----EVLFDGDTDLTKLPE------HRIARAGIGR   85 (249)
T ss_pred             eeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc----CCCCcc----eEEEcCchhhccCCH------HHHHHhccCc
Confidence            44456788899999999999999999999999999    999999    999887566554443      2456678999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      -||.|..|...+..--+  +-...+-..+...+.....-....+.+..+..+|+.... ......||.||+|.+    .+
T Consensus        86 KFQ~PtVfe~ltV~eNL--elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-~~~A~~LSHGqKQwL----EI  158 (249)
T COG4674          86 KFQKPTVFENLTVRENL--ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-DRLAALLSHGQKQWL----EI  158 (249)
T ss_pred             cccCCeehhhccHHHHH--HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-hhhhhhhccchhhhh----hh
Confidence            99999866554431000  000000111111111111111222445566778887664 555889999999999    77


Q ss_pred             ccceeccCCceEEEEEe--cCch-hhHHHHHHHHHhc--CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGS-EDFRTIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl-~~~~~l~~~~~~~--~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ..-+++ +  |+++++|  ++|+ +.......++++.  ..-.|+|+ .||+.+.....  +-+++.|.+.+.|+-++++
T Consensus       159 GMll~Q-~--P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVV-EHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         159 GMLLAQ-D--PKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV-EHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             heeecc-C--CcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEE-eccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence            777775 4  8999999  8888 4444444333332  23467788 89999988765  8899999999999887763

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.73  E-value=8.2e-19  Score=167.98  Aligned_cols=169  Identities=17%  Similarity=0.133  Sum_probs=105.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| .++.. +.   .. ...++..+++++
T Consensus         9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~-~~---~~-~~~~~~~i~~~~   74 (190)
T TIGR01166         9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL----LRPQSG----AVLIDG-EPLDY-SR---KG-LLERRQRVGLVF   74 (190)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----eEEECC-EEccc-cc---cc-hHHHHhhEEEEe
Confidence            456788889999999999999999999999999    999999    898887 44421 11   01 112235689999


Q ss_pred             cCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |++.  ++. .+.     .+       ++....... ...   ...+....+..+|+.... ...+.+||+||+||+   
T Consensus        75 q~~~~~~~~-~tv-----~~-------nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv---  136 (190)
T TIGR01166        75 QDPDDQLFA-ADV-----DQ-------DVAFGPLNL-GLSEAEVERRVREALTAVGASGLR-ERPTHCLSGGEKKRV---  136 (190)
T ss_pred             cChhhcccc-ccH-----HH-------HHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhh-hCChhhCCHHHHHHH---
Confidence            9863  221 111     00       000000000 000   001112233456766543 445889999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcch
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRP  393 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~  393 (537)
                       +++++++. +  |+++++|  |+|++..     ..++..+.+. +.+++++ +|+.+.
T Consensus       137 -~laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~-sH~~~~  189 (190)
T TIGR01166       137 -AIAGAVAM-R--PDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVIS-THDVDL  189 (190)
T ss_pred             -HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eecccc
Confidence             99999996 5  8999999  9999332     2233343333 3456666 777653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.73  E-value=7.1e-19  Score=173.04  Aligned_cols=184  Identities=16%  Similarity=0.190  Sum_probs=118.1

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      -.++++.+.+|++++|+|+||||||||+++|+|.    +.   |+.|    ++.++| .++.      ..    .++..+
T Consensus        23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~----~~~~~~~~G----~i~~~g-~~~~------~~----~~~~~i   83 (226)
T cd03234          23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR----VEGGGTTSG----QILFNG-QPRK------PD----QFQKCV   83 (226)
T ss_pred             ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc----cCCCCCCce----EEEECC-EECC------hH----HhcccE
Confidence            3456678889999999999999999999999999    88   8999    888887 3321      11    233678


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCccc--ccccCc-CCc--cccCCc-cEEEeccCccCccchhhhhcCCCce
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATH-LPL--VDFRSV-PILVLGLDNAGKSSIIKRILGEPII  336 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~-l~~--~~~~~~-~L~llGl~~~gKs~li~~LSgG~rq  336 (537)
                      ++++|++.+++..+..     +       ++...  ...... ...  ...... .+..+|+.... ...+..||+||+|
T Consensus        84 ~~~~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~q  150 (226)
T cd03234          84 AYVRQDDILLPGLTVR-----E-------TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-GNLVKGISGGERR  150 (226)
T ss_pred             EEeCCCCccCcCCcHH-----H-------HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-cccccCcCHHHHH
Confidence            9999998766543220     0       00000  000000 000  001111 34455555443 3347899999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCc-chhhh-hh-hhhhcCCc
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSG-RPDDR-CQ-VYLMSCNC  406 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~-~~~~~-~~-i~ll~~G~  406 (537)
                      |+    +++++++. +  |+++++|  |+|++..  ..++   .++.+. ..+++++ +|+. ..... ++ ++++++|+
T Consensus       151 rl----~laral~~-~--p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~-sh~~~~~~~~~~d~i~~l~~G~  221 (226)
T cd03234         151 RV----SIAVQLLW-D--PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILT-IHQPRSDLFRLFDRILLLSSGE  221 (226)
T ss_pred             HH----HHHHHHHh-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCCCHHHHHhCCEEEEEeCCE
Confidence            99    99999996 5  8999999  9998322  2233   333333 4466666 7876 34443 34 88899999


Q ss_pred             EEEE
Q psy16304        407 QVYL  410 (537)
Q Consensus       407 ii~~  410 (537)
                      ++..
T Consensus       222 i~~~  225 (226)
T cd03234         222 IVYS  225 (226)
T ss_pred             EEec
Confidence            8754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.73  E-value=1.6e-18  Score=190.52  Aligned_cols=197  Identities=11%  Similarity=0.034  Sum_probs=127.7

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -..+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| .++..+     . .+...+..++++
T Consensus       279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~i~~~-----~-~~~~~~~~i~~v  343 (510)
T PRK15439        279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGL----RPARGG----RIMLNG-KEINAL-----S-TAQRLARGLVYL  343 (510)
T ss_pred             ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc----EEEECC-EECCCC-----C-HHHHHhCCcEEC
Confidence            3567888999999999999999999999999999    899999    888886 333211     1 111233568999


Q ss_pred             ccCCC---CCCCccceeeEEeecCcccccCC-cccccc-cCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeee
Q psy16304        266 SQTPL---GRPDSRTCQVYLIMCGVHQVSGI-PDELTS-ATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLV  339 (537)
Q Consensus       266 ~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l-~~~l~~-~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs  339 (537)
                      +|++.   +++..+.     .+    ..... ...... .............+..+|+. .. ....+.+|||||+||+ 
T Consensus       344 ~q~~~~~~l~~~~t~-----~~----~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrl-  412 (510)
T PRK15439        344 PEDRQSSGLYLDAPL-----AW----NVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-AEQAARTLSGGNQQKV-  412 (510)
T ss_pred             CCChhhCCccCCCcH-----HH----HHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-ccCccccCCcHHHHHH-
Confidence            99742   3332221     00    00000 000000 00000001122334467775 33 3555899999999999 


Q ss_pred             cccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                         +++++++. +  |++++||  |+|++..  .   .++..+.+. +.+++++ +||..+....+  ++++++|+++..
T Consensus       413 ---~la~al~~-~--p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIiv-sHd~~~i~~~~d~i~~l~~G~i~~~  484 (510)
T PRK15439        413 ---LIAKCLEA-S--PQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFI-SSDLEEIEQMADRVLVMHQGEISGA  484 (510)
T ss_pred             ---HHHHHHhh-C--CCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEE
Confidence               99999996 5  8999999  9999322  2   233344333 4677777 89998887644  889999999988


Q ss_pred             ecccch
Q psy16304        411 ISAKNL  416 (537)
Q Consensus       411 g~nkdl  416 (537)
                      +.+.++
T Consensus       485 ~~~~~~  490 (510)
T PRK15439        485 LTGAAI  490 (510)
T ss_pred             EccccC
Confidence            776554

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.73  E-value=8.2e-19  Score=177.59  Aligned_cols=211  Identities=13%  Similarity=0.060  Sum_probs=130.8

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----  225 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----  225 (537)
                      .++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     
T Consensus        24 ~~l~~~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl----~~~~~~~   81 (272)
T PRK14236         24 TALEVRNLNLFYGDKQA------------------LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM----NDLVDNC   81 (272)
T ss_pred             cEEEEEEEEEEECCeeE------------------eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----CCCccCC
Confidence            35678888887653221                  2234577889999999999999999999999998    66     


Q ss_pred             CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc-CC
Q psy16304        226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH-LP  304 (537)
Q Consensus       226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~-l~  304 (537)
                      |++|    ++.++| .++...+   .  ....++..+++++|++.++.. +.     .+       ++......... ..
T Consensus        82 ~~~G----~i~i~g-~~i~~~~---~--~~~~~~~~i~~v~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~  138 (272)
T PRK14236         82 RIEG----EIRLDG-QNIYDKK---V--DVAELRRRVGMVFQRPNPFPK-SI-----YE-------NVVYGLRLQGINNR  138 (272)
T ss_pred             CCce----EEEECC-EECcccc---c--CHHHHhccEEEEecCCccCcc-cH-----HH-------HHHHHHHhcCCCcH
Confidence            4899    898887 4432111   0  011234678999999775542 11     11       00000000000 00


Q ss_pred             c--cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304        305 L--VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW  372 (537)
Q Consensus       305 ~--~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~  372 (537)
                      .  .......+..+|+..   ......+.+||+||+||+    +++++++. +  |+++++|  |+|++...     ..+
T Consensus       139 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~L  211 (272)
T PRK14236        139 RVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL----VIARAIAI-E--PEVLLLDEPTSALDPISTLKIEELI  211 (272)
T ss_pred             HHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence            0  000111122334321   011334788999999999    99999996 5  8999999  99993332     222


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+. + +.+++++ +|+....... + ++++++|+++..+..+++
T Consensus       212 ~~~~-~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        212 TELK-S-KYTIVIV-THNMQQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             HHHH-h-CCeEEEE-eCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            3333 2 3566666 8888876543 3 899999999888776665

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.73  E-value=2.7e-18  Score=163.44  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=103.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| .++..++.      ....+..+++++|
T Consensus        18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~q   82 (182)
T cd03215          18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL----RPPASG----EITLDG-KPVTRRSP------RDAIRAGIAYVPE   82 (182)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCccCH------HHHHhCCeEEecC
Confidence            34577889999999999999999999999999    999999    898887 44332210      1123356888888


Q ss_pred             CCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.   ++...                      ...+++..           +          ..||+||+||+    ++
T Consensus        83 ~~~~~~~~~~~----------------------t~~e~l~~-----------~----------~~LS~G~~qrl----~l  115 (182)
T cd03215          83 DRKREGLVLDL----------------------SVAENIAL-----------S----------SLLSGGNQQKV----VL  115 (182)
T ss_pred             CcccCcccCCC----------------------cHHHHHHH-----------H----------hhcCHHHHHHH----HH
Confidence            742   11111                      11111100           0          01999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ  407 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i  407 (537)
                      +++++. +  |+++++|  |+|++..  ..+   +..+.+. +.+++++ +|+.......+  ++++++|++
T Consensus       116 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         116 ARWLAR-D--PRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLI-SSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHcc-C--CCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEecCCcC
Confidence            999997 5  8999999  9998322  222   3333332 4566666 88887776533  778887763

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.73  E-value=2e-18  Score=165.81  Aligned_cols=155  Identities=14%  Similarity=0.207  Sum_probs=104.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      ..+++.+.+|++++|+|+||||||||+++|+|.    .  .|+.|    ++.++| .++.           ...+..+++
T Consensus        24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~~~G----~i~~~g-~~~~-----------~~~~~~i~~   83 (192)
T cd03232          24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGR----KTAGVITG----EILING-RPLD-----------KNFQRSTGY   83 (192)
T ss_pred             EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCcce----EEEECC-EehH-----------HHhhhceEE
Confidence            345677889999999999999999999999997    5  48999    888886 3331           112356888


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++|++.++...+.                .+.+...      ..                  ..+|||||+||+    ++
T Consensus        84 ~~q~~~~~~~~tv----------------~~~l~~~------~~------------------~~~LSgGe~qrv----~l  119 (192)
T cd03232          84 VEQQDVHSPNLTV----------------REALRFS------AL------------------LRGLSVEQRKRL----TI  119 (192)
T ss_pred             ecccCccccCCcH----------------HHHHHHH------HH------------------HhcCCHHHhHHH----HH
Confidence            8887654322111                1111100      00                  016999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcch-h-hhhh-hhhhcC-CcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRP-D-DRCQ-VYLMSC-NCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~-~-~~~~-i~ll~~-G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++..  ..   .++.+.+. ..+++++ +|+... . ..++ ++++++ |+++..
T Consensus       120 a~al~~-~--p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiiv-tH~~~~~~~~~~d~i~~l~~~g~i~~~  191 (192)
T cd03232         120 GVELAA-K--PSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCT-IHQPSASIFEKFDRLLLLKRGGKTVYF  191 (192)
T ss_pred             HHHHhc-C--CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEE-EcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence            999996 5  8999999  9998322  22   23333332 4566666 788763 3 3334 888888 887754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.73  E-value=5.8e-19  Score=185.19  Aligned_cols=271  Identities=13%  Similarity=0.124  Sum_probs=173.3

Q ss_pred             cCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccC----CCCCCchhHHHHHHHHH
Q psy16304         71 SIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLS----DDPAPTFEVCIVSLLVH  146 (537)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~l~~  146 (537)
                      .+.|=-|++-+|+--        ..+.||-..-.++.++...-.+-+|+.++++..+.-    +-|+|            
T Consensus       272 e~t~G~mIA~SIl~g--------RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P------------  331 (580)
T COG4618         272 EITPGMMIAGSILSG--------RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAP------------  331 (580)
T ss_pred             cCCcchhhHHHHHhh--------hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCC------------
Confidence            556666777776543        234566666666666666666666666665533221    11332            


Q ss_pred             HHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304        147 LMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  226 (537)
Q Consensus       147 ~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P  226 (537)
                         +..+.++++....+..      .          ......++|.+.+|+-+|||||+|||||||.++|.|.    ..|
T Consensus       332 ---~g~L~Ve~l~~~PPg~------~----------~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~----w~p  388 (580)
T COG4618         332 ---QGALSVERLTAAPPGQ------K----------KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI----WPP  388 (580)
T ss_pred             ---CceeeEeeeeecCCCC------C----------CcceecceeEecCCceEEEECCCCccHHHHHHHHHcc----ccc
Confidence               2233445544431111      0          2234567788999999999999999999999999999    999


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee--cCccc------ccCCccccc
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM--CGVHQ------VSGIPDELT  298 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D--s~~~~------~~~l~~~l~  298 (537)
                      +.|    .|.+|| .++..||.   +.+-    +.+||+||+..+|+.....-+.-++  .+.+.      ...+.+   
T Consensus       389 ~~G----~VRLDg-a~l~qWd~---e~lG----~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe---  453 (580)
T COG4618         389 TSG----SVRLDG-ADLRQWDR---EQLG----RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE---  453 (580)
T ss_pred             CCC----cEEecc-hhhhcCCH---HHhc----cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH---
Confidence            999    999997 88888887   3333    7899999999988762221111222  22111      111111   


Q ss_pred             ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHH
Q psy16304        299 SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQ  374 (537)
Q Consensus       299 ~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~  374 (537)
                      .+-.++..++.     .+|..+.       .||||||||+    ++||++.-  + |.+++||  -+.++..  ..+.+.
T Consensus       454 lIl~lP~GYdT-----~iG~~G~-------~LSgGQRQRI----aLARAlYG--~-P~lvVLDEPNsNLD~~GE~AL~~A  514 (580)
T COG4618         454 LILRLPQGYDT-----RIGEGGA-------TLSGGQRQRI----ALARALYG--D-PFLVVLDEPNSNLDSEGEAALAAA  514 (580)
T ss_pred             HHHhCcCCccC-----ccCCCCC-------CCCchHHHHH----HHHHHHcC--C-CcEEEecCCCCCcchhHHHHHHHH
Confidence            11112221211     4454444       3999999999    99999994  4 8999999  4445332  223333


Q ss_pred             HH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304        375 YL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       375 ~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      +.  +..+++++|+ +|.......++ +.+|++|++..+|..++...+
T Consensus       515 i~~~k~rG~~vvvi-aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         515 ILAAKARGGTVVVI-AHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             HHHHHHcCCEEEEE-ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            32  3445667777 89999888888 999999999988887776443

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.73  E-value=1.2e-18  Score=168.04  Aligned_cols=168  Identities=12%  Similarity=0.078  Sum_probs=105.7

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    ++.++| ..+....        ..++..+++++
T Consensus        17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~--------~~~~~~i~~~~   79 (198)
T TIGR01189        17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL----LRPDSG----EVRWNG-TALAEQR--------DEPHRNILYLG   79 (198)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EEcccch--------HHhhhheEEec
Confidence            345677889999999999999999999999999    999999    898887 4432211        12235688999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      |...+++..+.     .+       ++........ . ........+..+|+.... ...+.+||+||+||+    ++++
T Consensus        80 q~~~~~~~~tv-----~~-------~l~~~~~~~~-~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~  140 (198)
T TIGR01189        80 HLPGLKPELSA-----LE-------NLHFWAAIHG-G-AQRTIEDALAAVGLTGFE-DLPAAQLSAGQQRRL----ALAR  140 (198)
T ss_pred             cCcccccCCcH-----HH-------HHHHHHHHcC-C-cHHHHHHHHHHcCCHHHh-cCChhhcCHHHHHHH----HHHH
Confidence            88665433221     00       0000000000 0 001112233355665443 344889999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhh
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~  395 (537)
                      +++. +  |+++++|  |+|++..  ..+++   .+.+. +.+++++ +|+.....
T Consensus       141 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sH~~~~~~  191 (198)
T TIGR01189       141 LWLS-R--APLWILDEPTTALDKAGVALLAGLLRAHLAR-GGIVLLT-THQDLGLV  191 (198)
T ss_pred             HHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-Eccccccc
Confidence            9996 5  8999999  9999322  22333   33233 3455555 67654433

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.9e-19  Score=176.99  Aligned_cols=210  Identities=13%  Similarity=0.087  Sum_probs=129.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P---  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P---  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..  |   
T Consensus         5 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~~   62 (252)
T PRK14255          5 IITSSDVHLFYGKFEA------------------LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM----NDLIPGVT   62 (252)
T ss_pred             eEEEEeEEEEECCeeE------------------EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCCC
Confidence            4567788887653222                  2345677889999999999999999999999997    54  4   


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-  305 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-  305 (537)
                      ++|    +|.++| ..+...+.    . ...++..+++++|++.++.. +.     .+       ++...+........ 
T Consensus        63 ~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~-tv-----~~-------nl~~~~~~~~~~~~~  119 (252)
T PRK14255         63 ITG----NVSLRG-QNIYAPNE----D-VVQLRKQVGMVFQQPNPFPF-SI-----YE-------NVIYGLRLAGVKDKA  119 (252)
T ss_pred             ccc----EEEEcC-EEcccccc----c-HHHhcCeEEEEECCCccCCC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence            589    898887 44421111    1 11223578999999775541 11     11       00000000000000 


Q ss_pred             --cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304        306 --VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK  373 (537)
Q Consensus       306 --~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~  373 (537)
                        .......+..+|+..   ......+.+||+||+||+    +++++++. +  |+++++|  |+|++...     .++.
T Consensus       120 ~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~  192 (252)
T PRK14255        120 VLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV----CIARVLAV-K--PDVILLDEPTSALDPISSTQIENMLL  192 (252)
T ss_pred             HHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence              000000111222210   112344789999999999    99999996 5  8999999  99994332     2333


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+  +.+++++ +|+...... ++ ++++++|+++..+.+++.
T Consensus       193 ~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        193 ELRD--QYTIILV-THSMHQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             HHHh--CCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            4332  3566776 888887754 33 899999999988877765

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.73  E-value=1.2e-18  Score=193.04  Aligned_cols=180  Identities=17%  Similarity=0.120  Sum_probs=115.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.+++..                   .+++++
T Consensus       339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~G----~i~~~~~~-------------------~i~~v~  391 (552)
T TIGR03719       339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ----EQPDSG----TIKIGETV-------------------KLAYVD  391 (552)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCe----EEEECCce-------------------EEEEEe
Confidence            345678889999999999999999999999999    899999    77764311                   266777


Q ss_pred             cCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC-ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      |++. +++..+.     .+       ++....... ... ........+..+|+........+.+|||||+||+    ++
T Consensus       392 q~~~~~~~~~tv-----~e-------~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv----~l  454 (552)
T TIGR03719       392 QSRDALDPNKTV-----WE-------EISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRV----HL  454 (552)
T ss_pred             CCccccCCCCcH-----HH-------HHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH----HH
Confidence            7642 2222111     00       000000000 000 0001112344567653323455899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-CcEEEEeccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-NCQVYLISAK  414 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-G~ii~~g~nk  414 (537)
                      +++++. +  |++++||  |+|++.....+ .+++++..++++++ +||+......+  ++++++ |++....++.
T Consensus       455 a~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viiv-sHd~~~~~~~~d~i~~l~~~~~~~~~~g~~  526 (552)
T TIGR03719       455 AKTLKS-G--GNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVI-SHDRWFLDRIATHILAFEGDSHVEWFEGNY  526 (552)
T ss_pred             HHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEE-eCCHHHHHHhCCEEEEEECCCeEEEeCCCH
Confidence            999996 5  8999999  99994433322 33444333566776 89998887644  788876 5776555554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.73  E-value=8.6e-19  Score=171.64  Aligned_cols=192  Identities=14%  Similarity=0.056  Sum_probs=116.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++| ..+..++   .    ..++..+++++
T Consensus        21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~~~   84 (221)
T cd03244          21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL----VELSSG----SILIDG-VDISKIG---L----HDLRSRISIIP   84 (221)
T ss_pred             cceEEEECCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCC----EEEECC-EEhHhCC---H----HHHhhhEEEEC
Confidence            345677889999999999999999999999999    999999    888887 4332111   1    12346799999


Q ss_pred             cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++.++.. ..+.+.. ..  ......+.+   .+........  ..-...|+.... ...+..||+||+||+    +++
T Consensus        85 q~~~l~~~tv~enl~~-~~--~~~~~~~~~---~~~~~~l~~~--~~~l~~~l~~~~-~~~~~~LS~G~~qr~----~la  151 (221)
T cd03244          85 QDPVLFSGTIRSNLDP-FG--EYSDEELWQ---ALERVGLKEF--VESLPGGLDTVV-EEGGENLSVGQRQLL----CLA  151 (221)
T ss_pred             CCCccccchHHHHhCc-CC--CCCHHHHHH---HHHHhCcHHH--HHhccccccccc-ccCCCcCCHHHHHHH----HHH
Confidence            99875432 0110000 00  000000000   0000000000  000012222221 234788999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g  411 (537)
                      ++++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+
T Consensus       152 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~i~~l~~g~~~~~~  219 (221)
T cd03244         152 RALLR-K--SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTI-AHRLDTIIDSDRILVLDKGRVVEFD  219 (221)
T ss_pred             HHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCeEEecC
Confidence            99996 5  8999999  9999333  2233333221 23566666 78877766555 8888999987654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.72  E-value=6e-19  Score=178.53  Aligned_cols=209  Identities=13%  Similarity=0.103  Sum_probs=129.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     |
T Consensus        24 ~l~~~~l~~~~~~~~i------------------l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl----~~~~~~~~   81 (271)
T PRK14238         24 VFDTQNLNLWYGEDHA------------------LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM----VELVPSVK   81 (271)
T ss_pred             EEEEeeeEEEECCcce------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----ccCCCCCC
Confidence            4567888776653221                  2335577889999999999999999999999998    66     6


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-  305 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-  305 (537)
                      ++|    +|.++| ..+...+.    . ....+..+++++|++.++.. +.     .+       ++............ 
T Consensus        82 ~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~~  138 (271)
T PRK14238         82 TTG----KILYRD-QNIFDKSY----S-VEELRTNVGMVFQKPNPFPK-SI-----YD-------NVTYGPKIHGIKDKK  138 (271)
T ss_pred             Cce----eEEECC-EEcccccc----c-HHHHhhhEEEEecCCccccc-cH-----HH-------HHHHHHHhcCCCcHH
Confidence            999    999887 44321111    0 11223679999999875532 11     01       00000000000000 


Q ss_pred             --cccCCccEEEe----ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HH
Q psy16304        306 --VDFRSVPILVL----GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IW  372 (537)
Q Consensus       306 --~~~~~~~L~ll----Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~  372 (537)
                        .......+..+    ++... ....+..|||||+||+    +++++++. +  |+++++|  |+|++....     .+
T Consensus       139 ~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgGe~qrv----~laraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l  210 (271)
T PRK14238        139 TLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGGQQQRL----CIARCLAI-E--PDVILMDEPTSALDPISTLKVEELV  210 (271)
T ss_pred             HHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHH
Confidence              00000001111    11111 2344788999999999    99999996 5  8999999  999943322     22


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+.+  +.+++++ +|+....... + ++++++|+++..+..+++
T Consensus       211 ~~~~~--~~tiiiv-sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        211 QELKK--DYSIIIV-THNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHc--CCEEEEE-EcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33322  3566666 8998886653 3 899999999888877665

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.72  E-value=1e-18  Score=193.81  Aligned_cols=181  Identities=17%  Similarity=0.104  Sum_probs=114.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.+++..                   .+++++
T Consensus       341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G----~i~~~~~~-------------------~i~~v~  393 (556)
T PRK11819        341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ----EQPDSG----TIKIGETV-------------------KLAYVD  393 (556)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECCce-------------------EEEEEe
Confidence            345678889999999999999999999999999    899999    77764311                   266777


Q ss_pred             cCC-CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |+. .++...+.     .+       ++...................+..+|+........+.+|||||+||+    +++
T Consensus       394 q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv----~la  457 (556)
T PRK11819        394 QSRDALDPNKTV-----WE-------EISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRL----HLA  457 (556)
T ss_pred             CchhhcCCCCCH-----HH-------HHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH----HHH
Confidence            764 22222111     00       00000000000000001112344567653223445899999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-CcEEEEeccc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-NCQVYLISAK  414 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-G~ii~~g~nk  414 (537)
                      ++++. +  |++++||  |+|++..... +.+++....++++++ +||.......+  ++++++ |++....++.
T Consensus       458 ~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-tHd~~~~~~~~d~i~~l~~~g~~~~~~g~~  528 (556)
T PRK11819        458 KTLKQ-G--GNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVI-SHDRWFLDRIATHILAFEGDSQVEWFEGNF  528 (556)
T ss_pred             HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHhCCEEEEEECCCeEEEecCCH
Confidence            99996 5  8999999  9999443332 234444434566666 89998877644  778875 7776554444

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.72  E-value=1.1e-18  Score=171.71  Aligned_cols=174  Identities=17%  Similarity=0.095  Sum_probs=106.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| ..+.....            ...+.+
T Consensus        39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~~------------~~~~~~   97 (224)
T cd03220          39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI----YPPDSG----TVTVRG-RVSSLLGL------------GGGFNP   97 (224)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEchhhcc------------cccCCC
Confidence            345677889999999999999999999999999    999999    888887 33211100            001100


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                             ..+.     .+       ++.....  ..............+..+|+.... ...+.+|||||+||+    ++
T Consensus        98 -------~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~l  153 (224)
T cd03220          98 -------ELTG-----RE-------NIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-DLPVKTYSSGMKARL----AF  153 (224)
T ss_pred             -------CCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence                   0000     00       0000000  000000000111222345655443 344789999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++..  ..++   ..+.++ +.+++++ +|+....... + ++++++|+++..
T Consensus       154 aral~~-~--p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~  223 (224)
T cd03220         154 AIATAL-E--PDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILV-SHDPSSIKRLCDRALVLEKGKIRFD  223 (224)
T ss_pred             HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEec
Confidence            999996 5  8999999  9999432  2333   344333 4567777 8998877643 3 888899987653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.72  E-value=7.1e-19  Score=177.27  Aligned_cols=209  Identities=14%  Similarity=0.119  Sum_probs=127.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..     |
T Consensus        10 ~l~i~~v~~~~~~~~i------------------l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   67 (264)
T PRK14243         10 VLRTENLNVYYGSFLA------------------VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL----NDLIPGFR   67 (264)
T ss_pred             EEEEeeeEEEECCEEE------------------eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh----hcccCCCC
Confidence            4567777776653221                  2345677889999999999999999999999998    54     4


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~  304 (537)
                      +.|    ++.++| ..+...+. ..    ..++..+++++|++.++.. +.     .+       ++..... ....  .
T Consensus        68 ~~G----~i~~~g-~~i~~~~~-~~----~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~-~~~~~~~  123 (264)
T PRK14243         68 VEG----KVTFHG-KNLYAPDV-DP----VEVRRRIGMVFQKPNPFPK-SI-----YD-------NIAYGAR-INGYKGD  123 (264)
T ss_pred             Cce----EEEECC-EEcccccc-Ch----HHHhhhEEEEccCCccccc-cH-----HH-------HHHhhhh-hcCcchH
Confidence            789    888887 44321111 01    1224679999999765532 11     01       0000000 0000  0


Q ss_pred             ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304        305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ  374 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~  374 (537)
                      ........+..+|+..   ......+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ...+..
T Consensus       124 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~  196 (264)
T PRK14243        124 MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL----CIARAIAV-Q--PEVILMDEPCSALDPISTLRIEELMHE  196 (264)
T ss_pred             HHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            0000011111222211   012334778999999999    99999996 5  8999999  9998332     223334


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhhh--hhhhc---------CCcEEEEecccch
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS---------CNCQVYLISAKNL  416 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~---------~G~ii~~g~nkdl  416 (537)
                      +.+  ..+++++ +|+.......+  +++++         +|+++..+...++
T Consensus       197 ~~~--~~tvi~v-tH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~  246 (264)
T PRK14243        197 LKE--QYTIIIV-THNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI  246 (264)
T ss_pred             Hhc--CCEEEEE-ecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence            332  2566666 88888776544  77787         7999888877776

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.72  E-value=1e-18  Score=191.08  Aligned_cols=199  Identities=16%  Similarity=0.096  Sum_probs=123.7

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      -.++++.+.+|++++|+|+||||||||+++|+|.    ..+ +.|    +|.++| ..+   + .+.. . ..++..+++
T Consensus       276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~----~~~~~~G----~i~~~g-~~~---~-~~~~-~-~~~~~~i~~  340 (490)
T PRK10938        276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD----HPQGYSN----DLTLFG-RRR---G-SGET-I-WDIKKHIGY  340 (490)
T ss_pred             EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCcccCC----eEEEec-ccC---C-CCCC-H-HHHHhhceE
Confidence            3467788999999999999999999999999998    665 689    888876 221   1 1111 1 112367899


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--cccCCccEEEeccCc-cCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDFRSVPILVLGLDN-AGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++|++.++......+   .+..   ................  .......+..+|+.. .. ...+.+|||||+||+   
T Consensus       341 v~q~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv---  410 (490)
T PRK10938        341 VSSSLHLDYRVSTSV---RNVI---LSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHSLSWGQQRLA---  410 (490)
T ss_pred             ECHHHHhhcccCCcH---HHHH---HhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhhCCHHHHHHH---
Confidence            999865322110000   0000   0000000000000000  111233444677765 33 455899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEe
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g  411 (537)
                       +++++++. +  |++++||  |+|++..     ..++.++.++..++++++ +||......  ++ ++++++|+++.+.
T Consensus       411 -~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv-sHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        411 -LIVRALVK-H--PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV-SHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE-ecchhhhhhhhheeEEEecCCceEEee
Confidence             99999996 5  8999999  9999322     223334444444557777 899887764  33 8889999998876


Q ss_pred             ccc
Q psy16304        412 SAK  414 (537)
Q Consensus       412 ~nk  414 (537)
                      .++
T Consensus       486 ~~~  488 (490)
T PRK10938        486 QTK  488 (490)
T ss_pred             ccc
Confidence            654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.72  E-value=2.2e-18  Score=187.81  Aligned_cols=177  Identities=19%  Similarity=0.159  Sum_probs=126.7

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -+.+++.+.+|++||||||||+||||||++|.|.    ..|.+|    .|.++.++.+.++|+.......    .     
T Consensus       338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~----~~~~~G----~v~~g~~v~igyf~Q~~~~l~~----~-----  400 (530)
T COG0488         338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE----LGPLSG----TVKVGETVKIGYFDQHRDELDP----D-----  400 (530)
T ss_pred             ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh----cccCCc----eEEeCCceEEEEEEehhhhcCc----c-----
Confidence            3456788889999999999999999999999999    899999    9998877888888873211000    0     


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                                .               .+.+++.... ... .......+..+|+++..-.+.+..|||||+.|+    .+
T Consensus       401 ----------~---------------t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl----~L  450 (530)
T COG0488         401 ----------K---------------TVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL----LL  450 (530)
T ss_pred             ----------C---------------cHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH----HH
Confidence                      0               0011110000 000 111122333566666655667999999999999    88


Q ss_pred             ccceeccCCceEEEEEe--cCchhh-HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSED-FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~-~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      +..++. +  |.+++||  |++++. ....++..+....|+++++ |||+.+.+.++  +|.++. .+..+.+.+
T Consensus       451 a~ll~~-~--pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i~~~~~-~~~~~~g~y  520 (530)
T COG0488         451 AKLLLQ-P--PNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV-SHDRYFLDRVATRIWLVED-KVEEFEGGY  520 (530)
T ss_pred             HHHhcc-C--CCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEcC-ceeEcCCCH
Confidence            888886 4  8999999  999954 4556688888999999999 99999999887  777777 655554444

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=9.3e-19  Score=180.09  Aligned_cols=224  Identities=13%  Similarity=0.092  Sum_probs=130.8

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc----
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----  225 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----  225 (537)
                      ..++.++++.+.|+....                  ...+++.+.+|++++|+|+||||||||+++|+|.    ..    
T Consensus        43 ~~~l~i~nl~~~~~~~~i------------------L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl----~~~~~~  100 (305)
T PRK14264         43 DAKLSVEDLDVYYGDDHA------------------LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM----NDRIKA  100 (305)
T ss_pred             CceEEEEEEEEEeCCeee------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCC
Confidence            445677788877654222                  2345677889999999999999999999999998    65    


Q ss_pred             -CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCc-ccccccCc
Q psy16304        226 -PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIP-DELTSATH  302 (537)
Q Consensus       226 -Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~-~~l~~~~~  302 (537)
                       |++|    +|.++| ..+...   +..  ...++..+++++|++.++.. ..+.+.+............. ..+. ...
T Consensus       101 ~p~~G----~I~i~g-~~i~~~---~~~--~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~~~  169 (305)
T PRK14264        101 ARIDG----SVELDG-QDIYQD---GVN--LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG-RDD  169 (305)
T ss_pred             CCCce----EEEECC-EEcccc---ccc--HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccc-cCc
Confidence             6899    899887 443211   111  11233679999999775532 00101000000000000000 0000 000


Q ss_pred             CC-ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHH
Q psy16304        303 LP-LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTI  371 (537)
Q Consensus       303 l~-~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l  371 (537)
                      .. ........+..+|+..   ......+.+|||||+||+    +++++++. +  |++++||  |+|++..     ..+
T Consensus       170 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~LAraL~~-~--p~lLLLDEPtsgLD~~~~~~l~~~  242 (305)
T PRK14264        170 KDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRL----CIARCLAV-D--PEVILMDEPASALDPIATSKIEDL  242 (305)
T ss_pred             hHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHH
Confidence            00 0001111222334321   111334788999999999    99999996 5  8999999  9999332     223


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--h-hhhcCCcEEEEecccch
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--V-YLMSCNCQVYLISAKNL  416 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i-~ll~~G~ii~~g~nkdl  416 (537)
                      +..+.+  ..+++++ +|+.......+  + +++++|+++..+.+.++
T Consensus       243 L~~~~~--~~tiiiv-tH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~  287 (305)
T PRK14264        243 IEELAE--EYTVVVV-THNMQQAARISDQTAVFLTGGELVEYDDTDKI  287 (305)
T ss_pred             HHHHhc--CCEEEEE-EcCHHHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence            334333  2566666 89988876543  4 46799999988776655

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=5.7e-19  Score=176.67  Aligned_cols=211  Identities=13%  Similarity=0.109  Sum_probs=129.5

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C--
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P--  226 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P--  226 (537)
                      .++.++++.+.|++...                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..  |  
T Consensus         5 ~~i~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~   62 (253)
T PRK14261          5 IILSTKNLNLWYGEKHA------------------LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRM----NDLIPGC   62 (253)
T ss_pred             ceEEEeeeEEEECCeee------------------eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc----ccCCCCC
Confidence            35677888887654322                  2345677889999999999999999999999997    54  3  


Q ss_pred             -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--
Q psy16304        227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--  303 (537)
Q Consensus       227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--  303 (537)
                       +.|    ++.++| .++...+.    . ....+..+++++|++.++.. +.     .+       ++..........  
T Consensus        63 ~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~  119 (253)
T PRK14261         63 RITG----DILYNG-ENIMDSGA----D-VVALRRKIGMVFQRPNPFPK-SI-----YE-------NVAYGPRIHGEKNK  119 (253)
T ss_pred             Ccce----EEEECC-EEcccccc----c-hhhhhceEEEEecCCccCcc-cH-----HH-------HHHhhHHhcCCCCH
Confidence             589    898887 44432210    0 11123568999999875542 11     11       000000000000  


Q ss_pred             -CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304        304 -PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW  372 (537)
Q Consensus       304 -~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~  372 (537)
                       .........+..+|+..   ......+..||+||+||+    +++++++. +  |+++++|  |+|++...     ..+
T Consensus       120 ~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEP~~gLD~~~~~~l~~~l  192 (253)
T PRK14261        120 KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL----CIARTLAV-N--PEVILMDEPCSALDPIATAKIEDLI  192 (253)
T ss_pred             HHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence             00000111111223211   012344788999999999    99999996 5  8999999  99993332     222


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+.+  ..+++++ +|+...... ++ ++++++|+++..+..+++
T Consensus       193 ~~~~~--~~tvii~-sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        193 EDLKK--EYTVIIV-THNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHhh--CceEEEE-EcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            33322  3567777 888887754 33 889999999888777665

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.72  E-value=1.2e-18  Score=172.63  Aligned_cols=195  Identities=15%  Similarity=0.112  Sum_probs=117.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+...   ...    ..+..+++++|
T Consensus        21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~---~~~----~~~~~i~~~~q   84 (238)
T cd03249          21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF----YDPTSG----EILLDG-VDIRDL---NLR----WLRSQIGLVSQ   84 (238)
T ss_pred             ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc----CCCCCC----EEEECC-Eehhhc---CHH----HHHhhEEEECC
Confidence            45677889999999999999999999999999    999999    899887 433211   111    12356899999


Q ss_pred             CCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.++.. ..+.+.+.. ... ......+.+... .      ....+..+  |+.... ...+.+|||||+||+    ++
T Consensus        85 ~~~~~~~tv~e~l~~~~-~~~-~~~~~~~~~~~~-~------~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv----~l  150 (238)
T cd03249          85 EPVLFDGTIAENIRYGK-PDA-TDEEVEEAAKKA-N------IHDFIMSLPDGYDTLV-GERGSQLSGGQKQRI----AI  150 (238)
T ss_pred             chhhhhhhHHHHhhccC-CCC-CHHHHHHHHHHc-C------hHHHHHhhccccceee-ccCCccCCHHHHHHH----HH
Confidence            8764431 001000000 000 000000000000 0      00000011  222222 233678999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus       151 a~al~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~-sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (238)
T cd03249         151 ARALLR-N--PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVI-AHRLSTIRNADLIAVLQNGQVVEQGTHDEL  224 (238)
T ss_pred             HHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            999996 5  8999999  9999322  2233332221 23456666 78877766544 889999998877665554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.72  E-value=2.1e-18  Score=181.17  Aligned_cols=212  Identities=13%  Similarity=0.085  Sum_probs=142.4

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      ..+.++++.|.|+.-.                  +.+.++|.+.+|++-+|+|.||||||||+++|.|.    +.|++| 
T Consensus         3 ~~l~~~~itK~f~~~~------------------And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~----~~P~~G-   59 (501)
T COG3845           3 PALEMRGITKRFPGVV------------------ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL----YQPDSG-   59 (501)
T ss_pred             ceEEEeccEEEcCCEE------------------ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc----ccCCcc-
Confidence            3456788888877332                  23345678889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                         +|.++| ..+.+.+-      +...+..||+|+|++.+++..+..--.+......       ...+++.-....+..
T Consensus        60 ---eI~v~G-~~v~~~sP------~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~-------~~~~~~~~~~~~~i~  122 (501)
T COG3845          60 ---EIRVDG-KEVRIKSP------RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-------KGGLIDRRQARARIK  122 (501)
T ss_pred             ---eEEECC-EEeccCCH------HHHHHcCCcEEeeccccccccchhhhhhhcCccc-------cccccCHHHHHHHHH
Confidence               999998 66655432      3445588999999999888766521111110000       000000000011112


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vI  383 (537)
                      ......|++- ..+..+..||=|++||+    .+-+++.. +  +++++||  |+-+     +.+...++.+.+++.++|
T Consensus       123 ~l~~~yGl~v-dp~~~V~dLsVG~qQRV----EIlKaLyr-~--a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi  194 (501)
T COG3845         123 ELSERYGLPV-DPDAKVADLSVGEQQRV----EILKALYR-G--ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII  194 (501)
T ss_pred             HHHHHhCCCC-CccceeecCCcchhHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            2223455543 34566899999999999    99999996 5  8999999  6666     455555577766666555


Q ss_pred             EEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      ++  ||-..+....+  +-++..|+.+....
T Consensus       195 ~I--THKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         195 FI--THKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             EE--eccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            55  56666665544  89999999765444

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.72  E-value=1.4e-18  Score=171.77  Aligned_cols=195  Identities=14%  Similarity=0.103  Sum_probs=117.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| .++...+.       ..++..+++++|
T Consensus        19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~v~~~g-~~~~~~~~-------~~~~~~i~~~~q   82 (236)
T cd03253          19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF----YDVSSG----SILIDG-QDIREVTL-------DSLRRAIGVVPQ   82 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----EEEECC-EEhhhCCH-------HHHHhhEEEECC
Confidence            34577889999999999999999999999999    899999    888887 44322111       122367899999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCccccc-ccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++.++.. +..-.+.+. ... .  ....+. .....    .....+..+  |+.... ...+..||+||++|+    ++
T Consensus        83 ~~~~~~~-tv~~nl~~~-~~~-~--~~~~~~~~~~~~----~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl----~l  148 (236)
T cd03253          83 DTVLFND-TIGYNIRYG-RPD-A--TDEEVIEAAKAA----QIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRV----AI  148 (236)
T ss_pred             CChhhcc-hHHHHHhhc-CCC-C--CHHHHHHHHHHc----CcHHHHHhccccccchh-hcCCCcCCHHHHHHH----HH
Confidence            9775532 110000000 000 0  000000 00000    000000111  222221 222678999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus       149 a~aL~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~  222 (236)
T cd03253         149 ARAILK-N--PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI-AHRLSTIVNADKIIVLKDGRIVERGTHEEL  222 (236)
T ss_pred             HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-cCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            999996 5  8999999  9999433  2233322221 14466666 78877766544 889999998876665554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.72  E-value=2e-18  Score=169.65  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=116.4

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      .+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| .++        ..    .+..+++++|++.+
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~--------~~----~~~~i~~v~q~~~~   60 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILGL----IPPAKG----TVKVAG-ASP--------GK----GWRHIGYVPQRHEF   60 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-ccc--------hH----hhCcEEEecccccc
Confidence            3568999999999999999999999999    999999    888887 322        11    12568999998764


Q ss_pred             CCCccceeeEEeecCcccccCCcccccccCcC--CccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304        272 RPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV  349 (537)
Q Consensus       272 ~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all  349 (537)
                      +.....   .+.+.-.  .. ...........  .........+..+|+.... ...+.+||+||+||+    +++++++
T Consensus        61 ~~~~~~---tv~~~l~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~  129 (223)
T TIGR03771        61 AWDFPI---SVAHTVM--SG-RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-DRPVGELSGGQRQRV----LVARALA  129 (223)
T ss_pred             cCCCCc---cHHHHHH--hc-cccccccccCCcHHHHHHHHHHHHHhCCchhh-cCChhhCCHHHHHHH----HHHHHHh
Confidence            221110   0000000  00 00000000000  0001122233456665443 344889999999999    9999999


Q ss_pred             ccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        350 EYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       350 ~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      . +  |+++++|  |+|++..     ..++..+.++ +.+++++ +|+....... + ++++ +|+++..+...++
T Consensus       130 ~-~--p~llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvii~-sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~  199 (223)
T TIGR03771       130 T-R--PSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMT-THDLAQAMATCDRVVLL-NGRVIADGTPQQL  199 (223)
T ss_pred             c-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence            7 5  8999999  9999333     2233333333 4466666 7888876543 3 6667 7999887766655

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3.1e-18  Score=157.50  Aligned_cols=220  Identities=15%  Similarity=0.184  Sum_probs=145.6

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .++..+.+++|.|+...-..+                  ++|...+|+..||||.+|+|||||+++|++-    ..|+.|
T Consensus         4 ~PLL~V~~lsk~Yg~~~gc~~------------------vsF~l~PGeVLgiVGESGSGKtTLL~~is~r----l~p~~G   61 (258)
T COG4107           4 KPLLSVSGLSKLYGPGKGCRD------------------VSFDLYPGEVLGIVGESGSGKTTLLKCISGR----LTPDAG   61 (258)
T ss_pred             CcceeehhhhhhhCCCcCccc------------------cceeecCCcEEEEEecCCCcHHhHHHHHhcc----cCCCCC
Confidence            457788999999988776655                  3567889999999999999999999999999    999999


Q ss_pred             eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc-----Cc
Q psy16304        230 FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-----TH  302 (537)
Q Consensus       230 ~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-----~~  302 (537)
                          ++.+..  +....++... ..+.|.+.+.-.|+|.|++.      +++-.-+.+.    .++-+.+-..     ++
T Consensus        62 ----~v~Y~~r~~~~~dl~~ms-EaeRR~L~RTeWG~VhQnP~------DGLRm~VSAG----~NiGERlma~G~RHYG~  126 (258)
T COG4107          62 ----TVTYRMRDGQPRDLYTMS-EAERRRLLRTEWGFVHQNPR------DGLRMQVSAG----GNIGERLMAIGARHYGN  126 (258)
T ss_pred             ----eEEEEcCCCCchhHhhhc-hHHHHHHhhhccceeecCcc------ccceeeeccC----CccchhHHhhhhhhhhh
Confidence                776642  1222222221 12445677788999999986      2222222211    1111111111     11


Q ss_pred             CCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304        303 LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY  375 (537)
Q Consensus       303 l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~  375 (537)
                      +..  .+...+..+.++...-+..+.+|||||+||+    .+|+.++. .  |.+.|+|  |.|+     .....+++.+
T Consensus       127 iR~--~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL----QiARnLVt-~--PrLvfMDEPTGGLDVSVQARLLDllrgL  197 (258)
T COG4107         127 IRA--EAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL----QIARNLVT-R--PRLVFMDEPTGGLDVSVQARLLDLLRGL  197 (258)
T ss_pred             HHH--HHHHHHHhcccCcccccCcccccchHHHHHH----HHHHHhcc-C--CceEEecCCCCCcchhhHHHHHHHHHHH
Confidence            111  1111222233333333556889999999999    99999997 5  7999999  8888     2333445666


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ..+-+.+++++ +||.....-..  ..+|+.|.++..|-.+..
T Consensus       198 v~~l~la~viV-THDl~VarLla~rlmvmk~g~vve~GLTDrv  239 (258)
T COG4107         198 VRELGLAVVIV-THDLAVARLLADRLMVMKQGQVVESGLTDRV  239 (258)
T ss_pred             HHhcCceEEEE-echhHHHHHhhhcceeecCCCEecccccccc
Confidence            66667677777 78887665443  888999999988876644

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.71  E-value=4e-18  Score=164.07  Aligned_cols=156  Identities=15%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    .  .|+.|    ++.++| .++..      .    .++..+++
T Consensus        26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl----~~~~~~~G----~i~~~g-~~~~~------~----~~~~~i~~   86 (194)
T cd03213          26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR----RTGLGVSG----EVLING-RPLDK------R----SFRKIIGY   86 (194)
T ss_pred             ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCCce----EEEECC-EeCch------H----hhhheEEE
Confidence            345677889999999999999999999999999    8  99999    899887 43321      1    22356888


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++|++.++...+.                .+.+.      ....                  ...||+||+||+    ++
T Consensus        87 ~~q~~~~~~~~t~----------------~~~i~------~~~~------------------~~~LS~G~~qrv----~l  122 (194)
T cd03213          87 VPQDDILHPTLTV----------------RETLM------FAAK------------------LRGLSGGERKRV----SI  122 (194)
T ss_pred             ccCcccCCCCCcH----------------HHHHH------HHHH------------------hccCCHHHHHHH----HH
Confidence            8888664322111                11110      0000                  016999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcc-hhhh-hh-hhhhcCCcEEEE
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGR-PDDR-CQ-VYLMSCNCQVYL  410 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~-~~~~-~~-i~ll~~G~ii~~  410 (537)
                      +++++. +  |+++++|  |+|++..     ...++.+.++ ..+++++ +|+.. .... ++ ++++++|++...
T Consensus       123 aral~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         123 ALELVS-N--PSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICS-IHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             HHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCchHHHHHhcCEEEEEeCCEEEec
Confidence            999997 5  8999999  9898322     2233343333 4466666 78875 3442 33 888899987643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.71  E-value=3.7e-18  Score=192.16  Aligned_cols=196  Identities=15%  Similarity=0.173  Sum_probs=125.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .++++.+++|++++|+||||||||||+++|+|.    ..|+  +|    +|.++| ..+.       ..    ..+.+++
T Consensus        85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~----~~~~~~sG----~I~inG-~~~~-------~~----~~~~i~y  144 (659)
T PLN03211         85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGR----IQGNNFTG----TILANN-RKPT-------KQ----ILKRTGF  144 (659)
T ss_pred             eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC----CCCCceeE----EEEECC-EECc-------hh----hccceEE
Confidence            446677889999999999999999999999998    7774  89    899887 3321       11    1245899


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCc----cchhhhhcCCCcee
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGK----SSIIKRILGEPIIS  337 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gK----s~li~~LSgG~rqr  337 (537)
                      |+|+..+++..+..-.+.+.          ..+..-.....   ....+..+..+|+.+...    +..+..|||||+||
T Consensus       145 v~Q~~~l~~~lTV~E~l~~~----------a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR  214 (659)
T PLN03211        145 VTQDDILYPHLTVRETLVFC----------SLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR  214 (659)
T ss_pred             ECcccccCCcCCHHHHHHHH----------HHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH
Confidence            99998766543321000000          00000000000   011223344566654322    23367899999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcch-h-hhhh-hhhhcCCcE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRP-D-DRCQ-VYLMSCNCQ  407 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~-~-~~~~-i~ll~~G~i  407 (537)
                      +    +++++++. +  |++++||  |+|++....     .++++.++ +.+++++ +|+... . +..+ ++++++|++
T Consensus       215 v----~ia~aL~~-~--P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~-sH~~~~~i~~~~D~iilL~~G~i  285 (659)
T PLN03211        215 V----SIAHEMLI-N--PSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTS-MHQPSSRVYQMFDSVLVLSEGRC  285 (659)
T ss_pred             H----HHHHHHHh-C--CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCCCHHHHHhhceEEEecCCcE
Confidence            9    99999997 5  8999999  999944333     22333333 4456666 788763 3 3334 888999999


Q ss_pred             EEEecccchhhhhc
Q psy16304        408 VYLISAKNLSNGFK  421 (537)
Q Consensus       408 i~~g~nkdl~~~~~  421 (537)
                      +..|...++...+.
T Consensus       286 v~~G~~~~~~~~f~  299 (659)
T PLN03211        286 LFFGKGSDAMAYFE  299 (659)
T ss_pred             EEECCHHHHHHHHH
Confidence            99988877655443

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=8.1e-19  Score=176.28  Aligned_cols=212  Identities=14%  Similarity=0.101  Sum_probs=128.7

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+....                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|     
T Consensus         7 ~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl----~~~~~~~~   64 (259)
T PRK14260          7 AIKVKDLSFYYNTSKA------------------IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI----SELEGPVK   64 (259)
T ss_pred             eEEEEEEEEEECCeEe------------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cCcccCCc
Confidence            4567777776653221                  2334677889999999999999999999999998    664     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcC
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHL  303 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l  303 (537)
                      +.|    ++.++| .++...+.     ....++..+++++|++.++. .+.     .+       ++......   ....
T Consensus        65 ~~G----~i~~~g-~~i~~~~~-----~~~~~~~~i~~v~q~~~l~~-~tv-----~e-------nl~~~~~~~~~~~~~  121 (259)
T PRK14260         65 VEG----VVDFFG-QNIYDPRI-----NINRLRRQIGMVFQRPNPFP-MSI-----YE-------NVAYGVRISAKLPQA  121 (259)
T ss_pred             cce----EEEECC-Eecccccc-----chHhhhhheEEEecccccCC-ccH-----HH-------HHHHHHHHhcCCCHH
Confidence            589    899887 44321110     11223467999999987553 221     01       00000000   0000


Q ss_pred             CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304        304 PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL  376 (537)
Q Consensus       304 ~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~  376 (537)
                      .........+..+|+..   ......+..||+||+||+    +++++++. +  |+++++|  |+|++..  ..+++.+.
T Consensus       122 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~  194 (259)
T PRK14260        122 DLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL----CIARALAI-K--PKVLLMDEPCSALDPIATMKVEELIH  194 (259)
T ss_pred             HHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            00000111122233311   112344789999999999    99999996 4  8999999  9999433  22223222


Q ss_pred             hc-CCEEEEEEeCCCcchhhhhh--hhhhc-----CCcEEEEecccch
Q psy16304        377 GT-VSQTLLVSHSLSGRPDDRCQ--VYLMS-----CNCQVYLISAKNL  416 (537)
Q Consensus       377 ~~-~~~vIlVvdshd~~~~~~~~--i~ll~-----~G~ii~~g~nkdl  416 (537)
                      +. ...+++++ +|+..+....+  +++++     +|+++..+.++++
T Consensus       195 ~~~~~~tiii~-tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  241 (259)
T PRK14260        195 SLRSELTIAIV-THNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI  241 (259)
T ss_pred             HHhcCCEEEEE-eCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence            11 13566666 89988876544  77776     5999888877766

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.71  E-value=5e-18  Score=160.00  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=99.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.++| ..+..++       ...++..+++++|
T Consensus        20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~~   83 (171)
T cd03228          20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL----YDPTSG----EILIDG-VDLRDLD-------LESLRKNIAYVPQ   83 (171)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCC----EEEECC-EEhhhcC-------HHHHHhhEEEEcC
Confidence            45677889999999999999999999999999    999999    888887 4332111       1122356788777


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++..                       ...+++                          ||+||+||+    +++++
T Consensus        84 ~~~~~~~-----------------------t~~e~l--------------------------LS~G~~~rl----~la~a  110 (171)
T cd03228          84 DPFLFSG-----------------------TIRENI--------------------------LSGGQRQRI----AIARA  110 (171)
T ss_pred             Cchhccc-----------------------hHHHHh--------------------------hCHHHHHHH----HHHHH
Confidence            7542210                       000000                          999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      ++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|+
T Consensus       111 l~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         111 LLR-D--PPILILDEATSALDPETEALILEALRALAKGKTVIVI-AHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             Hhc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHhCCEEEEEcCCC
Confidence            996 5  8999999  9999422  2233322221 13566666 78877766544 66666653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.71  E-value=3.1e-18  Score=170.92  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=102.5

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..                   +++++|++.
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~----~~p~~G----~i~~~g-~~-------------------i~~~~q~~~   71 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLAGV----LKPDEG----DIEIEL-DT-------------------VSYKPQYIK   71 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCC----eEEECC-ce-------------------EEEeccccc
Confidence            44668999999999999999999999999    999999    888776 22                   444455433


Q ss_pred             CCCCccceeeEEeecCcccccCCccccccc-CcC-CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304        271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSA-THL-PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR  348 (537)
Q Consensus       271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~~l-~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al  348 (537)
                      .....+.                .+.+... ... .........+..+|+.... ...+.+|||||+||+    ++++++
T Consensus        72 ~~~~~tv----------------~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSgGe~qrv----~iaraL  130 (246)
T cd03237          72 ADYEGTV----------------RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-DREVPELSGGELQRV----AIAACL  130 (246)
T ss_pred             CCCCCCH----------------HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHH----HHHHHH
Confidence            2111110                0000000 000 0000011223355665443 344889999999999    999999


Q ss_pred             eccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304        349 VEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN  405 (537)
Q Consensus       349 l~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G  405 (537)
                      +. +  |+++++|  |++++..  .   .++..+.+..+.+++++ +|+.......+  +++++.+
T Consensus       131 ~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sHd~~~~~~~~d~i~~l~~~  192 (246)
T cd03237         131 SK-D--ADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV-EHDIIMIDYLADRLIVFEGE  192 (246)
T ss_pred             hc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEcCC
Confidence            96 4  8999999  9999332  2   23334433334567777 89988777543  6777543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.71  E-value=1.1e-18  Score=210.64  Aligned_cols=258  Identities=13%  Similarity=0.107  Sum_probs=148.6

Q ss_pred             HHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcc
Q psy16304        100 LRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFL  179 (537)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~  179 (537)
                      ..+...+..++.+..+.++++++++.+..++.+......      -   ...-+.++++.+.|+++.   +         
T Consensus       339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~------~---~~~~I~~~nVsf~Y~~~~---~---------  397 (1466)
T PTZ00265        339 TIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL------K---DIKKIQFKNVRFHYDTRK---D---------  397 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC------C---CCCcEEEEEEEEEcCCCC---C---------
Confidence            344556677788888889999888755443321111111      0   011356788888776431   1         


Q ss_pred             cccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHH
Q psy16304        180 DLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWK  259 (537)
Q Consensus       180 ~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~  259 (537)
                         ..+-.++++.+++|++++|||+||||||||+++|+|.    +.|+.|    +|.++|+.++..++.       ..++
T Consensus       398 ---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~i~~g~~i~~~~~-------~~lr  459 (1466)
T PTZ00265        398 ---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL----YDPTEG----DIIINDSHNLKDINL-------KWWR  459 (1466)
T ss_pred             ---CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh----ccCCCC----eEEEeCCcchhhCCH-------HHHH
Confidence               0123456788889999999999999999999999999    999999    999854344432221       2345


Q ss_pred             hhhhccccCCCCCCC-ccceeeEEee-c-C--------------cccc---------------------cCCcccccccC
Q psy16304        260 QYLGTVSQTPLGRPD-SRTCQVYLIM-C-G--------------VHQV---------------------SGIPDELTSAT  301 (537)
Q Consensus       260 ~~i~~v~Q~~~l~~~-~~~~il~v~D-s-~--------------~~~~---------------------~~l~~~l~~~~  301 (537)
                      +.+++|+|++.++.. ..+.+.+... . .              ....                     ....+.+....
T Consensus       460 ~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  539 (1466)
T PTZ00265        460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK  539 (1466)
T ss_pred             HhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence            789999999987753 2222221100 0 0              0000                     00000000000


Q ss_pred             ---cCCccccCCccEEEecc-------CccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh
Q psy16304        302 ---HLPLVDFRSVPILVLGL-------DNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE  366 (537)
Q Consensus       302 ---~l~~~~~~~~~L~llGl-------~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~  366 (537)
                         .... .+....+..+|+       ++.-   -......|||||+||+    ++||+++. +  |++++||  |++++
T Consensus       540 ~~~~~~~-~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi----aIARAll~-~--P~ILlLDEpTSaLD  611 (1466)
T PTZ00265        540 NYQTIKD-SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI----SIARAIIR-N--PKILILDEATSSLD  611 (1466)
T ss_pred             ccccCCH-HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccC
Confidence               0000 000000001111       1100   0112567999999999    99999996 5  8999999  99994


Q ss_pred             hHHH--HHHHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCC
Q psy16304        367 DFRT--IWKQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCN  405 (537)
Q Consensus       367 ~~~~--l~~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G  405 (537)
                      ...+  +.+.+.+   ..+.+++++ +|+......++ ++++++|
T Consensus       612 ~~se~~i~~~L~~~~~~~g~TvIiI-sHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        612 NKSEYLVQKTINNLKGNENRITIII-AHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEE-eCCHHHHHhCCEEEEEeCC
Confidence            3332  2233322   224566677 78888776555 8888775

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.71  E-value=4.2e-18  Score=186.26  Aligned_cols=202  Identities=11%  Similarity=0.056  Sum_probs=126.5

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++| .++..     . ......+..+++
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~-----~-~~~~~~~~~i~~  327 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI----REKSAG----TITLHG-KKINN-----H-NANEAINHGFAL  327 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC----CcCCcc----EEEECC-EECCC-----C-CHHHHHHCCCEE
Confidence            34567888999999999999999999999999999    899999    898887 43321     1 111223456889


Q ss_pred             cccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++|+..   ++...+..-..+.+    ........................+..+|+........+.+|||||+||+   
T Consensus       328 ~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv---  400 (491)
T PRK10982        328 VTEERRSTGIYAYLDIGFNSLIS----NIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV---  400 (491)
T ss_pred             cCCchhhCCcccCCcHHHheehh----hhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH---
Confidence            998753   23322210000000    00000000000000000011122344556642223556899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhh--HHHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSED--FRTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~--~~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                       +++++++. +  |++++||  |+|++.  ...+   +..+.+ .+.+++++ +||......++  ++++++|+++..+.
T Consensus       401 -~la~al~~-~--p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v-sHd~~~~~~~~d~v~~l~~g~i~~~~~  474 (491)
T PRK10982        401 -IIGRWLLT-Q--PEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII-SSEMPELLGITDRILVMSNGLVAGIVD  474 (491)
T ss_pred             -HHHHHHhc-C--CCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE-CCChHHHHhhCCEEEEEECCEEEEEEc
Confidence             99999996 5  8999999  999932  2223   334433 35677777 89988887654  88999999987665


Q ss_pred             cc
Q psy16304        413 AK  414 (537)
Q Consensus       413 nk  414 (537)
                      .+
T Consensus       475 ~~  476 (491)
T PRK10982        475 TK  476 (491)
T ss_pred             cc
Confidence            54

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.71  E-value=4e-18  Score=165.43  Aligned_cols=175  Identities=16%  Similarity=0.065  Sum_probs=113.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||+|||||+++|+|.    +.|+.|    ++.++| ..+...     .  ...++..+++++|
T Consensus        26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~--~~~~~~~i~~v~q   89 (207)
T cd03369          26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF----LEAEEG----KIEIDG-IDISTI-----P--LEDLRSSLTIIPQ   89 (207)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----eEEECC-EEhHHC-----C--HHHHHhhEEEEec
Confidence            45677889999999999999999999999999    999999    898887 433211     1  1123367999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++.. +.                .+.+........ ...   ...+++     ...+..||+|++||+    +++++
T Consensus        90 ~~~~~~~-tv----------------~~~l~~~~~~~~-~~~---~~~l~~-----~~~~~~LS~G~~qrv----~lara  139 (207)
T cd03369          90 DPTLFSG-TI----------------RSNLDPFDEYSD-EEI---YGALRV-----SEGGLNLSQGQRQLL----CLARA  139 (207)
T ss_pred             CCcccCc-cH----------------HHHhcccCCCCH-HHH---HHHhhc-----cCCCCcCCHHHHHHH----HHHHH
Confidence            9865432 11                000000000000 000   001111     233778999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS  412 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~  412 (537)
                      ++. +  |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......++ ++++++|++...++
T Consensus       140 l~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-th~~~~~~~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         140 LLK-R--PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI-AHRLRTIIDYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             Hhh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCEEEecCC
Confidence            996 5  8999999  9998332  2233332221 23456666 78777665544 88899999876654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.71  E-value=3.1e-18  Score=166.18  Aligned_cols=213  Identities=15%  Similarity=0.104  Sum_probs=133.2

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++...|+++.+..+                  ++.++++|++.+|+|+||||||||+++++|.    ..|++|
T Consensus        29 ~~li~l~~v~v~r~gk~iL~~------------------isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~----~~pssg   86 (257)
T COG1119          29 EPLIELKNVSVRRNGKKILGD------------------LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE----HPPSSG   86 (257)
T ss_pred             cceEEecceEEEECCEeeccc------------------cceeecCCCcEEEECCCCCCHHHHHHHHhcc----cCCCCC
Confidence            456777888887777666554                  3456789999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEee---cCcccccCCcccccccCcCCc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIM---CGVHQVSGIPDELTSATHLPL  305 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~D---s~~~~~~~l~~~l~~~~~l~~  305 (537)
                          .+.+.| ..+.-.++.  .+.    ++.+|+|+-.... +.....+.-.+..   ++...+.+   .++.    ..
T Consensus        87 ----~~~~~G-~~~G~~~~~--~el----rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~---~~~~----~~  148 (257)
T COG1119          87 ----DVTLLG-RRFGKGETI--FEL----RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQE---DLTA----ED  148 (257)
T ss_pred             ----ceeeee-eeccCCcch--HHH----HHHhCccCHHHHhhcccccccceeeeeccccccccccc---CCCH----HH
Confidence                777775 444333331  233    3778887654321 1111111111111   11111110   0000    01


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~  378 (537)
                      ..++...+..+|..... ++...+||.||++++    -+|||++. +  |++++||  ++|++...     ..+.++...
T Consensus       149 ~~~a~~lle~~g~~~la-~r~~~~LS~Ge~rrv----LiaRALv~-~--P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~  220 (257)
T COG1119         149 LAAAQWLLELLGAKHLA-DRPFGSLSQGEQRRV----LIARALVK-D--PELLILDEPAQGLDLIAREQLLNRLEELAAS  220 (257)
T ss_pred             HHHHHHHHHHcchhhhc-cCchhhcCHhHHHHH----HHHHHHhc-C--CCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence            12334455678877654 566899999999999    99999997 5  8999999  89984332     233344333


Q ss_pred             -CCEEEEEEeCCCcchh-hhhh-hhhhcCCcEEEEe
Q psy16304        379 -VSQTLLVSHSLSGRPD-DRCQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       379 -~~~vIlVvdshd~~~~-~~~~-i~ll~~G~ii~~g  411 (537)
                       ...+++++ +|..++. .+.. ..++++|+++..+
T Consensus       221 ~~~~~ll~V-tHh~eEi~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         221 PGAPALLFV-THHAEEIPPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             CCCceEEEE-EcchhhcccccceEEEeeCCceeecc
Confidence             23355555 4544444 4444 7888899987654

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=8.7e-19  Score=180.27  Aligned_cols=273  Identities=15%  Similarity=0.084  Sum_probs=173.6

Q ss_pred             eeeeccchhh-hhHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCc
Q psy16304         85 DVVLYNMYKA-EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNF  161 (537)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~  161 (537)
                      |+|.-|-|.- -.-|+.-++....++.++...+++++.++..+..+.+..  ||+..         .+.-.+...++   
T Consensus       201 D~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~---------~~~g~v~F~~V---  268 (497)
T COG5265         201 DLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP---------VRLGAVAFINV---  268 (497)
T ss_pred             hHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc---------cccceEEEEEE---
Confidence            4444444432 245888888888999999999999998888776655542  33321         01111222222   


Q ss_pred             ccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcE
Q psy16304        162 QTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY  241 (537)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~  241 (537)
                          .+.++|..+          .-..+++.+..|.++++||++|+||||+++.|.+.    +++++|    .|.++| .
T Consensus       269 ----~F~y~~~r~----------iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF----yD~~sG----~I~id~-q  325 (497)
T COG5265         269 ----SFAYDPRRP----------ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF----YDVNSG----SITIDG-Q  325 (497)
T ss_pred             ----Eeeccccch----------hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH----hCCcCc----eEEEcc-h
Confidence                455555522          33456778889999999999999999999999999    999999    999887 4


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEe
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVL  316 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~ll  316 (537)
                      ++....+       ...++.+|.|||+..++.+ ....+-+.-. +..++....   ...-..+..++....     ..+
T Consensus       326 dir~vtq-------~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~-----t~V  393 (497)
T COG5265         326 DIRDVTQ-------QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD-----TGV  393 (497)
T ss_pred             hHHHhHH-------HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhh-----ccc
Confidence            3332222       3445889999999887754 2222211111 111111000   000111111111111     144


Q ss_pred             ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCc
Q psy16304        317 GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSG  391 (537)
Q Consensus       317 Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~  391 (537)
                      |..+.       .||||++||+    ++|++++.  + |+++++|  |+.++...+  +...+.+- .+-+.+|+ .|..
T Consensus       394 gergl-------klSggekqrv----aiar~ilk--~-p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvi-ahrl  458 (497)
T COG5265         394 GERGL-------KLSGGEKQRV----AIARTILK--N-PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI-AHRL  458 (497)
T ss_pred             chhee-------eccCchHHHH----HHHHHHhc--C-CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEE-eehh
Confidence            44433       3999999999    99999995  4 8999999  888844333  22333222 23355566 7888


Q ss_pred             chhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304        392 RPDDRCQ-VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       392 ~~~~~~~-i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      .+.-..+ ++++++|+++..|++++|...
T Consensus       459 sti~~adeiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         459 STIIDADEIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             hhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence            8887777 999999999999999988543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.71  E-value=1.6e-18  Score=179.89  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=118.5

Q ss_pred             EEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceee
Q psy16304        201 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQV  280 (537)
Q Consensus       201 LVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il  280 (537)
                      |+|+||||||||+++|+|.    ..|++|    +|.++| .++.     ....    .++.++++||++.+++.++..  
T Consensus         1 l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~i~g-~~i~-----~~~~----~~~~i~~v~q~~~l~~~~tv~--   60 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGF----EQPDSG----SIMLDG-EDVT-----NVPP----HLRHINMVFQSYALFPHMTVE--   60 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCC----CCCCce----EEEECC-EECC-----CCCH----HHCCEEEEecCccccCCCcHH--
Confidence            5899999999999999999    999999    999887 4331     1111    235699999998766553331  


Q ss_pred             EEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEE
Q psy16304        281 YLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV  357 (537)
Q Consensus       281 ~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~l  357 (537)
                                +++...+.. ....   ...+....+..+|+.... .+.+.+|||||+||+    +++++++. +  |++
T Consensus        61 ----------enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qRv----alaraL~~-~--p~l  121 (325)
T TIGR01187        61 ----------ENVAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFA-DRKPHQLSGGQQQRV----ALARALVF-K--PKI  121 (325)
T ss_pred             ----------HHHHHHHhh-cCCCHHHHHHHHHHHHHHcCCcchh-cCChhhCCHHHHHHH----HHHHHHHh-C--CCE
Confidence                      111100000 0000   001122334466776544 455899999999999    99999996 5  899


Q ss_pred             EEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        358 FLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       358 llLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++||  |+|++..     ...+.++.++.+.+++++ +|+..+....+  +++|++|+++..+.+.++.
T Consensus       122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv-THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV-THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999  9999332     222234333334566666 89988766543  8999999999888877764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.4e-18  Score=175.08  Aligned_cols=212  Identities=11%  Similarity=0.083  Sum_probs=129.3

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      .+.++++.+.|+...+                  -.++++.+.+|++++|+|+||||||||+++|+|.    ..|     
T Consensus        16 ~l~~~~l~~~~~~~~v------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~   73 (265)
T PRK14252         16 KSEVNKLNFYYGGYQA------------------LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM----HDLYPGNH   73 (265)
T ss_pred             eEEEEEEEEEECCeee------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cCCCCCCC
Confidence            4567777776653221                  2345677889999999999999999999999998    654     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                      ++|    +|.++| ..+...+.   ......++..+++++|++.++.. +.  .+.+...            ........
T Consensus        74 ~sG----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~------------~~~~~~~~  132 (265)
T PRK14252         74 YEG----EIILHP-DNVNILSP---EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLR------------IRGVKRRS  132 (265)
T ss_pred             ccc----EEEEcC-cccccccc---ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHH------------HcCCChHH
Confidence            789    888876 33322111   00011234678999999775542 11  0000000            00000000


Q ss_pred             c-cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304        305 L-VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK  373 (537)
Q Consensus       305 ~-~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~  373 (537)
                      . .......+..+|+..   ......+..||+|++||+    +++++++. +  |+++++|  |+|++...     ..+.
T Consensus       133 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~  205 (265)
T PRK14252        133 ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL----CIARALAT-D--PEILLFDEPTSALDPIATASIEELIS  205 (265)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            0 000011111222210   112344788999999999    99999996 5  8999999  99993322     2223


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+. . +.+++++ +|+.+..... + ++++++|+++..+.++++
T Consensus       206 ~l~-~-~~tiiiv-th~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  247 (265)
T PRK14252        206 DLK-N-KVTILIV-THNMQQAARVSDYTAYMYMGELIEFGATDTI  247 (265)
T ss_pred             HHH-h-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            332 2 3567777 8998887643 3 888999999988887766

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.71  E-value=2e-18  Score=209.69  Aligned_cols=272  Identities=14%  Similarity=0.059  Sum_probs=161.1

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCCCCCch-hHH-----HHHHHH---HHHHhhhcccccCCCcccCC
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTF-EVC-----IVSLLV---HLMRGILMGIQNVPNFQTSS  165 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-----~~~~l~---~~m~~~li~~~~l~k~~~~~  165 (537)
                      -..++..+...+.++.....+++|+.++++.+.....+.++- .+.     ......   .......+.++++...|+..
T Consensus      1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271      1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence            344566666666777777788888887776443221111000 000     000000   00001134455555555321


Q ss_pred             CCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE
Q psy16304        166 VLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL  245 (537)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~  245 (537)
                      .                ..+-.++++.+++|+++||||++|||||||+++|.|.    +. +.|    +|.++| +++.-
T Consensus      1231 ~----------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl----~~-~~G----~I~IdG-~di~~ 1284 (1490)
T TIGR01271      1231 G----------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL----LS-TEG----EIQIDG-VSWNS 1284 (1490)
T ss_pred             C----------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh----cC-CCc----EEEECC-EEccc
Confidence            0                1123456788999999999999999999999999999    75 789    999997 66654


Q ss_pred             eecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccC-CccEEEeccCccC
Q psy16304        246 YDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR-SVPILVLGLDNAG  322 (537)
Q Consensus       246 ~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llGl~~~g  322 (537)
                      ++.   ..    +++.+++++|++.+|.. ..+++    | ......+.+.+.++...-.+..... .-.-..+|..   
T Consensus      1285 i~~---~~----lR~~is~IpQdp~LF~GTIR~NL----dp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~--- 1350 (1490)
T TIGR01271      1285 VTL---QT----WRKAFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG--- 1350 (1490)
T ss_pred             CCH---HH----HHhceEEEeCCCccCccCHHHHh----CcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccC---
Confidence            433   23    44889999999998865 22222    1 0000000111111111000000000 0000022221   


Q ss_pred             ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304        323 KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRC  397 (537)
Q Consensus       323 Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~  397 (537)
                          -..|||||+|++    ++||+++. +  +++++||  |++++...+  +.+.+.+. .+.+++++ +|.......+
T Consensus      1351 ----G~nLSgGQrQrL----~LARALLr-~--~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I-aHRl~ti~~~ 1418 (1490)
T TIGR01271      1351 ----GYVLSNGHKQLM----CLARSILS-K--AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS-EHRVEALLEC 1418 (1490)
T ss_pred             ----CCcCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhC
Confidence                124999999999    99999996 5  7999999  999944332  22333332 34577777 8998888776


Q ss_pred             h-hhhhcCCcEEEEecccchhh
Q psy16304        398 Q-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       398 ~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      + +++|++|+++..|++.++..
T Consensus      1419 DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1419 QQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             CEEEEEECCEEEEeCCHHHHHc
Confidence            6 99999999999999998853

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=2.1e-18  Score=174.84  Aligned_cols=208  Identities=14%  Similarity=0.135  Sum_probs=128.3

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----  226 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----  226 (537)
                      ++.++++.+.|+...                  +..++++.+.+|++++|+|+||||||||+++|+|.    ..|     
T Consensus        20 ~l~~~nl~~~~~~~~------------------~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl----~~~~~~~~   77 (274)
T PRK14265         20 VFEVEGVKVFYGGFL------------------ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM----NDLIPGAK   77 (274)
T ss_pred             eEEEeeEEEEeCCeE------------------EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccccCCC
Confidence            466778887765321                  12345677889999999999999999999999998    653     


Q ss_pred             ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                      +.|    +|.++| .++...+.    . ...++..+++++|++.++.. +.     .+       ++..... .....  
T Consensus        78 ~~G----~i~~~g-~~l~~~~~----~-~~~~~~~i~~v~q~~~l~~~-tv-----~~-------nl~~~~~-~~~~~~~  133 (274)
T PRK14265         78 VEG----RLLYRD-RNIYDSQI----N-SVKLRRQVGMVFQRPNPFPK-SI-----YE-------NIAFAPR-ANGYKGN  133 (274)
T ss_pred             cCc----eEEECC-Eecccccc----h-hHHHhhcEEEEccCCccccc-cH-----HH-------HHHhHHH-hcCchHH
Confidence            689    888887 44321110    1 11234679999999775532 11     11       0000000 00000  


Q ss_pred             ccccCCccEEEecc----CccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304        305 LVDFRSVPILVLGL----DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK  373 (537)
Q Consensus       305 ~~~~~~~~L~llGl----~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~  373 (537)
                      ........+..+|+    ... ....+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ..++.
T Consensus       134 ~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv----~LAraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~  205 (274)
T PRK14265        134 LDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRL----CIARAIAM-K--PDVLLMDEPCSALDPISTRQVEELCL  205 (274)
T ss_pred             HHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHH----HHHHHHhh-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00000111112222    111 2344788999999999    99999996 5  8999999  9999332     22333


Q ss_pred             HHHhcCCEEEEEEeCCCcchhhhhh--hhhhc---------CCcEEEEecccch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS---------CNCQVYLISAKNL  416 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~---------~G~ii~~g~nkdl  416 (537)
                      .+. + +.+++++ +|+.......+  +++++         +|+++..+...++
T Consensus       206 ~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~  256 (274)
T PRK14265        206 ELK-E-QYTIIMV-THNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM  256 (274)
T ss_pred             HHh-c-CCEEEEE-eCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence            332 2 3567777 89988776544  77776         7999888877766

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.7e-18  Score=172.86  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=120.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      .++++.+.+|++++|+|+||+|||||+++|+|.    ..     |++|    +|.++| .++...+.    . ...++..
T Consensus        20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~~~G----~v~~~g-~~i~~~~~----~-~~~~~~~   85 (250)
T PRK14266         20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM----NDLIPGFRHEG----HIYLDG-VDIYDPAV----D-VVELRKK   85 (250)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----hccCCCCCCcc----EEEECC-EEcccccc----c-HHHHhhh
Confidence            345677889999999999999999999999997    53     4899    899887 44422110    0 1123467


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPI  335 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~r  335 (537)
                      +++++|++.++.. +.     .+       ++...........   ........+..+|+..   ......+..||+||+
T Consensus        86 i~~~~q~~~~~~~-t~-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~  152 (250)
T PRK14266         86 VGMVFQKPNPFPK-SI-----FD-------NVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ  152 (250)
T ss_pred             eEEEecCCccCcc-hH-----HH-------HHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence            9999999875542 11     00       0000000000000   0000111122233311   112344788999999


Q ss_pred             eeeecccccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304        336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~  406 (537)
                      ||+    +++++++. +  |+++++|  |+|++...  .   ++..+. + +.+++++ +|+.......+  ++++++|+
T Consensus       153 qrv----~laral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~-sh~~~~~~~~~~~i~~l~~G~  222 (250)
T PRK14266        153 QRL----CIARTIAV-S--PEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIV-THNMQQATRVSKYTSFFLNGE  222 (250)
T ss_pred             HHH----HHHHHHHc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEE-ECCHHHHHhhcCEEEEEECCe
Confidence            999    99999996 5  8999999  99984332  2   223332 2 3566776 78888776655  67789999


Q ss_pred             EEEEecccch
Q psy16304        407 QVYLISAKNL  416 (537)
Q Consensus       407 ii~~g~nkdl  416 (537)
                      +...+.+.++
T Consensus       223 i~~~g~~~~~  232 (250)
T PRK14266        223 IIESGLTDQI  232 (250)
T ss_pred             EEEeCCHHHH
Confidence            9988777665

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.70  E-value=5.2e-18  Score=157.23  Aligned_cols=225  Identities=16%  Similarity=0.095  Sum_probs=143.6

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .+..+++++|.|....-         .|..-.+.+++.+||+..+|..++++|.||+|||||.++|+|.    +.||+| 
T Consensus         3 ~LLeV~nLsKtF~~~~~---------lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm----i~PTsG-   68 (267)
T COG4167           3 TLLEVRNLSKTFRYRTG---------LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM----IEPTSG-   68 (267)
T ss_pred             chhhhhhhhhhhhhhhh---------hhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc----cCCCCc-
Confidence            45678888886543221         1222236688889999999999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcccc--
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF--  308 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~--  308 (537)
                         ++.++| ..+..-|    ..+|   .+.+.++||++.-...-...+..+.|          .-+...-.+....+  
T Consensus        69 ---~il~n~-~~L~~~D----y~~R---~k~IRMiFQDpnts~NPRl~iGqiLd----------~PL~l~T~~~~~~R~~  127 (267)
T COG4167          69 ---EILIND-HPLHFGD----YSFR---SKRIRMIFQDPNTSLNPRLRIGQILD----------FPLRLNTDLEPEQRRK  127 (267)
T ss_pred             ---eEEECC-ccccccc----hHhh---hhheeeeecCCccccChhhhhhhHhc----------chhhhcccCChHHHHH
Confidence               999987 5444433    2333   36799999998722111111111111          11111111211111  


Q ss_pred             -CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-H-HHHHHH--HhcCCE
Q psy16304        309 -RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-R-TIWKQY--LGTVSQ  381 (537)
Q Consensus       309 -~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-~-~l~~~~--~~~~~~  381 (537)
                       .-..+..+|+-.....-.++.||-|++|||    ++|+|++. +  |++++.|  .++++.. + +++...  +++..+
T Consensus       128 ~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV----aLARALIL-~--P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G  200 (267)
T COG4167         128 QIFETLRMVGLLPDHANYYPHMLAPGQKQRV----ALARALIL-R--PKIIIADEALASLDMSMRSQLINLMLELQEKQG  200 (267)
T ss_pred             HHHHHHHHhccCccccccchhhcCchhHHHH----HHHHHHhc-C--CcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC
Confidence             122344667543333455899999999999    99999997 5  8999999  6666322 2 222221  223344


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +-+++-+.+.-......  +++|+.|+++.+|.+.++.
T Consensus       201 iSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             ceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence            44444344444444443  9999999999999999873

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.70  E-value=2.8e-18  Score=172.18  Aligned_cols=195  Identities=15%  Similarity=0.086  Sum_probs=120.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|++|    ++.++| .++..++.       ...+..+++++
T Consensus        38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~i~g-~~i~~~~~-------~~~~~~i~~v~  101 (257)
T cd03288          38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM----VDIFDG----KIVIDG-IDISKLPL-------HTLRSRLSIIL  101 (257)
T ss_pred             eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc----cCCCCC----eEEECC-EEhhhCCH-------HHHhhhEEEEC
Confidence            345677889999999999999999999999999    999999    899887 44322111       12236789999


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      |++.++.. +.  ....+ ........+.+.+... .+      ...+..+  |+.... ......||+||+||+    +
T Consensus       102 q~~~l~~~-tv--~~nl~~~~~~~~~~~~~~l~~~-~l------~~~~~~~~~~l~~~~-~~~~~~LS~G~~qrl----~  166 (257)
T cd03288         102 QDPILFSG-SI--RFNLDPECKCTDDRLWEALEIA-QL------KNMVKSLPGGLDAVV-TEGGENFSVGQRQLF----C  166 (257)
T ss_pred             CCCccccc-HH--HHhcCcCCCCCHHHHHHHHHHh-Cc------HHHHhhcccccCcEe-ccCCCcCCHHHHHHH----H
Confidence            99875532 11  00000 0000000000000000 00      0001111  332221 223678999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++++. +  |+++++|  |+|++....  +++.+.+ ..+.+++++ +|+......++ ++++++|+++..+...++
T Consensus       167 laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~-sh~~~~~~~~dri~~l~~G~i~~~g~~~~~  241 (257)
T cd03288         167 LARAFVR-K--SSILIMDEATASIDMATENILQKVVMTAFADRTVVTI-AHRVSTILDADLVLVLSRGILVECDTPENL  241 (257)
T ss_pred             HHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEE-ecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999996 5  8999999  999943322  2222222 123556666 78877776655 899999999887766555

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.70  E-value=2.3e-18  Score=169.01  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC-cE--EEEEeecCCCchhhHHHHhhhh
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KY--EVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g-~~--~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.+++ +.  ++..++.   ..........++
T Consensus        25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~~~g~~~~~~~~~~---~~~~~~~~~~i~   93 (224)
T TIGR02324        25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN----YLPDSG----RILVRHEGAWVDLAQASP---REVLEVRRKTIG   93 (224)
T ss_pred             ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEEecCCCccchhhcCH---HHHHHHHhcceE
Confidence            456678889999999999999999999999999    999999    888763 11  2211110   111112235689


Q ss_pred             ccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      +++|++.+++..+..            +++...+... ...   ........+..+|+........+.+||+||+||+  
T Consensus        94 ~~~q~~~~~~~~tv~------------e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl--  158 (224)
T TIGR02324        94 YVSQFLRVIPRVSAL------------EVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV--  158 (224)
T ss_pred             EEecccccCCCccHH------------HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH--
Confidence            999997755432220            0000000000 000   0011122334566654322445889999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR  396 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~  396 (537)
                        +++++++. +  |+++++|  |+|++..     ...+..+.+. +.+++++ +|+......
T Consensus       159 --~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-sH~~~~~~~  214 (224)
T TIGR02324       159 --NIARGFIA-D--YPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGI-FHDEEVREL  214 (224)
T ss_pred             --HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHHH
Confidence              99999996 4  8999999  9999322     2233343333 4566666 788776654

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.70  E-value=2.2e-18  Score=169.37  Aligned_cols=205  Identities=15%  Similarity=0.147  Sum_probs=122.4

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...   +            ..+-.++++.+.+|++++|+|+||||||||+++|+|.    ..|++| 
T Consensus        10 ~~l~~~~l~~~~~~~~---~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G-   69 (226)
T cd03248          10 GIVKFQNVTFAYPTRP---D------------TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF----YQPQGG-   69 (226)
T ss_pred             ceEEEEEEEEEeCCCC---C------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCc-
Confidence            3566788888765321   0            0012345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                         ++.++| ..+...+       ....+..+++++|++.++.. ..+.+.+...    . ....+    ..........
T Consensus        70 ---~i~~~g-~~~~~~~-------~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~----~-~~~~~----~~~~~~~~~~  129 (226)
T cd03248          70 ---QVLLDG-KPISQYE-------HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ----S-CSFEC----VKEAAQKAHA  129 (226)
T ss_pred             ---EEEECC-CchHHcC-------HHHHHhhEEEEecccHHHhhhHHHHhccccC----C-CCHHH----HHHHHHHcCc
Confidence               888887 3322111       11223668999998765432 0111100000    0 00000    0000000001


Q ss_pred             CccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCC
Q psy16304        310 SVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVS  380 (537)
Q Consensus       310 ~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~  380 (537)
                      ...+..+  |+.... ...+.+|||||+||+    +++++++. +  |+++++|  |+|++..     ...+..+. . +
T Consensus       130 ~~~l~~l~~gl~~~~-~~~~~~LSgG~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~  199 (226)
T cd03248         130 HSFISELASGYDTEV-GEKGSQLSGGQKQRV----AIARALIR-N--PQVLILDEATSALDAESEQQVQQALYDWP-E-R  199 (226)
T ss_pred             HHHHHhccccccchh-hcCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-C
Confidence            1112223  554433 333789999999999    99999996 5  8999999  9999322     22223332 2 3


Q ss_pred             EEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        381 QTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      .+++++ +|+......++ ++++++|+
T Consensus       200 ~tii~~-sh~~~~~~~~d~i~~l~~g~  225 (226)
T cd03248         200 RTVLVI-AHRLSTVERADQILVLDGGR  225 (226)
T ss_pred             CEEEEE-ECCHHHHHhCCEEEEecCCc
Confidence            566666 78877766544 77777775

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.69  E-value=6.3e-18  Score=162.64  Aligned_cols=167  Identities=16%  Similarity=0.128  Sum_probs=105.4

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++.++| ..+..        ..   ...+++++|.
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~--------~~---~~~~~~~~~~   78 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI----MQPSSG----NIYYKN-CNINN--------IA---KPYCTYIGHN   78 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-cccCh--------hh---hhhEEeccCC
Confidence            5677889999999999999999999999999    999999    888887 33211        11   1347787877


Q ss_pred             CCCCCCccceeeEEeecCcccccCCcccccccCc-CCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH-LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~-l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ...+...+.                .+.+..... ..........+..+|+.... ...+..||+||++|+    +++++
T Consensus        79 ~~~~~~~tv----------------~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rl----~la~a  137 (195)
T PRK13541         79 LGLKLEMTV----------------FENLKFWSEIYNSAETLYAAIHYFKLHDLL-DEKCYSLSSGMQKIV----AIARL  137 (195)
T ss_pred             cCCCccCCH----------------HHHHHHHHHhcccHHHHHHHHHHcCCHhhh-ccChhhCCHHHHHHH----HHHHH
Confidence            543322111                000000000 00001111222344554433 344889999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhhhh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQVY  400 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~i~  400 (537)
                      ++. +  |+++++|  |+|++..  ..+++.+.  ...+.+++++ +|+.......+++
T Consensus       138 l~~-~--p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~i~~~~~~  192 (195)
T PRK13541        138 IAC-Q--SDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS-SHLESSIKSAQIL  192 (195)
T ss_pred             Hhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCccccchhhee
Confidence            996 5  8999999  8999332  22333221  2334566666 8888877665533

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.69  E-value=5.3e-18  Score=170.99  Aligned_cols=217  Identities=15%  Similarity=0.093  Sum_probs=124.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcch-hhc-ccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTF-ENF-LDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .+.+.|+.+.|.......++...+ ..+ ......+-.++++.+.+|++++|+|+||||||||+++|+|.    +.|+.|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl----~~p~~G   79 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS----LSPTVG   79 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce
Confidence            356677777776532211111100 000 11223345678889999999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                          ++.++|...+.. ...+...... ....+.+. .         .     . ..   .. ..+...         ..
T Consensus        80 ----~I~~~g~~~~~~-~~~~~~~~~t-v~enl~~~-~---------~-----~-~~---~~-~~~~~~---------~~  124 (264)
T PRK13546         80 ----KVDRNGEVSVIA-ISAGLSGQLT-GIENIEFK-M---------L-----C-MG---FK-RKEIKA---------MT  124 (264)
T ss_pred             ----EEEECCEEeEEe-cccCCCCCCc-HHHHHHHH-H---------H-----H-cC---CC-HHHHHH---------HH
Confidence                888887321110 0111100000 00111000 0         0     0 00   00 000000         00


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~v  382 (537)
                      ...+..+|+.... ...+..||+||++|+    +++++++. +  |++++||  |+|++..  ..++   ..+. ..+.+
T Consensus       125 ~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~Laral~~-~--p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~t  195 (264)
T PRK13546        125 PKIIEFSELGEFI-YQPVKKYSSGMRAKL----GFSINITV-N--PDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKT  195 (264)
T ss_pred             HHHHHHcCCchhh-cCCcccCCHHHHHHH----HHHHHHhh-C--CCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCE
Confidence            0111123333322 334788999999999    99999996 5  8999999  9999432  2233   3332 23456


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++ +|+......++  ++++++|++...++..++.
T Consensus       196 iIii-sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  231 (264)
T PRK13546        196 IFFV-SHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL  231 (264)
T ss_pred             EEEE-cCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence            7777 88888776543  8899999998887766653

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=5.2e-18  Score=164.70  Aligned_cols=183  Identities=19%  Similarity=0.221  Sum_probs=116.9

Q ss_pred             ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecC-CCc-hh--hH--
Q psy16304        183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG-GSE-DF--RT--  256 (537)
Q Consensus       183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~-G~~-~~--r~--  256 (537)
                      +.+-++++|++.+|+++||||+||||||||+++|+|.    +.||+|    ++.+.|.+. .+++.+ |.. +.  +.  
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi----~~Pt~G----~v~v~G~v~-~li~lg~Gf~pelTGreNi  110 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI----YKPTSG----KVKVTGKVA-PLIELGAGFDPELTGRENI  110 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc----cCCCCc----eEEEcceEe-hhhhcccCCCcccchHHHH
Confidence            3455678899999999999999999999999999999    999999    999887222 122221 111 00  00  


Q ss_pred             -HHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCc
Q psy16304        257 -IWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPI  335 (537)
Q Consensus       257 -~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~r  335 (537)
                       +....+|+           +.             ++..+            +.+..+..-++.+. .+.+++.+|.||+
T Consensus       111 ~l~~~~~G~-----------~~-------------~ei~~------------~~~eIieFaELG~f-i~~PvktYSSGM~  153 (249)
T COG1134         111 YLRGLILGL-----------TR-------------KEIDE------------KVDEIIEFAELGDF-IDQPVKTYSSGMY  153 (249)
T ss_pred             HHHHHHhCc-----------cH-------------HHHHH------------HHHHHHHHHHHHHH-hhCchhhccHHHH
Confidence             00011111           00             00000            11111112222222 3556899999999


Q ss_pred             eeeecccccccceeccCCceEEEEEe---cCchhhHHH----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304        336 ISLVPTVGFNRARVEYGNKYEVFLYD---LGGSEDFRT----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       336 qrvs~ti~la~all~~~e~p~lllLD---T~Gl~~~~~----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~  406 (537)
                      .|+    +++.+.-. +  |+++++|   ..|-..+.+    .+.++.++. .+++++ +||.......|  ..++++|+
T Consensus       154 aRL----aFsia~~~-~--pdILllDEvlavGD~~F~~K~~~rl~e~~~~~-~tiv~V-SHd~~~I~~~Cd~~i~l~~G~  224 (249)
T COG1134         154 ARL----AFSVATHV-E--PDILLLDEVLAVGDAAFQEKCLERLNELVEKN-KTIVLV-SHDLGAIKQYCDRAIWLEHGQ  224 (249)
T ss_pred             HHH----HHhhhhhc-C--CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC-CEEEEE-ECCHHHHHHhcCeeEEEeCCE
Confidence            999    88888775 5  8999999   444444433    334544444 555556 78887777655  88899999


Q ss_pred             EEEEecccchhhhh
Q psy16304        407 QVYLISAKNLSNGF  420 (537)
Q Consensus       407 ii~~g~nkdl~~~~  420 (537)
                      +...|.+++....+
T Consensus       225 i~~~G~~~~vi~~Y  238 (249)
T COG1134         225 IRMEGSPEEVIPAY  238 (249)
T ss_pred             EEEcCCHHHHHHHH
Confidence            99999998875443

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=4.3e-18  Score=171.39  Aligned_cols=194  Identities=15%  Similarity=0.098  Sum_probs=119.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    +.|     +.|    +|.++| .++...+.   .  ...++..
T Consensus        25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~~~~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~   90 (261)
T PRK14263         25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM----NDLVKGFRFEG----HVHFLG-QDVYGKGV---D--PVVVRRY   90 (261)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc----cccccCCCCce----EEEECC-Eecccccc---c--hHhhhhc
Confidence            345677889999999999999999999999999    765     788    999987 44322111   1  1123467


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCcc---CccchhhhhcCCCce
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNA---GKSSIIKRILGEPII  336 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rq  336 (537)
                      +++++|++.++. .+.     .+       ++..... .....  ........+..+|+...   .....+..||+||+|
T Consensus        91 i~~v~q~~~~~~-~tv-----~e-------nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q  156 (261)
T PRK14263         91 IGMVFQQPNPFS-MSI-----FD-------NVAFGLR-LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQ  156 (261)
T ss_pred             eEEEecCCcccc-ccH-----HH-------HHHHHHh-hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence            999999977542 111     01       0000000 00000  00011112223333211   112346789999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhc------
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMS------  403 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~------  403 (537)
                      |+    +++++++. +  |+++++|  |+|++..  ..+++.+.+. ...+++++ +|+....... + +++++      
T Consensus       157 rv----~laral~~-~--p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i-sH~~~~i~~~~d~v~~l~~~~~~~  228 (261)
T PRK14263        157 RL----CIARAIAT-E--PEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV-THNMQQAIRVADTTAFFSVDISQG  228 (261)
T ss_pred             HH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHhCCEEEEEecccccc
Confidence            99    99999996 5  8999999  9999322  2233322221 13466666 8888876553 3 77784      


Q ss_pred             --CCcEEEEecccch
Q psy16304        404 --CNCQVYLISAKNL  416 (537)
Q Consensus       404 --~G~ii~~g~nkdl  416 (537)
                        +|+++..+...++
T Consensus       229 ~~~G~i~~~g~~~~~  243 (261)
T PRK14263        229 TRTGYLVEMGPTAQI  243 (261)
T ss_pred             cCCceEEEeCCHHHH
Confidence              7999988877665

>PLN03232 ABC transporter C family member; Provisional

Probab=99.68  E-value=5.6e-18  Score=205.98  Aligned_cols=254  Identities=14%  Similarity=0.094  Sum_probs=163.1

Q ss_pred             chhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304         91 MYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD  170 (537)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~  170 (537)
                      .|..-..|+..+...+..++.+..+++|+.+++..+.....+.++...          ....+.++++...|+...    
T Consensus       563 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~----------~~~~I~~~~vsF~y~~~~----  628 (1495)
T PLN03232        563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQP----------GAPAISIKNGYFSWDSKT----  628 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCC----------CCCcEEEEeeEEEcCCCC----
Confidence            345556788899999999999999999999998754322211111100          012355666666554210    


Q ss_pred             CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                       ..          ..-.++++.+++|++++|+|++|||||||++.|.|.    +.|+.|    .+.              
T Consensus       629 -~~----------~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~G----~i~--------------  675 (1495)
T PLN03232        629 -SK----------PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE----LSHAET----SSV--------------  675 (1495)
T ss_pred             -CC----------ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CcccCC----CEE--------------
Confidence             00          113456788889999999999999999999999999    999998    221              


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI  326 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l  326 (537)
                        ..+    ..+++|+|++.++.. ..+++.+.-+.+.+++..+.+..   ..+..++..     .-..+|..+.     
T Consensus       676 --~~~----~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~G-----d~T~IGe~G~-----  739 (1495)
T PLN03232        676 --VIR----GSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGR-----DLTEIGERGV-----  739 (1495)
T ss_pred             --Eec----CcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCC-----CCceecCCCc-----
Confidence              112    468999999998865 44555443222222222211110   011111111     0113444332     


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEEEEEEeCCCcchhhhhh-h
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-V  399 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i  399 (537)
                        .||||||||+    ++|||++. +  |++++||  |++++...  .+.+..+..  .+.+++++ +|+......++ +
T Consensus       740 --~LSGGQkQRI----aLARAly~-~--~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv-TH~~~~l~~aD~I  809 (1495)
T PLN03232        740 --NISGGQKQRV----SMARAVYS-N--SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV-TNQLHFLPLMDRI  809 (1495)
T ss_pred             --ccCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE-ECChhhHHhCCEE
Confidence              3999999999    99999996 5  8999999  99996443  244444332  23455555 67777776666 8


Q ss_pred             hhhcCCcEEEEecccchh
Q psy16304        400 YLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       400 ~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++|+++..|+.+++.
T Consensus       810 i~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        810 ILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             EEEeCCEEEEecCHHHHH
Confidence            999999999999887774

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.68  E-value=2.1e-17  Score=156.71  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..                   +++++|.  
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~-------------------i~~~~q~--   69 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ----LIPNGD----NDEWDG-IT-------------------PVYKPQY--   69 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCc----EEEECC-EE-------------------EEEEccc--
Confidence            56779999999999999999999999999    999999    888776 21                   2332221  


Q ss_pred             CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304        271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE  350 (537)
Q Consensus       271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~  350 (537)
                                            ..                                   ||+||+||+    +++++++.
T Consensus        70 ----------------------~~-----------------------------------LSgGq~qrv----~laral~~   88 (177)
T cd03222          70 ----------------------ID-----------------------------------LSGGELQRV----AIAAALLR   88 (177)
T ss_pred             ----------------------CC-----------------------------------CCHHHHHHH----HHHHHHhc
Confidence                                  00                                   999999999    99999996


Q ss_pred             cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304        351 YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ  407 (537)
Q Consensus       351 ~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i  407 (537)
                       +  |+++++|  |++++..     ...+.++.++.+.+++++ +|+.......+  +++++++..
T Consensus        89 -~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          89 -N--ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV-EHDLAVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             -C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEE-ECCHHHHHHhCCEEEEEcCCCc
Confidence             5  8999999  8898332     223344434433566666 88888776533  666665543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=1e-17  Score=173.90  Aligned_cols=216  Identities=13%  Similarity=0.061  Sum_probs=132.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----  225 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----  225 (537)
                      .++.++++.+.|....   .             .+-.++++.+.+|+++||+|+||||||||+++|+|.    ..     
T Consensus        79 ~~i~~~nls~~y~~~~---~-------------~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~----~~~~~~~  138 (329)
T PRK14257         79 NVFEIRNFNFWYMNRT---K-------------HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL----NDLIEGT  138 (329)
T ss_pred             ceEEEEeeEEEecCCC---c-------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCC
Confidence            3567788887764211   0             123456678889999999999999999999999998    54     


Q ss_pred             CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCC
Q psy16304        226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                      |+.|    .|.++| .++...+. +.    ..++..++++||++.++.. ..+.+.+...  ...... .+..      .
T Consensus       139 p~~G----~I~idG-~~i~~~~~-~~----~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~--~~~~~~-~~~~------~  199 (329)
T PRK14257        139 SHEG----EIYFLG-TNTRSKKI-SS----LELRTRIGMVFQKPTPFEMSIFDNVAYGPR--NNGIND-RKIL------E  199 (329)
T ss_pred             CCce----EEEECC-EEcccccc-ch----HhhhccEEEEecCCccCCCcHHHHHHhHHH--hcCCCh-HHHH------H
Confidence            6789    999987 54421110 11    1223679999999886532 1111110000  000000 0000      0


Q ss_pred             ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304        305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ  374 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~  374 (537)
                        ......+..+++..   .........|||||+||+    ++|++++. +  |+++++|  |++++..     ...+..
T Consensus       200 --~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl----~LARAl~~-~--p~IlLLDEPts~LD~~~~~~i~~~i~~  270 (329)
T PRK14257        200 --KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL----CIARAIAL-E--PEVLLMDEPTSALDPIATAKIEELILE  270 (329)
T ss_pred             --HHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence              00000011111110   011233678999999999    99999996 5  8999999  9998332     222333


Q ss_pred             HHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccchh
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+  +.+++++ +|+...... ++ ++++++|+++..|.+.++.
T Consensus       271 l~~--~~Tii~i-TH~l~~i~~~~Driivl~~G~i~e~g~~~~l~  312 (329)
T PRK14257        271 LKK--KYSIIIV-THSMAQAQRISDETVFFYQGWIEEAGETKTIF  312 (329)
T ss_pred             Hhc--CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            332  3567777 899888765 44 9999999999999988873

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.67  E-value=1.1e-17  Score=163.60  Aligned_cols=190  Identities=14%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.++| ..+...+..   ..+...+..+++++
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~~---~~~~~~~~~i~~~~   85 (218)
T cd03290          18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE----MQTLEG----KVHWSN-KNESEPSFE---ATRSRNRYSVAYAA   85 (218)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----eEEECC-ccccccccc---ccchhhcceEEEEc
Confidence            345677889999999999999999999999999    899999    999886 433222110   00111225689999


Q ss_pred             cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++.++.. ..+.+.+........   ....+..+ ++.  ..  ....-.|..... ...+..||+||+||+    +++
T Consensus        86 q~~~~~~~t~~~nl~~~~~~~~~~---~~~~~~~~-~l~--~~--~~~~~~~~~~~~-~~~~~~LS~G~~qrv----~la  152 (218)
T cd03290          86 QKPWLLNATVEENITFGSPFNKQR---YKAVTDAC-SLQ--PD--IDLLPFGDQTEI-GERGINLSGGQRQRI----CVA  152 (218)
T ss_pred             CCCccccccHHHHHhhcCcCCHHH---HHHHHHHh-CcH--HH--HHhCcCccccCc-ccCCCcCCHHHHHHH----HHH
Confidence            99865421 001000000000000   00000000 000  00  000001111111 223778999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHH----HHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCC
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWK----QYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCN  405 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~----~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G  405 (537)
                      ++++. +  |+++++|  |+|++..  ..+++    ..+++.+.+++++ +|+......++ ++++++|
T Consensus       153 ral~~-~--p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~-sH~~~~~~~~d~i~~l~~G  217 (218)
T cd03290         153 RALYQ-N--TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV-THKLQYLPHADWIIAMKDG  217 (218)
T ss_pred             HHHhh-C--CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEE-eCChHHHhhCCEEEEecCC
Confidence            99996 5  8999999  9999443  22333    1223334566666 78877665444 6666655

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.67  E-value=3.9e-17  Score=153.32  Aligned_cols=140  Identities=17%  Similarity=0.116  Sum_probs=96.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.+++.                   ..+++++|
T Consensus        19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~~~-------------------~~i~~~~q   71 (166)
T cd03223          19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL----WPWGSG----RIGMPEG-------------------EDLLFLPQ   71 (166)
T ss_pred             cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECCC-------------------ceEEEECC
Confidence            45677889999999999999999999999999    999999    7776541                   34778888


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.++. .+                +.+.+.      .           +        .+.+||+||+||+    +++++
T Consensus        72 ~~~~~~-~t----------------v~~nl~------~-----------~--------~~~~LS~G~~~rv----~lara  105 (166)
T cd03223          72 RPYLPL-GT----------------LREQLI------Y-----------P--------WDDVLSGGEQQRL----AFARL  105 (166)
T ss_pred             CCcccc-cc----------------HHHHhh------c-----------c--------CCCCCCHHHHHHH----HHHHH
Confidence            765210 00                111110      0           0        1467999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSC  404 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~  404 (537)
                      ++. +  |+++++|  |+|++..... ..+++++...+++++ +|+......++ ++++++
T Consensus       106 l~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiiv-sh~~~~~~~~d~i~~l~~  162 (166)
T cd03223         106 LLH-K--PKFVFLDEATSALDEESEDRLYQLLKELGITVISV-GHRPSLWKFHDRVLDLDG  162 (166)
T ss_pred             HHc-C--CCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEE-eCChhHHhhCCEEEEEcC
Confidence            996 5  8999999  9999433322 233333334566666 77766544333 555544

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PLN03130 ABC transporter C family member; Provisional

Probab=99.67  E-value=1e-17  Score=204.23  Aligned_cols=252  Identities=15%  Similarity=0.139  Sum_probs=162.0

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      |..-..|+..+...++.++.+..+++|+.+++..+.....+.++...          ....+.++++...|+...   + 
T Consensus       564 ~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~----------~~~~I~~~nvsf~y~~~~---~-  629 (1622)
T PLN03130        564 FAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEP----------GLPAISIKNGYFSWDSKA---E-  629 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccC----------CCCceEEEeeEEEccCCC---C-
Confidence            34446788899999999999999999999998754322222221110          012356667666654210   0 


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce-eeeeEEEEECCcEEEEEeecCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV-GFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~-G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                       .          ..-.++++.+++|++++|+|++|||||||++.|.|.    +.|+. |    ++.+.            
T Consensus       630 -~----------~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~GG----~I~l~------------  678 (1622)
T PLN03130        630 -R----------PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE----LPPRSDA----SVVIR------------  678 (1622)
T ss_pred             -C----------ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh----hccCCCc----eEEEc------------
Confidence             0          112356688889999999999999999999999999    99999 8    44422            


Q ss_pred             CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI  326 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l  326 (537)
                               ..++||+|++.++.. ..+++.+.-+-+.+++..+.+..   ..+..++...     -..+|..+.     
T Consensus       679 ---------~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd-----~T~IGe~G~-----  739 (1622)
T PLN03130        679 ---------GTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGD-----LTEIGERGV-----  739 (1622)
T ss_pred             ---------CeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcc-----cccccCCCC-----
Confidence                     358899999988765 44544443221222222111110   0111111110     113343322     


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEEEEEEeCCCcchhhhhh-h
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-V  399 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i  399 (537)
                        .||||||||+    ++|||++. +  +++++||  |++++...  .+.+..++.  .+.+++++ +|+......++ +
T Consensus       740 --~LSGGQKQRI----aLARAly~-~--~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlV-TH~l~~l~~aD~I  809 (1622)
T PLN03130        740 --NISGGQKQRV----SMARAVYS-N--SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLV-TNQLHFLSQVDRI  809 (1622)
T ss_pred             --CCCHHHHHHH----HHHHHHhC-C--CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEE-ECCHhHHHhCCEE
Confidence              3999999999    99999996 5  8999999  99996432  233443332  23455555 67777777666 8


Q ss_pred             hhhcCCcEEEEecccchh
Q psy16304        400 YLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       400 ~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++|++...|+.+++.
T Consensus       810 i~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        810 ILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             EEEeCCEEEEeCCHHHHH
Confidence            999999999999888774

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.67  E-value=1e-17  Score=162.14  Aligned_cols=174  Identities=17%  Similarity=0.179  Sum_probs=100.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    +|.++|                     .+++++
T Consensus        22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~----~~~~~G----~i~~~g---------------------~i~~~~   72 (204)
T cd03250          22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGE----LEKLSG----SVSVPG---------------------SIAYVS   72 (204)
T ss_pred             eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCC----eEEEcC---------------------EEEEEe
Confidence            346678889999999999999999999999999    999999    888775                     145555


Q ss_pred             cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      |++.++.. ..+.+.+......+.   ..+.+.... +.  ..  ......|+.... ......||+||+||+    +++
T Consensus        73 q~~~l~~~t~~enl~~~~~~~~~~---~~~~~~~~~-l~--~~--~~~~~~~~~~~~-~~~~~~lS~G~~qrv----~la  139 (204)
T cd03250          73 QEPWIQNGTIRENILFGKPFDEER---YEKVIKACA-LE--PD--LEILPDGDLTEI-GEKGINLSGGQKQRI----SLA  139 (204)
T ss_pred             cCchhccCcHHHHhccCCCcCHHH---HHHHHHHcC-cH--HH--HHhccCccccee-cCCCCcCCHHHHHHH----HHH
Confidence            55543321 001110000000000   000000000 00  00  000001211111 223678999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHHHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      ++++. +  |+++++|  |++++..  ..+++.+++   ....+++++ +|+......++ ++++++|+
T Consensus       140 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~-sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         140 RAVYS-D--ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV-THQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             HHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE-eCCHHHHhhCCEEEEEeCCC
Confidence            99996 5  8999999  9999443  233343322   223566666 78776665544 66666653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.66  E-value=8.5e-18  Score=189.75  Aligned_cols=250  Identities=14%  Similarity=0.016  Sum_probs=145.3

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCC-----CCc-hhHHHH-----------HHHHHHHHhhhcc
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDP-----APT-FEVCIV-----------SLLVHLMRGILMG  154 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p-~~~~~~-----------~~l~~~m~~~li~  154 (537)
                      +...++|+.++...+.+++...++.+|+.++++....+.++     ..+ .+....           ..+ + .....+.
T Consensus       376 ~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~  453 (659)
T TIGR00954       376 LLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIV-E-YQDNGIK  453 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccc-c-cCCCeEE
Confidence            44668999999999999999999999999998754332210     000 000000           000 0 0122456


Q ss_pred             cccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE
Q psy16304        155 IQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR  234 (537)
Q Consensus       155 ~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~  234 (537)
                      ++++++.|++..                 .+-.++++.+++|++++|+|+||||||||+++|+|.    +.|+.|    +
T Consensus       454 ~~nv~~~~~~~~-----------------~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl----~~~~~G----~  508 (659)
T TIGR00954       454 FENIPLVTPNGD-----------------VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL----WPVYGG----R  508 (659)
T ss_pred             EEeeEEECCCCC-----------------eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----e
Confidence            677777553211                 122345678889999999999999999999999999    899999    5


Q ss_pred             EEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeec----Ccc-cccCCcccccccCcCCcccc
Q psy16304        235 VEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMC----GVH-QVSGIPDELTSATHLPLVDF  308 (537)
Q Consensus       235 i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds----~~~-~~~~l~~~l~~~~~l~~~~~  308 (537)
                      +.+++               +    ..+++++|++.++.. ..+.+.+....    ... ..+.+.+.++..+ +...  
T Consensus       509 i~~~~---------------~----~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~--  566 (659)
T TIGR00954       509 LTKPA---------------K----GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQ-LTHI--  566 (659)
T ss_pred             EeecC---------------C----CcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcC-CHHH--
Confidence            55432               1    457888888775543 11111110000    000 0000001010000 0000  


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlV  385 (537)
                      ...   ..|++... . ....|||||+||+    ++|++++. +  |++++||  |++++..... ..+.+++.+.++++
T Consensus       567 ~~~---~~g~~~~~-~-~~~~LSgGqkQRl----~iARal~~-~--p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~  634 (659)
T TIGR00954       567 LER---EGGWSAVQ-D-WMDVLSGGEKQRI----AMARLFYH-K--PQFAILDECTSAVSVDVEGYMYRLCREFGITLFS  634 (659)
T ss_pred             Hhh---cCCccccc-c-cccCCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence            000   11111111 1 2467999999999    99999997 5  8999999  9999544332 23444444566777


Q ss_pred             EeCCCcchhhhhh-hhhhc
Q psy16304        386 SHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll~  403 (537)
                      + +|+......++ +++++
T Consensus       635 i-sH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       635 V-SHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             E-eCchHHHHhCCEEEEEe
Confidence            7 88887665544 44443

>PLN03073 ABC transporter F family; Provisional

Probab=99.65  E-value=3.9e-17  Score=185.06  Aligned_cols=173  Identities=16%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      +++|.+.+|++++|+|+||||||||+++|+|.    ..|+.|    +|.+++.                   ..+++++|
T Consensus       527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl----l~p~~G----~I~~~~~-------------------~~igyv~Q  579 (718)
T PLN03073        527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGE----LQPSSG----TVFRSAK-------------------VRMAVFSQ  579 (718)
T ss_pred             ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----eEEECCc-------------------eeEEEEec
Confidence            45678889999999999999999999999999    999999    7766541                   13566666


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      +...........             ............ .......+..+|+.+......+.+|||||+||+    +++++
T Consensus       580 ~~~~~l~~~~~~-------------~~~~~~~~~~~~-~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv----aLAra  641 (718)
T PLN03073        580 HHVDGLDLSSNP-------------LLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV----AFAKI  641 (718)
T ss_pred             cccccCCcchhH-------------HHHHHHhcCCCC-HHHHHHHHHHCCCChHHhcCCccccCHHHHHHH----HHHHH
Confidence            532100000000             000000000000 111223344566653222445889999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL  410 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~  410 (537)
                      ++. +  |++++||  |+|++...  .+.+.+ ....++++++ +||+.+...++  ++++++|+++..
T Consensus       642 L~~-~--p~lLLLDEPT~~LD~~s~~~l~~~L-~~~~gtvIiv-SHd~~~i~~~~drv~~l~~G~i~~~  705 (718)
T PLN03073        642 TFK-K--PHILLLDEPSNHLDLDAVEALIQGL-VLFQGGVLMV-SHDEHLISGSVDELWVVSEGKVTPF  705 (718)
T ss_pred             Hhc-C--CCEEEEcCCCCCCCHHHHHHHHHHH-HHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEe
Confidence            996 5  8999999  99994432  233333 3334577777 89998887654  889999998743

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.65  E-value=3.8e-17  Score=184.27  Aligned_cols=217  Identities=15%  Similarity=0.143  Sum_probs=140.3

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   ..           ..+-.++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|  
T Consensus         4 ~l~~~nl~~~y~~~~---~~-----------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G--   63 (648)
T PRK10535          4 LLELKDIRRSYPSGE---EQ-----------VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL----DKPTSG--   63 (648)
T ss_pred             EEEEeeEEEEeCCCC---CC-----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe--
Confidence            567788888775321   00           0112345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~  309 (537)
                        ++.++| .++..++.   .......+..+++++|++.+++..+..            +++......  ...-+...+.
T Consensus        64 --~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~q~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~  125 (648)
T PRK10535         64 --TYRVAG-QDVATLDA---DALAQLRREHFGFIFQRYHLLSHLTAA------------QNVEVPAVYAGLERKQRLLRA  125 (648)
T ss_pred             --EEEECC-EEcCcCCH---HHHHHHHhccEEEEeCCcccCCCCCHH------------HHHHHHHHHcCCCHHHHHHHH
Confidence              999887 44332221   122222346789999998866543320            000000000  0000001112


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v  382 (537)
                      ...+..+|+... ....+.+||+||+||+    +++++++. +  |+++++|  |+|++..     ..+++.+.+ .+.+
T Consensus       126 ~~~l~~lgl~~~-~~~~~~~LS~Gq~qrv----~LAraL~~-~--P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~t  196 (648)
T PRK10535        126 QELLQRLGLEDR-VEYQPSQLSGGQQQRV----SIARALMN-G--GQVILADEPTGALDSHSGEEVMAILHQLRD-RGHT  196 (648)
T ss_pred             HHHHHHCCChhh-hcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCE
Confidence            233445676654 3555889999999999    99999996 5  8999999  8888322     223334333 2456


Q ss_pred             EEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304        383 LLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       383 IlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++ +|+.+....++ ++++++|+++..++..+.
T Consensus       197 iliv-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~  230 (648)
T PRK10535        197 VIIV-THDPQVAAQAERVIEIRDGEIVRNPPAQEK  230 (648)
T ss_pred             EEEE-CCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence            6666 88887776555 899999999998887754

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.65  E-value=1.1e-16  Score=179.64  Aligned_cols=202  Identities=17%  Similarity=0.173  Sum_probs=128.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      +-.++++.+++|+.++|+||||||||||+++|+|.    ..|.   .|    +|.++| ..+.          ...+++.
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~----~~~~~~~~G----~i~~~g-~~~~----------~~~~~~~  100 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR----SPKGVKGSG----SVLLNG-MPID----------AKEMRAI  100 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-EECC----------HHHHhhh
Confidence            34567788899999999999999999999999998    6663   78    888887 3321          1223477


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccch-----hhhhcCCCce
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSI-----IKRILGEPII  336 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~l-----i~~LSgG~rq  336 (537)
                      +++++|+..+++..+..-.+.+.. ..+   ...   .+...+...+.+..+..+|+.+..++..     ...|||||++
T Consensus       101 i~yv~Q~~~~~~~lTV~e~l~f~~-~~~---~~~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk  173 (617)
T TIGR00955       101 SAYVQQDDLFIPTLTVREHLMFQA-HLR---MPR---RVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK  173 (617)
T ss_pred             ceeeccccccCccCcHHHHHHHHH-hcC---CCC---CCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh
Confidence            999999988665444310000000 000   000   0000000112233444666665543332     1359999999


Q ss_pred             eeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc-h-hhhhh-hhhhcCCc
Q psy16304        337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR-P-DDRCQ-VYLMSCNC  406 (537)
Q Consensus       337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~-~-~~~~~-i~ll~~G~  406 (537)
                      |+    +++++++. +  |++++||  |+|++....     .++++.+. +.+++++ +|+.. . .+..+ ++++++|+
T Consensus       174 Rv----sia~aL~~-~--p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~-~hq~~~~i~~~~D~i~ll~~G~  244 (617)
T TIGR00955       174 RL----AFASELLT-D--PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICT-IHQPSSELFELFDKIILMAEGR  244 (617)
T ss_pred             HH----HHHHHHHc-C--CCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEE-eCCCCHHHHHHhceEEEeeCCe
Confidence            99    99999996 5  8999999  999943332     23444333 3455555 77764 2 34444 88999999


Q ss_pred             EEEEecccchhhhhc
Q psy16304        407 QVYLISAKNLSNGFK  421 (537)
Q Consensus       407 ii~~g~nkdl~~~~~  421 (537)
                      ++..|...++.+.+.
T Consensus       245 ~v~~G~~~~~~~~f~  259 (617)
T TIGR00955       245 VAYLGSPDQAVPFFS  259 (617)
T ss_pred             EEEECCHHHHHHHHH
Confidence            999998887755443

>PRK13409 putative ATPase RIL; Provisional

Probab=99.64  E-value=4.5e-17  Score=181.21  Aligned_cols=170  Identities=16%  Similarity=0.089  Sum_probs=111.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||||||||+++|+|.    ..|+.|    ++.++  .                   .+++++|
T Consensus       357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl----~~p~~G----~I~~~--~-------------------~i~y~~Q  407 (590)
T PRK13409        357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV----LKPDEG----EVDPE--L-------------------KISYKPQ  407 (590)
T ss_pred             ecceEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEEe--e-------------------eEEEecc
Confidence            45667789999999999999999999999999    999999    66542  1                   2566677


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCccccccc-CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      +..+....+.                .+.+... ............+..+|+... ....+.+|||||+||+    ++|+
T Consensus       408 ~~~~~~~~tv----------------~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRv----aiAr  466 (590)
T PRK13409        408 YIKPDYDGTV----------------EDLLRSITDDLGSSYYKSEIIKPLQLERL-LDKNVKDLSGGELQRV----AIAA  466 (590)
T ss_pred             cccCCCCCcH----------------HHHHHHHhhhcChHHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHH----HHHH
Confidence            6543222111                0000000 000000011233446677643 3556899999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      +++. +  |++++||  |+|++..     ..+++.+.++.+.+++++ +||..+....+  +++++ |++...|.
T Consensus       467 aL~~-~--p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv-sHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        467 CLSR-D--ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV-DHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             HHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence            9996 5  8999999  9999322     223344444445677777 89988877644  67775 47766655

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.64  E-value=8.6e-17  Score=173.65  Aligned_cols=185  Identities=14%  Similarity=0.081  Sum_probs=113.0

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..+++|.+.+|+++||+|+||||||||+++|+|.    ..|+.|    +|.++| .........+...... ....+.+ 
T Consensus        40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL----l~P~sG----eI~I~G-~~~~i~~~~~l~~~lT-V~EnL~l-  108 (549)
T PRK13545         40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV----TMPNKG----TVDIKG-SAALIAISSGLNGQLT-GIENIEL-  108 (549)
T ss_pred             EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EeeeEEeccccCCCCc-HHHHHHh-
Confidence            3456788889999999999999999999999999    999999    898887 2211000000000000 0000000 


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                                                  ...+.....-.........+..+|+.... ...+..|||||+||+    +++
T Consensus       109 ----------------------------~~~~~~~~~~e~~e~i~elLe~lgL~~~l-d~~~~~LSGGQrQRV----aLA  155 (549)
T PRK13545        109 ----------------------------KGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVKTYSSGMKSRL----GFA  155 (549)
T ss_pred             ----------------------------hhhhcCCCHHHHHHHHHHHHHHcCChhHh-hCCcccCCHHHHHHH----HHH
Confidence                                        00000000000000011122344554433 344889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++. +  |++++||  |+|++..  ..+++.+.  +..+.+++++ +|+.......+  ++++++|++...+.+.++.
T Consensus       156 rAL~~-~--P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIV-SHdl~~i~~l~DrIivL~~GkIv~~G~~~el~  231 (549)
T PRK13545        156 ISVHI-N--PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFI-SHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV  231 (549)
T ss_pred             HHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99997 5  8999999  9999433  22333221  2224566666 89988776533  8889999999888776654


Q ss_pred             h
Q psy16304        418 N  418 (537)
Q Consensus       418 ~  418 (537)
                      .
T Consensus       232 ~  232 (549)
T PRK13545        232 D  232 (549)
T ss_pred             h
Confidence            3

>KOG0054|consensus

Probab=99.63  E-value=7.4e-17  Score=188.99  Aligned_cols=199  Identities=14%  Similarity=0.087  Sum_probs=136.0

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -+++++.+++||||||||+.|||||||++.|.+.    ..|+.|    +|.+|| +++.-+.   ..++|    .+++.+
T Consensus      1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl----~e~~~G----~I~IDg-vdI~~ig---L~dLR----srlsII 1219 (1381)
T KOG0054|consen 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL----VEPAEG----EILIDG-VDISKIG---LHDLR----SRLSII 1219 (1381)
T ss_pred             hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh----cCccCC----eEEEcC-eeccccc---HHHHH----hcCeee
Confidence            4467788999999999999999999999999999    999999    999998 6665443   35666    889999


Q ss_pred             ccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEE-EeccCccCccchhhhhcCCCceeeecccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPIL-VLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~-llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ||+|.+|..-..   +-.| -+....+++++.++...--+........+. .+...       -..||-||||-+    .
T Consensus      1220 PQdPvLFsGTvR---~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg-------G~N~SvGQRQLl----C 1285 (1381)
T KOG0054|consen 1220 PQDPVLFSGTVR---FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG-------GENFSVGQRQLL----C 1285 (1381)
T ss_pred             CCCCceecCccc---cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC-------CccCChHHHHHH----H
Confidence            999998854211   2223 111111112222211100000000000010 12111       245999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCchhhHHH-HHHHHHh-c-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLG-T-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~-~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +|||++. +  .++++||  |+..+...+ ++++-.+ + ++.+++.+ .|...+.-+++ +.+|++|+++.+++|..|.
T Consensus      1286 LARALLr-~--skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltI-AHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1286 LARALLR-K--SKILVLDEATASVDPETDALIQKTIREEFKDCTVLTI-AHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred             HHHHHhc-c--CCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEE-eeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence            9999997 4  5999999  999854443 3343333 2 35688888 99999887766 9999999999999999885


Q ss_pred             h
Q psy16304        418 N  418 (537)
Q Consensus       418 ~  418 (537)
                      +
T Consensus      1362 ~ 1362 (1381)
T KOG0054|consen 1362 S 1362 (1381)
T ss_pred             h
Confidence            3

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.62  E-value=9.9e-17  Score=163.14  Aligned_cols=184  Identities=15%  Similarity=0.209  Sum_probs=110.0

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -..+++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.++|.                     ++++
T Consensus        53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl----~~p~~G----~I~i~g~---------------------i~yv  103 (282)
T cd03291          53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE----LEPSEG----KIKHSGR---------------------ISFS  103 (282)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECCE---------------------EEEE
Confidence            4456788889999999999999999999999999    999999    8887751                     3444


Q ss_pred             ccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccc
Q psy16304        266 SQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       266 ~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +|++.++.. ..+.+.+........   ..+.+... ++.      ..+..+  +.... ....+..||+||+||+    
T Consensus       104 ~q~~~l~~~tv~enl~~~~~~~~~~---~~~~l~~~-~l~------~~l~~~~~~~~~~-~~~~~~~LSgGq~qrv----  168 (282)
T cd03291         104 SQFSWIMPGTIKENIIFGVSYDEYR---YKSVVKAC-QLE------EDITKFPEKDNTV-LGEGGITLSGGQRARI----  168 (282)
T ss_pred             eCcccccccCHHHHhhcccccCHHH---HHHHHHHh-CCH------HHHHhccccccce-ecCCCCcCCHHHHHHH----
Confidence            554433221 000000000000000   00000000 000      000000  00000 0112568999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh--cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkd  415 (537)
                      +++++++. +  |+++++|  |+|++....  +.+.+.+  ..+.+++++ +|+......++ ++++++|+++..+...+
T Consensus       169 ~lAraL~~-~--p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiii-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~  244 (282)
T cd03291         169 SLARAVYK-D--ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV-TSKMEHLKKADKILILHEGSSYFYGTFSE  244 (282)
T ss_pred             HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEE-eCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999996 5  8999999  999943332  2232221  123566666 78877765544 88999999988887766


Q ss_pred             hh
Q psy16304        416 LS  417 (537)
Q Consensus       416 l~  417 (537)
                      +.
T Consensus       245 ~~  246 (282)
T cd03291         245 LQ  246 (282)
T ss_pred             HH
Confidence            63

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.62  E-value=9.8e-17  Score=156.71  Aligned_cols=179  Identities=11%  Similarity=0.028  Sum_probs=104.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE-ECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-YGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~-i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      .++++.+.+|++++|+|+||||||||+++|+|.    ..|++|    ++. +++ ..+   .. +               
T Consensus         4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~~~sG----~i~~~~~-~~~---~~-~---------------   55 (213)
T PRK15177          4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL----DAPDEG----DFIGLRG-DAL---PL-G---------------   55 (213)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCC----CEEEecC-cee---cc-c---------------
Confidence            356788889999999999999999999999999    899999    665 444 211   11 0               


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                       +.+.+++..+.            .+++....... ..............+++... ....+..||+||+||+    +++
T Consensus        56 -~~~~l~~~ltv------------~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~lS~G~~qrv----~la  116 (213)
T PRK15177         56 -ANSFILPGLTG------------EENARMMASLY-GLDGDEFSHFCYQLTQLEQC-YTDRVSEYSVTMKTHL----AFA  116 (213)
T ss_pred             -cccccCCcCcH------------HHHHHHHHHHc-CCCHHHHHHHHHHHhChhHH-hhchHhhcCHHHHHHH----HHH
Confidence             01111111000            00000000000 00000000000112344433 3455889999999999    999


Q ss_pred             cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++++. +  |+++++|  +++++..  ..+++.+.+. .+.+++++ +|++......+  ++++++|+++..+...+.
T Consensus       117 ~al~~-~--p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        117 INLLL-P--CRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVL-THNPRLIKEHCHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             HHHhc-C--CCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEE-ECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence            99996 5  8999999  6777322  2222322211 12345666 89988776433  888999999876555444

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.61  E-value=7.2e-16  Score=141.45  Aligned_cols=122  Identities=23%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    ++.+++ .                  ..+++++|
T Consensus        18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~~-~------------------~~i~~~~~   70 (144)
T cd03221          18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGE----LEPDEG----IVTWGS-T------------------VKIGYFEQ   70 (144)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCce----EEEECC-e------------------EEEEEEcc
Confidence            45677889999999999999999999999999    999999    887765 1                  11333111


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                                                                                    ||+||+||+    +++++
T Consensus        71 --------------------------------------------------------------lS~G~~~rv----~lara   84 (144)
T cd03221          71 --------------------------------------------------------------LSGGEKMRL----ALAKL   84 (144)
T ss_pred             --------------------------------------------------------------CCHHHHHHH----HHHHH
Confidence                                                                          999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC  406 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~  406 (537)
                      ++. +  |+++++|  ++|++.... .+.+++++...+++++ +|+.+..... + ++++++|+
T Consensus        85 l~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~-th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          85 LLE-N--PNLLLLDEPTNHLDLESIEALEEALKEYPGTVILV-SHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             Hhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEE-ECCHHHHHHhCCEEEEEeCCC
Confidence            996 5  8999999  889843322 2233344334567777 8888776553 3 66666664

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.61  E-value=1.4e-16  Score=194.21  Aligned_cols=251  Identities=15%  Similarity=0.139  Sum_probs=153.9

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT  174 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~  174 (537)
                      -..|+..+...+..++....+++|+.+++..+..-.+....-..       .......+.++++...|+...   .    
T Consensus       586 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~---~----  651 (1522)
T TIGR00957       586 LRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI-------KPGEGNSITVHNATFTWARDL---P----  651 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccc-------CCCCCCcEEEEEeEEEcCCCC---C----
Confidence            44699999999999999999999999998744221000000000       000011456667766654210   0    


Q ss_pred             hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                               ..-.++++.+++|++++|+|+||||||||+++|.|.    +.|+.|    ++.++|               
T Consensus       652 ---------~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~----~~~~~G----~i~~~g---------------  699 (1522)
T TIGR00957       652 ---------PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE----MDKVEG----HVHMKG---------------  699 (1522)
T ss_pred             ---------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CccCCc----EEEECC---------------
Confidence                     123345678889999999999999999999999999    999999    777664               


Q ss_pred             hHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhhh
Q psy16304        255 RTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRI  330 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~L  330 (537)
                            .++|++|++.++.. ..+++.+....+.++++.+.+..   ..++.++..     .-..+|.       ....|
T Consensus       700 ------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g-----~~t~ig~-------~g~~L  761 (1522)
T TIGR00957       700 ------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG-----DRTEIGE-------KGVNL  761 (1522)
T ss_pred             ------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCC-----CCceecC-------CCCCC
Confidence                  26777777665432 22222211110011111000000   000000000     0001221       14569


Q ss_pred             cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh----cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG----TVSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~----~~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      ||||+||+    ++||+++. +  |++++||  |++++...  .+++.+.+    ..+.+++++ +|+......++ +++
T Consensus       762 SGGQkqRi----aLARAl~~-~--~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlv-TH~~~~l~~~D~ii~  833 (1522)
T TIGR00957       762 SGGQKQRV----SLARAVYS-N--ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV-THGISYLPQVDVIIV  833 (1522)
T ss_pred             CHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEE-eCChhhhhhCCEEEE
Confidence            99999999    99999996 5  8999999  99994433  33344432    123456666 78877776666 899


Q ss_pred             hcCCcEEEEecccchh
Q psy16304        402 MSCNCQVYLISAKNLS  417 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~  417 (537)
                      +++|++...|+..++.
T Consensus       834 l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       834 MSGGKISEMGSYQELL  849 (1522)
T ss_pred             ecCCeEEeeCCHHHHH
Confidence            9999999998877764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0066|consensus

Probab=99.60  E-value=2.3e-17  Score=169.71  Aligned_cols=208  Identities=15%  Similarity=0.116  Sum_probs=138.6

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      -++.+-.|.++|||||||-||||||+.|+...++ +.|...    .+...  ..+..-+++.....-..-..+...+-.+
T Consensus       283 A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID----vLlCE--QEvvad~t~Ai~tvl~aD~kRl~lLeee  355 (807)
T KOG0066|consen  283 ASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID----VLLCE--QEVVADSTSAIDTVLKADKKRLALLEEE  355 (807)
T ss_pred             cceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc----eEeee--eeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence            3466668999999999999999999999875433 334443    11111  1222222221110000000011110000


Q ss_pred             CCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ..+...    + .-=| +..++...+.+.+..++....+.++...+..+|++..........|||||++|+    .+|++
T Consensus       356 ~~L~~q----~-e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRv----SLARA  426 (807)
T KOG0066|consen  356 AKLMSQ----I-EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRV----SLARA  426 (807)
T ss_pred             HHHHHH----H-HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeeh----hHHHH
Confidence            000000    0 0001 223445556666666666666777777788999988887888899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      ++. .  |.++.||  |++++.-..+| ..|+.....+++++ +||..+++.+|  ++-++..++..+-+|+.+
T Consensus       427 Lfl-E--PTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIV-SHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~  496 (807)
T KOG0066|consen  427 LFL-E--PTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV-SHDQGFLDSVCTDIIHLDNQKLHYYRGNYTL  496 (807)
T ss_pred             Hhc-C--ceeeeecCCccccccceeeehhhHHhhhhheeEEE-ecccchHHHHHHHHhhhhhhhhhhhcchHHH
Confidence            986 4  8999999  99998888888 89999888889998 99999999988  777788889999999865

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.7e-16  Score=152.57  Aligned_cols=202  Identities=13%  Similarity=0.085  Sum_probs=126.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      +.+++++++|++.+|+||||||||||.+.|+|.  ..|.+|.|    +|.++| .++...+.  .++.+    ..+...|
T Consensus        21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~--p~Y~Vt~G----~I~~~G-edI~~l~~--~ERAr----~GifLaf   87 (251)
T COG0396          21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEG----EILFDG-EDILELSP--DERAR----AGIFLAF   87 (251)
T ss_pred             cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC--CCceEecc----eEEECC-cccccCCH--hHHHh----cCCEEee
Confidence            456788999999999999999999999999996  33689999    999997 55443332  23333    6677788


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchh-hhhcCCCceeeecccccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSII-KRILGEPIISLVPTVGFN  345 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li-~~LSgG~rqrvs~ti~la  345 (537)
                      |.|..++..+..-.+..-....+...  .    + ...........+..++++..--.+.+ ..||||++.|.    .+.
T Consensus        88 Q~P~ei~GV~~~~fLr~a~n~~~~~~--~----~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~----Eil  156 (251)
T COG0396          88 QYPVEIPGVTNSDFLRAAMNARRGAR--G----I-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN----EIL  156 (251)
T ss_pred             cCCccCCCeeHHHHHHHHHHhhhccc--c----c-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH----HHH
Confidence            99886655333111110000000000  0    0 00001111222334555442222223 35999999999    888


Q ss_pred             cceeccCCceEEEEEe--cCch--hhHHH---HHHHHHhcCCEEEEEEeCCCcchhhhhh---hhhhcCCcEEEEecccc
Q psy16304        346 RARVEYGNKYEVFLYD--LGGS--EDFRT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ---VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       346 ~all~~~e~p~lllLD--T~Gl--~~~~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~---i~ll~~G~ii~~g~nkd  415 (537)
                      ..++. .  |++.+||  -+|+  +..+.   ....+... +..++++ ||...-++.+.   +.+|-+|+++..|.+ +
T Consensus       157 Q~~~l-e--Pkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liI-THy~rll~~i~pD~vhvl~~GrIv~sG~~-e  230 (251)
T COG0396         157 QLLLL-E--PKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLII-THYQRLLDYIKPDKVHVLYDGRIVKSGDP-E  230 (251)
T ss_pred             HHHhc-C--CCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEE-ecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence            77775 5  8999999  6777  33333   33444444 4555566 67777777663   899999999999988 6


Q ss_pred             hhh
Q psy16304        416 LSN  418 (537)
Q Consensus       416 l~~  418 (537)
                      +..
T Consensus       231 l~~  233 (251)
T COG0396         231 LAE  233 (251)
T ss_pred             HHH
Confidence            643

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.60  E-value=1.9e-16  Score=158.91  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=103.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc--hh-hHHHH--hhhhcccc
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE--DF-RTIWK--QYLGTVSQ  267 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~--~~-r~~~~--~~i~~v~Q  267 (537)
                      +.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.+.+.+....-...|..  .. ....+  ..+++++|
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl----~~p~~G----~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~   94 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGK----LKPNLG----KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ   94 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence            679999999999999999999999999    999999    7753221110000011111  11 01111  12455566


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ....++....      +       ++.+.+   ............+..+|+.... ...+..||+||+|++    +++++
T Consensus        95 ~~~~~~~~~~------~-------~i~~~l---~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~lara  153 (255)
T cd03236          95 YVDLIPKAVK------G-------KVGELL---KKKDERGKLDELVDQLELRHVL-DRNIDQLSGGELQRV----AIAAA  153 (255)
T ss_pred             hhccCchHHH------H-------HHHHHh---chhHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHH
Confidence            5443321000      0       000000   0000011112233345665443 345789999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEE
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQV  408 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii  408 (537)
                      ++. +  |+++++|  |++++..     ...++.+.+. +.+++++ +|++..... ++ +++++ |++.
T Consensus       154 l~~-~--p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIii-SHd~~~~~~~ad~i~~l~-~~~~  217 (255)
T cd03236         154 LAR-D--ADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVV-EHDLAVLDYLSDYIHCLY-GEPG  217 (255)
T ss_pred             HHh-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-ECCHHHHHHhCCEEEEEC-CCCC
Confidence            996 5  8999999  9999433     2333444333 3456666 899887775 33 66664 4454

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.58  E-value=1.6e-15  Score=140.81  Aligned_cols=131  Identities=18%  Similarity=0.277  Sum_probs=91.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+|+||+|||||+++|+|.    +.|+.|    ++.+++ ..+..++       ...+...+++++|
T Consensus        17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~----~~~~~G----~i~~~~-~~~~~~~-------~~~~~~~i~~~~q   80 (157)
T cd00267          17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL----LKPTSG----EILIDG-KDIAKLP-------LEELRRRIGYVPQ   80 (157)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EEcccCC-------HHHHHhceEEEee
Confidence            34566789999999999999999999999999    899999    888887 3321110       0011122332111


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                                                                                    ||+||++|+    .++++
T Consensus        81 --------------------------------------------------------------lS~G~~~r~----~l~~~   94 (157)
T cd00267          81 --------------------------------------------------------------LSGGQRQRV----ALARA   94 (157)
T ss_pred             --------------------------------------------------------------CCHHHHHHH----HHHHH
Confidence                                                                          999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCC
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCN  405 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G  405 (537)
                      ++. +  |+++++|  |+|++..  ..++   ..+.+. ..+++++ +|+....... + ++.+++|
T Consensus        95 l~~-~--~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~~~~d~i~~l~~g  156 (157)
T cd00267          95 LLL-N--PDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIV-THDPELAELAADRVIVLKDG  156 (157)
T ss_pred             Hhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEeCc
Confidence            996 5  8999999  8888432  2222   333333 3566676 8998887765 3 5655554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.58  E-value=5.8e-16  Score=187.00  Aligned_cols=208  Identities=13%  Similarity=0.144  Sum_probs=126.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -.++++.+++|+.++|+||||||||||+|+|+|.......|++|    +|.++| ..+.        ......+..++++
T Consensus        77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G----~I~~~G-~~~~--------~~~~~~r~~i~yv  143 (1394)
T TIGR00956        77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG----VITYDG-ITPE--------EIKKHYRGDVVYN  143 (1394)
T ss_pred             eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee----EEEECC-EehH--------HHHhhcCceeEEe
Confidence            34567788899999999999999999999999982222257899    999887 3321        1111122458999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccc---c-CCccEEEeccCccCcc----chhhhhcCCCcee
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVD---F-RSVPILVLGLDNAGKS----SIIKRILGEPIIS  337 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~---~-~~~~L~llGl~~~gKs----~li~~LSgG~rqr  337 (537)
                      +|+..+++.++..-.+.+. ...+..  .   ....+.....   + .+..+..+|+.+...+    ..+..||||||||
T Consensus       144 ~Q~d~~~~~lTV~E~l~f~-~~~~~~--~---~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR  217 (1394)
T TIGR00956       144 AETDVHFPHLTVGETLDFA-ARCKTP--Q---NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR  217 (1394)
T ss_pred             ccccccCCCCCHHHHHHHH-HHhCCC--C---CCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence            9987766554331000000 000000  0   0000010000   0 1223445677654322    2367899999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCc-chhh-hhh-hhhhcCCcE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSG-RPDD-RCQ-VYLMSCNCQ  407 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~-~~~~-~~~-i~ll~~G~i  407 (537)
                      +    .++++++. +  |++++||  |+|++....     .++++.+..+.+++++ +|+. .... ..+ ++++++|++
T Consensus       218 v----sIA~aL~~-~--p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~-~Hq~~~~i~~l~D~v~~L~~G~i  289 (1394)
T TIGR00956       218 V----SIAEASLG-G--AKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA-IYQCSQDAYELFDKVIVLYEGYQ  289 (1394)
T ss_pred             H----HHHHHHHh-C--CCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCCCHHHHHhhceEEEEeCCeE
Confidence            9    99999996 5  8999999  999943332     3344444334455555 6764 3333 333 889999999


Q ss_pred             EEEecccchhhhh
Q psy16304        408 VYLISAKNLSNGF  420 (537)
Q Consensus       408 i~~g~nkdl~~~~  420 (537)
                      +..|...+....+
T Consensus       290 v~~G~~~~~~~yF  302 (1394)
T TIGR00956       290 IYFGPADKAKQYF  302 (1394)
T ss_pred             EEECCHHHHHHHH
Confidence            9888877765444

>PLN03140 ABC transporter G family member; Provisional

Probab=99.58  E-value=1.5e-15  Score=183.32  Aligned_cols=207  Identities=18%  Similarity=0.181  Sum_probs=127.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      +-.++++.+++|+.++|+|||||||||||++|+|.    ..|+   +|    +|.++| ..+....          .++.
T Consensus       180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~----l~~~~~~~G----~I~~nG-~~~~~~~----------~~~~  240 (1470)
T PLN03140        180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK----LDPSLKVSG----EITYNG-YRLNEFV----------PRKT  240 (1470)
T ss_pred             eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-Eechhhc----------ccce
Confidence            45567788999999999999999999999999999    7887   89    899887 4432111          1256


Q ss_pred             hhccccCCCCCCCccceeeEEeecC----cccccCCcccccccC---------cC------------CccccCCccEEEe
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCG----VHQVSGIPDELTSAT---------HL------------PLVDFRSVPILVL  316 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~----~~~~~~l~~~l~~~~---------~l------------~~~~~~~~~L~ll  316 (537)
                      +++++|+..+++.++..-.+.+...    ..+.. ....+...+         ..            +.....+..+..+
T Consensus       241 i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~-~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l  319 (1470)
T PLN03140        241 SAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD-LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL  319 (1470)
T ss_pred             eEEecccccCCCcCcHHHHHHHHHHhcCCCCccc-chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence            8999998776655433110000000    00000 000000000         00            0000012234467


Q ss_pred             ccCccCc----cchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEE
Q psy16304        317 GLDNAGK----SSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLV  385 (537)
Q Consensus       317 Gl~~~gK----s~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlV  385 (537)
                      |+.+...    +..+..+|||||+|+    .++++++. +  |++++||  |+|++....     .++++.+..+.++++
T Consensus       320 GL~~~~~t~vg~~~~rglSGGerkRV----sia~aL~~-~--p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii  392 (1470)
T PLN03140        320 GLDICKDTIVGDEMIRGISGGQKKRV----TTGEMIVG-P--TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM  392 (1470)
T ss_pred             CCccccCceeCCccccCCCcccceee----eehhhhcC-C--CcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            7765321    334788999999999    99999996 5  8999999  999943332     334444433445666


Q ss_pred             EeCCCc--chhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304        386 SHSLSG--RPDDRCQ-VYLMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       386 vdshd~--~~~~~~~-i~ll~~G~ii~~g~nkdl~~~  419 (537)
                      + +|+.  +..+..+ ++++++|+++..|...+....
T Consensus       393 s-~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~y  428 (1470)
T PLN03140        393 S-LLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF  428 (1470)
T ss_pred             E-ecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHH
Confidence            6 6654  2333333 899999999988877766543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.58  E-value=6.7e-16  Score=186.45  Aligned_cols=184  Identities=14%  Similarity=0.210  Sum_probs=120.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      +-.++++.+++|++++|+||||||||||+++|+|.    ..   |++|    +|.++| ..+   +    ..    +++.
T Consensus       778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~----~~~g~~~~G----~I~i~G-~~~---~----~~----~~~~  837 (1394)
T TIGR00956       778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER----VTTGVITGG----DRLVNG-RPL---D----SS----FQRS  837 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-EEC---C----hh----hhcc
Confidence            34567788899999999999999999999999998    65   7889    898887 433   1    12    2367


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCccccccc------CcCCc---cccCCccEEEeccCccCccchhh----
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA------THLPL---VDFRSVPILVLGLDNAGKSSIIK----  328 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~------~~l~~---~~~~~~~L~llGl~~~gKs~li~----  328 (537)
                      +++++|+..+++..+.                .+.+...      .....   ....+..+..+|+.+..++ .+.    
T Consensus       838 i~yv~Q~~~~~~~~Tv----------------~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~  900 (1394)
T TIGR00956       838 IGYVQQQDLHLPTSTV----------------RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGE  900 (1394)
T ss_pred             eeeecccccCCCCCCH----------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCC
Confidence            8999998765443332                1111100      00000   0112233445666554332 244    


Q ss_pred             hhcCCCceeeecccccccceeccCCceE-EEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchh--hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYE-VFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPD--DRCQ  398 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~-lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~--~~~~  398 (537)
                      .|||||+||+    +++++++. +  |+ +++||  |+|++....     .++++.++ +.+|+++ +|+....  ...+
T Consensus       901 ~LSgGqrqRl----~Ia~aL~~-~--P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t-~H~~~~~~~~~~D  971 (1394)
T TIGR00956       901 GLNVEQRKRL----TIGVELVA-K--PKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCT-IHQPSAILFEEFD  971 (1394)
T ss_pred             CCCHHHhhHH----HHHHHHHc-C--CCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEE-ecCCCHHHHHhcC
Confidence            6999999999    99999996 5  75 99999  999943332     23344333 3456666 7887753  3334


Q ss_pred             -hhhhcCC-cEEEEeccc
Q psy16304        399 -VYLMSCN-CQVYLISAK  414 (537)
Q Consensus       399 -i~ll~~G-~ii~~g~nk  414 (537)
                       ++++++| +++..|...
T Consensus       972 ~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       972 RLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             EEEEEcCCCEEEEECCcc
Confidence             8888887 998888764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.58  E-value=4.3e-16  Score=173.44  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE-----------ECCcEEEEEeecCCCchhh-HHH-
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-----------YGNKYEVFLYDLGGSEDFR-TIW-  258 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~-----------i~g~~~i~~~D~~G~~~~r-~~~-  258 (537)
                      .+.+|+++||+|+||||||||+++|+|.    +.|+.|    ++.           +.| .++        ..+. ... 
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~----l~p~~G----~i~~~~~~~~~~~~~~G-~~l--------~~~~~~~~~  157 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGE----LIPNLG----DYEEEPSWDEVLKRFRG-TEL--------QNYFKKLYN  157 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCc----cccCCCcHHHHHHHhCC-hHH--------HHHHHHHhc
Confidence            4679999999999999999999999999    999999    665           222 111        0110 000 


Q ss_pred             -HhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCcee
Q psy16304        259 -KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIIS  337 (537)
Q Consensus       259 -~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqr  337 (537)
                       ...+++.+|.....+....             ..+.+.+...   ....+....+..+|+.... ...+.+|||||+||
T Consensus       158 ~~~~~~~~~q~~~~~p~~~~-------------~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~-~~~~~~LSgGe~qr  220 (590)
T PRK13409        158 GEIKVVHKPQYVDLIPKVFK-------------GKVRELLKKV---DERGKLDEVVERLGLENIL-DRDISELSGGELQR  220 (590)
T ss_pred             cCcceeecccchhhhhhhhc-------------chHHHHHHhh---hHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHH
Confidence             0112333443221111000             0011111110   0111222334456776543 45589999999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC  404 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~  404 (537)
                      +    +++++++. +  |++++||  |++++....     +++.+.+  +.+++++ +|++...+..+  ++++++
T Consensus       221 v----~ia~al~~-~--p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIiv-sHd~~~l~~~~D~v~vl~~  286 (590)
T PRK13409        221 V----AIAAALLR-D--ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVV-EHDLAVLDYLADNVHIAYG  286 (590)
T ss_pred             H----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence            9    99999996 4  8999999  999943322     2234333  5667777 89998887654  666654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.56  E-value=1.4e-15  Score=144.22  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=91.7

Q ss_pred             ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      +.+-.++++.+.+|++++|+|||||||||||+++.+        +.|    ++.+.+..          ..+.   +..+
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~--------~~G----~v~~~~~~----------~~~~---~~~~   62 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--------ASG----KARLISFL----------PKFS---RNKL   62 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh--------cCC----cEEECCcc----------cccc---cccE
Confidence            334566788899999999999999999999999853        467    55554310          0000   0112


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      .+++|                             .+             .+..+|+........+.+||+||++|+    
T Consensus        63 ~~~~q-----------------------------~~-------------~l~~~~L~~~~~~~~~~~LSgGq~qrl----   96 (176)
T cd03238          63 IFIDQ-----------------------------LQ-------------FLIDVGLGYLTLGQKLSTLSGGELQRV----   96 (176)
T ss_pred             EEEhH-----------------------------HH-------------HHHHcCCCccccCCCcCcCCHHHHHHH----
Confidence            23222                             00             111233322112334778999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC  406 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~  406 (537)
                      +++++++..++ |+++++|  |++++..     ...+..+.+ .+.+++++ +|+......++ ++++++|.
T Consensus        97 ~laral~~~~~-p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIiv-SH~~~~~~~~d~i~~l~~g~  165 (176)
T cd03238          97 KLASELFSEPP-GTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILI-EHNLDVLSSADWIIDFGPGS  165 (176)
T ss_pred             HHHHHHhhCCC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHhCCEEEEECCCC
Confidence            99999998533 7999999  8888322     222333332 34556666 77776655444 66665544

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=2.1e-15  Score=138.50  Aligned_cols=206  Identities=15%  Similarity=0.102  Sum_probs=126.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.|.|.-..           ..+.++....+++|.++.||+++|=||+|+|||||+++|-+.    |.|++|  
T Consensus         4 ~l~v~~~~KtFtlH~-----------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN----Y~~d~G--   66 (235)
T COG4778           4 PLNVSNVSKTFTLHQ-----------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN----YLPDEG--   66 (235)
T ss_pred             eeeeecchhheEeee-----------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc----cCCCCc--
Confidence            345677777543221           112235556678899999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCc--hhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSE--DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVD  307 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~--~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~  307 (537)
                        +|.+...-  ..+|....+  ..-.+.++.+|||+|.....+.....     |       -+.+-+-..+  .-....
T Consensus        67 --~I~v~H~g--~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL-----d-------VvaePll~~gv~~~~a~~  130 (235)
T COG4778          67 --QILVRHEG--EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL-----D-------VVAEPLLARGVPREVARA  130 (235)
T ss_pred             --eEEEEeCc--chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH-----H-------HHHhHHHHcCCCHHHHHH
Confidence              88775311  122333322  22345568899999986644432220     0       0111110000  000111


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCE
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQ  381 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~  381 (537)
                      ++...+..+.++....+-.+.+||||++||+    .+++..+. +  .++++||  |+.++..  ....+.+.  +...+
T Consensus       131 ~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV----NIaRgfiv-d--~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga  203 (235)
T COG4778         131 KAADLLTRLNLPERLWSLAPATFSGGEQQRV----NIARGFIV-D--YPILLLDEPTASLDATNRAVVVELIREAKARGA  203 (235)
T ss_pred             HHHHHHHHcCCCHHHhcCCCcccCCchheeh----hhhhhhhc-c--CceEEecCCcccccccchHHHHHHHHHHHhcCc
Confidence            2233444566665555555788999999999    99999997 6  7999999  8888332  22223222  22233


Q ss_pred             EEEEEeCCCcchhhhhh
Q psy16304        382 TLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~  398 (537)
                      +++=+ -||.+--+.++
T Consensus       204 AlvGI-FHDeevre~va  219 (235)
T COG4778         204 ALVGI-FHDEEVREAVA  219 (235)
T ss_pred             eEEEe-eccHHHHHHHh
Confidence            44444 68877666554

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.54  E-value=3.6e-14  Score=148.84  Aligned_cols=217  Identities=22%  Similarity=0.297  Sum_probs=149.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC---cEEEEEeecCCCchhh-HHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN---KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g---~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|||.+++|||||+|.|+|.+.+.+.-+.|+|++.+.-.+   +..+.++||+|..... ..+...+..   .....
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~---Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIRE---QALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHH---HHHHH
Confidence            5799999999999999999999998999999999998765331   3789999999987432 111121211   11112


Q ss_pred             CCccceeeEEeecCc-----cc-------------------cc----------------------------CCcccc---
Q psy16304        273 PDSRTCQVYLIMCGV-----HQ-------------------VS----------------------------GIPDEL---  297 (537)
Q Consensus       273 ~~~~~~il~v~Ds~~-----~~-------------------~~----------------------------~l~~~l---  297 (537)
                      ..+++++++++|...     +.                   .+                            .+.+.+   
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v  160 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV  160 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHH
Confidence            345899999999211     10                   00                            000001   


Q ss_pred             -ccc-CcCCcccc---CCccEEEeccCccCccchhhhhcCCCceeeecccccccceecc----CCceEEEEEecCchhhH
Q psy16304        298 -TSA-THLPLVDF---RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF  368 (537)
Q Consensus       298 -~~~-~~l~~~~~---~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~----~e~p~lllLDT~Gl~~~  368 (537)
                       ..+ ...+....   ....+.++|.+++||+++++.|.|.++.-+++..|++++.+..    ++ -.+.++||+|++..
T Consensus       161 ~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-~~~~liDTAGiRrk  239 (444)
T COG1160         161 LELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-RKYVLIDTAGIRRK  239 (444)
T ss_pred             HhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-eEEEEEECCCCCcc
Confidence             111 00001111   2356779999999999999999999999999999999988742    23 67889999999333


Q ss_pred             HHHH-----------HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        369 RTIW-----------KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       369 ~~l~-----------~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      ..+.           ..-.+.++.+++|+|.++..+..+..  -.+.+.|+.+.+.-|| |+.
T Consensus       240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~  302 (444)
T COG1160         240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV  302 (444)
T ss_pred             cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence            2221           12335678999999999988777766  5677889888888888 874

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.54  E-value=6.1e-16  Score=158.61  Aligned_cols=228  Identities=13%  Similarity=0.092  Sum_probs=149.0

Q ss_pred             HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCc
Q psy16304        149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPT  227 (537)
Q Consensus       149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt  227 (537)
                      .+.++.++|++..|+...-              .+.+.+.++|.+.+||.++|||.+|||||-..+.+.+.-. .....-
T Consensus         3 ~~~lL~v~nLsV~f~~~~~--------------~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~   68 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGG--------------TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHP   68 (534)
T ss_pred             CCcceeeeccEEEEecCCc--------------ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCc
Confidence            3567778888886653321              1446677889999999999999999999999999998611 111223


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--  305 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--  305 (537)
                      +|    .+.++| .++--.+-   ...+.+....|+++||++.-..+-...+          ..++.+.+.+..++..  
T Consensus        69 sg----~i~f~G-~dll~~se---~~lr~iRG~~I~MIFQEPMtSLNPl~tI----------g~Qi~E~l~~Hrg~~~~~  130 (534)
T COG4172          69 SG----SILFDG-EDLLAASE---RQLRGVRGNKIGMIFQEPMTSLNPLHTI----------GKQLAEVLRLHRGLSRAA  130 (534)
T ss_pred             cc----eeEEcC-hhhhcCCH---HHHhhhcccceEEEecccccccCcHhHH----------HHHHHHHHHHHhcccHHH
Confidence            45    677766 33322111   2445566678999999987211100000          1112222322222221  


Q ss_pred             -cccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304        306 -VDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY  375 (537)
Q Consensus       306 -~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~  375 (537)
                       ..+.-..+..+|+++..  -.+++++|||||+||+    -+|.|++.  + |+++|-|  |..+     ..+..+++++
T Consensus       131 Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV----MIAMALan--~-P~lLIADEPTTALDVtvQaQIL~Ll~~L  203 (534)
T COG4172         131 ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV----MIAMALAN--E-PDLLIADEPTTALDVTVQAQILDLLKEL  203 (534)
T ss_pred             HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH----HHHHHHcC--C-CCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence             12233445577876554  3567899999999999    88999885  4 8999999  7777     4445556666


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      -++.+-.++.+ +||..-.....  +.+|.+|+++..+..+.+
T Consensus       204 q~~~gMa~lfI-THDL~iVr~~ADrV~VM~~G~ivE~~~t~~l  245 (534)
T COG4172         204 QAELGMAILFI-THDLGIVRKFADRVYVMQHGEIVETGTTETL  245 (534)
T ss_pred             HHHhCcEEEEE-eccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence            66666666666 78887665543  999999999999988776

>KOG0061|consensus

Probab=99.53  E-value=5.4e-15  Score=165.11  Aligned_cols=195  Identities=15%  Similarity=0.157  Sum_probs=132.9

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-++++...++|+..|++||+|||||||+++|+|....+ ..+.|    +|.++| .          ...+..++...+|
T Consensus        45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-~~~~G----~ilvNG-~----------~~~~~~~~~~s~y  108 (613)
T KOG0061|consen   45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG-LKLSG----EILLNG-R----------PRDSRSFRKISGY  108 (613)
T ss_pred             eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC-CcceE----EEEECC-c----------cCchhhhhheeEE
Confidence            344566778899999999999999999999999981111 25788    888887 1          2334566688999


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---------CccccCCccEEEeccCccCccchh-----hhh
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL---------PLVDFRSVPILVLGLDNAGKSSII-----KRI  330 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l---------~~~~~~~~~L~llGl~~~gKs~li-----~~L  330 (537)
                      |.|+..+++.++.                +|.+.....+         +...+.+..+..+|+....++. +     +.+
T Consensus       109 V~QdD~l~~~LTV----------------~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~-ig~~~~rgi  171 (613)
T KOG0061|consen  109 VQQDDVLLPTLTV----------------RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTL-IGNPGIRGL  171 (613)
T ss_pred             EcccccccccccH----------------HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccce-ecCCCCCcc
Confidence            9999887776555                1111111111         1112334445566776555333 4     359


Q ss_pred             cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc--hhhhhh-hh
Q psy16304        331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR--PDDRCQ-VY  400 (537)
Q Consensus       331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~--~~~~~~-i~  400 (537)
                      |||||+|+    .++..+++ +  |.++++|  |+|++....     .++++.+++.++|+.  .|.+.  -+...+ +.
T Consensus       172 SGGErkRv----sia~Ell~-~--P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t--IHQPss~lf~lFD~l~  242 (613)
T KOG0061|consen  172 SGGERKRV----SIALELLT-D--PSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT--IHQPSSELFELFDKLL  242 (613)
T ss_pred             ccchhhHH----HHHHHHHc-C--CCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE--EeCCcHHHHHHHhHhh
Confidence            99999999    99999997 5  8999999  999965544     446666664444444  56554  333344 89


Q ss_pred             hhcCCcEEEEecccchhhhhc
Q psy16304        401 LMSCNCQVYLISAKNLSNGFK  421 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~~~~~  421 (537)
                      ++..|+++..|.+++...-+.
T Consensus       243 lLs~G~~vy~G~~~~~~~ff~  263 (613)
T KOG0061|consen  243 LLSEGEVVYSGSPRELLEFFS  263 (613)
T ss_pred             hhcCCcEEEecCHHHHHHHHH
Confidence            999999999999987654443

>KOG0054|consensus

Probab=99.52  E-value=3.1e-15  Score=175.58  Aligned_cols=251  Identities=16%  Similarity=0.188  Sum_probs=166.0

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA  172 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~  172 (537)
                      -..|+..+...+..+.+..-+++|+..|+..+-.-.++.+  +-+-          .+..+.+.+....+.+.    ++.
T Consensus       469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~----------~~~~i~i~~~sfsW~~~----~~~  534 (1381)
T KOG0054|consen  469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA----------GENAIEIKNGSFSWDSE----SPE  534 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC----------CCceEEEeeeeEecCCC----CCc
Confidence            3467777888888888999999999999886543332221  1001          12334444444433321    111


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +           .-.++++.+++|+.++++|+-||||||||..|.|+    ....+|    .+.+.|             
T Consensus       535 ~-----------tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE----m~~~sG----~v~v~g-------------  582 (1381)
T KOG0054|consen  535 P-----------TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE----MPKLSG----SVAVNG-------------  582 (1381)
T ss_pred             c-----------cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC----cccccc----eEEEcC-------------
Confidence            1           12355678889999999999999999999999999    999999    888877             


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhc
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRIL  331 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LS  331 (537)
                              .++|++|.+.++.. ..+++++.-+-++++|+.+-+.-.....++..  ..--...+|..+..       ||
T Consensus       583 --------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~L--p~GD~TeIGErGin-------LS  645 (1381)
T KOG0054|consen  583 --------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEIL--PFGDLTEIGERGIN-------LS  645 (1381)
T ss_pred             --------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhc--CCCCcceecCCccC-------Cc
Confidence                    17788898887766 66777776665555544332211111111110  01112256655544       99


Q ss_pred             CCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc---CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT---VSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~---~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      ||||||+    ++|||+.. +  .++-+||  .+.++..  +.+.++..+.   .++.|+|  +|....+..++ +++|+
T Consensus       646 GGQKqRI----sLARAVY~-~--adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILV--THql~~L~~ad~Iivl~  716 (1381)
T KOG0054|consen  646 GGQKQRI----SLARAVYQ-D--ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILV--THQLQFLPHADQIIVLK  716 (1381)
T ss_pred             HhHHHHH----HHHHHHhc-c--CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEE--eCchhhhhhCCEEEEec
Confidence            9999999    99999997 4  6899999  5555332  2233444432   2345555  56778888777 99999


Q ss_pred             CCcEEEEecccchh
Q psy16304        404 CNCQVYLISAKNLS  417 (537)
Q Consensus       404 ~G~ii~~g~nkdl~  417 (537)
                      +|++...|+.+++.
T Consensus       717 ~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  717 DGKIVESGTYEELL  730 (1381)
T ss_pred             CCeEecccCHHHHH
Confidence            99999999988875

>KOG0927|consensus

Probab=99.51  E-value=4.4e-15  Score=157.11  Aligned_cols=178  Identities=15%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      +++|.+..+.++++||||||||||||++++|.    +.|+.|    .+.-.....+..+.+            ..+.  |
T Consensus       408 ~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd----l~p~~G----~vs~~~H~~~~~y~Q------------h~~e--~  465 (614)
T KOG0927|consen  408 KLNFGIDLDSRVALVGPNGAGKSTLLKLITGD----LQPTIG----MVSRHSHNKLPRYNQ------------HLAE--Q  465 (614)
T ss_pred             hhhcccCcccceeEecCCCCchhhhHHHHhhc----cccccc----cccccccccchhhhh------------hhHh--h
Confidence            44567788999999999999999999999999    999999    554332122211111            0110  0


Q ss_pred             CCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                                   .-+| +.      +...+..+............+-.+|+.+...+..+.+||+|++.||    .+++
T Consensus       466 -------------ldl~~s~------le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rV----lFa~  522 (614)
T KOG0927|consen  466 -------------LDLDKSS------LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRV----LFAR  522 (614)
T ss_pred             -------------cCcchhH------HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhH----HHHH
Confidence                         0000 00      0000111111001111223455788998888999999999999999    9999


Q ss_pred             ceeccCCceEEEEEe--cCchh-hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSE-DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~-~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ..+. .  |.+++||  |+|++ .....+.+++++..|.++++ +||+.....+.  +|+.+++.+....+..
T Consensus       523 l~~k-q--P~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v-SHDfrlI~qVaeEi~~c~~~~~~~~~G~i  591 (614)
T KOG0927|consen  523 LAVK-Q--PHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV-SHDFRLISQVAEEIWVCENGTVTKWDGDI  591 (614)
T ss_pred             HHhc-C--CcEEEecCCCcCCCchhHHHHHHHHhccCCceeee-echhhHHHHHHHHhHhhccCceeecCccH
Confidence            9886 4  7999999  99994 44556677888888888888 89999888776  8999998887765544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.51  E-value=4.9e-15  Score=178.83  Aligned_cols=189  Identities=14%  Similarity=0.164  Sum_probs=118.8

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      +-.++++.+++|+.++|+||||||||||+++|+|.    ..  ++.|    ++.++| ...     .     ....++.+
T Consensus       895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~----~~~g~~~G----~I~inG-~~~-----~-----~~~~~~~i  955 (1470)
T PLN03140        895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEG----DIRISG-FPK-----K-----QETFARIS  955 (1470)
T ss_pred             EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC----CCCCcccc----eEEECC-ccC-----C-----hHHhhhhe
Confidence            44567888999999999999999999999999998    44  3678    777776 221     0     01223568


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCc---cccCCccEEEeccCccCccch----hhhhcCC
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPL---VDFRSVPILVLGLDNAGKSSI----IKRILGE  333 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~---~~~~~~~L~llGl~~~gKs~l----i~~LSgG  333 (537)
                      ++++|+..+++..+..            +++...  +..-.....   ....+..+..+|+.+..++..    +..||||
T Consensus       956 gyv~Q~d~~~~~lTV~------------E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140        956 GYCEQNDIHSPQVTVR------------ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred             EEEccccccCCCCcHH------------HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence            9999997765543320            000000  000000000   011223344566654432221    3579999


Q ss_pred             CceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcch--hhhhh-hhhhc
Q psy16304        334 PIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRP--DDRCQ-VYLMS  403 (537)
Q Consensus       334 ~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~--~~~~~-i~ll~  403 (537)
                      |+||+    .++++++. +  |++++||  |+|++...     ..++++.+. +.+|+++ +|+...  ++..+ +++++
T Consensus      1024 erkRv----sIa~aL~~-~--P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t-~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140       1024 QRKRL----TIAVELVA-N--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT-IHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred             HHHHH----HHHHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCCCHHHHHhCCEEEEEc
Confidence            99999    99999997 5  8999999  99994332     233444333 3456666 788763  33344 78888


Q ss_pred             C-CcEEEEecc
Q psy16304        404 C-NCQVYLISA  413 (537)
Q Consensus       404 ~-G~ii~~g~n  413 (537)
                      + |+++..|..
T Consensus      1095 ~gG~~v~~G~~ 1105 (1470)
T PLN03140       1095 RGGQVIYSGPL 1105 (1470)
T ss_pred             CCCEEEEECCc
Confidence            5 898887765

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.51  E-value=8.5e-15  Score=149.76  Aligned_cols=182  Identities=15%  Similarity=0.090  Sum_probs=115.4

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +++++++||.|-|+|.||||||||++.|+|.    +.|++|    +|.++|    ..+|-...+++|    ..++-||.+
T Consensus       342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL----~~PqsG----~I~ldg----~pV~~e~ledYR----~LfSavFsD  405 (546)
T COG4615         342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGL----YQPQSG----EILLDG----KPVSAEQLEDYR----KLFSAVFSD  405 (546)
T ss_pred             eeeEEecCcEEEEECCCCCcHHHHHHHHhcc----cCCCCC----ceeECC----ccCCCCCHHHHH----HHHHHHhhh
Confidence            3567889999999999999999999999999    999999    999998    344444445666    666677777


Q ss_pred             CCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304        269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR  348 (537)
Q Consensus       269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al  348 (537)
                      ..+|......         +.....+..-.|+..++...    +..+-| .+.   + .-.||.||+.|+    ++-.++
T Consensus       406 yhLF~~ll~~---------e~~as~q~i~~~LqrLel~~----ktsl~d-~~f---s-~~kLStGQkKRl----All~Al  463 (546)
T COG4615         406 YHLFDQLLGP---------EGKASPQLIEKWLQRLELAH----KTSLND-GRF---S-NLKLSTGQKKRL----ALLLAL  463 (546)
T ss_pred             HhhhHhhhCC---------ccCCChHHHHHHHHHHHHhh----hhcccC-Ccc---c-ccccccchHHHH----HHHHHH
Confidence            7766443321         00000011011221111111    011111 111   1 346999999999    888888


Q ss_pred             eccCCceEEEEEe--cCchh-hHHHHH-H---HHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304        349 VEYGNKYEVFLYD--LGGSE-DFRTIW-K---QYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS  412 (537)
Q Consensus       349 l~~~e~p~lllLD--T~Gl~-~~~~l~-~---~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~  412 (537)
                      +. +  -+++.+|  .+-++ .++... .   -.+++.+.+|+++ +||..-+.+.+ ...+++|++....+
T Consensus       464 lE-e--R~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI-sHDd~YF~~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         464 LE-E--RDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI-SHDDHYFIHADRLLEMRNGQLSELTG  531 (546)
T ss_pred             Hh-h--CCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE-ecCchhhhhHHHHHHHhcCceeeccc
Confidence            85 3  5899999  55552 222211 2   2234445577778 78888888777 77889999876544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.51  E-value=4.4e-13  Score=146.08  Aligned_cols=209  Identities=20%  Similarity=0.258  Sum_probs=134.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE----ECCcEEEEEeecCCCchh--------hHHHHhhhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF--------RTIWKQYLG  263 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~----i~g~~~i~~~D~~G~~~~--------r~~~~~~i~  263 (537)
                      -.+|+|||++|||||||++.|+|...+...++.|+|++.+.    +++ ..+.+||++|+...        ...+...+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            35799999999999999999999876666778887765544    344 78999999997621        111222222


Q ss_pred             ccccCCCCCCCccceeeEEee-cCccc---------------------------------------------------cc
Q psy16304        264 TVSQTPLGRPDSRTCQVYLIM-CGVHQ---------------------------------------------------VS  291 (537)
Q Consensus       264 ~v~Q~~~l~~~~~~~il~v~D-s~~~~---------------------------------------------------~~  291 (537)
                      .           ++++++|+| ++...                                                   ..
T Consensus       117 ~-----------aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        117 T-----------ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGR  185 (472)
T ss_pred             h-----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCC
Confidence            2           677777777 22100                                                   00


Q ss_pred             CCccccccc-CcCCc---c---ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEEE
Q psy16304        292 GIPDELTSA-THLPL---V---DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLY  360 (537)
Q Consensus       292 ~l~~~l~~~-~~l~~---~---~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lllL  360 (537)
                      ++.+.+.++ ..+..   .   ......+.++|.+++||+++++.|.++++..+++..++++..    +..++ .++.+|
T Consensus       186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-~~~~l~  264 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-KTWRFV  264 (472)
T ss_pred             CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-EEEEEE
Confidence            000000000 00000   0   011245779999999999999999998876666665655533    33344 678899


Q ss_pred             ecCchh----------hHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        361 DLGGSE----------DFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       361 DT~Gl~----------~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      ||+|+.          .+..+. ..+++.++++++|+|.++..+.....  ..+.+.|.++....|| |+.
T Consensus       265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~  335 (472)
T PRK03003        265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV  335 (472)
T ss_pred             ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            999962          222222 23567889999999998877666555  3344578888888888 773

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.50  E-value=5.8e-15  Score=179.66  Aligned_cols=184  Identities=16%  Similarity=0.208  Sum_probs=115.9

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.++++.+++|+.++|+||||||||||+++|.|.    +.|+.|    +|.++|                     .++|
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~----~~~~~G----~i~~~g---------------------~iay  491 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE----LEPSEG----KIKHSG---------------------RISF  491 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC---------------------EEEE
Confidence            34567888999999999999999999999999999    999999    777765                     1677


Q ss_pred             cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEE--eccC-ccCccchhhhhcCCCceeeec
Q psy16304        265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLD-NAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~-~~gKs~li~~LSgG~rqrvs~  340 (537)
                      ++|++.++.. ..+++.+...-+.+++..+   +... .+      ...+..  .|.. ..+ . ....|||||+||+  
T Consensus       492 v~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~---~~~~-~L------~~~l~~l~~g~~t~vg-~-~g~~LSgGqkqRi--  557 (1490)
T TIGR01271       492 SPQTSWIMPGTIKDNIIFGLSYDEYRYTSV---IKAC-QL------EEDIALFPEKDKTVLG-E-GGITLSGGQRARI--  557 (1490)
T ss_pred             EeCCCccCCccHHHHHHhccccchHHHHHH---HHHH-hH------HHHHHhcccccccccc-C-cCCCcCHHHHHHH--
Confidence            7777765542 1122221111000000000   0000 00      000001  1110 011 1 1456999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA  413 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n  413 (537)
                        ++|++++. +  |++++||  +++++..  ..+++.++.  ..+.+++++ +|+......++ ++++++|+++..|+.
T Consensus       558 --~lARAl~~-~--~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilv-tH~~~~~~~ad~ii~l~~g~i~~~g~~  631 (1490)
T TIGR01271       558 --SLARAVYK-D--ADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV-TSKLEHLKKADKILLLHEGVCYFYGTF  631 (1490)
T ss_pred             --HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE-eCChHHHHhCCEEEEEECCEEEEEcCH
Confidence              99999996 5  8999999  9998433  233333221  123455666 67777766655 899999999998887


Q ss_pred             cchh
Q psy16304        414 KNLS  417 (537)
Q Consensus       414 kdl~  417 (537)
                      .++.
T Consensus       632 ~~l~  635 (1490)
T TIGR01271       632 SELQ  635 (1490)
T ss_pred             HHHH
Confidence            7764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.50  E-value=4.3e-14  Score=130.49  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=111.2

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +|..+..|+.+-+|||||||||||+..++|.     .|-+|    +|.++| ..+.-|......       +.-.|+.|.
T Consensus        18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm-----~~~sG----si~~~G-~~l~~~~~~eLA-------rhRAYLsQq   80 (248)
T COG4138          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----TSGSG----SIQFAG-QPLEAWSATELA-------RHRAYLSQQ   80 (248)
T ss_pred             cccccccceEEEEECCCCccHHHHHHHHhCC-----CCCCc----eEEECC-cchhHHhHhHHH-------HHHHHHhhc
Confidence            3456778999999999999999999999996     78899    899887 666555552222       334555554


Q ss_pred             CCCCCCccceeeEEeecCcccccCCcccccccCcCCc-cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      .....     .+-|           ...+....--.. ..........+++++.. .+.+++||||+-|||    -+|..
T Consensus        81 q~p~f-----~mpV-----------~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL-~Rs~~qLSGGEWQRV----RLAav  139 (248)
T COG4138          81 QTPPF-----AMPV-----------WHYLTLHQPDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRV----RLAAV  139 (248)
T ss_pred             cCCcc-----hhhh-----------hhhhhhcCchHHHHHHHHHHHhhhcccchh-hhhhhhcCcccceee----EEeEE
Confidence            33110     0001           111100000000 00001112245555544 333899999998888    55555


Q ss_pred             eeccC-C---ceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcc-hhhhhh-hhhhcCCcEEEEeccc
Q psy16304        348 RVEYG-N---KYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGR-PDDRCQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       348 ll~~~-e---~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~-~~~~~~-i~ll~~G~ii~~g~nk  414 (537)
                      .+... +   +-++++||  .++++-.     ..++..+... ..+|++. +||.. +....+ +|++..|+++..|..+
T Consensus       140 ~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims-~HDLNhTLrhA~~~wLL~rG~l~~~G~~~  217 (248)
T COG4138         140 VLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMS-SHDLNHTLRHAHRAWLLKRGKLLASGRRE  217 (248)
T ss_pred             EEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEe-ccchhhHHHHHHHHHHHhcCeEEeecchh
Confidence            44322 1   25889999  7777322     2233444433 2344444 88875 444555 9999999999998877


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      +.
T Consensus       218 eV  219 (248)
T COG4138         218 EV  219 (248)
T ss_pred             hh
Confidence            65

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.50  E-value=4.7e-16  Score=140.42  Aligned_cols=128  Identities=20%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+|+||+|||||+++|+|.    ..|+.|    .+.+++ ..+..       ......+..+++++|
T Consensus         3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~----~~~~~G----~i~~~~-~~~~~-------~~~~~~~~~i~~~~~   66 (137)
T PF00005_consen    3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL----LPPDSG----SILING-KDISD-------IDIEELRRRIGYVPQ   66 (137)
T ss_dssp             EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS----SHESEE----EEEETT-EEGTT-------SHHHHHHHTEEEEES
T ss_pred             ceEEEEcCCCEEEEEccCCCccccceeeeccc----cccccc----cccccc-ccccc-------ccccccccccccccc
Confidence            35667789999999999999999999999999    999999    888886 33321       112344578999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCcc---chhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKS---SIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs---~li~~LSgG~rqrvs~ti~l  344 (537)
                      +..++...+.                .+.       ....+....+..+++......   .....||+||++|+    ++
T Consensus        67 ~~~~~~~~tv----------------~~~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl----~l  119 (137)
T PF00005_consen   67 DPQLFPGLTV----------------REN-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL----AL  119 (137)
T ss_dssp             SHCHHTTSBH----------------HHH-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH----HH
T ss_pred             cccccccccc----------------ccc-------cccccccccccccccccccccccccccchhhHHHHHHH----HH
Confidence            8664433221                000       000001111112222221111   11388999999999    99


Q ss_pred             ccceeccCCceEEEEEe
Q psy16304        345 NRARVEYGNKYEVFLYD  361 (537)
Q Consensus       345 a~all~~~e~p~lllLD  361 (537)
                      +++++. +  |++++||
T Consensus       120 a~al~~-~--~~llllD  133 (137)
T PF00005_consen  120 ARALLK-N--PKLLLLD  133 (137)
T ss_dssp             HHHHHT-T--SSEEEEE
T ss_pred             HHHHHc-C--CCEEEEe
Confidence            999986 4  8999999

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.46  E-value=1.2e-14  Score=143.35  Aligned_cols=92  Identities=13%  Similarity=0.004  Sum_probs=60.8

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlV  385 (537)
                      +..+|+........+.+|||||+||+    +++++++..++ |+++++|  |+|++.     +...+..+.+. +.++++
T Consensus       121 l~~~~l~~~~~~~~~~~LSgG~~qrv----~laral~~~p~-~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~  194 (226)
T cd03270         121 LVDVGLGYLTLSRSAPTLSGGEAQRI----RLATQIGSGLT-GVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLV  194 (226)
T ss_pred             HHHCCCCcccccCccCcCCHHHHHHH----HHHHHHHhCCC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            33556654222445889999999999    99999996221 3699999  888832     22233343333 445666


Q ss_pred             EeCCCcchhhhhh-hhhh------cCCcEEEEe
Q psy16304        386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLI  411 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll------~~G~ii~~g  411 (537)
                      + +|+.+....++ ++++      ++|+++..|
T Consensus       195 i-tH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         195 V-EHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             E-EeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            6 78877665444 8888      788887653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.44  E-value=1.6e-12  Score=139.90  Aligned_cols=207  Identities=22%  Similarity=0.328  Sum_probs=129.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh--------hHHHHhhhhcc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF--------RTIWKQYLGTV  265 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~--------r~~~~~~i~~v  265 (537)
                      +|+|||++|+|||||++.|+|.+.+...+..|+|++    .+.+++ ..+.+||++|....        .......+.  
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~--   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-REFILIDTGGIEEDDDGLDKQIREQAEIAIE--   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-eEEEEEECCCCCCcchhHHHHHHHHHHHHHh--
Confidence            489999999999999999999866556667776654    344554 88999999997422        111111222  


Q ss_pred             ccCCCCCCCccceeeEEee-cCccc-----------------------cc-----C-----------------------C
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS-----G-----------------------I  293 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~-----~-----------------------l  293 (537)
                               .++.+++++| .+...                       .+     .                       +
T Consensus        78 ---------~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        78 ---------EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             ---------hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCCh
Confidence                     2667777777 21100                       00     0                       0


Q ss_pred             ccccccc-CcCCcc------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEEEec
Q psy16304        294 PDELTSA-THLPLV------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDL  362 (537)
Q Consensus       294 ~~~l~~~-~~l~~~------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lllLDT  362 (537)
                      .+.++.+ ..+...      ......+.++|.+++||+++++.|.+..+..+.+..++++..    +..++ ..+.+|||
T Consensus       149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~liDT  227 (429)
T TIGR03594       149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-KKYLLIDT  227 (429)
T ss_pred             HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-cEEEEEEC
Confidence            0000000 000000      011235779999999999999999998876666555554432    22244 68899999


Q ss_pred             CchhhHHHH----------H-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        363 GGSEDFRTI----------W-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       363 ~Gl~~~~~l----------~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +|+......          . ..+++.++++++|+|..+..+.....  ..+.+.|..+....|| |+.
T Consensus       228 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       228 AGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV  296 (429)
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence            997322111          1 24567889999999988876665544  3344567888888888 774

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PTZ00243 ABC transporter; Provisional

Probab=99.44  E-value=1.7e-14  Score=175.91  Aligned_cols=185  Identities=16%  Similarity=0.175  Sum_probs=116.6

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.++++.+.+|++++|+|+||||||||+++|.|.    +.|+.|    ++.+.                     ..+++
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~----~~~~~G----~i~~~---------------------~~i~y  725 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ----FEISEG----RVWAE---------------------RSIAY  725 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEEC---------------------CeEEE
Confidence            34467888999999999999999999999999999    999999    55432                     24788


Q ss_pred             cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecc
Q psy16304        265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++|++.++.. ..+.+.+....+.+++..+   +..       ......+..+  |+...- ......|||||+||+   
T Consensus       726 v~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~---~~~-------~~l~~~l~~l~~g~~t~i-~~~g~~LSGGQkqRv---  791 (1560)
T PTZ00243        726 VPQQAWIMNATVRGNILFFDEEDAARLADA---VRV-------SQLEADLAQLGGGLETEI-GEKGVNLSGGQKARV---  791 (1560)
T ss_pred             EeCCCccCCCcHHHHHHcCChhhHHHHHHH---HHH-------hhhHHHHHHhhccchHHh-cCCCCCCCHHHHHHH---
Confidence            8888775432 1111111000000000000   000       0000001111  222111 122567999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEeccc
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nk  414 (537)
                       ++|++++. +  |++++||  |++++..  ..+++.++  ...+.+++++ +|+......++ ++++++|++...|+..
T Consensus       792 -aLARAl~~-~--p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlv-TH~~~~~~~ad~ii~l~~G~i~~~G~~~  866 (1560)
T PTZ00243        792 -SLARAVYA-N--RDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA-THQVHVVPRADYVVALGDGRVEFSGSSA  866 (1560)
T ss_pred             -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence             99999996 5  8999999  9999643  33333322  1123456666 78887776655 8999999999888877


Q ss_pred             chh
Q psy16304        415 NLS  417 (537)
Q Consensus       415 dl~  417 (537)
                      ++.
T Consensus       867 ~l~  869 (1560)
T PTZ00243        867 DFM  869 (1560)
T ss_pred             HHH
Confidence            764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=8.1e-14  Score=130.33  Aligned_cols=164  Identities=13%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch-hhHHHHhhhhcccc
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED-FRTIWKQYLGTVSQ  267 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q  267 (537)
                      ++|+..+|+.+.|.||||+|||||+++|+|.    ..|++|    +|.+.+ ..+..     ..+ ++ ..-.|+|.   
T Consensus        21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL----l~p~~G----~v~~~~-~~i~~-----~~~~~~-~~l~yLGH---   82 (209)
T COG4133          21 LSFTLNAGEALQITGPNGAGKTTLLRILAGL----LRPDAG----EVYWQG-EPIQN-----VRESYH-QALLYLGH---   82 (209)
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHHcc----cCCCCC----eEEecC-CCCcc-----chhhHH-HHHHHhhc---
Confidence            5677889999999999999999999999999    999999    888875 21111     111 11 11123343   


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      .+.+=.+++                +.+.+.+...+..   .......+..+|+.+.. +..+.+||-||++|+    ++
T Consensus        83 ~~giK~eLT----------------a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~~~LSAGQqRRv----Al  141 (209)
T COG4133          83 QPGIKTELT----------------ALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPVGQLSAGQQRRV----AL  141 (209)
T ss_pred             cccccchhh----------------HHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccchhhcchhHHHHH----HH
Confidence            111000000                1222222222111   11222345577887776 445899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH-HHHHHHHHh---cCCEEEEEEeCCCcchhh
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF-RTIWKQYLG---TVSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~-~~l~~~~~~---~~~~vIlVvdshd~~~~~  395 (537)
                      |+-.+. .  .++-+||  +++++.. ...+..++.   ...+.|+.+ +|......
T Consensus       142 ArL~ls-~--~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt-tHq~l~~~  194 (209)
T COG4133         142 ARLWLS-P--APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT-THQPLPIA  194 (209)
T ss_pred             HHHHcC-C--CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe-cCCccCCC
Confidence            988886 4  5888999  7777332 222333222   223455555 77765543

>KOG0066|consensus

Probab=99.41  E-value=1e-13  Score=142.97  Aligned_cols=172  Identities=16%  Similarity=0.261  Sum_probs=106.3

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      .|-+.-..+|+||||||+||||||++|.|.    +.|+.|    +..-+....+..+|+...+.++       +      
T Consensus       607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk----l~P~~G----E~RKnhrL~iG~FdQh~~E~L~-------~------  665 (807)
T KOG0066|consen  607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGK----LDPNDG----ELRKNHRLRIGWFDQHANEALN-------G------  665 (807)
T ss_pred             cccccccceeEEECCCCccHHHHHHHHhcC----CCCCcc----hhhccceeeeechhhhhHHhhc-------c------
Confidence            344556688999999999999999999999    999999    6655544555555552221111       0      


Q ss_pred             CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304        270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV  349 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all  349 (537)
                          +.+.                .+.+...-++.. ..+...+-.+|+.....+-.+..||||++.||    +++...+
T Consensus       666 ----Eetp----------------~EyLqr~FNlpy-q~ARK~LG~fGL~sHAHTikikdLSGGQKaRV----alaeLal  720 (807)
T KOG0066|consen  666 ----EETP----------------VEYLQRKFNLPY-QEARKQLGTFGLASHAHTIKIKDLSGGQKARV----ALAELAL  720 (807)
T ss_pred             ----ccCH----------------HHHHHHhcCCCh-HHHHHHhhhhhhhhccceEeeeecCCcchHHH----HHHHHhc
Confidence                0000                011111111211 12233345677777777777889999999999    6655444


Q ss_pred             ccCCceEEEEEe--cCch--hhHHHHHHHHHhcCCEEEEEEeCCCcchhh--hhhhhhhcCCcEEEEec
Q psy16304        350 EYGNKYEVFLYD--LGGS--EDFRTIWKQYLGTVSQTLLVSHSLSGRPDD--RCQVYLMSCNCQVYLIS  412 (537)
Q Consensus       350 ~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~~~~~vIlVvdshd~~~~~--~~~i~ll~~G~ii~~g~  412 (537)
                        .+ |+++|||  |+.+  +.+..+-+.+ +.+.+.++++ +||.....  .|..|++++..|-.+.+
T Consensus       721 --~~-PDvlILDEPTNNLDIESIDALaEAI-ney~GgVi~V-sHDeRLi~eT~C~LwVvE~Q~i~eIdG  784 (807)
T KOG0066|consen  721 --GG-PDVLILDEPTNNLDIESIDALAEAI-NEYNGGVIMV-SHDERLIVETDCNLWVVENQGIDEIDG  784 (807)
T ss_pred             --CC-CCEEEecCCCCCcchhhHHHHHHHH-HhccCcEEEE-ecccceeeecCceEEEEccCChhhccc
Confidence              55 9999999  8888  4444444444 4555655566 56644333  34488888765544443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.39  E-value=1.7e-13  Score=123.73  Aligned_cols=135  Identities=16%  Similarity=0.187  Sum_probs=93.8

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      ++++++.+|+++-|+||+|+|||||+.-+.|.    ..+   -.|    ++.+++ .++..+..         .++.+|.
T Consensus        20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~----La~~F~~~G----~~~l~~-~~l~~lPa---------~qRq~Gi   81 (213)
T COG4136          20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA----LAGQFSCTG----ELWLNE-QRLDMLPA---------AQRQIGI   81 (213)
T ss_pred             eeeEEecCCcEEEEECCCCccHHHHHHHHHhh----cccCcceee----EEEECC-eeccccch---------hhhheee
Confidence            45688899999999999999999999999997    543   456    777775 44433222         2377999


Q ss_pred             cccCCCCCCCccceeeEEee--cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM--CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D--s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +||++.+|+....+--+++.  .+..            ++ .....+...+...|+.+.- .+.+.+|||||+.|+    
T Consensus        82 LFQD~lLFphlsVg~Nl~fAlp~~~K------------G~-aRr~~a~aAL~~~gL~g~f-~~dP~tlSGGQrARv----  143 (213)
T COG4136          82 LFQDALLFPHLSVGQNLLFALPATLK------------GN-ARRNAANAALERSGLDGAF-HQDPATLSGGQRARV----  143 (213)
T ss_pred             eecccccccccccccceEEecCcccc------------cH-HHHhhHHHHHHHhccchhh-hcChhhcCcchHHHH----
Confidence            99999999987664333332  1110            00 0001112334456777665 344999999999999    


Q ss_pred             ccccceeccCCceEEEEEe
Q psy16304        343 GFNRARVEYGNKYEVFLYD  361 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD  361 (537)
                      ++.++++. .  |++++||
T Consensus       144 aL~R~Lla-~--Pk~lLLD  159 (213)
T COG4136         144 ALLRALLA-Q--PKALLLD  159 (213)
T ss_pred             HHHHHHHh-C--cceeeeC
Confidence            99999885 3  8999999

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.39  E-value=1.1e-11  Score=133.64  Aligned_cols=208  Identities=23%  Similarity=0.328  Sum_probs=131.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCch----h----hHHHHhhhhc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSED----F----RTIWKQYLGT  264 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~----~----r~~~~~~i~~  264 (537)
                      .+|+|+|.+|+|||||++.|.|.+.+......|+|+    ..+.++| ..+.+||++|+..    +    +......+..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-REFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-cEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            369999999999999999999986554555556443    3456665 8999999999875    1    1111122222


Q ss_pred             cccCCCCCCCccceeeEEee-cCccc-----------------------cc--C----Ccc-------------------
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS--G----IPD-------------------  295 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~--~----l~~-------------------  295 (537)
                                 ++++++++| .+...                       .+  .    ..+                   
T Consensus        81 -----------ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g  149 (435)
T PRK00093         81 -----------ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG  149 (435)
T ss_pred             -----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC
Confidence                       677777777 22100                       00  0    000                   


Q ss_pred             ---cccccCc-CCcc-----ccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee----ccCCceEEEEEec
Q psy16304        296 ---ELTSATH-LPLV-----DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV----EYGNKYEVFLYDL  362 (537)
Q Consensus       296 ---~l~~~~~-l~~~-----~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all----~~~e~p~lllLDT  362 (537)
                         .++.+.. ....     ......+.++|.+++||+++++.|.+..+..+.+..+.++..+    ..++ ..+.++||
T Consensus       150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~lvDT  228 (435)
T PRK00093        150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-QKYTLIDT  228 (435)
T ss_pred             HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-eeEEEEEC
Confidence               0000000 0000     0123467799999999999999999988777766666555432    2244 68999999


Q ss_pred             Cchhh----------HHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        363 GGSED----------FRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       363 ~Gl~~----------~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +|+..          +.... ..+++.++++++|+|..+........  ..+.+.|+++....|| |+.
T Consensus       229 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~  297 (435)
T PRK00093        229 AGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV  297 (435)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence            99622          11111 23567789999999988876655444  3345578888888888 763

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.37  E-value=1.3e-11  Score=140.89  Aligned_cols=210  Identities=20%  Similarity=0.261  Sum_probs=133.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCCCchhh--------HHHHhhhhc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSEDFR--------TIWKQYLGT  264 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G~~~~r--------~~~~~~i~~  264 (537)
                      -.+|+|+|.+|+|||||+|.|+|...+...++.|+|++.+...   ++..+.+||++|+....        ......+. 
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~-  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS-  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH-
Confidence            4579999999999999999999987666778889888766542   24789999999975311        11111122 


Q ss_pred             cccCCCCCCCccceeeEEee-cCc----cc-----------------------------------------------ccC
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM-CGV----HQ-----------------------------------------------VSG  292 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D-s~~----~~-----------------------------------------------~~~  292 (537)
                                .++++++|+| ...    +.                                               ..+
T Consensus       354 ----------~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        354 ----------LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG  423 (712)
T ss_pred             ----------hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence                      2777888887 211    00                                               000


Q ss_pred             Cccccccc-CcCCcc--------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEE
Q psy16304        293 IPDELTSA-THLPLV--------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFL  359 (537)
Q Consensus       293 l~~~l~~~-~~l~~~--------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lll  359 (537)
                      +.+.++++ ..+...        ......+.++|.+++||+++++.|.++++..++...++++..    +..++ .++.+
T Consensus       424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-~~~~l  502 (712)
T PRK09518        424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-EDWLF  502 (712)
T ss_pred             chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-CEEEE
Confidence            00000000 000000        011245779999999999999999998865555544444432    33354 67889


Q ss_pred             EecCchhh----------HHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        360 YDLGGSED----------FRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       360 LDT~Gl~~----------~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      |||+|+..          +..+. ...++.++++++|+|..+..+.....  ..+.+.|+++....|| |+.
T Consensus       503 iDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~  574 (712)
T PRK09518        503 IDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM  574 (712)
T ss_pred             EECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence            99999721          11111 23356789999999998876666555  2344578888888888 774

>KOG0073|consensus

Probab=99.30  E-value=3.9e-12  Score=115.89  Aligned_cols=92  Identities=36%  Similarity=0.739  Sum_probs=82.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..++.++|++||||||+++.+.|.....+.||-||...++.+.+ +.+.+||.+|+...|+.|+.|+..          
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~-~~L~iwDvGGq~~lr~~W~nYfes----------   83 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKG-YTLNIWDVGGQKTLRSYWKNYFES----------   83 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecc-eEEEEEEcCCcchhHHHHHHhhhc----------
Confidence            467799999999999999999999988888999999999999997 999999999999999999999998          


Q ss_pred             ccceeeEEee-cCcccccCCccccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                       ++++++|+| +++.++++....+.
T Consensus        84 -tdglIwvvDssD~~r~~e~~~~L~  107 (185)
T KOG0073|consen   84 -TDGLIWVVDSSDRMRMQECKQELT  107 (185)
T ss_pred             -cCeEEEEEECchHHHHHHHHHHHH
Confidence             999999999 77766655554443

>KOG0070|consensus

Probab=99.29  E-value=1.5e-12  Score=121.40  Aligned_cols=124  Identities=31%  Similarity=0.611  Sum_probs=97.7

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..++..+|.+||..||||||++..|...++-...||.||+.+++.+.+ +++..||.+|+.++|.+|+.|+..      
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn-~~f~vWDvGGq~k~R~lW~~Y~~~------   84 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKN-ISFTVWDVGGQEKLRPLWKHYFQN------   84 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcc-eEEEEEecCCCcccccchhhhccC------
Confidence            3345678899999999999999999987776556999999999999996 999999999999999999999888      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcC
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILG  332 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSg  332 (537)
                           ++++++|+| +++++..+..+.+..+-....  ....++.++    +.|..+++.+|-
T Consensus        85 -----t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~----aNKqD~~~als~  136 (181)
T KOG0070|consen   85 -----TQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVF----ANKQDLPGALSA  136 (181)
T ss_pred             -----CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEE----echhhccccCCH
Confidence                 999999999 888888877776654422211  233445554    345555555553

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.28  E-value=5.5e-13  Score=132.44  Aligned_cols=65  Identities=5%  Similarity=0.022  Sum_probs=42.6

Q ss_pred             chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchh--hHHHHHHHHHhcC-CEEEEEEeCCCcchhh
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSE--DFRTIWKQYLGTV-SQTLLVSHSLSGRPDD  395 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~-~~vIlVvdshd~~~~~  395 (537)
                      ..+..|||||++|+    +++++++.  .++ |+++++|  |+|++  ....+++.+.+.. +.+++++ +|+.+...
T Consensus       154 ~~~~~lS~G~~~r~----~la~~l~~~~~~~-~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~-~h~~~~~~  225 (243)
T cd03272         154 QEMQQLSGGQKSLV----ALALIFAIQKCDP-APFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT-TFRPELLE  225 (243)
T ss_pred             ccccccCHHHHHHH----HHHHHHHHhccCC-CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHh
Confidence            44788999999999    99999863  243 7999999  88983  2233333333322 3455555 67655443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.26  E-value=7.6e-13  Score=127.79  Aligned_cols=154  Identities=12%  Similarity=0.047  Sum_probs=86.7

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee-----eeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF-----NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG  263 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~-----t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~  263 (537)
                      +++.+.+| +++|+||||||||||+++|.|.    ..+..|.     ....+.+.+ .     +.  ..   ......++
T Consensus        16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l----~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~---~~~~~~v~   79 (197)
T cd03278          16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV----LGEQSAKSLRGEKMSDVIFAG-S-----ET--RK---PANFAEVT   79 (197)
T ss_pred             eeeecCCC-cEEEECCCCCCHHHHHHHHHHH----hccccchhhcccCHHHHhccC-C-----CC--CC---CCceEEEE
Confidence            34556688 9999999999999999999987    5554330     001222222 1     10  00   01125688


Q ss_pred             ccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++||++..+        +... .   .+.+.+.++                .   .+. ....+.+||+||++++    +
T Consensus        80 ~vfq~~~~~--------~~~~-~---~~~~~~~l~----------------~---~~~-~~~~~~~LS~G~kqrl----~  123 (197)
T cd03278          80 LTFDNSDGR--------YSII-S---QGDVSEIIE----------------A---PGK-KVQRLSLLSGGEKALT----A  123 (197)
T ss_pred             EEEEcCCCc--------eeEE-e---hhhHHHHHh----------------C---CCc-cccchhhcCHHHHHHH----H
Confidence            899987743        0000 0   000111111                1   111 2344789999999999    8


Q ss_pred             cccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhh
Q psy16304        344 FNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDR  396 (537)
Q Consensus       344 la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~  396 (537)
                      ++++++.  ..+ |+++++|  |+|++..  ..+++.+.+. .+.+++++ +|+......
T Consensus       124 la~~l~~~~~~~-~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii-tH~~~~~~~  181 (197)
T cd03278         124 LALLFAIFRVRP-SPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI-THRKGTMEA  181 (197)
T ss_pred             HHHHHHHhccCC-CCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE-ECCHHHHhh
Confidence            8887752  133 6899999  8888322  2222222221 13456666 788766543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.24  E-value=1.6e-12  Score=130.56  Aligned_cols=95  Identities=8%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTL  383 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vI  383 (537)
                      .+..+|+........+.+|||||+||+    .++++++..+ + |+++++|  |+|++     .....+..+.+. +.++
T Consensus       152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl----~LAraL~~~~~~-p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tv  225 (261)
T cd03271         152 TLCDVGLGYIKLGQPATTLSGGEAQRI----KLAKELSKRSTG-KTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTV  225 (261)
T ss_pred             HHHHcCCchhhhcCccccCCHHHHHHH----HHHHHHhcCCCC-CcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence            344567765222444889999999999    9999998632 3 7899999  99992     222333444333 3456


Q ss_pred             EEEeCCCcchhhhhh-hhhh------cCCcEEEEecc
Q psy16304        384 LVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISA  413 (537)
Q Consensus       384 lVvdshd~~~~~~~~-i~ll------~~G~ii~~g~n  413 (537)
                      +++ +|++.....++ ++.+      +.|+++..|++
T Consensus       226 Iii-tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         226 VVI-EHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEE-eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            666 78887776555 7777      68888887753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0084|consensus

Probab=99.22  E-value=2.2e-11  Score=114.40  Aligned_cols=109  Identities=21%  Similarity=0.381  Sum_probs=90.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      .-.++.|+|.+|+|||+|+..+++..| ..+..|.|  |...++.++| .+++++||++||+++|.+...++..      
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~------   81 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG------   81 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC------
Confidence            447899999999999999999999988 45778999  6677888887 5789999999999999999999888      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           ++++++++| ++.+.+.++..|+..++.+   ........++|
T Consensus        82 -----ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~---~~~~v~~lLVG  121 (205)
T KOG0084|consen   82 -----AHGIIFVYDITKQESFNNVKRWIQEIDRY---ASENVPKLLVG  121 (205)
T ss_pred             -----CCeEEEEEEcccHHHhhhHHHHHHHhhhh---ccCCCCeEEEe
Confidence                 999999999 9999999988876655443   23334555665

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.21  E-value=2.3e-12  Score=125.91  Aligned_cols=75  Identities=12%  Similarity=0.091  Sum_probs=49.4

Q ss_pred             chhhhhcCCCceeeecccccccceecc--------CCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCC
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVEY--------GNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~~--------~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ..+..||+|+++++    +++++++..        .+ |+++++|  |++++.     +...+..+.+. ..+++++ +|
T Consensus       119 ~~~~~lS~G~~~r~----~la~al~~~p~~~~~~~~~-~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~i-tH  191 (213)
T cd03279         119 RPVSTLSGGETFLA----SLSLALALSEVLQNRGGAR-LEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVI-SH  191 (213)
T ss_pred             CCccccCHHHHHHH----HHHHHHHhHHHhhhccCCC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-EC
Confidence            34788999999999    888888642        13 7899999  888832     23333444333 3466666 78


Q ss_pred             Ccchhhhhh--hhhhcCCc
Q psy16304        390 SGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       390 d~~~~~~~~--i~ll~~G~  406 (537)
                      +++.....+  ++++++|.
T Consensus       192 ~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         192 VEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             chHHHHhhCcEEEEEecCC
Confidence            887666544  66666553

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0071|consensus

Probab=99.20  E-value=2.1e-11  Score=108.40  Aligned_cols=123  Identities=27%  Similarity=0.521  Sum_probs=96.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..++..+|..||||||++..|.-.......||.||+.++|.+.+ +.+..||.+|+...|..|++|+..         
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN-~kfNvwdvGGqd~iRplWrhYy~g---------   84 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG---------   84 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeee-eEEeeeeccCchhhhHHHHhhccC---------
Confidence            3567899999999999999999998766667899999999999996 999999999999999999999887         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP  334 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~  334 (537)
                        +.+++||+| +++++.++...++..+-+  ........+.++    +.|..++..+|-.+
T Consensus        85 --tqglIFV~Dsa~~dr~eeAr~ELh~ii~--~~em~~~~~Lvl----ANkQDlp~A~~pqe  138 (180)
T KOG0071|consen   85 --TQGLIFVVDSADRDRIEEARNELHRIIN--DREMRDAIILIL----ANKQDLPDAMKPQE  138 (180)
T ss_pred             --CceEEEEEeccchhhHHHHHHHHHHHhC--CHhhhcceEEEE----ecCcccccccCHHH
Confidence              999999999 777777776666544422  222233444444    34566566666554

>KOG0065|consensus

Probab=99.20  E-value=2.2e-11  Score=140.83  Aligned_cols=192  Identities=16%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-++++-..++|...||+|.+||||||||+.|+|.      -+.|+...+|.++| ..   .|+       ...++..||
T Consensus       806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R------~t~G~I~Gdi~i~G-~p---~~q-------~tF~R~~GY  868 (1391)
T KOG0065|consen  806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGR------KTGGYIEGDILISG-FP---KDQ-------ETFARVSGY  868 (1391)
T ss_pred             hhhcCceEecCCceeehhcCCCCchHHHHHHHhcC------cccceEEeEEEECC-ee---Cch-------hhhccccce
Confidence            34455566779999999999999999999999997      25665555888877 21   121       233478999


Q ss_pred             cccCCCCCCCccceeeEEeec---------CcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMC---------GVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPI  335 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds---------~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~r  335 (537)
                      |.|+....+..+..--+.+.+         ..+..+-+++.++.+ +++.     ..=.++|.++.|       ||.+||
T Consensus       869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll-eL~~-----~~daiVG~~G~G-------Ls~eQR  935 (1391)
T KOG0065|consen  869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELL-ELKE-----YADALVGLPGSG-------LSTEQR  935 (1391)
T ss_pred             eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh-Cchh-----hhhhhccCCCCC-------CCHHHh
Confidence            999877554433311111100         000000011100000 0111     111156666655       999999


Q ss_pred             eeeecccccccceeccCCce-EEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc--hhhhhh-hhhhc-
Q psy16304        336 ISLVPTVGFNRARVEYGNKY-EVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR--PDDRCQ-VYLMS-  403 (537)
Q Consensus       336 qrvs~ti~la~all~~~e~p-~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~--~~~~~~-i~ll~-  403 (537)
                      .|+    .++..++. +  | .+++||  |+||+....     ..+++.+.+. +|+.+ +|.+.  -++.-+ ..+|+ 
T Consensus       936 KrL----TIgVELvA-~--P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGq-tIlCT-IHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen  936 KRL----TIGVELVA-N--PSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ-TILCT-IHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred             cee----eEEEEEec-C--CceeEEecCCCCCccHHHHHHHHHHHHHHHhcCC-eEEEE-ecCCcHHHHHHHhHHHHHhc
Confidence            999    89999996 4  6 899999  999965544     2345555443 45555 66654  445544 66666 


Q ss_pred             CCcEEEEecccc
Q psy16304        404 CNCQVYLISAKN  415 (537)
Q Consensus       404 ~G~ii~~g~nkd  415 (537)
                      .|+.+..|...+
T Consensus      1007 GGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGE 1018 (1391)
T ss_pred             CCeEEEecCccc
Confidence            466666666553

>KOG0062|consensus

Probab=99.19  E-value=7.2e-12  Score=132.38  Aligned_cols=174  Identities=14%  Similarity=0.093  Sum_probs=109.4

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +...--.++++||+||+||||+++++.|.    ..|+.|    .+.+.+..++                   ++.+|.-.
T Consensus       385 ~d~e~~sRi~~vg~ng~gkst~lKi~~~~----l~~~rg----i~~~~~r~ri-------------------~~f~Qhhv  437 (582)
T KOG0062|consen  385 LDRESDSRISRVGENGDGKSTLLKILKGD----LTPTRG----IVGRHPRLRI-------------------KYFAQHHV  437 (582)
T ss_pred             CccchhhhhheeccCchhHHHHHHHHhcc----CCcccc----eeeeccccee-------------------cchhHhhh
Confidence            34556788999999999999999999999    899999    5554442333                   33222211


Q ss_pred             CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304        271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE  350 (537)
Q Consensus       271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~  350 (537)
                      -+.+...   ..+|          .......+. -..+....+..+|+++..-...+..|||||+.|+    ++|.....
T Consensus       438 d~l~~~v---~~vd----------~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv----afA~~~~~  499 (582)
T KOG0062|consen  438 DFLDKNV---NAVD----------FMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV----AFAACTWN  499 (582)
T ss_pred             hHHHHHh---HHHH----------HHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHH----HHHHHhcC
Confidence            0000000   0000          000000000 1111223455678776654554788999999999    88877774


Q ss_pred             cCCceEEEEEe--cCchh--hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        351 YGNKYEVFLYD--LGGSE--DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       351 ~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                        + |-+++||  |++++  ....+.+.+ +..+|.|+++ +||.++...+|  +|+.++|++.-+-+..
T Consensus       500 --~-PhlLVLDEPTNhLD~dsl~AL~~Al-~~F~GGVv~V-SHd~~fi~~~c~E~Wvve~g~vt~ieg~~  564 (582)
T KOG0062|consen  500 --N-PHLLVLDEPTNHLDRDSLGALAKAL-KNFNGGVVLV-SHDEEFISSLCKELWVVEDGKVTPIEGGI  564 (582)
T ss_pred             --C-CcEEEecCCCccccHHHHHHHHHHH-HhcCCcEEEE-ECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence              4 8999999  99993  333333444 4455656666 79999888777  9999999987654444

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.18  E-value=4.3e-11  Score=113.25  Aligned_cols=93  Identities=31%  Similarity=0.718  Sum_probs=79.8

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+++++|+.||||||+++.|.........||.|++...+.+.+ ..+.+||.+|+..++..|+.++..         
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~-~~~~~~d~gG~~~~~~~w~~y~~~---------   81 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKG-YSLTIWDLGGQESFRPLWKSYFQN---------   81 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETT-EEEEEEEESSSGGGGGGGGGGHTT---------
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCc-EEEEEEeccccccccccceeeccc---------
Confidence            4678899999999999999999998766678899999999999986 999999999999999999988877         


Q ss_pred             CccceeeEEee-cCcccccCCccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                        ++++++|+| ++.+++.+..+.+.
T Consensus        82 --~~~iIfVvDssd~~~l~e~~~~L~  105 (175)
T PF00025_consen   82 --ADGIIFVVDSSDPERLQEAKEELK  105 (175)
T ss_dssp             --ESEEEEEEETTGGGGHHHHHHHHH
T ss_pred             --cceeEEEEecccceeecccccchh
Confidence              899999999 66665555544443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0074|consensus

Probab=99.17  E-value=2.9e-11  Score=107.54  Aligned_cols=92  Identities=36%  Similarity=0.690  Sum_probs=82.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|..+|||||+|+.|.+.....+.||.||+..++.++|...+.+||.+|+...|..|..|+..          
T Consensus        16 rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyen----------   85 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYEN----------   85 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhc----------
Confidence            5678999999999999999999999887889999999999999999999999999999999999999998          


Q ss_pred             ccceeeEEee-cCcccccCCcccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                       .+.+++|+| +++.++++..+.+
T Consensus        86 -vd~lIyVIDS~D~krfeE~~~el  108 (185)
T KOG0074|consen   86 -VDGLIYVIDSTDEKRFEEISEEL  108 (185)
T ss_pred             -cceEEEEEeCCchHhHHHHHHHH
Confidence             999999999 6666666554433

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.17  E-value=2.3e-11  Score=130.60  Aligned_cols=201  Identities=12%  Similarity=0.054  Sum_probs=130.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..+||.+.+||++||.|.-|||+|-|++.|.|.    ..+..|    ++.++| ..+...+      .+...+..++||+
T Consensus       276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~----~~~~~G----~i~l~G-~~v~~~s------p~~Ai~~Gi~~v~  340 (500)
T COG1129         276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGA----RPASSG----EILLDG-KPVRIRS------PRDAIKAGIAYVP  340 (500)
T ss_pred             eCceeEEeCCcEEEEeccccCCHHHHHHHHhCC----CcCCCc----eEEECC-EEccCCC------HHHHHHcCCEeCC
Confidence            467899999999999999999999999999998    788999    999998 5554432      2234456788888


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      .+-.     .++++...+ ...-....+.....  ++..-.........+..+++....-...+..||||.+|++    .
T Consensus       341 EDRk-----~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV----v  411 (500)
T COG1129         341 EDRK-----SEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV----V  411 (500)
T ss_pred             cccc-----cCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH----H
Confidence            7754     333332222 00000000000000  1111111111122223444444444566899999999999    9


Q ss_pred             cccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        344 FNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       344 la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      +++.+.. +  |++++||  |-|.     .++..+++++.+++. +|+++ +.++.+...++  +.+|.+|++.......
T Consensus       412 larwL~~-~--p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~-ail~i-SSElpEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         412 LARWLAT-D--PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK-AILMI-SSELPELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HHHHHhc-C--CCEEEECCCCcCcccchHHHHHHHHHHHHHCCC-EEEEE-eCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence            9999996 5  8999999  8888     455566677776654 45555 55655555333  9999999998876665


Q ss_pred             ch
Q psy16304        415 NL  416 (537)
Q Consensus       415 dl  416 (537)
                      +.
T Consensus       487 ~~  488 (500)
T COG1129         487 EA  488 (500)
T ss_pred             cC
Confidence            43

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=6e-11  Score=115.89  Aligned_cols=154  Identities=14%  Similarity=0.171  Sum_probs=83.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR  276 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~  276 (537)
                      ++++|+|||||||||++++|...        -|           .+.           .......+++++|....++..+
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~~--------~G-----------~~~-----------~~~~~~~i~~~~~~~~~~~~~~   75 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLFV--------FG-----------FRA-----------SKMRQKKLSDLIHNSAGHPNLD   75 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--------hc-----------cCH-----------HHhhhhhHHHHhcCCCCCCCCc
Confidence            78999999999999999999722        11           000           0111135777777766544433


Q ss_pred             ceee-EEeecCcccccCCcccccccCcCCc-cc----cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304        277 TCQV-YLIMCGVHQVSGIPDELTSATHLPL-VD----FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE  350 (537)
Q Consensus       277 ~~il-~v~Ds~~~~~~~l~~~l~~~~~l~~-~~----~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~  350 (537)
                      ..-+ ..+.. ....    +.+... ++.. ..    ........+++++.. ...+..||+|+++++    +++++++.
T Consensus        76 ~~~~~~~~~~-~~~~----~~l~~~-g~~~~~~~~~v~~~~~~~~~~L~~~~-~~~~~~lS~G~~~r~----~la~al~~  144 (212)
T cd03274          76 SCSVEVHFQE-IIDK----PLLKSK-GIDLDHNRFLILQGEVEQIAQMPKKS-WKNISNLSGGEKTLS----SLALVFAL  144 (212)
T ss_pred             eEEEEEEEEe-CCCH----HHHHHC-CcCCCCCceEEcCCcEEEeecccccc-ccchhhcCHHHHHHH----HHHHHHHh
Confidence            2211 12210 0000    000000 0000 00    113344577776554 444889999999999    99988853


Q ss_pred             c--CCceEEEEEe--cCchh--hHHHHHHHHHhc-CCEEEEEEeCCCcch
Q psy16304        351 Y--GNKYEVFLYD--LGGSE--DFRTIWKQYLGT-VSQTLLVSHSLSGRP  393 (537)
Q Consensus       351 ~--~e~p~lllLD--T~Gl~--~~~~l~~~~~~~-~~~vIlVvdshd~~~  393 (537)
                      .  ++ |+++++|  |+|++  ....+++.+.+. .+++++++ +|+...
T Consensus       145 ~~~~~-p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv-s~~~~~  192 (212)
T cd03274         145 HHYKP-TPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI-SLRNNM  192 (212)
T ss_pred             cccCC-CCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECcHHH
Confidence            1  33 7999999  88883  233333333222 23455555 465443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.12  E-value=4.7e-11  Score=124.63  Aligned_cols=153  Identities=15%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +..||++|++||||-|||||+++|+|.    +.|+.|    .   ..+.++++-.+-=..++....+..+....      
T Consensus       364 i~~gEvigilGpNgiGKTTFvk~LAG~----ikPdeg----~---~~~~~vSyKPQyI~~~~~gtV~~~l~~~~------  426 (591)
T COG1245         364 IYDGEVIGILGPNGIGKTTFVKLLAGV----IKPDEG----S---EEDLKVSYKPQYISPDYDGTVEDLLRSAI------  426 (591)
T ss_pred             eecceEEEEECCCCcchHHHHHHHhcc----ccCCCC----C---CccceEeecceeecCCCCCcHHHHHHHhh------
Confidence            457999999999999999999999999    999999    3   11233332221000000000001000000      


Q ss_pred             CCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccC
Q psy16304        273 PDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG  352 (537)
Q Consensus       273 ~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~  352 (537)
                                    ...+         ...+ .   ....+.-+.+.... .+.+..||||+.||+    ++|.++.. +
T Consensus       427 --------------~~~~---------~~s~-~---~~ei~~pl~l~~i~-e~~v~~LSGGELQRv----aIaa~L~r-e  473 (591)
T COG1245         427 --------------RSAF---------GSSY-F---KTEIVKPLNLEDLL-ERPVDELSGGELQRV----AIAAALSR-E  473 (591)
T ss_pred             --------------hhhc---------ccch-h---HHhhcCccchHHHH-hcccccCCchhHHHH----HHHHHhcc-c
Confidence                          0000         0000 0   00111123333332 344788999999999    88888885 4


Q ss_pred             CceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        353 NKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       353 e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                        .++-+||  .++++..     ...++.+....+.+.+|+ .||....+.+.
T Consensus       474 --ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vV-dHDi~~~dyvs  523 (591)
T COG1245         474 --ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV-DHDIYMIDYVS  523 (591)
T ss_pred             --cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEE-ecceehhhhhh
Confidence              7899999  6677222     224467777777888888 89988877665

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.11  E-value=1.5e-11  Score=119.38  Aligned_cols=73  Identities=10%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             hhhhhcCCCceeeecc--cccccceeccCCceEEEEEe--cCchhhH--H-HHH---HHHHhcCCEEEEEEeCCCcchhh
Q psy16304        326 IIKRILGEPIISLVPT--VGFNRARVEYGNKYEVFLYD--LGGSEDF--R-TIW---KQYLGTVSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       326 li~~LSgG~rqrvs~t--i~la~all~~~e~p~lllLD--T~Gl~~~--~-~l~---~~~~~~~~~vIlVvdshd~~~~~  395 (537)
                      .+..||+|+++++.-.  ++++++++. +  |+++++|  +++++..  . .++   ..+.+....+++++ +|+++...
T Consensus       112 ~~~~LS~G~~~~~~la~rlala~al~~-~--p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiii-tH~~~~~~  187 (204)
T cd03240         112 MRGRCSGGEKVLASLIIRLALAETFGS-N--CGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVI-THDEELVD  187 (204)
T ss_pred             CccccCccHHHHHHHHHHHHHHHHhcc-C--CCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEE-EecHHHHh
Confidence            3678999999864211  156777764 4  8999999  8888432  2 222   33333223455666 67766554


Q ss_pred             hhh-hhhh
Q psy16304        396 RCQ-VYLM  402 (537)
Q Consensus       396 ~~~-i~ll  402 (537)
                      .++ ++.+
T Consensus       188 ~~d~i~~l  195 (204)
T cd03240         188 AADHIYRV  195 (204)
T ss_pred             hCCEEEEE
Confidence            444 4444

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.07  E-value=5.6e-11  Score=130.03  Aligned_cols=252  Identities=12%  Similarity=0.115  Sum_probs=136.6

Q ss_pred             CCcccccccceeeeeeecc-------chhhhhHHHHHhhhcccccccccccccccCccccccc----cCCCCCC---chh
Q psy16304         72 IEPIEMVEHKMLRDVVLYN-------MYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSV----LSDDPAP---TFE  137 (537)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---p~~  137 (537)
                      |-|+=+-+|.....++.|=       .|-.+..+++-+..++.+|+.=.+.+.|+-+|..+-.    ....+..   .++
T Consensus       305 v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~  384 (604)
T COG4178         305 VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRID  384 (604)
T ss_pred             HHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccc
Confidence            3444455555555555553       3667778888888888888888888888877753111    1111111   111


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        138 VCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       138 ~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      +     ... - +..+.++|++-.-+...                 .+....++.+.+|+.+.|.|+||||||||++.|+
T Consensus       385 ~-----~~~-~-~~~i~~~nl~l~~p~~~-----------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia  440 (604)
T COG4178         385 F-----DDN-A-DHGITLENLSLRTPDGQ-----------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALA  440 (604)
T ss_pred             c-----ccc-c-cceeEEeeeeEECCCCC-----------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh
Confidence            1     000 0 24556666666422211                 1234566778899999999999999999999999


Q ss_pred             CCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc
Q psy16304        218 GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL  297 (537)
Q Consensus       218 G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l  297 (537)
                      |.    -+--+|    ++....+..+-++.+...-... ..++.+.| |+...                .-.-+++.+.|
T Consensus       441 GL----WP~g~G----~I~~P~~~~~lflpQ~PY~p~G-tLre~l~Y-P~~~~----------------~~~d~~l~~vL  494 (604)
T COG4178         441 GL----WPWGSG----RISMPADSALLFLPQRPYLPQG-TLREALCY-PNAAP----------------DFSDAELVAVL  494 (604)
T ss_pred             cc----CccCCC----ceecCCCCceEEecCCCCCCCc-cHHHHHhC-CCCCC----------------CCChHHHHHHH
Confidence            98    666667    6665532333333332111000 11122222 11110                00000011111


Q ss_pred             cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHH
Q psy16304        298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWK  373 (537)
Q Consensus       298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~  373 (537)
                      ...+ +...      ...+  .+  ..+--..||+||+||+    ++||.+++ +  |++.+||  |++++...+  +.+
T Consensus       495 ~~vg-L~~L------~~rl--~~--~~~W~~vLS~GEqQRl----afARilL~-k--P~~v~LDEATsALDe~~e~~l~q  556 (604)
T COG4178         495 HKVG-LGDL------AERL--DE--EDRWDRVLSGGEQQRL----AFARLLLH-K--PKWVFLDEATSALDEETEDRLYQ  556 (604)
T ss_pred             HHcC-cHHH------HHHH--hc--cCcHhhhcChhHHHHH----HHHHHHHc-C--CCEEEEecchhccChHHHHHHHH
Confidence            1110 0000      0001  11  1122456999999999    99999998 5  8999999  999954433  234


Q ss_pred             HHHhc-CCEEEEEEeCCCcc
Q psy16304        374 QYLGT-VSQTLLVSHSLSGR  392 (537)
Q Consensus       374 ~~~~~-~~~vIlVvdshd~~  392 (537)
                      .+.++ -+.++|.+ .|...
T Consensus       557 ~l~~~lp~~tvISV-~Hr~t  575 (604)
T COG4178         557 LLKEELPDATVISV-GHRPT  575 (604)
T ss_pred             HHHhhCCCCEEEEe-ccchh
Confidence            44443 45566666 66543

>KOG0094|consensus

Probab=99.06  E-value=2.8e-10  Score=106.85  Aligned_cols=109  Identities=19%  Similarity=0.337  Sum_probs=89.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+++++|..++|||||+...+-..| ..+.+|.|  |...++.+.| .+.+++|||+||+++|.+...|+..      
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd------   94 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD------   94 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC------
Confidence            458899999999999999999998877 77999999  6677787776 6899999999999999999999998      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccC-CccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR-SVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llG  317 (537)
                           +.+++.|+| ++...+++...|++.....   ... ...+.++|
T Consensus        95 -----s~vaviVyDit~~~Sfe~t~kWi~dv~~e---~gs~~viI~LVG  135 (221)
T KOG0094|consen   95 -----SSVAVIVYDITDRNSFENTSKWIEDVRRE---RGSDDVIIFLVG  135 (221)
T ss_pred             -----CeEEEEEEeccccchHHHHHHHHHHHHhc---cCCCceEEEEEc
Confidence                 899999999 8888888887766544332   222 24556776

>KOG2355|consensus

Probab=99.06  E-value=2.9e-10  Score=107.86  Aligned_cols=205  Identities=13%  Similarity=0.090  Sum_probs=107.0

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +..+.+.++...|....    |     .+.++        ++....|.+..|||.|||||||||++|+|.    .-.-.|
T Consensus        11 ~~aievsgl~f~y~~~d----P-----~~~Df--------nldlp~gsRcLlVGaNGaGKtTlLKiLsGK----hmv~~~   69 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD----P-----IFFDF--------NLDLPAGSRCLLVGANGAGKTTLLKILSGK----HMVGGG   69 (291)
T ss_pred             cceEEEeccEEecccCC----c-----eEEEE--------eeccCCCceEEEEecCCCchhhhHHHhcCc----ccccCC
Confidence            45666777766654332    2     23333        355668999999999999999999999998    433335


Q ss_pred             eeeEEEEECCcEEEEEeecC----CC-chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC
Q psy16304        230 FNRARVEYGNKYEVFLYDLG----GS-EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP  304 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~----G~-~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~  304 (537)
                          .|.+.|.-.+  .|+.    |. .-+...|.+..+. ..+..+          -.|     + .+...+..++...
T Consensus        70 ----~v~VlgrsaF--hDt~l~~Sgdl~YLGgeW~~~~~~-agevpl----------q~D-----~-sae~mifgV~g~d  126 (291)
T KOG2355|consen   70 ----VVQVLGRSAF--HDTSLESSGDLSYLGGEWSKTVGI-AGEVPL----------QGD-----I-SAEHMIFGVGGDD  126 (291)
T ss_pred             ----eEEEcCcCcc--ccccccccCceeEecccccccccc-cccccc----------ccc-----c-cHHHHHhhccCCC
Confidence                5555441111  1110    00 0000011111110 000000          000     0 0011111122222


Q ss_pred             ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhc--
Q psy16304        305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGT--  378 (537)
Q Consensus       305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~--  378 (537)
                      . .+.+..+.++.+.-   .-.++..|.||++|+    .++..+++ +  .++++||  |.-++-  +..+++-+..+  
T Consensus       127 p-~Rre~LI~iLDIdl---~WRmHkvSDGqrRRV----QicMGLL~-P--fkVLLLDEVTVDLDVlARadLLeFlkeEce  195 (291)
T KOG2355|consen  127 P-ERREKLIDILDIDL---RWRMHKVSDGQRRRV----QICMGLLK-P--FKVLLLDEVTVDLDVLARADLLEFLKEECE  195 (291)
T ss_pred             h-hHhhhhhhheeccc---eEEEeeccccchhhh----HHHHhccc-c--eeEEEeeeeEeehHHHHHHHHHHHHHHHHh
Confidence            2 33444455555432   233778999999999    88888886 6  7999999  777732  23333322222  


Q ss_pred             CCEEEEEEeCCCcchhhh--hhhhhhcCCcEEE
Q psy16304        379 VSQTLLVSHSLSGRPDDR--CQVYLMSCNCQVY  409 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~--~~i~ll~~G~ii~  409 (537)
                      ..++.+||-+|-.+-++.  ..++.+..|++..
T Consensus       196 ~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  196 QRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             hcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            234455554665554444  3477788888765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.01  E-value=4.2e-11  Score=124.98  Aligned_cols=184  Identities=16%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--  270 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--  270 (537)
                      +.+|..+||+|+||-||||.+++|+|.    +.|.-|    ...-.             ..+..+.+.+-|.-.|+..  
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGe----l~PNLG----~~~~p-------------p~wdeVi~~FrGtELq~YF~~  155 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGE----LKPNLG----RYEDP-------------PSWDEVIKRFRGTELQNYFKK  155 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCc----cccCCC----CCCCC-------------CCHHHHHHHhhhhHHHHHHHH
Confidence            458999999999999999999999999    999998    22211             1122222222222111110  


Q ss_pred             CCCCccceeeEE---eecCccc-ccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        271 GRPDSRTCQVYL---IMCGVHQ-VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       271 l~~~~~~~il~v---~Ds~~~~-~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      ++.....+ ...   +|.-... -..+.+.++..+   .....+..+..+++.+..+.. +++||||+.||+    ++|.
T Consensus       156 l~~g~~r~-v~K~QYVd~iPk~~KG~v~elLk~~d---e~g~~devve~l~L~nvl~r~-v~~LSGGELQr~----aIaa  226 (591)
T COG1245         156 LYEGELRA-VHKPQYVDLIPKVVKGKVGELLKKVD---ERGKFDEVVERLGLENVLDRD-VSELSGGELQRV----AIAA  226 (591)
T ss_pred             HHcCCcce-ecchHHHHHHHHHhcchHHHHHHhhh---hcCcHHHHHHHhcchhhhhhh-hhhcCchHHHHH----HHHH
Confidence            00000000 000   0000000 001112221111   112234455678888887555 999999999999    9998


Q ss_pred             ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304        347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g  411 (537)
                      +++. +  .++-++|  ++.++-.     ....+.+.+. +..++|+ .||+..++.+. .+-+--|.+-++|
T Consensus       227 ~l~r-d--ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVV-EHDLavLD~lsD~vhI~YG~pg~YG  294 (591)
T COG1245         227 ALLR-D--ADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVV-EHDLAVLDYLSDFVHILYGEPGVYG  294 (591)
T ss_pred             HHhc-c--CCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEE-echHHHHHHhhheeEEEecCCccce
Confidence            8886 4  6899999  7777322     2233555544 4577888 89999888766 3333344444443

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.01  E-value=8.9e-10  Score=103.08  Aligned_cols=89  Identities=34%  Similarity=0.690  Sum_probs=72.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|++|||||||++.+++.....+.||.|++...+.+.+ ..+.+||++|+..++..|..++..           ++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~-----------a~   68 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDK-YEVCIFDLGGGANFRGIWVNYYAE-----------AH   68 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECC-EEEEEEECCCcHHHHHHHHHHHcC-----------CC
Confidence            479999999999999999998733567899998888888875 999999999999888888887766           89


Q ss_pred             eeeEEee-cCcccccCCccccc
Q psy16304        278 CQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~~l~  298 (537)
                      ++++++| ++...+.++..++.
T Consensus        69 ~ii~V~D~s~~~s~~~~~~~l~   90 (167)
T cd04161          69 GLVFVVDSSDDDRVQEVKEILR   90 (167)
T ss_pred             EEEEEEECCchhHHHHHHHHHH
Confidence            9999999 66555555444443

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0080|consensus

Probab=99.00  E-value=6.2e-10  Score=101.20  Aligned_cols=97  Identities=22%  Similarity=0.352  Sum_probs=80.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccC-cee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.++.|+|.+|+|||+|+..+....|-...| |.|  |....+.++| ..++.+||++|++++|.+...++..       
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg-------   83 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG-------   83 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc-------
Confidence            3679999999999999999999887744444 588  6677888887 5789999999999999999998888       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccccCcC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHL  303 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l  303 (537)
                          +.++++|+| +.++.+..+..|+..++.+
T Consensus        84 ----aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y  112 (209)
T KOG0080|consen   84 ----AQGIILVYDVTSRDTFVKLDIWLKELDLY  112 (209)
T ss_pred             ----CceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence                999999999 8888877776655555443

>cd04149 Arf6 Arf6 subfamily

Probab=98.99  E-value=1.1e-09  Score=102.69  Aligned_cols=89  Identities=28%  Similarity=0.616  Sum_probs=72.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|+.|||||||++.+.+..+..+.||.|++...+...+ +.+.+||++|+++++..+..++..          
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~----------   76 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG----------   76 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence            457899999999999999999987767667899997777777654 999999999999888777776665          


Q ss_pred             ccceeeEEee-cCcccccCCcc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~  295 (537)
                       ++++++++| ++...+.++..
T Consensus        77 -a~~ii~v~D~t~~~s~~~~~~   97 (168)
T cd04149          77 -TQGLIFVVDSADRDRIDEARQ   97 (168)
T ss_pred             -CCEEEEEEeCCchhhHHHHHH
Confidence             899999999 65554444433

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04120 Rab12 Rab12 subfamily

Probab=98.99  E-value=9.9e-10  Score=106.54  Aligned_cols=106  Identities=19%  Similarity=0.376  Sum_probs=80.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      -++++|..|+|||||++.+....| ..+.||.|  +....+.++| .+.+.+||++|+++++.++..++..         
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~---------   72 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS---------   72 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcC---------
Confidence            378999999999999999998777 45677876  4456677776 4888999999999999888888776         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++|+| ++.+.++++..++..+...   ......+.++|
T Consensus        73 --ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~---~~~~~piilVg  112 (202)
T cd04120          73 --AKGIILVYDITKKETFDDLPKWMKMIDKY---ASEDAELLLVG  112 (202)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCcEEEEE
Confidence              999999999 8877777776655433221   12234555664

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.99  E-value=1.3e-09  Score=103.65  Aligned_cols=89  Identities=30%  Similarity=0.657  Sum_probs=73.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|+.|||||||++.+....+..+.||.|++...+...+ +.+.+||++|++.++.+|..++..          
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~-~~~~i~D~~Gq~~~~~~~~~~~~~----------   84 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN----------   84 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence            346899999999999999999987667667899998777777765 999999999999998888887776          


Q ss_pred             ccceeeEEee-cCcccccCCcc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~  295 (537)
                       ++++++|+| ++.+++..+..
T Consensus        85 -a~~iI~V~D~s~~~s~~~~~~  105 (181)
T PLN00223         85 -TQGLIFVVDSNDRDRVVEARD  105 (181)
T ss_pred             -CCEEEEEEeCCcHHHHHHHHH
Confidence             899999999 66655544433

>cd04157 Arl6 Arl6 subfamily

Probab=98.99  E-value=1.1e-09  Score=100.69  Aligned_cols=81  Identities=33%  Similarity=0.629  Sum_probs=65.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC--ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI--ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      .|+++|++|||||||++.+++..+  ..+.||.|++...+... +..+.+||++|+.+++..+..++..           
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~-----------   68 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKG-NLSFTAFDMSGQGKYRGLWEHYYKN-----------   68 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEEC-CEEEEEEECCCCHhhHHHHHHHHcc-----------
Confidence            378999999999999999998743  56789999777666655 4899999999999888887776655           


Q ss_pred             cceeeEEee-cCcccc
Q psy16304        276 RTCQVYLIM-CGVHQV  290 (537)
Q Consensus       276 ~~~il~v~D-s~~~~~  290 (537)
                      ++++++++| ++...+
T Consensus        69 ~d~ii~v~D~~~~~~~   84 (162)
T cd04157          69 IQGIIFVIDSSDRLRL   84 (162)
T ss_pred             CCEEEEEEeCCcHHHH
Confidence            899999999 554433

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0078|consensus

Probab=98.98  E-value=1.3e-09  Score=103.92  Aligned_cols=109  Identities=20%  Similarity=0.353  Sum_probs=91.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...++.++|.+|+|||+++-++....| ..+..|.|  |...++.++| .+.+++||++|+++++.+...|+..      
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg------   84 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG------   84 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh------
Confidence            568899999999999999999999887 55678888  7778888887 5788999999999999999999888      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           +.++++|+| ++...++++..|+..++..   +.....+.++|
T Consensus        85 -----A~gi~LvyDitne~Sfeni~~W~~~I~e~---a~~~v~~~LvG  124 (207)
T KOG0078|consen   85 -----AMGILLVYDITNEKSFENIRNWIKNIDEH---ASDDVVKILVG  124 (207)
T ss_pred             -----cCeeEEEEEccchHHHHHHHHHHHHHHhh---CCCCCcEEEee
Confidence                 999999999 8888888888876666443   33456677776

>cd04154 Arl2 Arl2 subfamily

Probab=98.98  E-value=1.4e-09  Score=102.04  Aligned_cols=87  Identities=34%  Similarity=0.767  Sum_probs=71.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      ...+++++|++|||||||++.+.+..+..+.||.|+....+.+++ ..+.+||++|++.++..+..++..          
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~----------   81 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEG-YKLNIWDVGGQKTLRPYWRNYFES----------   81 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC----------
Confidence            346799999999999999999999877778899998888888875 999999999998887777766655          


Q ss_pred             ccceeeEEee-cCcccccCC
Q psy16304        275 SRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l  293 (537)
                       ++++++++| ++..++.+.
T Consensus        82 -~d~~i~v~d~~~~~s~~~~  100 (173)
T cd04154          82 -TDALIWVVDSSDRLRLDDC  100 (173)
T ss_pred             -CCEEEEEEECCCHHHHHHH
Confidence             899999999 555444433

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.98  E-value=1.3e-09  Score=103.75  Aligned_cols=88  Identities=28%  Similarity=0.666  Sum_probs=72.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      ++.+++|+|++|+|||||++.+....+..+.||.|++...+...+ +.+.+||++|++.++..+..++..          
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~----------   84 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-LKFTMWDVGGQDKLRPLWRHYYQN----------   84 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC----------
Confidence            467899999999999999999976666557799997777777765 999999999999888888777766          


Q ss_pred             ccceeeEEee-cCcccccCCc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~  294 (537)
                       ++++++++| ++.+.+....
T Consensus        85 -ad~iI~v~D~t~~~s~~~~~  104 (182)
T PTZ00133         85 -TNGLIFVVDSNDRERIGDAR  104 (182)
T ss_pred             -CCEEEEEEeCCCHHHHHHHH
Confidence             899999999 6655544443

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.97  E-value=1.4e-09  Score=103.52  Aligned_cols=88  Identities=28%  Similarity=0.506  Sum_probs=72.7

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|+...+..|..++..         
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~---------   84 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGN-IKFTTFDLGGHQQARRLWKDYFPE---------   84 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC---------
Confidence            3568899999999999999999999877667788887777777775 999999999998888888877766         


Q ss_pred             CccceeeEEee-cCcccccCC
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l  293 (537)
                        ++++++++| ++.+++...
T Consensus        85 --ad~ii~vvD~~~~~~~~~~  103 (184)
T smart00178       85 --VNGIVYLVDAYDKERFAES  103 (184)
T ss_pred             --CCEEEEEEECCcHHHHHHH
Confidence              899999999 555444333

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.96  E-value=1.8e-09  Score=105.15  Aligned_cols=89  Identities=18%  Similarity=0.393  Sum_probs=62.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHH-HHhCCCCccccCceeeeeEEEEE--C-CcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNRARVEY--G-NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~-~L~G~~~~~~~Pt~G~t~~~i~i--~-g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...+++|+|++|||||||++ .+.|.....+.||.|.....+.+  + +.+.+.+||++|+..++..+..++..      
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~------   81 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK------   81 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc------
Confidence            34689999999999999995 56665335577888865555443  3 36899999999988776555444333      


Q ss_pred             CCCCccceeeEEee-cCcccccCCc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                           .+++++++| ++...+..+.
T Consensus        82 -----~~~~i~v~d~~~~~s~~~~~  101 (215)
T PTZ00132         82 -----GQCAIIMFDVTSRITYKNVP  101 (215)
T ss_pred             -----CCEEEEEEECcCHHHHHHHH
Confidence                 678889999 5554444333

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.96  E-value=1.4e-09  Score=101.45  Aligned_cols=85  Identities=33%  Similarity=0.586  Sum_probs=68.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      ++++|+.|+|||||++.+.+..+ ..+.||.|+....+... +..+.+||++|+.+++..+..++..           ++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~-----------ad   69 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSG-----------SQ   69 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeC-CeEEEEEECCCCcchhHHHHHHHhh-----------CC
Confidence            68999999999999999998766 56789999765555544 4899999999999888888877776           89


Q ss_pred             eeeEEee-cCcccccCCcc
Q psy16304        278 CQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~  295 (537)
                      ++++++| ++...+.....
T Consensus        70 ~ii~V~D~t~~~s~~~~~~   88 (164)
T cd04162          70 GLIFVVDSADSERLPLARQ   88 (164)
T ss_pred             EEEEEEECCCHHHHHHHHH
Confidence            9999999 66554444443

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04109 Rab28 Rab28 subfamily

Probab=98.96  E-value=1.8e-09  Score=105.41  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=72.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +++++|++|||||||++.+.+..+ ..+.||.|.  ....+.+++  .+.+.+||++|++.+..++..++..        
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~--------   73 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYG--------   73 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhc--------
Confidence            689999999999999999998877 557899883  345666654  4789999999998877777777665        


Q ss_pred             CCccceeeEEee-cCcccccCCccccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                         ++++++++| ++.+.++++..++..+
T Consensus        74 ---ad~iilV~D~t~~~s~~~~~~w~~~l   99 (215)
T cd04109          74 ---AHAVFLVYDVTNSQSFENLEDWYSMV   99 (215)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence               999999999 7766666665554444

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0092|consensus

Probab=98.95  E-value=6e-10  Score=104.49  Aligned_cols=109  Identities=17%  Similarity=0.319  Sum_probs=87.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCcc-ccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~-~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...+++|+|..|+|||||+-.+.-..|.. ..||.|  |..+++.+++ .+++.+|||+|+++++.+.+.|+..      
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRg------   77 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRG------   77 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecC------
Confidence            34789999999999999999998888854 579999  7788888875 5788899999999999888888887      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           +++.++++| ++.+.+..+..|+..+.   .....+..+.++|
T Consensus        78 -----A~AAivvYDit~~~SF~~aK~WvkeL~---~~~~~~~vialvG  117 (200)
T KOG0092|consen   78 -----ANAAIVVYDITDEESFEKAKNWVKELQ---RQASPNIVIALVG  117 (200)
T ss_pred             -----CcEEEEEEecccHHHHHHHHHHHHHHH---hhCCCCeEEEEec
Confidence                 999999999 88888777777655443   3333455666776

>KOG0098|consensus

Probab=98.95  E-value=1.6e-09  Score=101.02  Aligned_cols=108  Identities=18%  Similarity=0.307  Sum_probs=88.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.++.++|..|+|||+||..++..+| +.+..|.|  |-...+.+++ .+++++||++|++.++.+.+.++..       
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~-------   78 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRG-------   78 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhcc-------
Confidence            47899999999999999999999998 67778999  4456777776 6899999999999999999999988       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          +.+.++|+| +.++.+..+..||..+..   .......+.++|
T Consensus        79 ----a~GalLVydit~r~sF~hL~~wL~D~rq---~~~~NmvImLiG  118 (216)
T KOG0098|consen   79 ----AAGALLVYDITRRESFNHLTSWLEDARQ---HSNENMVIMLIG  118 (216)
T ss_pred             ----CcceEEEEEccchhhHHHHHHHHHHHHH---hcCCCcEEEEEc
Confidence                999999999 888888887776654432   223445566665

>cd04158 ARD1 ARD1 subfamily

Probab=98.95  E-value=1.9e-09  Score=100.85  Aligned_cols=88  Identities=33%  Similarity=0.663  Sum_probs=70.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|+.|||||||++.+.+..+..+.||.|+....+.+.+ ..+.+||++|+..++..+..++..           ++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~-~~i~l~Dt~G~~~~~~~~~~~~~~-----------ad   68 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKN-LKFTIWDVGGKHKLRPLWKHYYLN-----------TQ   68 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECC-EEEEEEECCCChhcchHHHHHhcc-----------CC
Confidence            478999999999999999999877667899986666676665 999999999998887777776655           89


Q ss_pred             eeeEEee-cCcccccCCcccc
Q psy16304        278 CQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~~l  297 (537)
                      ++++++| ++...+.++..++
T Consensus        69 ~ii~V~D~s~~~s~~~~~~~~   89 (169)
T cd04158          69 AVVFVVDSSHRDRVSEAHSEL   89 (169)
T ss_pred             EEEEEEeCCcHHHHHHHHHHH
Confidence            9999999 6665555444433

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.95  E-value=2.1e-09  Score=103.61  Aligned_cols=90  Identities=22%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC-C-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG-N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~-g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +++++|++|||||||++.+.+..+ ..+.||.|..  ...+.++ + .+.+.+||++|++.++.+++.++..        
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~--------   73 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRG--------   73 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCC--------
Confidence            689999999999999999998776 4578998843  4456665 3 5789999999999888777777666        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++.+.++.+..++.
T Consensus        74 ---a~~~ilv~D~t~~~s~~~~~~~~~   97 (201)
T cd04107          74 ---AVGAIIVFDVTRPSTFEAVLKWKA   97 (201)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence               899999999 77766666554443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.94  E-value=1.7e-09  Score=100.32  Aligned_cols=86  Identities=29%  Similarity=0.659  Sum_probs=69.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|..|+|||||++.+....+..+.||.|+....+.... +.+.+||++|+.+++..+..++..           ++
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~-----------ad   69 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN-----------TQ   69 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC-----------CC
Confidence            689999999999999999976666567899997776677664 999999999998888888777666           89


Q ss_pred             eeeEEee-cCcccccCCcc
Q psy16304        278 CQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~  295 (537)
                      ++++++| ++..++.++.+
T Consensus        70 ~~i~v~D~~~~~s~~~~~~   88 (159)
T cd04150          70 GLIFVVDSNDRERIGEARE   88 (159)
T ss_pred             EEEEEEeCCCHHHHHHHHH
Confidence            9999999 55554444433

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00879 Sar1 Sar1 subfamily

Probab=98.94  E-value=2.3e-09  Score=101.88  Aligned_cols=84  Identities=31%  Similarity=0.574  Sum_probs=67.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++|+|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|+..++..|..++..          
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~-~~~~l~D~~G~~~~~~~~~~~~~~----------   86 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGN-IKFKTFDLGGHEQARRLWKDYFPE----------   86 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence            356789999999999999999999766556677776666888886 999999999998877777666555          


Q ss_pred             ccceeeEEee-cCcccc
Q psy16304        275 SRTCQVYLIM-CGVHQV  290 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~  290 (537)
                       ++++++++| ++..++
T Consensus        87 -ad~iilV~D~~~~~s~  102 (190)
T cd00879          87 -VDGIVFLVDAADPERF  102 (190)
T ss_pred             -CCEEEEEEECCcHHHH
Confidence             788999999 554443

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04155 Arl3 Arl3 subfamily

Probab=98.94  E-value=4.1e-09  Score=98.33  Aligned_cols=81  Identities=36%  Similarity=0.747  Sum_probs=67.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++|+|++|||||||++.|.|..+..+.|+.|++...+.+.+ ..+.+||++|+..+...+..++..          
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~-~~~~~~D~~G~~~~~~~~~~~~~~----------   81 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDG-FKLNVWDIGGQRAIRPYWRNYFEN----------   81 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcC----------
Confidence            357799999999999999999999877667899998888888886 999999999987776555555443          


Q ss_pred             ccceeeEEee-cCc
Q psy16304        275 SRTCQVYLIM-CGV  287 (537)
Q Consensus       275 ~~~~il~v~D-s~~  287 (537)
                       ++++++++| ++.
T Consensus        82 -~~~ii~v~D~~~~   94 (173)
T cd04155          82 -TDCLIYVIDSADK   94 (173)
T ss_pred             -CCEEEEEEeCCCH
Confidence             788899999 443

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.92  E-value=3e-09  Score=100.39  Aligned_cols=90  Identities=28%  Similarity=0.622  Sum_probs=72.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      -.+++++|++|+|||||++.+....+..+.||.|+....+.+.+ ..+.+||++|+..++..|..++..           
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~-----------   80 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKN-ISFTVWDVGGQDKIRPLWRHYYTN-----------   80 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECC-EEEEEEECCCChhhHHHHHHHhCC-----------
Confidence            47899999999999999999975556557799997766677664 999999999999888888887766           


Q ss_pred             cceeeEEee-cCcccccCCcccc
Q psy16304        276 RTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       276 ~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                      ++++++++| ++.+.+++..+++
T Consensus        81 ad~ii~v~D~t~~~s~~~~~~~l  103 (175)
T smart00177       81 TQGLIFVVDSNDRDRIDEAREEL  103 (175)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHH
Confidence            899999999 6665554444433

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.92  E-value=2.2e-09  Score=98.80  Aligned_cols=83  Identities=33%  Similarity=0.679  Sum_probs=68.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|++|+|||||++.+.+..+....||.|++...+.+.+...+.+||++|+..++..+..++..           ++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-----------~~   69 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLEN-----------TD   69 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhcc-----------CC
Confidence            4799999999999999999998876667999987777777666899999999998877777666655           88


Q ss_pred             eeeEEee-cCccccc
Q psy16304        278 CQVYLIM-CGVHQVS  291 (537)
Q Consensus       278 ~il~v~D-s~~~~~~  291 (537)
                      ++++++| ++...+.
T Consensus        70 ~iv~v~D~~~~~~~~   84 (160)
T cd04156          70 GLVYVVDSSDEARLD   84 (160)
T ss_pred             EEEEEEECCcHHHHH
Confidence            9999999 5544333

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.92  E-value=4.7e-09  Score=95.20  Aligned_cols=78  Identities=35%  Similarity=0.692  Sum_probs=64.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      ++|+|++|||||||++.|.+.++ ..+.|+.|+....+..++ +.+.+||++|+..++..+..++..           ++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~-----------~d   69 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGN-VTLKVWDLGGQPRFRSMWERYCRG-----------VN   69 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECC-EEEEEEECCCCHhHHHHHHHHHhc-----------CC
Confidence            79999999999999999999877 556788887766777665 899999999998888777766655           88


Q ss_pred             eeeEEee-cCcc
Q psy16304        278 CQVYLIM-CGVH  288 (537)
Q Consensus       278 ~il~v~D-s~~~  288 (537)
                      ++++++| ++..
T Consensus        70 ~ii~v~d~~~~~   81 (159)
T cd04159          70 AIVYVVDAADRT   81 (159)
T ss_pred             EEEEEEECCCHH
Confidence            8999999 4443

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.91  E-value=3.7e-10  Score=107.40  Aligned_cols=208  Identities=13%  Similarity=0.080  Sum_probs=125.9

Q ss_pred             ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      +.+++.++++.+.|++-||||.+|+|||-+-+.|+|.    ....=-+|.+...+++ +++  +.... .+.|.+..+.+
T Consensus        20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v----~kdnW~vTADR~Rf~~-idL--L~L~P-r~RRk~ig~~i   91 (330)
T COG4170          20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGV----NKDNWRVTADRMRFDD-IDL--LRLSP-RERRKLVGHNV   91 (330)
T ss_pred             eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcc----cccceEEEhhhccccc-chh--hcCCh-HHhhhhhccch
Confidence            4567778889999999999999999999999999997    4333224444566554 332  22221 24456677788


Q ss_pred             hccccCCCCCCCccceeeEEeecCcc----cccCCcccc---cccCcCCc-cccCCccEEEeccCccC--ccchhhhhcC
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVH----QVSGIPDEL---TSATHLPL-VDFRSVPILVLGLDNAG--KSSIIKRILG  332 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~----~~~~l~~~l---~~~~~l~~-~~~~~~~L~llGl~~~g--Ks~li~~LSg  332 (537)
                      +++||++.          .+.|.++.    ..+++..+-   .|...+.- ..++-..+-.+|+.+..  ..+++++|..
T Consensus        92 sMIFQeP~----------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe  161 (330)
T COG4170          92 SMIFQEPQ----------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE  161 (330)
T ss_pred             hhhhcCch----------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence            99999986          12331111    111111110   01000000 01112223356664432  3566889999


Q ss_pred             CCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc
Q psy16304        333 EPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS  403 (537)
Q Consensus       333 G~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~  403 (537)
                      |+-|+|    .+|.|+.. .  |.+++-|  |+.++..     ..++....+..+++|+++ +||..+...-+  +-++.
T Consensus       162 GE~QKV----MIA~A~An-q--PrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~-s~Dl~~is~W~d~i~VlY  233 (330)
T COG4170         162 GECQKV----MIAIALAN-Q--PRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLI-SHDLQMISQWADKINVLY  233 (330)
T ss_pred             Ccceee----eeehhhcc-C--CceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEE-cccHHHHHHHhhheEEEE
Confidence            999999    77777775 3  8999999  7777433     233345555566778888 99988776533  66676


Q ss_pred             CCcEEEEecccch
Q psy16304        404 CNCQVYLISAKNL  416 (537)
Q Consensus       404 ~G~ii~~g~nkdl  416 (537)
                      -|.-+..+...++
T Consensus       234 CGQ~~ESa~~e~l  246 (330)
T COG4170         234 CGQTVESAPSEEL  246 (330)
T ss_pred             ecccccccchhHH
Confidence            6665555544454

>cd04136 Rap_like Rap-like subfamily

Probab=98.91  E-value=3e-09  Score=97.88  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|++|||||||++.+.+..+ ..+.||.+ +....+.+++ ...+.+||++|+++++.++..++..         
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKN---------   72 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhc---------
Confidence            4799999999999999999998766 44567776 3345566665 4677899999999888777776665         


Q ss_pred             CccceeeEEee-cCcccccCCccccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                        ++++++++| ++...++.+..++..+
T Consensus        73 --~~~~ilv~d~~~~~s~~~~~~~~~~i   98 (163)
T cd04136          73 --GQGFVLVYSITSQSSFNDLQDLREQI   98 (163)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence              889999999 6665555554444333

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04121 Rab40 Rab40 subfamily

Probab=98.90  E-value=3.9e-09  Score=101.28  Aligned_cols=107  Identities=17%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+++|..|+|||||++.+.+..+ ..+.|+.|  +....+.+++ .+.+.+||++|+++++.++..++..       
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~-------   78 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG-------   78 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC-------
Confidence            36899999999999999999998766 44556776  3345566665 4788999999999988877776665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          ++++++++| ++...++++..++..+...    ....++.++|
T Consensus        79 ----ad~illVfD~t~~~Sf~~~~~w~~~i~~~----~~~~piilVG  117 (189)
T cd04121          79 ----AQGIILVYDITNRWSFDGIDRWIKEIDEH----APGVPKILVG  117 (189)
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEE
Confidence                999999999 7888887777665554321    1245666776

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04122 Rab14 Rab14 subfamily

Probab=98.90  E-value=3.5e-09  Score=98.48  Aligned_cols=91  Identities=18%  Similarity=0.291  Sum_probs=70.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|+.|+|||||++.+.+..+ ..+.||.|...  ..+.+++ .+++.+||++|++.++..+..++..        
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------   74 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRG--------   74 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC--------
Confidence            4799999999999999999998876 45667877433  3455665 4688999999999888777766665        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++.+.++.+..++.
T Consensus        75 ---~~~~ilv~d~~~~~s~~~~~~~~~   98 (166)
T cd04122          75 ---AAGALMVYDITRRSTYNHLSSWLT   98 (166)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence               899999999 76666666555543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=98.90  E-value=2.7e-09  Score=101.94  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +++++|.+|||||||++.+.+..+ ..+.||.|.. +..+.+++ .+.+.+||++|+++++..+..++..          
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~----------   70 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIRE----------   70 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHh----------
Confidence            489999999999999999998766 4466777722 33455655 3568899999999888877777776          


Q ss_pred             ccceeeEEee-cCcccccCCcccccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDELTS  299 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l~~  299 (537)
                       ++++++++| ++...++.+..++..
T Consensus        71 -ad~~ilv~d~~~~~s~~~~~~~~~~   95 (190)
T cd04144          71 -GEGFILVYSITSRSTFERVERFREQ   95 (190)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHH
Confidence             899999999 666555555544433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.88  E-value=9.8e-10  Score=127.53  Aligned_cols=96  Identities=10%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCce---EEEEEe--cCchh--hHHHHH---HHHHhcCCEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY---EVFLYD--LGGSE--DFRTIW---KQYLGTVSQT  382 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p---~lllLD--T~Gl~--~~~~l~---~~~~~~~~~v  382 (537)
                      +..+|+........+.+|||||+||+    .++++++. +  |   ++++||  |+|++  ....++   ..+.+. +.+
T Consensus       814 L~~vgL~~l~l~~~~~tLSgGEkQRl----~LAraL~~-~--p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~T  885 (943)
T PRK00349        814 LVDVGLGYIKLGQPATTLSGGEAQRV----KLAKELSK-R--STGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNT  885 (943)
T ss_pred             HHHCCCCcccccCCcccCCHHHHHHH----HHHHHHhc-C--CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCE
Confidence            34566654222344789999999999    99999986 3  5   899999  99992  223333   343333 345


Q ss_pred             EEEEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      ++++ +|+......++ ++.+      ++|+++..|++.++.
T Consensus       886 VIii-tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        886 VVVI-EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             EEEE-ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence            6666 78877766555 7777      689999988887764

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.88  E-value=5.7e-09  Score=96.79  Aligned_cols=93  Identities=20%  Similarity=0.348  Sum_probs=70.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.|+.|.  ....+.+++ .+.+.+||++|++.+...+..++..        
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--------   74 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG--------   74 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCc--------
Confidence            4799999999999999999998766 345677773  334555555 4678999999998887777666655        


Q ss_pred             CCccceeeEEee-cCcccccCCccccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                         ++++++++| ++.+.+.++..++..+
T Consensus        75 ---~~~ii~v~d~~~~~s~~~l~~~~~~~  100 (166)
T cd01869          75 ---AHGIIIVYDVTDQESFNNVKQWLQEI  100 (166)
T ss_pred             ---CCEEEEEEECcCHHHHHhHHHHHHHH
Confidence               899999999 6666666666555443

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.88  E-value=1.7e-10  Score=115.46  Aligned_cols=68  Identities=9%  Similarity=0.058  Sum_probs=42.9

Q ss_pred             chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC  397 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~  397 (537)
                      ..+.+||+|++|++    ++++++..  ..+ |+++++|  |++++..  ..+++.+.+. .+.+++++ +|+.+..+.+
T Consensus       162 ~~~~~lS~G~~qr~----~la~al~~~~~~~-~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~i-SH~~~~~~~~  235 (251)
T cd03273         162 ESLTELSGGQRSLV----ALSLILALLLFKP-APMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV-SLKEGMFNNA  235 (251)
T ss_pred             ccccccCHHHHHHH----HHHHHHHHhhccC-CCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECCHHHHHhC
Confidence            34789999999999    88887753  122 7999999  8898332  2222333221 23455555 7776555544


Q ss_pred             h
Q psy16304        398 Q  398 (537)
Q Consensus       398 ~  398 (537)
                      +
T Consensus       236 d  236 (251)
T cd03273         236 N  236 (251)
T ss_pred             C
Confidence            3

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.88  E-value=5.6e-09  Score=101.27  Aligned_cols=92  Identities=22%  Similarity=0.264  Sum_probs=73.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC------CcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG------NKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~------g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +++++|.+|+|||||++.+.+..| ..+.||.|.+  ...+.++      ..+.+.+||++|++.++.++..++..    
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~----   77 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQ----   77 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCc----
Confidence            689999999999999999999877 5577899843  3345553      24789999999999888777777766    


Q ss_pred             CCCCCCccceeeEEee-cCcccccCCccccccc
Q psy16304        269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                             ++++++|+| ++...++++..|+..+
T Consensus        78 -------ad~iIlVyDvtn~~Sf~~l~~W~~ei  103 (202)
T cd04102          78 -------VNGIILVHDLTNRKSSQNLQRWSLEA  103 (202)
T ss_pred             -------CCEEEEEEECcChHHHHHHHHHHHHH
Confidence                   899999999 8888888777766544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01865 Rab3 Rab3 subfamily

Probab=98.88  E-value=4.1e-09  Score=98.00  Aligned_cols=93  Identities=22%  Similarity=0.352  Sum_probs=71.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|||||||++.+.+.++ ..+.|+.|..  ..++..++ ...+.+||++|+++++..+..++..        
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~--------   73 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRG--------   73 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccC--------
Confidence            3699999999999999999999887 4567888843  34455554 4789999999998887776666555        


Q ss_pred             CCccceeeEEee-cCcccccCCccccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                         ++++++++| ++.+.++.+.+++..+
T Consensus        74 ---~~~~l~v~d~~~~~s~~~~~~~~~~i   99 (165)
T cd01865          74 ---AMGFILMYDITNEESFNAVQDWSTQI   99 (165)
T ss_pred             ---CcEEEEEEECCCHHHHHHHHHHHHHH
Confidence               899999999 6666666665555443

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.88  E-value=5.1e-09  Score=97.50  Aligned_cols=107  Identities=21%  Similarity=0.355  Sum_probs=76.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|+|||||++.+.+.++ ..+.|+.|...  ..+.+++ .+.+.+||++|++.+...+..++..        
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~--------   75 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRG--------   75 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCC--------
Confidence            5799999999999999999999877 55678888433  4566665 4688999999998877666665554        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++.+.+..+..++..+...   .....++.++|
T Consensus        76 ---ad~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~  115 (167)
T cd01867          76 ---AMGIILVYDITDEKSFENIRNWMRNIEEH---ASEDVERMLVG  115 (167)
T ss_pred             ---CCEEEEEEECcCHHHHHhHHHHHHHHHHh---CCCCCcEEEEE
Confidence               899999999 6666666555544433221   12234555555

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.88  E-value=4.4e-09  Score=96.89  Aligned_cols=90  Identities=20%  Similarity=0.371  Sum_probs=68.5

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|++|+|||||++.+++.++ ..+.|+.|+..  ..+.+++ .+.+.+||++|++.+...+..++..         
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKD---------   72 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhcc---------
Confidence            689999999999999999999876 56678888543  3455554 5788999999998777666665554         


Q ss_pred             CccceeeEEee-cCcccccCCccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                        ++++++++| ++...+..+..++.
T Consensus        73 --~d~~ilv~D~~~~~s~~~~~~~~~   96 (168)
T cd04119          73 --TQGVLLVYDVTDRQSFEALDSWLK   96 (168)
T ss_pred             --CCEEEEEEECCCHHHHHhHHHHHH
Confidence              889999999 66655555544443

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=98.88  E-value=5.8e-09  Score=96.83  Aligned_cols=106  Identities=20%  Similarity=0.332  Sum_probs=75.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|++|+|||||++.+.+..+ ..+.||.|..  ...+.+++ .+.+.+||++|+.++...+..++..         
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~---------   72 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRR---------   72 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcC---------
Confidence            689999999999999999988766 4567888843  34566665 4678999999998877666665555         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++.+.++.+..++..+...   .....++.++|
T Consensus        73 --~~~~i~v~d~~~~~sf~~~~~~~~~~~~~---~~~~~~iilvg  112 (161)
T cd04117          73 --AQGIFLVYDISSERSYQHIMKWVSDVDEY---APEGVQKILIG  112 (161)
T ss_pred             --CcEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEE
Confidence              899999999 7766666665544433222   12234556665

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0079|consensus

Probab=98.88  E-value=1.7e-09  Score=97.10  Aligned_cols=93  Identities=23%  Similarity=0.377  Sum_probs=81.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +..|+|.+|+|||+|+-++....| ..+..|.|  |...++.++| .+++.+||++|+++++.+...++..         
T Consensus        10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg---------   80 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG---------   80 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC---------
Confidence            357899999999999999998877 45788899  6677888887 6899999999999999999988887         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccC
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSAT  301 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~  301 (537)
                        +++++.|+| +..+.+.++..||+.+.
T Consensus        81 --thgv~vVYDVTn~ESF~Nv~rWLeei~  107 (198)
T KOG0079|consen   81 --THGVIVVYDVTNGESFNNVKRWLEEIR  107 (198)
T ss_pred             --CceEEEEEECcchhhhHhHHHHHHHHH
Confidence              999999999 88899999998876653

>cd04140 ARHI_like ARHI subfamily

Probab=98.88  E-value=5.2e-09  Score=97.27  Aligned_cols=110  Identities=16%  Similarity=0.293  Sum_probs=72.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee-eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~-t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.|+.+. .+..+..++ ...+.+||++|++++..++...+..         
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISK---------   72 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhc---------
Confidence            4799999999999999999998876 445677662 233344443 4678999999998877665555444         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...++++..++..+...........++.++|
T Consensus        73 --~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~  115 (165)
T cd04140          73 --GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG  115 (165)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence              788999999 666555555444433332211111334555554

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0084|consensus

Probab=98.87  E-value=7e-09  Score=97.74  Aligned_cols=108  Identities=21%  Similarity=0.375  Sum_probs=89.6

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .+++++|.+++||+.++.+|++|- ..+...|+|+.-.  .+..++ ..++.+|||+|+++++.+...|++.++|+|+|+
T Consensus        10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy   89 (205)
T KOG0084|consen   10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY   89 (205)
T ss_pred             EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence            467899999999999999999998 7778888885433  232233 478899999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhhc------CCcEEEEeccc-chhh
Q psy16304        387 HSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLSN  418 (537)
Q Consensus       387 dshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~~  418 (537)
                      |.++++++..+..|+-+      .+.+....+|+ |+.+
T Consensus        90 DiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~  128 (205)
T KOG0084|consen   90 DITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE  128 (205)
T ss_pred             EcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence            99999999999987765      44567777888 7744

>KOG0087|consensus

Probab=98.87  E-value=2e-09  Score=102.39  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=89.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...++.|+|.+|+|||-||.+++..+| ....+|.|  |....+.++| .++.++||++|+++++.+...++..      
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg------   86 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG------   86 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc------
Confidence            467799999999999999999999988 45679999  4455677776 5788999999999999888888777      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           +.+.++|+| +.+..++++..||..+   +........+.++|
T Consensus        87 -----AvGAllVYDITr~~Tfenv~rWL~EL---Rdhad~nivimLvG  126 (222)
T KOG0087|consen   87 -----AVGALLVYDITRRQTFENVERWLKEL---RDHADSNIVIMLVG  126 (222)
T ss_pred             -----cceeEEEEechhHHHHHHHHHHHHHH---HhcCCCCeEEEEee
Confidence                 999999999 7888888888766554   34455567777876

>KOG0394|consensus

Probab=98.87  E-value=3.1e-09  Score=98.90  Aligned_cols=123  Identities=17%  Similarity=0.310  Sum_probs=90.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      -+|.|+|.+|+|||+|++.+...+| ..+..|.|  |..+++.+++ -+.+++|||+|++++.++...++..        
T Consensus        10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRg--------   81 (210)
T KOG0394|consen   10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRG--------   81 (210)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecC--------
Confidence            6799999999999999999998777 45789999  7788888886 5789999999999987654444444        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCc-cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPL-VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL  338 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~-~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv  338 (537)
                         +|..++++| ....+++++..|-+.+-.... ......+..++|-    |..    +++|..+.+
T Consensus        82 ---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN----KiD----~~~~~~r~V  138 (210)
T KOG0394|consen   82 ---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN----KID----VDGGKSRQV  138 (210)
T ss_pred             ---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc----ccc----CCCCcccee
Confidence               999999999 777777777655433321111 2224567778873    333    667775555

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.86  E-value=6.5e-09  Score=95.49  Aligned_cols=84  Identities=31%  Similarity=0.682  Sum_probs=69.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|+.|+|||||++.+++.++....|+.|++...+.+.+ ..+.+||++|+..++..+...+..           ++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~-----------~~   68 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-VSFTVWDVGGQDKIRPLWKHYYEN-----------TN   68 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECC-EEEEEEECCCChhhHHHHHHHhcc-----------CC
Confidence            589999999999999999999877777899998888888875 999999999998887777766665           89


Q ss_pred             eeeEEee-cCcccccCC
Q psy16304        278 CQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l  293 (537)
                      ++++++| ++...+...
T Consensus        69 ~~i~v~D~~~~~~~~~~   85 (158)
T cd00878          69 GIIFVVDSSDRERIEEA   85 (158)
T ss_pred             EEEEEEECCCHHHHHHH
Confidence            9999999 554444333

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.85  E-value=6.8e-09  Score=101.84  Aligned_cols=108  Identities=19%  Similarity=0.390  Sum_probs=78.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEE--ECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~--i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...++++||.+|+|||||++.+....+ ..+.||.|++...+.  .++ .+.+.+||++|++.++.++..++..      
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------   85 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH------   85 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccc------
Confidence            457899999999999999999877666 567899996655443  333 5799999999998887777666555      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           ++++++++| ++...+..+..|+..+...    ....++.++|
T Consensus        86 -----~~~~ilvfD~~~~~s~~~i~~w~~~i~~~----~~~~piilvg  124 (219)
T PLN03071         86 -----GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCG  124 (219)
T ss_pred             -----ccEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCcEEEEE
Confidence                 889999999 7777666665554443221    1234566665

>cd01868 Rab11_like Rab11-like

Probab=98.85  E-value=7.7e-09  Score=95.73  Aligned_cols=91  Identities=16%  Similarity=0.315  Sum_probs=68.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|||||||++.+.+..+ ..+.|+.|.  ....+.+++ ...+.+||++|++.+..++..++..        
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~--------   75 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRG--------   75 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCC--------
Confidence            4799999999999999999998876 356788884  344566665 3678999999998877666655554        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++...+..+..++.
T Consensus        76 ---~~~~i~v~d~~~~~s~~~~~~~~~   99 (165)
T cd01868          76 ---AVGALLVYDITKKQTFENVERWLK   99 (165)
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHHH
Confidence               788999999 65555555554443

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0095|consensus

Probab=98.84  E-value=6.8e-09  Score=93.29  Aligned_cols=96  Identities=21%  Similarity=0.356  Sum_probs=78.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++.|||.-|+|||+|++.++..-| .+...|.|  |-.+++.++| .+++++||++|++++|.+...++..        
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrs--------   79 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRS--------   79 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhh--------
Confidence            5799999999999999999997633 34445666  6778899987 6899999999999999999999887        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcC
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHL  303 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l  303 (537)
                         ++++++++| +-...+.-+.+|+..++.+
T Consensus        80 ---ahalilvydiscqpsfdclpewlreie~y  108 (213)
T KOG0095|consen   80 ---AHALILVYDISCQPSFDCLPEWLREIEQY  108 (213)
T ss_pred             ---cceEEEEEecccCcchhhhHHHHHHHHHH
Confidence               999999999 6666666667766555443

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.84  E-value=5.4e-10  Score=129.36  Aligned_cols=96  Identities=9%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             EEeccCccCccchhhhhcCCCceeeecccccccceecc-CCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEE
Q psy16304        314 LVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY-GNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLV  385 (537)
Q Consensus       314 ~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~-~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlV  385 (537)
                      ..+|+........+.+|||||+||+    .++++++.. .+ |++++||  |+|++  ....++   ..+.+. +.++++
T Consensus       813 ~~~gL~~l~l~~~~~tLSgGe~QRl----~LA~aL~~~~~~-p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIv  886 (924)
T TIGR00630       813 CDVGLGYIKLGQPATTLSGGEAQRI----KLAKELSKRSTG-RTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVV  886 (924)
T ss_pred             HHcCCCchhhcCccccCCHHHHHHH----HHHHHHhhcCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            3566654222444789999999999    999998862 13 7999999  99992  222333   344333 346666


Q ss_pred             EeCCCcchhhhhh-hhhh------cCCcEEEEecccch
Q psy16304        386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNL  416 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl  416 (537)
                      + +|+......++ ++.+      ++|+++..|++.++
T Consensus       887 i-~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       887 I-EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             E-eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            6 78877766555 7777      68899888776543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.84  E-value=8e-09  Score=97.19  Aligned_cols=85  Identities=27%  Similarity=0.609  Sum_probs=69.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|+|||||++.+++..+....||.|.+...+.+.+ ..+.+||++|+..++..+..++..          
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~----------   82 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKN-IRFLMWDIGGQESLRSSWNTYYTN----------   82 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECC-eEEEEEECCCCHHHHHHHHHHhhc----------
Confidence            356899999999999999999988777667889887777777775 999999999998887777666554          


Q ss_pred             ccceeeEEee-cCccccc
Q psy16304        275 SRTCQVYLIM-CGVHQVS  291 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~  291 (537)
                       ++++++++| ++.+.+.
T Consensus        83 -~d~vi~V~D~s~~~~~~   99 (174)
T cd04153          83 -TDAVILVIDSTDRERLP   99 (174)
T ss_pred             -CCEEEEEEECCCHHHHH
Confidence             899999999 5554433

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04176 Rap2 Rap2 subgroup

Probab=98.84  E-value=6.9e-09  Score=95.83  Aligned_cols=93  Identities=18%  Similarity=0.299  Sum_probs=69.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|.+|+|||||++.+.+..+ ..+.||.+ +....+.+++ ...+.+||++|+++++.++..++..         
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN---------   72 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhh---------
Confidence            4699999999999999988887766 44566665 4445666765 4578899999998888777776665         


Q ss_pred             CccceeeEEee-cCcccccCCccccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                        ++++++++| ++...+.++..++..+
T Consensus        73 --ad~~i~v~d~~~~~s~~~~~~~~~~~   98 (163)
T cd04176          73 --GQGFIVVYSLVNQQTFQDIKPMRDQI   98 (163)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence              899999999 6666665555544443

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=98.84  E-value=1.1e-08  Score=95.31  Aligned_cols=91  Identities=19%  Similarity=0.368  Sum_probs=68.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|++|+|||||++.+.+..+ ..+.|+.|+.  ...+.+++ .+.+.+||++|+++++.++..++..       
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-------   77 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRG-------   77 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcC-------
Confidence            46799999999999999999998766 3456777743  34556654 4678899999998888777766655       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++.+.++.+..+.
T Consensus        78 ----~d~~i~v~d~~~~~s~~~~~~~~  100 (170)
T cd04116          78 ----SDCCLLTFAVDDSQSFQNLSNWK  100 (170)
T ss_pred             ----CCEEEEEEECCCHHHHHhHHHHH
Confidence                788999999 6565555554433

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.83  E-value=8.7e-09  Score=94.34  Aligned_cols=88  Identities=18%  Similarity=0.296  Sum_probs=65.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.||.|.. ...+.+++ ...+.+||++|+++++.++..++..         
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~---------   72 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---------   72 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhc---------
Confidence            3689999999999999999998776 4566777722 33455555 3568889999999888877777666         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++...+.++..
T Consensus        73 --~~~~i~v~~~~~~~s~~~~~~   93 (162)
T cd04138          73 --GEGFLCVFAINSRKSFEDIHT   93 (162)
T ss_pred             --CCEEEEEEECCCHHHHHHHHH
Confidence              888999999 55544444433

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01861 Rab6 Rab6 subfamily

Probab=98.83  E-value=1e-08  Score=94.22  Aligned_cols=89  Identities=20%  Similarity=0.346  Sum_probs=66.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|+.|+|||||++.+.+..+ ....|+.|.  ....+.+++ ...+.+||++|+..++..+..++..         
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~---------   72 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRD---------   72 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc---------
Confidence            689999999999999999999876 345677773  344566665 3578999999998887766666655         


Q ss_pred             CccceeeEEee-cCcccccCCcccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                        ++++++++| ++...+..+..++
T Consensus        73 --~~~ii~v~d~~~~~s~~~~~~~~   95 (161)
T cd01861          73 --SSVAVVVYDITNRQSFDNTDKWI   95 (161)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHH
Confidence              889999999 6555555544443

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04128 Spg1 Spg1p

Probab=98.83  E-value=6.9e-09  Score=98.78  Aligned_cols=92  Identities=17%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|.+|+|||||++.+.+..| ..+.||.|...  ..+.+++ .+.+.+||++|++.++.++..++..         
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~---------   72 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCND---------   72 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcC---------
Confidence            689999999999999999988777 45789998443  5666765 4788999999998887766665555         


Q ss_pred             CccceeeEEee-cCcccccCCccccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                        ++++++++| ++...+.++..++..+
T Consensus        73 --a~~iilv~D~t~~~s~~~i~~~~~~~   98 (182)
T cd04128          73 --AVAILFMFDLTRKSTLNSIKEWYRQA   98 (182)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence              899999999 7777766665555433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0060|consensus

Probab=98.83  E-value=1.8e-09  Score=115.85  Aligned_cols=260  Identities=16%  Similarity=0.079  Sum_probs=135.0

Q ss_pred             cccccccceeeeeeeccchh--hhhHHHHHhhhcccccccccccccccCccccccccCC--CCCCchhHHHHHHHHHHH-
Q psy16304         74 PIEMVEHKMLRDVVLYNMYK--AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSD--DPAPTFEVCIVSLLVHLM-  148 (537)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~l~~~m-  148 (537)
                      |-+=+.|..+--+|++|.|-  --+....++.....++..-.+=.+|+-++++.-.+..  .++-+.+-    .....+ 
T Consensus       340 ~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~----~~~~E~~  415 (659)
T KOG0060|consen  340 VYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEE----EELGEAE  415 (659)
T ss_pred             ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhh----hhhhhhh
Confidence            44444566666678888653  4456677777777766666666667666655332221  11111100    000000 


Q ss_pred             --------------HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHH
Q psy16304        149 --------------RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIK  214 (537)
Q Consensus       149 --------------~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~  214 (537)
                                    .+.++.+++++-.     .+.          + .-.+..++++.+..|..+.|.||||+|||+|++
T Consensus       416 ~~l~~~~G~~~~~~~Dn~i~~e~v~l~-----tPt----------~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlR  479 (659)
T KOG0060|consen  416 WGLSLPPGSGKAEPADNAIEFEEVSLS-----TPT----------N-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLR  479 (659)
T ss_pred             hccCCCCCCcccccccceEEeeeeeec-----CCC----------C-CceeeeeeeeEecCCCeEEEECCCCCchhHHHH
Confidence                          0112222222221     000          0 122455788999999999999999999999999


Q ss_pred             HHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe---ecCcccc
Q psy16304        215 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI---MCGVHQV  290 (537)
Q Consensus       215 ~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~---Ds~~~~~  290 (537)
                      .|.|.    -.-+.|    .+....       |- +.        ..+=++||.|+.-.. ..+-+++=.   |.+....
T Consensus       480 vlggL----Wp~~~G----~l~k~~-------~~-~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~  535 (659)
T KOG0060|consen  480 VLGGL----WPSTGG----KLTKPT-------DG-GP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSA  535 (659)
T ss_pred             HHhcc----cccCCC----eEEecc-------cC-CC--------CceEEecCCCCccccchhheeeccCccccccccCC
Confidence            99998    555777    555332       10 00        124456777653221 222222110   0000000


Q ss_pred             --cCCcccccccCcCCccccCCccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch
Q psy16304        291 --SGIPDELTSATHLPLVDFRSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS  365 (537)
Q Consensus       291 --~~l~~~l~~~~~l~~~~~~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl  365 (537)
                        +.+...+++.   ..    .-.+... |++..........||+|++||+    ++||-..+ .  |++-+||  |+.+
T Consensus       536 ~d~~i~r~Le~v---~L----~hl~~r~ggld~~~~~dW~dvLS~GEqQRL----a~ARLfy~-k--Pk~AiLDE~TSAv  601 (659)
T KOG0060|consen  536 SDEDILRILENV---QL----GHLLEREGGLDQQVDWDWMDVLSPGEQQRL----AFARLFYH-K--PKFAILDECTSAV  601 (659)
T ss_pred             CHHHHHHHHHHh---hh----hhHHHHhCCCCchhhccHHhhcCHHHHHHH----HHHHHHhc-C--CceEEeechhhhc
Confidence              0011111111   00    0001111 2221122334678999999999    99999987 5  8999999  8888


Q ss_pred             h-hHHHHHHHHHhcCCEEEEEEeCCCcc
Q psy16304        366 E-DFRTIWKQYLGTVSQTLLVSHSLSGR  392 (537)
Q Consensus       366 ~-~~~~l~~~~~~~~~~vIlVvdshd~~  392 (537)
                      . ......-...++.+.+.+.+ .|...
T Consensus       602 ~~dvE~~~Yr~~r~~giT~iSV-gHRkS  628 (659)
T KOG0060|consen  602 TEDVEGALYRKCREMGITFISV-GHRKS  628 (659)
T ss_pred             cHHHHHHHHHHHHHcCCeEEEe-ccHHH
Confidence            3 22223333445556677777 77654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.83  E-value=9.3e-09  Score=98.06  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=78.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+++++|..|+|||||++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.++..++..       
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~-------   76 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD-------   76 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC-------
Confidence            346799999999999999999998877 56788988332 3456665 5789999999998887766655554       


Q ss_pred             CCCccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          ++++++++| +++..++++ ..|+..+...   . ...++.++|
T Consensus        77 ----ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~---~-~~~piilVg  116 (182)
T cd04172          77 ----SDAVLICFDISRPETLDSVLKKWKGEIQEF---C-PNTKMLLVG  116 (182)
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHHHHHHHH---C-CCCCEEEEe
Confidence                899999999 777777665 4444433222   1 235566776

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=98.83  E-value=8.5e-09  Score=97.87  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=75.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|++|+|||||++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.+...++..         
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~---------   72 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPD---------   72 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCC---------
Confidence            3699999999999999999998877 56778887322 3455665 4788999999998776554444443         


Q ss_pred             CccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++.+.++++ ..|+..+...   . ...++.++|
T Consensus        73 --a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~---~-~~~~iilVg  112 (178)
T cd04131          73 --SDAVLICFDISRPETLDSVLKKWRGEIQEF---C-PNTKVLLVG  112 (178)
T ss_pred             --CCEEEEEEECCChhhHHHHHHHHHHHHHHH---C-CCCCEEEEE
Confidence              889999999 777777664 4444333222   1 235566676

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.82  E-value=9.3e-09  Score=97.12  Aligned_cols=105  Identities=22%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      ++++||.+|+|||||++.+.+..| ..+.||.|.... .+.+++ .+.+.+||++|++++..++..++..          
T Consensus         3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~----------   72 (175)
T cd01874           3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQ----------   72 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhccc----------
Confidence            689999999999999999998877 667899884332 455554 4678899999998877665555544          


Q ss_pred             ccceeeEEee-cCcccccCCcc-cccccCcCCccccCCccEEEec
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD-ELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~-~l~~~~~l~~~~~~~~~L~llG  317 (537)
                       ++++++++| ++++.++++.. ++..+...    ....++.++|
T Consensus        73 -a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~----~~~~piilvg  112 (175)
T cd01874          73 -TDVFLVCFSVVSPSSFENVKEKWVPEITHH----CPKTPFLLVG  112 (175)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEE
Confidence             899999999 77666665542 33333211    1235566665

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01866 Rab2 Rab2 subfamily

Probab=98.82  E-value=1.2e-08  Score=95.22  Aligned_cols=91  Identities=15%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|||||||++.+.+..+ ....|+.|.+.  ..+.+++ ...+.+||++|++++..++..++..        
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------   76 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG--------   76 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc--------
Confidence            4799999999999999999999866 44567777443  3455554 4688999999998777666555554        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++...+..+..++.
T Consensus        77 ---~d~il~v~d~~~~~s~~~~~~~~~  100 (168)
T cd01866          77 ---AAGALLVYDITRRETFNHLTSWLE  100 (168)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence               889999999 66655555554443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PTZ00369 Ras-like protein; Provisional

Probab=98.81  E-value=1e-08  Score=97.90  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+++++|.+|+|||||++.+.+..+ ..+.||.|.+ ...+.+++ .+.+.+||++|+++++.++..++..       
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~-------   76 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT-------   76 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc-------
Confidence            357899999999999999999998766 4567887733 23455665 4678899999999988877777666       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++.+.++.+..+..
T Consensus        77 ----~d~iilv~D~s~~~s~~~~~~~~~  100 (189)
T PTZ00369         77 ----GQGFLCVYSITSRSSFEEIASFRE  100 (189)
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                899999999 66666555554443

>cd04125 RabA_like RabA-like subfamily

Probab=98.81  E-value=1.2e-08  Score=97.07  Aligned_cols=92  Identities=18%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCcc-ccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIIS-LVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~-~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +|+++|+.|+|||||++.+.+..+.. +.||.|..  ...+.+++ .+.+.+||++|++.+...+...+..         
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~---------   72 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRG---------   72 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccC---------
Confidence            68999999999999999999988853 77888843  34566655 4678899999998777666666555         


Q ss_pred             CccceeeEEee-cCcccccCCccccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                        ++++++++| ++.+.+..+..++..+
T Consensus        73 --~d~iilv~d~~~~~s~~~i~~~~~~i   98 (188)
T cd04125          73 --AHGYLLVYDVTDQESFENLKFWINEI   98 (188)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence              899999999 6666666555544433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01875 RhoG RhoG subfamily

Probab=98.81  E-value=1.1e-08  Score=98.00  Aligned_cols=106  Identities=18%  Similarity=0.261  Sum_probs=77.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|.+|+|||||+..+....| ..+.||.|... ..+.+++ .+.+.+||++|+++++.++..++..         
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~---------   74 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQ---------   74 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccC---------
Confidence            5799999999999999999998877 56789998432 2345555 4788999999999998777776665         


Q ss_pred             CccceeeEEee-cCcccccCCcc-cccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD-ELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~-~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...++++.. +...+...    ....++.++|
T Consensus        75 --a~~~ilvydit~~~Sf~~~~~~w~~~i~~~----~~~~piilvg  114 (191)
T cd01875          75 --TNVFIICFSIASPSSYENVRHKWHPEVCHH----CPNVPILLVG  114 (191)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEE
Confidence              899999999 77777766642 33322211    1245666665

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0075|consensus

Probab=98.81  E-value=1.5e-09  Score=97.47  Aligned_cols=115  Identities=30%  Similarity=0.575  Sum_probs=88.4

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      +++.+..-.+.+||.-+||||||++.++...+ ....||.||+..++.-+. +.+.+||.+|+..++..|..+...    
T Consensus        14 ~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgn-vtiklwD~gGq~rfrsmWerycR~----   88 (186)
T KOG0075|consen   14 NSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRG----   88 (186)
T ss_pred             HHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCc-eEEEEEecCCCccHHHHHHHHhhc----
Confidence            34444567789999999999999999987655 345799999998888665 999999999999999999999988    


Q ss_pred             CCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEecc
Q psy16304        269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGL  318 (537)
Q Consensus       269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl  318 (537)
                             .+++++++| ++.+.......++..+  +...+-...+++++|-
T Consensus        89 -------v~aivY~VDaad~~k~~~sr~EL~~L--L~k~~l~gip~LVLGn  130 (186)
T KOG0075|consen   89 -------VSAIVYVVDAADPDKLEASRSELHDL--LDKPSLTGIPLLVLGN  130 (186)
T ss_pred             -------CcEEEEEeecCCcccchhhHHHHHHH--hcchhhcCCcEEEecc
Confidence                   899999999 6666555555544333  1222344566777764

>KOG0070|consensus

Probab=98.81  E-value=8.3e-09  Score=96.47  Aligned_cols=113  Identities=29%  Similarity=0.575  Sum_probs=96.2

Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+..+.++|++++||++++..|-.|+.....||+++....+...+ ..+.+||..|++..+.+|+.|++..+++|+|+|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn-~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvD   93 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKN-ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVD   93 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcc-eEEEEEecCCCcccccchhhhccCCcEEEEEEe
Confidence            4566788999999999999999999998888999999999998887 999999999999999999999999999999999


Q ss_pred             CCCcchhhhhh---hhhhc----CCcEEEEeccc-chhhhhc
Q psy16304        388 SLSGRPDDRCQ---VYLMS----CNCQVYLISAK-NLSNGFK  421 (537)
Q Consensus       388 shd~~~~~~~~---i~ll~----~G~ii~~g~nk-dl~~~~~  421 (537)
                      +.|++.+....   ..++.    .+.++...+|| |+..++.
T Consensus        94 S~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   94 SSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             CCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence            99999887655   22222    36677778888 6655444

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.81  E-value=1.6e-09  Score=108.31  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=44.2

Q ss_pred             chhhhhcCCCceeeecccccccceecc--CCceEEEEEe--cCchhhH-HH----HHHHHHhcCCEEEEEEeCCCcchhh
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVEY--GNKYEVFLYD--LGGSEDF-RT----IWKQYLGTVSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~~--~e~p~lllLD--T~Gl~~~-~~----l~~~~~~~~~~vIlVvdshd~~~~~  395 (537)
                      ..+.+||+|+++++    +++++++..  .+ |+++++|  |+|++.. ..    .+..+.+. +.+++++ +|+.....
T Consensus       151 ~~~~~LS~G~k~rl----~la~al~~~~~~~-p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~i-sH~~~~~~  223 (247)
T cd03275         151 RDMDNLSGGEKTMA----ALALLFAIHSYQP-APFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVI-SLKEEFFS  223 (247)
T ss_pred             hhHHHcCHHHHHHH----HHHHHHHHhccCC-CCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEE-ECCHHHHh
Confidence            34689999999999    888888752  23 7899999  8898432 22    22333222 3466666 78866655


Q ss_pred             hhh
Q psy16304        396 RCQ  398 (537)
Q Consensus       396 ~~~  398 (537)
                      .++
T Consensus       224 ~~d  226 (247)
T cd03275         224 KAD  226 (247)
T ss_pred             hCC
Confidence            444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd04113 Rab4 Rab4 subfamily

Probab=98.80  E-value=1.3e-08  Score=93.71  Aligned_cols=90  Identities=18%  Similarity=0.393  Sum_probs=67.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|++|+|||||++.+.+..+ ....++.|.  ....+.+++ ...+.+||++|++.+...++.++..         
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~---------   72 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRG---------   72 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcC---------
Confidence            689999999999999999998766 445677773  334556655 4688999999998777666665554         


Q ss_pred             CccceeeEEee-cCcccccCCccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                        ++++++++| ++...+.++..++.
T Consensus        73 --~~~~i~v~d~~~~~s~~~~~~~~~   96 (161)
T cd04113          73 --AAGALLVYDITNRTSFEALPTWLS   96 (161)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHH
Confidence              889999999 66665555554443

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.80  E-value=1.3e-08  Score=95.73  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=78.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|..|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|+.+++.++..++..         
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~---------   73 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRC---------   73 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhc---------
Confidence            4799999999999999999998777 45678887333 3466665 4678999999999888887777666         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...+..+.++...+....  .....++.++|
T Consensus        74 --~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvg  114 (172)
T cd04141          74 --GEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVG  114 (172)
T ss_pred             --CCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEE
Confidence              899999999 77776666654433332221  11245666665

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.80  E-value=1e-08  Score=97.46  Aligned_cols=86  Identities=30%  Similarity=0.632  Sum_probs=67.8

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC----CcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG----NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~----g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+++++|++|||||||++.+.+..+....||.|++...+.+.    .++.+.+||++|++.++..|..++..       
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------   75 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRC-------   75 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhcc-------
Confidence            4679999999999999999999887755678888776665552    25889999999998888777776655       


Q ss_pred             CCCccceeeEEee-cCcccccC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSG  292 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~  292 (537)
                          ++++++++| ++...+..
T Consensus        76 ----~d~ii~v~D~~~~~~~~~   93 (183)
T cd04152          76 ----TDGIVFVVDSVDVERMEE   93 (183)
T ss_pred             ----CCEEEEEEECCCHHHHHH
Confidence                899999999 55444433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.80  E-value=1.1e-08  Score=94.20  Aligned_cols=107  Identities=20%  Similarity=0.401  Sum_probs=79.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      ||+++|++|+|||||++.+.+..+ ..+.||.|...  ..+.+++ .+.+.+||++|++.+.......+..         
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~---------   71 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRN---------   71 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTT---------
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            689999999999999999998776 55778887443  4455554 5789999999998777665555555         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEecc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGL  318 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl  318 (537)
                        ++++++++| ++.+.++.+..++..+....   ....++.++|.
T Consensus        72 --~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~---~~~~~iivvg~  112 (162)
T PF00071_consen   72 --SDAIIIVFDVTDEESFENLKKWLEEIQKYK---PEDIPIIVVGN  112 (162)
T ss_dssp             --ESEEEEEEETTBHHHHHTHHHHHHHHHHHS---TTTSEEEEEEE
T ss_pred             --cccccccccccccccccccccccccccccc---cccccceeeec
Confidence              889999999 77777777776665543322   13456777763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04110 Rab35 Rab35 subfamily

Probab=98.80  E-value=1e-08  Score=98.88  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=69.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+++|+.|+|||||++.+.+..+ ..+.||.|+.  ...+.++| .+.+.+||++|++.++..+..++..        
T Consensus         7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~--------   78 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG--------   78 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC--------
Confidence            5799999999999999999998877 3467888843  34555555 4678999999998887777666655        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++.+.++.+..++.
T Consensus        79 ---a~~iilv~D~~~~~s~~~~~~~~~  102 (199)
T cd04110          79 ---THGVIVVYDVTNGESFVNVKRWLQ  102 (199)
T ss_pred             ---CcEEEEEEECCCHHHHHHHHHHHH
Confidence               788999999 66665555554443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.80  E-value=1.1e-08  Score=96.14  Aligned_cols=90  Identities=21%  Similarity=0.335  Sum_probs=69.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|..|+|||||++.+.+..| ..+.||.|...  ..+.++| ...+.+||++|++++..++..++..         
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRG---------   72 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcC---------
Confidence            689999999999999999999877 56789988443  4455555 5689999999998887776666655         


Q ss_pred             CccceeeEEee-cCcccccCCccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                        ++++++++| ++...+..+..++.
T Consensus        73 --ad~~ilv~d~~~~~s~~~~~~~~~   96 (170)
T cd04108          73 --AQAIIIVFDLTDVASLEHTRQWLE   96 (170)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHHH
Confidence              899999999 56555555544443

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.79  E-value=1.5e-09  Score=104.91  Aligned_cols=77  Identities=6%  Similarity=-0.172  Sum_probs=49.4

Q ss_pred             cchhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH-----HHHHHHHHhc--CCEEEEEEeCCCcc
Q psy16304        324 SSIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT--VSQTLLVSHSLSGR  392 (537)
Q Consensus       324 s~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~--~~~vIlVvdshd~~  392 (537)
                      ...+.+||+||++++    ++++++..  ..+ |+++++|  |+|++..     ..++..+.+.  ...+++++ +|+..
T Consensus       104 ~~~~~~lS~G~k~r~----~ia~al~~~~~~~-p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~-th~~~  177 (198)
T cd03276         104 VRDVKTLSGGERSFS----TVCLLLSLWEVME-SPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT-PQDIS  177 (198)
T ss_pred             CCcccccChhHHHHH----HHHHHHHHhcccC-CCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE-CCccc
Confidence            445789999999999    88887741  133 8999999  8888322     2222333332  22456666 78888


Q ss_pred             hhhhhh-hhhhcCCc
Q psy16304        393 PDDRCQ-VYLMSCNC  406 (537)
Q Consensus       393 ~~~~~~-i~ll~~G~  406 (537)
                      .....+ +.++..++
T Consensus       178 ~i~~~d~v~~~~~~~  192 (198)
T cd03276         178 GLASSDDVKVFRMKD  192 (198)
T ss_pred             ccccccceeEEEecC
Confidence            776654 55555443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.79  E-value=5.8e-09  Score=100.87  Aligned_cols=74  Identities=7%  Similarity=0.022  Sum_probs=45.2

Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH----HHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI----WKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l----~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                      +..||+|++++.    .++.+. . +  |+++++|  ++|++..  ..+    ++.+.+ .+.+++++ +|+......++
T Consensus        89 ~s~fs~g~~~~~----~i~~~~-~-~--p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~-tH~~~l~~~~d  158 (200)
T cd03280          89 LSTFSSHMKNIA----RILQHA-D-P--DSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIAT-THYGELKAYAY  158 (200)
T ss_pred             cchHHHHHHHHH----HHHHhC-C-C--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEE-CCHHHHHHHHh
Confidence            457999998887    555443 2 4  8999999  7787322  222    233333 34455555 77654433333


Q ss_pred             -hhhhcCCcEEEE
Q psy16304        399 -VYLMSCNCQVYL  410 (537)
Q Consensus       399 -i~ll~~G~ii~~  410 (537)
                       +..+++|.+...
T Consensus       159 ~~~~l~~g~l~~~  171 (200)
T cd03280         159 KREGVENASMEFD  171 (200)
T ss_pred             cCCCeEEEEEEEe
Confidence             777778887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.78  E-value=1.4e-08  Score=93.85  Aligned_cols=88  Identities=20%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +|+++|++|||||||++.+.+..+ ..+.|+.+ .....+.+++ .+.+.+||++|++++...+..++..          
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~----------   71 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT----------   71 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhh----------
Confidence            689999999999999999998766 34556665 2234455554 4678899999999887777666655          


Q ss_pred             ccceeeEEee-cCcccccCCccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                       ++++++++| ++.+.++.+..+
T Consensus        72 -~~~~i~v~d~~~~~s~~~~~~~   93 (164)
T smart00173       72 -GEGFLLVYSITDRQSFEEIKKF   93 (164)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHH
Confidence             889999999 555554444443

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0086|consensus

Probab=98.78  E-value=8.9e-09  Score=92.90  Aligned_cols=107  Identities=20%  Similarity=0.375  Sum_probs=82.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++.++|+.|.|||+||..+....+ -....|.|  |-..-|.++| .+++++||++|++++|...+.++..        
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG--------   81 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG--------   81 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc--------
Confidence            5689999999999999999987766 34567888  4445566665 5789999999999999999999888        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         +.+.++|+| ++++.++.+..|+....   ..+.....+.++|
T Consensus        82 ---AAGAlLVYD~TsrdsfnaLtnWL~DaR---~lAs~nIvviL~G  121 (214)
T KOG0086|consen   82 ---AAGALLVYDITSRDSFNALTNWLTDAR---TLASPNIVVILCG  121 (214)
T ss_pred             ---ccceEEEEeccchhhHHHHHHHHHHHH---hhCCCcEEEEEeC
Confidence               889999999 88888877776655433   2333445555655

>PLN00023 GTP-binding protein; Provisional

Probab=98.78  E-value=1.3e-08  Score=104.61  Aligned_cols=96  Identities=19%  Similarity=0.328  Sum_probs=76.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC--------------cEEEEEeecCCCchhhHH
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN--------------KYEVFLYDLGGSEDFRTI  257 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g--------------~~~i~~~D~~G~~~~r~~  257 (537)
                      ...+|+|+|.+|+|||||++.+.+..| ..+.||.|.+.  ..+.+++              .+.+.+||++|++.++.+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            457899999999999999999998877 45679999543  4555531              367999999999999888


Q ss_pred             HHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccC
Q psy16304        258 WKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSAT  301 (537)
Q Consensus       258 ~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~  301 (537)
                      +..++..           ++++++|+| ++...++++..|+..+.
T Consensus       100 ~~~yyr~-----------AdgiILVyDITdr~SFenL~kWl~eI~  133 (334)
T PLN00023        100 RSLFYSQ-----------INGVIFVHDLSQRRTKTSLQKWASEVA  133 (334)
T ss_pred             hHHhccC-----------CCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence            8777666           899999999 77777777766665543

>PLN03110 Rab GTPase; Provisional

Probab=98.78  E-value=1.8e-08  Score=98.63  Aligned_cols=93  Identities=17%  Similarity=0.292  Sum_probs=71.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...+++++|+.|+|||||++.+.+..+ ..+.||.|..  ...+.+++ .+.+.+||++|++++...+..++..      
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------   84 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG------   84 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC------
Confidence            346899999999999999999998876 3567888844  45566665 4689999999998887776666655      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                           ++++++++| ++...++.+..++.
T Consensus        85 -----~~~~ilv~d~~~~~s~~~~~~~~~  108 (216)
T PLN03110         85 -----AVGALLVYDITKRQTFDNVQRWLR  108 (216)
T ss_pred             -----CCEEEEEEECCChHHHHHHHHHHH
Confidence                 889999999 66655555544443

>cd04118 Rab24 Rab24 subfamily

Probab=98.78  E-value=1.6e-08  Score=96.53  Aligned_cols=90  Identities=17%  Similarity=0.285  Sum_probs=66.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCc--cccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPII--SLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +|+++|++|+|||||++.+.+..+.  .+.||.|.  ....+.+++ .+.+.+||++|+.+++.++..++..        
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~--------   73 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRG--------   73 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCC--------
Confidence            6899999999999999999987773  37788883  334566665 3567799999998776555544443        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++...++.+..++.
T Consensus        74 ---~d~iilv~d~~~~~s~~~~~~~~~   97 (193)
T cd04118          74 ---AKAAIVCYDLTDSSSFERAKFWVK   97 (193)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence               889999999 66555544444443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.78  E-value=1e-08  Score=95.78  Aligned_cols=105  Identities=19%  Similarity=0.389  Sum_probs=72.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEE--CC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEY--GN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|+.|||||||++.+....+ ..+.||.|.....+.+  ++ .+.+.+||++|++.+...+..++..         
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIG---------   72 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcC---------
Confidence            689999999999999999986655 4577888865544443  22 4789999999997765444444333         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++.+.+..+..++..+....    ...++.++|
T Consensus        73 --~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piiiv~  111 (166)
T cd00877          73 --GQCAIIMFDVTSRVTYKNVPNWHRDLVRVC----GNIPIVLCG  111 (166)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEE
Confidence              899999999 66666665555444433221    145555554

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.78  E-value=1.9e-08  Score=94.08  Aligned_cols=92  Identities=23%  Similarity=0.412  Sum_probs=67.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhh-HHHHhhhhccccCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLG  271 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l  271 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.|+.|+.  ...+.+++ .+.+.+||++|+++++ .++..++..       
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-------   75 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN-------   75 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC-------
Confidence            4799999999999999999998766 3466777733  34555665 4789999999998776 344444433       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTS  299 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~  299 (537)
                          ++++++++| ++.+.+..+..++..
T Consensus        76 ----~d~~i~v~d~~~~~s~~~~~~~~~~  100 (170)
T cd04115          76 ----VHAVVFVYDVTNMASFHSLPSWIEE  100 (170)
T ss_pred             ----CCEEEEEEECCCHHHHHhHHHHHHH
Confidence                889999999 666666655554433

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04127 Rab27A Rab27a subfamily

Probab=98.78  E-value=1.5e-08  Score=95.19  Aligned_cols=93  Identities=19%  Similarity=0.378  Sum_probs=69.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC-----------CcEEEEEeecCCCchhhHHHHhhh
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG-----------NKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~-----------g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.||.|..  ...+.+.           ..+.+.+||++|+++++..+..++
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF   84 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence            5799999999999999999998766 4457777733  2334432           247889999999988887776666


Q ss_pred             hccccCCCCCCCccceeeEEee-cCcccccCCccccccc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                      ..           ++++++++| ++.+.+..+..++..+
T Consensus        85 ~~-----------~~~~i~v~d~~~~~s~~~~~~~~~~i  112 (180)
T cd04127          85 RD-----------AMGFLLIFDLTNEQSFLNVRNWMSQL  112 (180)
T ss_pred             CC-----------CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            65           899999999 6666666665554433

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.77  E-value=1.6e-08  Score=92.98  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEEC--C-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYG--N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~--g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +++++|++|+|||||++.+.+..+ ..+.|+.|...  ..+.+.  + .+++.+||++|+++++..+..++..       
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-------   74 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG-------   74 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC-------
Confidence            689999999999999999998766 45678888443  344444  2 5789999999998888777766665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++.+.+..+..++
T Consensus        75 ----~~~~v~v~d~~~~~s~~~l~~~~   97 (162)
T cd04106          75 ----AQACILVFSTTDRESFEAIESWK   97 (162)
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHH
Confidence                889999999 6665555554433

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01864 Rab19 Rab19 subfamily

Probab=98.77  E-value=1.6e-08  Score=93.77  Aligned_cols=94  Identities=19%  Similarity=0.339  Sum_probs=69.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|||||||++.+.+..+ ..+.++.|.  ....+.+++ .+.+.+||++|++.+...+...+..       
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-------   75 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS-------   75 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc-------
Confidence            36799999999999999999987665 345677773  345566665 3588999999998887666666655       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                          ++++++++| ++...+..+..++..+
T Consensus        76 ----~d~~llv~d~~~~~s~~~~~~~~~~i  101 (165)
T cd01864          76 ----ANGAIIAYDITRRSSFESVPHWIEEV  101 (165)
T ss_pred             ----CCEEEEEEECcCHHHHHhHHHHHHHH
Confidence                899999999 6655555555544433

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=98.77  E-value=1.4e-08  Score=96.28  Aligned_cols=105  Identities=19%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +++++|..|+|||+|+..+....| ..+.||.|... ..+.+++ .+++.+||++|+++++.++..++..          
T Consensus         3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~----------   72 (176)
T cd04133           3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRG----------   72 (176)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCC----------
Confidence            689999999999999999998888 46789988332 3455665 4788999999999887666555555          


Q ss_pred             ccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304        275 SRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                       ++++++++| ++++.++++ ..|+..+...   . ...++.++|
T Consensus        73 -a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~---~-~~~piilvg  112 (176)
T cd04133          73 -ADVFVLAFSLISRASYENVLKKWVPELRHY---A-PNVPIVLVG  112 (176)
T ss_pred             -CcEEEEEEEcCCHHHHHHHHHHHHHHHHHh---C-CCCCEEEEE
Confidence             899999999 777777765 3444433221   1 245677776

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.77  E-value=2.3e-09  Score=129.94  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceec-cCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-YGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~-~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIl  384 (537)
                      +..+|+........+.+|||||+||+    .++++++. ..+ |++++||  |+|++     .+..++..+.+. ..+|+
T Consensus       793 L~~vGL~~l~l~q~~~tLSGGE~QRV----~LAraL~~~~~~-P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVI  866 (1809)
T PRK00635        793 LCSLGLDYLPLGRPLSSLSGGEIQRL----KLAYELLAPSKK-PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVV  866 (1809)
T ss_pred             HHHcCCcchhhcCccccCCHHHHHHH----HHHHHHhhcCCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence            34567765422445889999999999    99999973 123 8999999  99993     222333444433 34566


Q ss_pred             EEeCCCcchhhhhh-hhhhc------CCcEEEEecccchh
Q psy16304        385 VSHSLSGRPDDRCQ-VYLMS------CNCQVYLISAKNLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~-i~ll~------~G~ii~~g~nkdl~  417 (537)
                      ++ +|+++....++ ++.|.      .|+++..|+++++.
T Consensus       867 iI-sHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        867 II-EHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             EE-eCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence            66 78888775444 66774      68899999888764

>cd04124 RabL2 RabL2 subfamily

Probab=98.76  E-value=1.7e-08  Score=93.51  Aligned_cols=89  Identities=18%  Similarity=0.300  Sum_probs=65.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|.+|+|||||++.+.+..+ ....++.|.+  ...+.+++ .+.+.+||++|++.++..+..++..         
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---------   72 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHK---------   72 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCC---------
Confidence            689999999999999999988766 3345565533  23444554 4688999999999888777766665         


Q ss_pred             CccceeeEEee-cCcccccCCcccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                        ++++++++| ++...+..+..++
T Consensus        73 --~d~~i~v~d~~~~~s~~~~~~~~   95 (161)
T cd04124          73 --AHACILVFDVTRKITYKNLSKWY   95 (161)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHH
Confidence              899999999 5555444444443

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04151 Arl1 Arl1 subfamily

Probab=98.76  E-value=3.1e-08  Score=91.27  Aligned_cols=78  Identities=36%  Similarity=0.724  Sum_probs=64.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++|+|++|+|||||++.+....+....||.|++...+.+.+ ..+.+||++|+..++..++.++..           ++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-----------~~   68 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGQTSIRPYWRCYYSN-----------TD   68 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECC-EEEEEEECCCCHHHHHHHHHHhcC-----------CC
Confidence            589999999999999999987766556788887766676664 899999999998888777776665           89


Q ss_pred             eeeEEee-cCc
Q psy16304        278 CQVYLIM-CGV  287 (537)
Q Consensus       278 ~il~v~D-s~~  287 (537)
                      ++++++| ++.
T Consensus        69 ~ii~v~d~~~~   79 (158)
T cd04151          69 AIIYVVDSTDR   79 (158)
T ss_pred             EEEEEEECCCH
Confidence            9999999 444

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.76  E-value=1.8e-08  Score=93.40  Aligned_cols=79  Identities=34%  Similarity=0.671  Sum_probs=61.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +++++|++|+|||||++.|++..       ...+.||.|.....+.+++ ..+.+||++|+..+...+...+..      
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~------   73 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-ARLKFWDLGGQESLRSLWDKYYAE------   73 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-EEEEEEECCCChhhHHHHHHHhCC------
Confidence            47899999999999999998642       1234567776666777775 999999999998887766666555      


Q ss_pred             CCCCccceeeEEee-cCcc
Q psy16304        271 GRPDSRTCQVYLIM-CGVH  288 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~  288 (537)
                           ++++++++| ++.+
T Consensus        74 -----~~~~v~vvd~~~~~   87 (167)
T cd04160          74 -----CHAIIYVIDSTDRE   87 (167)
T ss_pred             -----CCEEEEEEECchHH
Confidence                 889999999 4443

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04112 Rab26 Rab26 subfamily

Probab=98.76  E-value=2.1e-08  Score=95.92  Aligned_cols=90  Identities=22%  Similarity=0.383  Sum_probs=66.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +++|+|+.|||||||++.+.+..+.  .+.|+.|.+.  ..+.+++ .+.+.+||++|+.++...+..++..        
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------   73 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRD--------   73 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccC--------
Confidence            6899999999999999999987763  4567777333  3456665 4788999999998777666555544        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++.+.++++..++.
T Consensus        74 ---ad~~i~v~D~~~~~s~~~~~~~~~   97 (191)
T cd04112          74 ---AHALLLLYDITNKASFDNIRAWLT   97 (191)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence               889999999 66555555544443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=98.75  E-value=1.6e-08  Score=99.42  Aligned_cols=88  Identities=23%  Similarity=0.389  Sum_probs=69.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|.+|+|||||++.+.+..|..+.||.|.......+. .+.+.+||++|++.++.++..++..           ++
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~-~~~l~iwDt~G~e~~~~l~~~~~~~-----------ad   69 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWG-PYNISIWDTAGREQFHGLGSMYCRG-----------AA   69 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEee-EEEEEEEeCCCcccchhhHHHHhcc-----------CC
Confidence            68999999999999999999988866678888443333443 4889999999999888777766655           89


Q ss_pred             eeeEEee-cCcccccCCcccc
Q psy16304        278 CQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~~l  297 (537)
                      ++++++| ++...+.++..++
T Consensus        70 ~~IlV~Dvt~~~Sf~~l~~~~   90 (220)
T cd04126          70 AVILTYDVSNVQSLEELEDRF   90 (220)
T ss_pred             EEEEEEECCCHHHHHHHHHHH
Confidence            9999999 7766666655433

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04175 Rap1 Rap1 subgroup

Probab=98.75  E-value=2.1e-08  Score=92.85  Aligned_cols=92  Identities=20%  Similarity=0.285  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|.+|||||||++.+....+ ..+.||.|.+ ...+.+++ .+.+.+||++|++.++.++..++..         
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------   72 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKN---------   72 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhh---------
Confidence            4799999999999999999886555 4466777732 23555665 4677899999999888877777666         


Q ss_pred             CccceeeEEee-cCcccccCCcccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTS  299 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~  299 (537)
                        ++++++++| ++...++.+..++..
T Consensus        73 --~d~~ilv~d~~~~~s~~~~~~~~~~   97 (164)
T cd04175          73 --GQGFVLVYSITAQSTFNDLQDLREQ   97 (164)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHH
Confidence              889999999 655555555444433

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.74  E-value=3e-08  Score=91.56  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=66.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC--CC-ccccCceeee--eEEEEEC--CcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVGFN--RARVEYG--NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G~t--~~~i~i~--g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +++++|+.|||||||++.+.+.  .+ ..+.|+.|..  ...+.++  ....+.+||++|+..+..++...+..      
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------   75 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWES------   75 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCC------
Confidence            6899999999999999999753  44 4577888843  3344443  25889999999998777666666554      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                           ++++++++| ++.+.+.++..++.
T Consensus        76 -----~d~ii~v~d~~~~~s~~~~~~~~~   99 (164)
T cd04101          76 -----PSVFILVYDVSNKASFENCSRWVN   99 (164)
T ss_pred             -----CCEEEEEEECcCHHHHHHHHHHHH
Confidence                 899999999 66555554444443

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0092|consensus

Probab=98.74  E-value=2e-08  Score=94.32  Aligned_cols=110  Identities=19%  Similarity=0.356  Sum_probs=88.3

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCcee-eeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqr-vs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl  384 (537)
                      ...++.+||..++||++++-.+-.|+.-. ..+|++-  -...+..++ ..++.||||+|++++..+-+.|++.++++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            35678899999999999999999999433 4677772  222222233 4678899999999999999999999999999


Q ss_pred             EEeCCCcchhhhhhhhhhc------CCcEEEEeccc-chhh
Q psy16304        385 VSHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLSN  418 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~~  418 (537)
                      |+|.++.+++..+..|+.+      .+.++++.+|| ||.+
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~  124 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE  124 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence            9999999999999988865      34577888999 7754

>PLN03108 Rab family protein; Provisional

Probab=98.74  E-value=2.1e-08  Score=97.62  Aligned_cols=89  Identities=16%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|++|+|||||++.+++..+ ....|+.|++  ...+.+++ .+.+.+||++|++.+...+..++..        
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~--------   78 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG--------   78 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc--------
Confidence            5799999999999999999998876 3456777744  34566665 4678899999998877666665554        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++...+..+..+
T Consensus        79 ---ad~~vlv~D~~~~~s~~~l~~~  100 (210)
T PLN03108         79 ---AAGALLVYDITRRETFNHLASW  100 (210)
T ss_pred             ---CCEEEEEEECCcHHHHHHHHHH
Confidence               889999999 665555544443

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.74  E-value=2.1e-08  Score=92.31  Aligned_cols=91  Identities=18%  Similarity=0.312  Sum_probs=68.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|+.|||||||++.+.+.++. ...|+.|  +....+.+++ ++.+.+||++|++++...+..++..        
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--------   73 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRG--------   73 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhcc--------
Confidence            47899999999999999999998774 3678888  3345666665 5788999999998777666555544        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++.+.+.....++.
T Consensus        74 ---~~~~i~v~d~~~~~s~~~~~~~~~   97 (163)
T cd01860          74 ---AAAAIVVYDITSEESFEKAKSWVK   97 (163)
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHHH
Confidence               889999999 55555554444433

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=98.73  E-value=3.6e-08  Score=95.83  Aligned_cols=88  Identities=23%  Similarity=0.436  Sum_probs=69.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+++++|+.|+|||||++.+++..+..+.|+.|...  ..+.+++ .+.+.+||++|++.+..++..++..       
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------   85 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN-------   85 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc-------
Confidence            45789999999999999999999887777788888543  4455654 4688999999999888777776665       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++.+.+..+
T Consensus        86 ----~d~~vlv~D~~~~~sf~~~  104 (211)
T PLN03118         86 ----AQGIILVYDVTRRETFTNL  104 (211)
T ss_pred             ----CCEEEEEEECCCHHHHHHH
Confidence                899999999 655544443

>KOG0073|consensus

Probab=98.73  E-value=3.9e-08  Score=90.04  Aligned_cols=114  Identities=32%  Similarity=0.654  Sum_probs=94.9

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      +..+.++|++++||+.+++.|++.....++||.++....+..++ ..+.+||.+|+...+..|+.|++..++.|.|+|+.
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~-~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDss   94 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKG-YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSS   94 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecc-eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECc
Confidence            66788999999999999999999999999999999888777677 99999999999999999999999999999999999


Q ss_pred             Ccchhhhhh----hhhhc---CCcEEEEeccc-chhhhhccch
Q psy16304        390 SGRPDDRCQ----VYLMS---CNCQVYLISAK-NLSNGFKKSE  424 (537)
Q Consensus       390 d~~~~~~~~----i~ll~---~G~ii~~g~nk-dl~~~~~~~~  424 (537)
                      |+..++.+.    ..+.+   .|..+....|+ |+...+...+
T Consensus        95 D~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~  137 (185)
T KOG0073|consen   95 DRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE  137 (185)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH
Confidence            988887665    22222   46667777777 6643444333

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.73  E-value=2.6e-08  Score=91.71  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=65.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee-eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~-t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.|+.+. ....+.+++ ...+.+||++|++++..++..++..         
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---------   73 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRT---------   73 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhh---------
Confidence            5799999999999999999988765 445676662 233445555 3678899999999888777776665         


Q ss_pred             CccceeeEEee-cCcccccCCccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                        ++++++++| ++...+..+..+
T Consensus        74 --~~~~ilv~d~~~~~s~~~~~~~   95 (164)
T cd04145          74 --GEGFLLVFSVTDRGSFEEVDKF   95 (164)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHH
Confidence              889999999 555544444433

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.72  E-value=3.2e-08  Score=98.07  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..++++||+.|+|||+|++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.++..++..        
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~--------   84 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD--------   84 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC--------
Confidence            46899999999999999999998877 56788888322 2355555 5789999999999888777666655        


Q ss_pred             CCccceeeEEee-cCcccccC
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSG  292 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~  292 (537)
                         ++++++++| ++.+.+.+
T Consensus        85 ---ad~vIlVyDit~~~Sf~~  102 (232)
T cd04174          85 ---SDAVLLCFDISRPETVDS  102 (232)
T ss_pred             ---CcEEEEEEECCChHHHHH
Confidence               899999999 77776665

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.72  E-value=4e-08  Score=90.38  Aligned_cols=88  Identities=19%  Similarity=0.355  Sum_probs=65.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|++|||||||++.+.+..+ ....++.|+.  ...+.+++ .+.+.+||++|+..+...+...+..         
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~---------   72 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRG---------   72 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCC---------
Confidence            689999999999999999998766 4455777743  34556655 3688999999988776665555554         


Q ss_pred             CccceeeEEee-cCcccccCCccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                        ++++++++| ++...++.+..+
T Consensus        73 --~d~~ilv~d~~~~~s~~~~~~~   94 (164)
T smart00175       73 --AVGALLVYDITNRESFENLKNW   94 (164)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHH
Confidence              889999999 555555444433

Rab GTPases are implicated in vesicle trafficking.

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.70  E-value=3.3e-08  Score=98.93  Aligned_cols=92  Identities=20%  Similarity=0.319  Sum_probs=68.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +++++|..|+|||||++.+.+.+| ..+.||.+ +....+.+++ .+.+.+||++|++.+..++..++..          
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~----------   71 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILT----------   71 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhcc----------
Confidence            689999999999999999987766 45678877 4445566665 4678899999998776555544444          


Q ss_pred             ccceeeEEee-cCcccccCCccccccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                       ++++++++| ++.+.++++..++..+
T Consensus        72 -ad~iIlVfdv~~~~Sf~~i~~~~~~I   97 (247)
T cd04143          72 -GDVFILVFSLDNRESFEEVCRLREQI   97 (247)
T ss_pred             -CCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence             789999999 6666665555444333

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01862 Rab7 Rab7 subfamily

Probab=98.70  E-value=5.6e-08  Score=90.23  Aligned_cols=83  Identities=18%  Similarity=0.373  Sum_probs=61.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|++|||||||++.+.+..+ ....++.|  +....+.+.+ .+.+.+||++|+..+...+..++..         
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---------   72 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRG---------   72 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcC---------
Confidence            689999999999999999998765 34456666  3344566665 4667899999998777666665554         


Q ss_pred             CccceeeEEee-cCccccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVS  291 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~  291 (537)
                        ++++++++| .+...++
T Consensus        73 --~d~~i~v~d~~~~~~~~   89 (172)
T cd01862          73 --ADCCVLVYDVTNPKSFE   89 (172)
T ss_pred             --CCEEEEEEECCCHHHHH
Confidence              889999999 4444333

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	537
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-11
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-11
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-11
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-10
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-09
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-09
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-08
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		3e-09
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-09
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-08
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-09
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		5e-09
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-08
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		5e-09
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		5e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-08
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		7e-09
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		8e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-08
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-08
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		5e-08
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-08
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-08
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-08
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-08
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-08
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-08
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-08
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-08
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-08
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-08
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-08
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		7e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-07
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		8e-08
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		8e-08
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-07
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-07
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-06
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		3e-05
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		2e-04
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		4e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		5e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		5e-04
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		5e-04

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE I ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 15  RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 17  RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  
Sbjct: 17  RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           R+ W+ Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  R+ W
Sbjct: 4   LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGLKSLRSYW 62
Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
           + Y  +    + V  S   +    CQ  L S   +  L  A
Sbjct: 63  RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 103

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           R + IL+LGLD AGK++I+ R+    +++ +PT+GFN   V Y N K++V  +DLGG   
Sbjct: 1   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGQTS 58
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R  W+ Y       + V  S
Sbjct: 59  IRPYWRCYYSNTDAVIYVVDS 79

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVF 244
           P    LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFT 212
Query: 245 LYDLGGSEDFRTIWKQYL 262
           ++D+GG +  R +W+ Y 
Sbjct: 213 VWDVGGQDKIRPLWRHYF 230

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 221
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDS 242

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           R + IL+LGLD AGK++I+ R+    +++ +PT+GFN   V Y N K++V  +DLGG   
Sbjct: 3   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 60
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R  W+ Y       + V  S
Sbjct: 61  IRPYWRCYYSNTDAVIYVVDS 81

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
            LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+
Sbjct: 11  GLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQYL 262
           GG +  R +W+ Y 
Sbjct: 69  GGQDKIRPLWRHYF 82

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 16  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDS 94

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
            LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+
Sbjct: 10  GLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 67
Query: 249 GGSEDFRTIWKQYL 262
           GG +  R +W+ Y 
Sbjct: 68  GGQDKIRPLWRHYF 81

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 15  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 72
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 73  IRPLWRHYFQNTQGLIFVVDS 93

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+G
Sbjct: 15  LFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVG 72
Query: 250 GSEDFRTIWKQYL 262
           G +  R +W+ Y 
Sbjct: 73  GQDKIRPLWRHYF 85

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 19  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 76
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDS 97

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           R   IL+LGLD AGK++I+ R+    +++ +PT+GFN   V Y N K++V  +DLGG   
Sbjct: 6   REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 63
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R  W+ Y       + V  S
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDS 84

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 363
           L+  + + IL++GLD AGK+SI+ ++ LGE I++ +PT+GFN   VEY N     ++D+G
Sbjct: 12  LLGKKEMRILMVGLDAAGKTSILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVG 69
Query: 364 GSEDFRTIWKQYLGTVSQTLLVSHS 388
           G +  R +W+ Y       + V  S
Sbjct: 70  GQDKIRPLWRHYYQNTQAIIFVVDS 94

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           LF  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+G
Sbjct: 12  LFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVG 69
Query: 250 GSEDFRTIWKQYL 262
           G +  R +WK Y 
Sbjct: 70  GQDRIRPLWKHYF 82

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 16  KQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +WK Y       + V  S
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDS 94

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           LF  + V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN   VE+ N     ++D+G
Sbjct: 12  LFQKKDVRILMVGLDAAGKTTILYKVKLGE-VVTTIPTIGFNVETVEFRN-ISFTVWDVG 69
Query: 250 GSEDFRTIWKQY 261
           G +  R +W+ Y
Sbjct: 70  GQDKIRPLWRHY 81

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN   VE+ N     ++D+GG + 
Sbjct: 16  KDVRILMVGLDAAGKTTILYKVKLGE-VVTTIPTIGFNVETVEFRN-ISFTVWDVGGQDK 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDS 94

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
           +LF  + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+
Sbjct: 11  NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
           GG +  R++W+ Y
Sbjct: 69  GGQDRIRSLWRHY 81

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+GG + 
Sbjct: 16  KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
            R++W+ Y       + V  S     +DR ++
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDS-----NDRSRI 100

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
           +LF  + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+
Sbjct: 11  NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
           GG +  R++W+ Y
Sbjct: 69  GGQDRIRSLWRHY 81

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+GG + 
Sbjct: 16  KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
            R++W+ Y       + V  S     +DR ++
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDS-----NDRSRI 100

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
           +LF  + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+
Sbjct: 11  NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVECVQYCN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
           GG +  R++W+ Y
Sbjct: 69  GGQDRIRSLWRHY 81

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+GG + 
Sbjct: 16  KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVECVQYCN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R++W+ Y       + V  S
Sbjct: 74  IRSLWRHYYCNTEGVIFVVDS 94

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 310 SVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           S+ IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG +  
Sbjct: 2   SMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGLDKI 59
Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R +W+ Y       + V  S
Sbjct: 60  RPLWRHYFQNTQGLIFVVDS 79

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 319 DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 378
           DNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  R+ W+ Y  +
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFES 85
Query: 379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
               + V  S   +    CQ  L S   +  L  A
Sbjct: 86  TDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGA 120

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
           IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG +  R +
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPL 60
Query: 372 WKQYLGTVSQTLLVSHS 388
           W+ Y       + V  S
Sbjct: 61  WRHYFQNTQGLIFVVDS 77

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           +F  + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+G
Sbjct: 24  IFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVG 81
Query: 250 GSEDFRTIWKQYL 262
           G +  R +W+ Y 
Sbjct: 82  GQDKIRPLWRHYF 94

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN   VEY N     ++D+GG + 
Sbjct: 28  KQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDK 85
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
            R +W+ Y       + V  S
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDS 106

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           + V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 74
Query: 255 RTIWKQYL 262
           R  W+ Y 
Sbjct: 75  RPYWRSYF 82

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 74
Query: 369 RTIWKQYL 376
           R  W+ Y 
Sbjct: 75  RPYWRSYF 82

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           + V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 73
Query: 255 RTIWKQYL 262
           R  W+ Y 
Sbjct: 74  RPYWRSYF 81

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 73
Query: 369 RTIWKQYL 376
           R  W+ Y 
Sbjct: 74  RPYWRSYF 81

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
           V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R 
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKIRP 63
Query: 257 IWKQYL 262
            W+ Y 
Sbjct: 64  YWRSYF 69

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
           V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R 
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKIRP 63
Query: 371 IWKQYL 376
            W+ Y 
Sbjct: 64  YWRSYF 69

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
           IL++GLD AGK++++ ++ LGE +I+ +PT+GFN   V+Y N     ++D+GG +  R++
Sbjct: 3   ILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDRIRSL 60
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
           W+ Y       + V  S     +DR ++
Sbjct: 61  WRHYYRNTEGVIFVVDS-----NDRSRI 83

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
            +F  + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+
Sbjct: 7   KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDV 64
Query: 249 GGSEDFRTIWKQY 261
           GG +  R +W+ Y
Sbjct: 65  GGQDKIRPLWRHY 77

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+GG + 
Sbjct: 12  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 69
Query: 368 FRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
            R +W+ Y  GT     +V  +   R D+  Q
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
            +F  + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+
Sbjct: 6   KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDV 63
Query: 249 GGSEDFRTIWKQY 261
           GG +  R +W+ Y
Sbjct: 64  GGQDKIRPLWRHY 76

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+GG + 
Sbjct: 11  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 68
Query: 368 FRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
            R +W+ Y  GT     +V  +   R D+  Q
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
           V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R 
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGLRKIRP 63
Query: 257 IWKQYL 262
            W+ Y 
Sbjct: 64  YWRSYF 69

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
           V IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R 
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGLRKIRP 63
Query: 371 IWKQYL 376
            W+ Y 
Sbjct: 64  YWRSYF 69

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + + IL+LGLD AGK++I+ R+    +++  PT+GFN   + Y N  ++ ++DLGG    
Sbjct: 17  KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSI 75
Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R  W+ Y    +  + V  S
Sbjct: 76  RPYWRCYYADTAAVIFVVDS 95

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
           + + IL+LGLD AGK++I+ ++     ++ +PTVGFN   V Y N K+ V  +D+GG + 
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 378
Query: 368 FRTIWKQYLGTVSQTLL 384
            R +W+ Y  T +Q L+
Sbjct: 379 IRPLWRHYY-TGTQGLI 394

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +  R 
Sbjct: 3   ILXLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
           +W+ Y  GT     +V  +   R D+  Q
Sbjct: 60  LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYD 247
            +F  + + IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D
Sbjct: 7   KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WD 63
Query: 248 LGGSEDFRTIWKQY 261
           +GG +  R +W+ Y
Sbjct: 64  VGGLDKIRPLWRHY 77

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSE 366
           + + IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +
Sbjct: 12  KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLD 68
Query: 367 DFRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
             R +W+ Y  GT     +V  +   R D+  Q
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +  R 
Sbjct: 3   ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
           +W+ Y  GT     +V  +   R D+  Q
Sbjct: 60  LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +  R 
Sbjct: 3   ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
           +W+ Y  GT     +V  +   R D+  Q
Sbjct: 60  LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +  R 
Sbjct: 6   ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 62
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
           +W+ Y  GT     +V  +   R D+  Q
Sbjct: 63  LWRHYYTGTQGLIFVVDCADRDRIDEARQ 91

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
           IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN   V Y N K+ V  +D+GG +  R 
Sbjct: 5   ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 61
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
           +W+ Y  GT     +V  +   R D+  Q
Sbjct: 62  LWRHYYTGTQGLIFVVDCADRDRIDEARQ 90

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
           SLF  +   ++++GLDNAGK++I+ + L   ++   PT+G N   +   N +   ++D+G
Sbjct: 10  SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH-FLMWDIG 68
Query: 250 GSEDFRTIWKQY 261
           G E  R+ W  Y
Sbjct: 69  GQESLRSSWNTY 80

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
            ++++GLDNAGK++I+ + L   ++   PT+G N   +   N +   ++D+GG E  R+ 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH-FLMWDIGGQESLRSS 76
Query: 372 WKQYLGTVSQTLLVSHSL 389
           W  Y       +LV  S+
Sbjct: 77  WNTYYSNTEFIILVVDSI 94

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
           +LF    + + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D+
Sbjct: 25  ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDI 83
Query: 249 GGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVD 307
           GG   FR++W++Y   VS             VY++      ++    +EL +    P   
Sbjct: 84  GGQPRFRSMWERYCRGVSAI-----------VYMVDAADQEKIEASKNELHNLLDKP--Q 130
Query: 308 FRSVPILVLG 317
            + +P+LVLG
Sbjct: 131 LQGIPVLVLG 140

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
             + + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D+GG   
Sbjct: 30  EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 368 FRTIWKQYLGTVS 380
           FR++W++Y   VS
Sbjct: 89  FRSMWERYCRGVS 101

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 242
           +L      LF+ +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N   
Sbjct: 3   ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-R 61
Query: 243 VFLYDLGGSEDFRTIWKQY 261
             ++D+GG E  R+ W  Y
Sbjct: 62  FLMWDIGGQESLRSSWNTY 80

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
           L + +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG
Sbjct: 11  LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG 69
Query: 365 SEDFRTIWKQY 375
            E  R+ W  Y
Sbjct: 70  QESLRSSWNTY 80

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 242
           +L      LF+ +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N   
Sbjct: 3   ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-R 61
Query: 243 VFLYDLGGSEDFRTIWKQY 261
             ++D+GG E  R+ W  Y
Sbjct: 62  FLMWDIGGQESLRSSWNTY 80

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
           L + +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG
Sbjct: 11  LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG 69
Query: 365 SEDFRTIWKQY 375
            E  R+ W  Y
Sbjct: 70  QESLRSSWNTY 80

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
            + + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D+GG   F
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRF 80
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPI 313
           R++W++Y   VS             VY++      ++    +EL +    P    + +P+
Sbjct: 81  RSMWERYCRGVSAI-----------VYMVDAADQEKIEASKNELHNLLDKP--QLQGIPV 127
Query: 314 LVLG 317
           LVLG
Sbjct: 128 LVLG 131

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 361
           +P      + + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWD 73
Query: 362 LGGSEDFRTIWKQYLGTVS 380
           +GG   FR++W++Y   VS
Sbjct: 74  IGGQPRFRSMWERYCRGVS 92

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
            + + ++GL  +GK++ +  I  G+    ++PTVGFN  +V  GN   + ++D+GG   F
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN-VTIKIWDIGGQPRF 80
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPI 313
           R++W++Y   V+             VY+I      ++    +EL +    P    + +P+
Sbjct: 81  RSMWERYCRGVNAI-----------VYMIDAADREKIEASRNELHNLLDKP--QLQGIPV 127
Query: 314 LVLG 317
           LVLG
Sbjct: 128 LVLG 131

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 361
           +P      + + ++GL  +GK++ +  I  G+    ++PTVGFN  +V  GN   + ++D
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN-VTIKIWD 73
Query: 362 LGGSEDFRTIWKQY 375
           +GG   FR++W++Y
Sbjct: 74  IGGQPRFRSMWERY 87

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 362
           +P    +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+
Sbjct: 15  VPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDI 73
Query: 363 GGSEDFRTIWKQY 375
           GG E  R+ W  Y
Sbjct: 74  GGQESLRSSWNTY 86

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
            ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  R+ 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGGQESLRSS 81
Query: 258 WKQY 261
           W  Y
Sbjct: 82  WNTY 85

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
            ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  R+ 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGGQESLRSS 81
Query: 372 WKQY 375
           W  Y
Sbjct: 82  WNTY 85

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSE 366
           + +++ GLDN+GK++II ++  +P  S    +  TVG+N    E G +    ++D+GG++
Sbjct: 18  LQVVMCGLDNSGKTTIINQV--KPAQSSSKHITATVGYNVETFEKG-RVAFTVFDMGGAK 74
Query: 367 DFRTIWKQYLGTVSQTLLVSHS 388
            FR +W+ Y   +   + V  S
Sbjct: 75  KFRGLWETYYDNIDAVIFVVDS 96

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           +L LGLDNAGK++++  +  + + +L PT       +  GN K+  F  DLGG    R +
Sbjct: 4   LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 61
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           WK Y   V+  + +  +      D  +V L
Sbjct: 62  WKDYFPEVNGIVFLVDAADPERFDEARVEL 91

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           +L LGLDNAGK++++  +  + + +L PT       +  GN K+  F  DLGG    R +
Sbjct: 26  LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
           WK Y   V+  + +  +      D  +V L
Sbjct: 84  WKDYFPEVNGIVFLVDAADPERFDEARVEL 113

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGNKYEVFLYDLGGSE 252
           + V +L LGLDN+GK++II ++      S  ++PT+GF+  + +  +     ++D+ G  
Sbjct: 20  KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-SSSLSFTVFDMSGQG 78
Query: 253 DFRTIWKQY 261
            +R +W+ Y
Sbjct: 79  RYRNLWEHY 87

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGNKYEVFLYDLGGSE 366
           + V +L LGLDN+GK++II ++      S  ++PT+GF+  + +  +     ++D+ G  
Sbjct: 20  KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-SSSLSFTVFDMSGQG 78
Query: 367 DFRTIWKQY 375
            +R +W+ Y
Sbjct: 79  RYRNLWEHY 87

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 195 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
           +S  ++ LGLDNAGK++++  +    LG+ + +L PT   +      G  +  F  DLGG
Sbjct: 34  KSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 88
Query: 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310
            E  R +WK YL  ++             V+L+ C  H    +  ++     +      +
Sbjct: 89  HEQARRVWKNYLPAINGI-----------VFLVDCADHSRL-VESKVELNALMTDETISN 136
Query: 311 VPILVLG 317
           VPIL+LG
Sbjct: 137 VPILILG 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-18
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-19
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-18
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-19
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-19
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	7e-19
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	7e-19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-19
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	8e-19
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	6e-18
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-19
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-19
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-18
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-18
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-18
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-18
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	6e-18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	6e-18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	8e-17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	8e-17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-13
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-13
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-13
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-13
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-10
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	8e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	8e-04

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
             LF+ +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+
Sbjct: 9   WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDI 67

Query: 249 GGSEDFRTIWKQY 261
           GG E  R+ W  Y
Sbjct: 68  GGQESLRSSWNTY 80

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  R+ W
Sbjct: 19  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 77

Query: 373 KQY 375
             Y
Sbjct: 78  NTY 80

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
            +F  + + IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+G
Sbjct: 23  RIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVG 81

Query: 250 GSEDFRTIWKQY 261
           G +  R +W+ Y
Sbjct: 82  GQDKIRPLWRHY 93

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+GG +  R +W
Sbjct: 32  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLW 90

Query: 373 KQY 375
           + Y
Sbjct: 91  RHY 93

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  R+ W
Sbjct: 21  LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYW 79

Query: 259 KQY 261
           + Y
Sbjct: 80  RNY 82

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L+LGLDNAGK++I+K+  GE + ++ PT+GFN   +E+   +++ ++D+GG +  R+ W
Sbjct: 21  LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYW 79

Query: 373 KQY 375
           + Y
Sbjct: 80  RNY 82

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
               R + IL+LGLD AGK++I+ R+    +++ +PT+GFN   V Y N  +  ++DLGG
Sbjct: 2   SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGG 60

Query: 251 SEDFRTIWKQY 261
               R  W+ Y
Sbjct: 61  LTSIRPYWRCY 71

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLD AGK++I+ R+    +++ +PT+GFN   V Y N  +  ++DLGG    R  W
Sbjct: 10  ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYW 68

Query: 373 KQY 375
           + Y
Sbjct: 69  RCY 71

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R  W
Sbjct: 19  ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYW 77

Query: 259 KQY 261
           + Y
Sbjct: 78  RSY 80

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLDNAGK++++K++  E I  + PT GFN   V+    +++ ++D+GG    R  W
Sbjct: 19  ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYW 77

Query: 373 KQY 375
           + Y
Sbjct: 78  RSY 80

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 83.5 bits (207), Expect = 7e-19
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  R+ W
Sbjct: 24  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 82

Query: 259 KQY 261
             Y
Sbjct: 83  NTY 85

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 83.5 bits (207), Expect = 7e-19
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  R+ W
Sbjct: 24  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 82

Query: 373 KQY 375
             Y
Sbjct: 83  NTY 85

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 83.5 bits (207), Expect = 8e-19
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV 243
           L  T   L   R + +L+LGLDNAGK+SI+ R+    +++ VPTVG N   ++Y N    
Sbjct: 10  LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISF 68

Query: 244 FLYDLGGSEDFRTIWKQYL 262
            ++DLGG    R  W+ Y 
Sbjct: 69  EVWDLGGQTGVRPYWRCYF 87

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 81.1 bits (201), Expect = 6e-18
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L+LGLDNAGK+SI+ R+    +++ VPTVG N   ++Y N     ++DLGG    R  W
Sbjct: 25  VLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYW 83

Query: 373 KQYL 376
           + Y 
Sbjct: 84  RCYF 87

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 82.6 bits (205), Expect = 8e-19
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+GG +  R +W
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61

Query: 259 KQY 261
           + Y
Sbjct: 62  RHY 64

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 82.6 bits (205), Expect = 8e-19
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+GG +  R +W
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61

Query: 373 KQY 375
           + Y
Sbjct: 62  RHY 64

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 82.6 bits (205), Expect = 1e-18
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 189 LSLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYD 247
           +       + + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWD 73

Query: 248 LGGSEDFRTIWKQY 261
           +GG   FR++W++Y
Sbjct: 74  IGGQPRFRSMWERY 87

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
           + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN   + L+D+GG   FR++
Sbjct: 25  LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSM 83

Query: 372 WKQY 375
           W++Y
Sbjct: 84  WERY 87

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
           +L LGLDNAGK++++  +  + + +L PT       +  GN K+  F  DLGG    R +
Sbjct: 26  LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83

Query: 258 WKQYL 262
           WK Y 
Sbjct: 84  WKDYF 88

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           +L LGLDNAGK++++  +  + + +L PT       +  GN K+  F  DLGG    R +
Sbjct: 26  LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83

Query: 372 WKQYL 376
           WK Y 
Sbjct: 84  WKDYF 88

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
           ++ LGLDNAGK++++  +  + +   VPT+      +      +  F  DLGG    R +
Sbjct: 28  LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF--DLGGHIQARRV 85

Query: 258 WKQYL 262
           WK YL
Sbjct: 86  WKNYL 90

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
           ++ LGLDNAGK++++  +  + +   VPT+      +      +  F  DLGG    R +
Sbjct: 28  LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF--DLGGHIQARRV 85

Query: 372 WKQYL 376
           WK YL
Sbjct: 86  WKNYL 90

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 80.8 bits (200), Expect = 6e-18
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           IL+LGLD AGK++I+ R+    +++  PT+GFN   + Y N  ++ ++DLGG    R  W
Sbjct: 21  ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYW 79

Query: 259 KQY 261
           + Y
Sbjct: 80  RCY 82

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 80.8 bits (200), Expect = 6e-18
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL+LGLD AGK++I+ R+    +++  PT+GFN   + Y N  ++ ++DLGG    R  W
Sbjct: 21  ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYW 79

Query: 373 KQY 375
           + Y
Sbjct: 80  RCY 82

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 199 ILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
           +L LGLDN+GK++II ++        +++PT+GF+  + +  +     ++D+ G   +R 
Sbjct: 24  VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRN 82

Query: 257 IWKQY 261
           +W+ Y
Sbjct: 83  LWEHY 87

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
           +L LGLDN+GK++II ++        +++PT+GF+  + +  +     ++D+ G   +R 
Sbjct: 24  VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRN 82

Query: 371 IWKQY 375
           +W+ Y
Sbjct: 83  LWEHY 87

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 30/187 (16%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           I++ G  N+GK+S++  +  + +   V +     A    G+   +   D  G    R   
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 72

Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--------THLPLVDFRS 310
             YL T ++   G        ++++       +  P +LT+         +         
Sbjct: 73  SDYLKTRAKFVKG-------LIFMVDS-----TVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 311 VPILVLG----LDNAGKSSIIKRILGEPIISLVPT----VGFNRARVEYGNKYEVFLYDL 362
           + IL+      L  A   S IK  L   I  ++      +     ++   +  E  L  L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180

Query: 363 GGSEDFR 369
             ++ F+
Sbjct: 181 QSTDGFK 187

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           I++ G  N+GK+S++  +  + +   V +     A    G+   +   D  G    R   
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 72

Query: 373 KQYL 376
             YL
Sbjct: 73  SDYL 76

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK--YEVFLYDLGGSEDFR- 255
           +L +GL ++GK+ +  R+L         ++  + A  +  N     + L DL G E  R 
Sbjct: 10  VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69

Query: 256 TIWKQYLGT-------VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF 308
            +  ++  +       V        DS   Q  +            + L       +   
Sbjct: 70  QLLDRFKSSARAVVFVV--------DSAAFQREVKDVA--------EFLYQVLIDSMALK 113

Query: 309 RSVPILVLG----LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
            S  +L+      +  A  + +I++ L + + +L  T     + ++  +     L   G 
Sbjct: 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGK 173

Query: 365 SEDF 368
             +F
Sbjct: 174 EFEF 177

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK--YEVFLYDLGGSEDFR- 369
           +L +GL ++GK+ +  R+L         ++  + A  +  N     + L DL G E  R 
Sbjct: 10  VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69

Query: 370 TIWKQYL 376
            +  ++ 
Sbjct: 70  QLLDRFK 76

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 26/152 (17%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           I++ G  N+GK+S++  +  + +   V +     A    G+   +   D  G    R   
Sbjct: 51  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 108

Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--------THLPLVDFRS 310
             YL T ++   G        ++++       +  P +LT+         +         
Sbjct: 109 SDYLKTRAKFVKG-------LIFMVDS-----TVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 311 VPILVLG----LDNAGKSSIIKRILGEPIISL 338
           + IL+      L  A   S IK  L   I  +
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKV 188

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           I++ G  N+GK+S++  +  + +   V +     A    G+   +   D  G    R   
Sbjct: 51  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 108

Query: 373 KQYL 376
             YL
Sbjct: 109 SDYL 112

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 48/186 (25%)

Query: 189 LSLFDFR----SVPILVLGLDNAGKSSIIKRILGEPIISL-----------VPTVGFNRA 233
           +S  +F     +  I+  G   +GK++ +K I  +                  T+ F+  
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62

Query: 234 RVEYGN----KYEVFLYDLGGSEDFRTIWKQYLGTV--------SQTPLGRPDSRTCQVY 281
            ++ G     K    LY + G   +    K  L  V        S         R     
Sbjct: 63  PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA----PNRLRANAES 118

Query: 282 LIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG----LDNAGKSSIIKRILG-EPII 336
           +              +        +    VPI++      L +A    +++ ++  E   
Sbjct: 119 M------------RNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF 166

Query: 337 SLVPTV 342
            ++  V
Sbjct: 167 PVLEAV 172

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISL-----------VPTVGFNRARVEYGN----KYEV 357
           I+  G   +GK++ +K I  +                  T+ F+   ++ G     K   
Sbjct: 17  IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRF 76

Query: 358 FLYDLGGSEDFRTIWKQYL 376
            LY + G   +    K  L
Sbjct: 77  HLYTVPGQVFYNASRKLIL 95

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           IL++GL  +GKSSI K +         + L  T    +  +   +     ++D  G  DF
Sbjct: 23  ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82

Query: 369 RTIWKQ---YLGTVSQTLLVSHSLSGRPDDRCQVYLM 402
                            + V  +     +   ++++ 
Sbjct: 83  FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHIT 119

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           IL++GL  +GKSSI K +         + L  T    +  +   +     ++D  G  DF
Sbjct: 23  ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82

Query: 255 RTIWKQY 261
                 Y
Sbjct: 83  FDPTFDY 89

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 245
           P    LF  + + IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     +
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTV 213

Query: 246 YDLGGSEDFRTIWKQYL 262
           +D+GG +  R +W+ Y 
Sbjct: 214 WDVGGQDKIRPLWRHYF 230

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 248 LGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVY--LIMCGV-----HQVSGIPDELTS 299
            GG+  FR   +          L  + +SR   ++   ++           S      T 
Sbjct: 95  AGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTP 154

Query: 300 ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 359
                L   + + IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     +
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTV 213

Query: 360 YDLGGSEDFRTIWKQYL 376
           +D+GG +  R +W+ Y 
Sbjct: 214 WDVGGQDKIRPLWRHYF 230

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 63/468 (13%), Positives = 136/468 (29%), Gaps = 113/468 (24%)

Query: 96  IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGI 155
            W +L  Q+ +     +++   N   F  S + ++   P+            M   +   
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPS------------MMTRMYIE 114

Query: 156 QNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVL-GLDNAGKSSIIK 214
           Q    +  + V +       + +L LR  L   L L   R    +++ G+  +GK+    
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LEL---RPAKNVLIDGVLGSGKT---- 164

Query: 215 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274
                    +   V     +V+    +++F  +L       T+ +       Q  L + D
Sbjct: 165 --------WVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----QKLLYQID 210

Query: 275 SRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIK---- 328
                           S I   + S       L+  +     +L L N   +        
Sbjct: 211 PNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 329 --RILGEPIISLVPTVGFNRARVEYGNKY-EVFLYDLGGS---EDFRTIWKQYLGTVSQT 382
             +I       L+ T                + L     +   ++ +++  +YL    Q 
Sbjct: 265 SCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 383 LLVSHSLSGRPDDRCQVYLMSCNCQVYLISA-----KNLSNGFKKSERDETNISNFQIKN 437
           L         P +         +    +I+          + +K    D+       I++
Sbjct: 318 L---------PREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTI---IES 361

Query: 438 SSENLQDNNTSDNHDSKKKQPRKRKKKVA--PLNTDDETELSLPP--LRLLGRNVTHTDS 493
           S   L+               RK   +++  P +        +P   L L+  +V  +D 
Sbjct: 362 SLNVLEPAEY-----------RKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDV 404

Query: 494 NQ-----EQRCLNLSSDPLGTGAFNVLHAIATDAARRNPNQRDWEDRI 536
                   +  L +   P  +     + +I  +   +  N+      I
Sbjct: 405 MVVVNKLHKYSL-VEKQPKESTIS--IPSIYLELKVKLENEYALHRSI 449

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           +L++G   +GKSS+   I           L  T+    + + +     + L+D GG + F
Sbjct: 6   LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65

Query: 255 R 255
            
Sbjct: 66  M 66

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           +L++G   +GKSS+   I           L  T+    + + +     + L+D GG + F
Sbjct: 6   LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65

Query: 369 R 369
            
Sbjct: 66  M 66

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 22/176 (12%)

Query: 290 VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP------IISLVPTVG 343
            S I D L       L       + V G   +GKSS I  + G          + V  V 
Sbjct: 55  NSAISDALKEIDSSVLN------VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108

Query: 344 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT-----LLVSHSLSGRPDDRCQ 398
             R   ++ N   V  +DL G          YL  +        +++S +   + D    
Sbjct: 109 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 168

Query: 399 VYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQI-----KNSSENLQDNNTSD 449
             +     + Y +  K  S+   +++ +       ++      N     ++N  ++
Sbjct: 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           +L++G+   GKSSI K +         + L  T   +           V   +L G  ++
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVM--ELPGQLNY 59

Query: 369 R---TIWKQYLGTVSQTLLV 385
                  ++   +V   + V
Sbjct: 60  FEPSYDSERLFKSVGALVYV 79

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           +L++G+   GKSSI K +         + L  T   +           V   +L G  ++
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVM--ELPGQLNY 59

Query: 255 RTIW 258
               
Sbjct: 60  FEPS 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.9
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.9
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.89
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.89
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.89
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.88
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.88
1g6h_A	257	High-affinity branched-chain amino acid transport	99.88
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.88
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.88
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.88
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.87
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.87
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.86
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.86
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.85
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.85
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.85
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.85
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.85
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.85
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.84
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.83
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.83
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.83
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.83
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.82
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.82
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.8
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.79
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.79
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.77
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.76
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.67
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.67
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.6
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.59
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.55
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.52
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.49
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.47
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.42
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.36
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.33
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.27
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.26
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.24
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.23
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.22
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.19
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.15
2og2_A	359	Putative signal recognition particle receptor; nuc	99.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.09
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.08
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.04
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.02
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.99
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.99
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.99
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.94
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.93
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.91
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.9
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.88
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.87
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.86
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.84
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.83
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.83
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.81
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.8
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.79
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.78
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.78
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.78
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.77
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.77
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.76
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.75
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.75
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.74
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.74
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.74
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.74
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.74
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.74
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.74
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.74
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.73
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.73
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.73
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.73
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.72
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.72
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.72
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.72
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.71
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.71
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.71
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.71
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.7
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.7
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.7
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.69
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.68
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.68
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.68
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.67
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.67
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.67
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.67
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.67
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.66
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.66
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.66
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.66
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.65
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.65
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.65
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.64
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.63
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.62
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.6
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.6
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.59
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.58
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.58
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.56
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.54
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.53
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.53
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.52
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.5
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.49
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.48
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.48
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.47
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.47
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.47
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.46
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.44
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.44
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.43
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.8
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.43
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.41
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.4
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.4
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.4
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.37
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.37
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.36
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.35
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.35
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.35
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.34
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.32
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.32
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.31
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.31
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.29
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.28
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.28
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.27
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.26
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.26
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.24
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.23
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.23
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.23
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.2
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.19
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.18
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.18
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.17
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.16
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.16
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.15
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.15
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.15
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.13
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.12
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.12
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.1
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.1
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.09
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.08
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.08
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.07
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.06
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.05
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.04
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.03
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.02
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.01
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.01
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.01
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.0
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.99
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.98
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.97
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.96
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.94
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.93
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.89
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.88
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.88
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.87
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.86
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.86
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.85
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.84
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.84
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.84
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.84
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.83
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.83
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.82
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.82
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.82
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.81
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.8
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.79
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.78
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.77
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.77
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.76
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.76
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.76
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.75
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.74
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.74
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.73
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.73
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.73
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.72
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.71
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.7
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.7
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.69
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.69
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.69
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.67
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.67
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.66
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.66
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.65
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.65
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.64
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.64
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.63
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.63
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.62
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.62
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.61
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.61
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.61
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.61
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.61
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.6
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.6
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.6
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.58
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.58
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.58
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.56
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.55
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.55
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.55
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.55
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.53
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.53
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.52
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.52
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.52
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.51
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.5
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.5
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.49
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.49
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.49
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.48
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.47
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.47
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.47
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.45
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.45
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.45
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.45
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.44
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.43
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.43
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.42
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.42
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.41
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.4
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.39
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.39
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.37
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.36
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.36
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.35
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.35
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.35
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.34
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.34
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.33
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.33
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.33
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.31
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.3
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.29
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.28
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.28
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.27
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.27
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.26
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.22
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.21
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.21
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.18
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.17
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.16
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.14
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.13
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.12
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.11
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.09
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.14
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.07
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.07
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.06
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.04
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.03
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.02
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.02
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.02
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.01
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.01
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.0
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.96
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.92
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.89
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.87
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	96.85
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.82
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.8
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.78
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.76
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.71
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.7
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.7
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.69
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.69
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	96.67
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.66
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.64
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.6
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.59
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.51
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.51
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.5
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.5
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.49
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.47
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.46

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.90  E-value=2e-25  Score=231.86  Aligned_cols=213  Identities=14%  Similarity=0.140  Sum_probs=150.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|++..                  +...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         4 ~l~i~~ls~~y~~~~------------------~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~G--   59 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTP------------------VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF----EQPDSG--   59 (359)
T ss_dssp             CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC----CCCCCc--
Confidence            567888888876432                  23345678889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~  309 (537)
                        +|.++| .++...+. ....    .++.+++|||++.+++.++.            .+++...+......  ....+.
T Consensus        60 --~I~i~G-~~i~~~~~-~~~~----~~r~ig~vfQ~~~l~p~ltV------------~eni~~~l~~~~~~~~~~~~~v  119 (359)
T 3fvq_A           60 --EISLSG-KTIFSKNT-NLPV----RERRLGYLVQEGVLFPHLTV------------YRNIAYGLGNGKGRTAQERQRI  119 (359)
T ss_dssp             --EEEETT-EEEESSSC-BCCG----GGSCCEEECTTCCCCTTSCH------------HHHHHTTSTTSSCCSHHHHHHH
T ss_pred             --EEEECC-EECccccc-ccch----hhCCEEEEeCCCcCCCCCCH------------HHHHHHHHHHcCCChHHHHHHH
Confidence              999997 55532111 1111    23679999999988876554            11111111100000  011123


Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~v  382 (537)
                      ...+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..  ..++   ..+.++.+.+
T Consensus       120 ~~~l~~~gL~~~~-~r~~~~LSGGq~QRV----alArAL~~-~--P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t  191 (359)
T 3fvq_A          120 EAMLELTGISELA-GRYPHELSGGQQQRA----ALARALAP-D--PELILLDEPFSALDEQLRRQIREDMIAALRANGKS  191 (359)
T ss_dssp             HHHHHHHTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence            3445578887765 455999999999999    99999996 4  8999999  9999322  2233   3444455567


Q ss_pred             EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++ +||..++...+  +++|++|+++..|++.++.
T Consensus       192 vi~v-THd~~ea~~~aDri~vl~~G~i~~~g~~~el~  227 (359)
T 3fvq_A          192 AVFV-SHDREEALQYADRIAVMKQGRILQTASPHELY  227 (359)
T ss_dssp             EEEE-CCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEE-eCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence            7777 89998876543  9999999999999998874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.90  E-value=5.9e-26  Score=236.11  Aligned_cols=219  Identities=16%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++.+.|+...-  .            ..+...++|.+.+|+++||+||||||||||+++|+|.    ..|++|
T Consensus        22 ~~mi~v~~ls~~y~~~~~--~------------~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL----~~p~~G   83 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTR--T------------IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL----ERPTEG   83 (366)
T ss_dssp             -CCEEEEEEEEEEECSSS--E------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE
T ss_pred             CceEEEEeEEEEeCCCCC--C------------eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC----CCCCce
Confidence            457899999998864310  0            2234456788999999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~  306 (537)
                          +|.++| .++..++.   ... ...++.++++||++.+++.++.            .+++...+.. ....   ..
T Consensus        84 ----~I~i~G-~~i~~~~~---~~~-~~~r~~Ig~v~Q~~~l~~~~TV------------~env~~~~~~-~~~~~~~~~  141 (366)
T 3tui_C           84 ----SVLVDG-QELTTLSE---SEL-TKARRQIGMIFQHFNLLSSRTV------------FGNVALPLEL-DNTPKDEVK  141 (366)
T ss_dssp             ----EEEETT-EECSSCCH---HHH-HHHHTTEEEECSSCCCCTTSCH------------HHHHHHHHHH-SCCCHHHHH
T ss_pred             ----EEEECC-EECCcCCH---HHH-HHHhCcEEEEeCCCccCCCCCH------------HHHHHHHHHh-cCCCHHHHH
Confidence                999987 44322111   111 2234679999999987765443            1111111110 0111   11


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~  379 (537)
                      .+....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |++++     .+..+++.+.++.
T Consensus       142 ~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRV----aIArAL~~-~--P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~  213 (366)
T 3tui_C          142 RRVTELLSLVGLGDKH-DSYPSNLSGGQKQRV----AIARALAS-N--PKVLLCDQATSALDPATTRSILELLKDINRRL  213 (366)
T ss_dssp             HHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHH----HHHHHTTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence            1233445578887765 556999999999999    99999996 5  8999999  99993     2233334554454


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||+......+  +++|++|+++..|.+.++.
T Consensus       214 g~Tii~v-THdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~  252 (366)
T 3tui_C          214 GLTILLI-THEMDVVKRICDCVAVISNGELIEQDTVSEVF  252 (366)
T ss_dssp             CCEEEEE-ESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred             CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5677777 89998876544  9999999999999888774

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.89  E-value=6e-25  Score=216.33  Aligned_cols=199  Identities=14%  Similarity=0.042  Sum_probs=131.0

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -..+++.+.+|++++|+||||||||||+++|+|.    ..|++|    +|.++| .++..++.   .......+..++++
T Consensus        21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~p~~G----~I~~~g-~~~~~~~~---~~~~~~~~~~i~~v   88 (235)
T 3tif_A           21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL----DKPTEG----EVYIDN-IKTNDLDD---DELTKIRRDKIGFV   88 (235)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EECTTCCH---HHHHHHHHHHEEEE
T ss_pred             EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCce----EEEECC-EEcccCCH---HHHHHHhhccEEEE
Confidence            3456788889999999999999999999999999    999999    999987 43321111   12222334579999


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      ||++.+++..+..            +++...+.  ......   ...+....+..+|+.+......+.+|||||+||+  
T Consensus        89 ~Q~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv--  154 (235)
T 3tif_A           89 FQQFNLIPLLTAL------------ENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV--  154 (235)
T ss_dssp             CTTCCCCTTSCHH------------HHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH--
T ss_pred             ecCCccCCCCcHH------------HHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH--
Confidence            9998876654431            11110000  000000   0011222344566655433456899999999999  


Q ss_pred             ccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304        341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS  412 (537)
Q Consensus       341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~  412 (537)
                        ++|++++. +  |+++++|  |+|++..  ..   ++..+.++.+.+++++ +||......++ ++++++|+++..+.
T Consensus       155 --~iAral~~-~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v-tHd~~~~~~~d~i~~l~~G~i~~~~~  228 (235)
T 3tif_A          155 --AIARALAN-N--PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV-THDINVARFGERIIYLKDGEVEREEK  228 (235)
T ss_dssp             --HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE-CSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             --HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-cCCHHHHHhCCEEEEEECCEEEEEcC
Confidence              99999996 5  8999999  9999322  22   3344433334566777 88887654444 89999999998877


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      ..++
T Consensus       229 ~~~~  232 (235)
T 3tif_A          229 LRGF  232 (235)
T ss_dssp             CC--
T ss_pred             hhhh
Confidence            6654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.89  E-value=3.9e-25  Score=221.61  Aligned_cols=212  Identities=10%  Similarity=0.003  Sum_probs=142.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus        11 ~l~~~~l~~~~~~~~------------------vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl----~~p~~G--   66 (266)
T 4g1u_C           11 LLEASHLHYHVQQQA------------------LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY----LSPSHG--   66 (266)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS----SCCSSC--
T ss_pred             eEEEEeEEEEeCCee------------------EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc--
Confidence            567788888765432                  22345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.++| .++     ....  ...+.+.+++++|++.++...+.     .+       ++.........-....+...
T Consensus        67 --~I~~~g-~~~-----~~~~--~~~~~~~i~~v~q~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~  124 (266)
T 4g1u_C           67 --ECHLLG-QNL-----NSWQ--PKALARTRAVMRQYSELAFPFSV-----SE-------VIQMGRAPYGGSQDRQALQQ  124 (266)
T ss_dssp             --EEEETT-EET-----TTSC--HHHHHHHEEEECSCCCCCSCCBH-----HH-------HHHGGGTTSCSTTHHHHHHH
T ss_pred             --EEEECC-EEC-----CcCC--HHHHhheEEEEecCCccCCCCCH-----HH-------HHHhhhhhcCcHHHHHHHHH
Confidence              999987 432     1111  11233678999998775443222     00       00000000000001111223


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceecc----CCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS  380 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~----~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~  380 (537)
                      .+..+|+.+.. ...+.+|||||+||+    ++|++++..    .+ |+++++|  |+|++.     +..++..+.++.+
T Consensus       125 ~l~~~~l~~~~-~~~~~~LSgGq~QRv----~iAraL~~~~~~~~~-p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~  198 (266)
T 4g1u_C          125 VMAQTDCLALA-QRDYRVLSGGEQQRV----QLARVLAQLWQPQPT-PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP  198 (266)
T ss_dssp             HHHHTTCSTTT-TSBGGGCCHHHHHHH----HHHHHHHHTCCSSCC-CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHhcccccCCC-CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence            34466776554 445899999999999    999999951    03 8999999  999932     2233345544555


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +||.......+  ++++++|+++..+.+.++
T Consensus       199 ~tvi~v-tHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~  235 (266)
T 4g1u_C          199 LAVCCV-LHDLNLAALYADRIMLLAQGKLVACGTPEEV  235 (266)
T ss_dssp             EEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CEEEEE-EcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            677777 99998876533  999999999999988776

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.89  E-value=4.7e-25  Score=230.66  Aligned_cols=208  Identities=17%  Similarity=0.127  Sum_probs=147.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus         3 ~l~~~~l~~~yg~~~------------------~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~G--   58 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVV------------------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----ETITSG--   58 (381)
T ss_dssp             CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEE------------------EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC----CCCCCe--
Confidence            467788888775432                  23345678889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++.     .....    ++.+++|||++.+++.++.            .+++...+... ...   ...+
T Consensus        59 --~I~i~G-~~~~-----~~~~~----~r~ig~VfQ~~~l~p~ltV------------~eni~~~~~~~-~~~~~~~~~~  113 (381)
T 3rlf_A           59 --DLFIGE-KRMN-----DTPPA----ERGVGMVFQSYALYPHLSV------------AENMSFGLKLA-GAKKEVINQR  113 (381)
T ss_dssp             --EEEETT-EECT-----TCCGG----GSCEEEECTTCCCCTTSCH------------HHHHTHHHHHT-TCCHHHHHHH
T ss_pred             --EEEECC-EECC-----CCCHH----HCCEEEEecCCcCCCCCCH------------HHHHHHHHHHc-CCCHHHHHHH
Confidence              999987 4331     11111    2569999999998877654            11121111110 111   0112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...+..+.++.+.
T Consensus       114 v~~~l~~~~L~~~~-~r~p~~LSGGqrQRV----aiArAL~~-~--P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~  185 (381)
T 3rlf_A          114 VNQVAEVLQLAHLL-DRKPKALSGGQRQRV----AIGRTLVA-E--PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR  185 (381)
T ss_dssp             HHHHHHHTTCGGGT-TCCGGGSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCchhh-cCChhHCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence            33445577887665 455999999999999    99999997 5  8999999  9999322     2233444444356


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..+....+  +++|++|+++..|++.++.
T Consensus       186 tii~v-THd~~ea~~~aDri~vl~~G~i~~~g~~~~l~  222 (381)
T 3rlf_A          186 TMIYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELY  222 (381)
T ss_dssp             EEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-ECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence            67777 89988876544  9999999999999998874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.89  E-value=4.6e-25  Score=220.64  Aligned_cols=212  Identities=13%  Similarity=0.090  Sum_probs=143.4

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +..+++|.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus        24 ~l~i~~l~~~y~~~~------------------vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl----~~p~~G--   79 (263)
T 2olj_A           24 MIDVHQLKKSFGSLE------------------VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL----EDFDEG--   79 (263)
T ss_dssp             SEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             eEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC----CCCCCc--
Confidence            678899998875321                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++. .+  . ... ..+++.+++++|++.+++..+..            +++.........+.   ...+
T Consensus        80 --~I~~~g-~~i~-~~--~-~~~-~~~~~~i~~v~Q~~~l~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~  139 (263)
T 2olj_A           80 --EIIIDG-INLK-AK--D-TNL-NKVREEVGMVFQRFNLFPHMTVL------------NNITLAPMKVRKWPREKAEAK  139 (263)
T ss_dssp             --EEEETT-EESS-ST--T-CCH-HHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHHHTSCCCHHHHHHH
T ss_pred             --EEEECC-EECC-Cc--c-ccH-HHHhCcEEEEeCCCcCCCCCCHH------------HHHHHHHHHHcCCCHHHHHHH
Confidence              999987 4432 11  1 111 22346799999998766543320            11100000000110   0111


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     ..++..+.++ +.
T Consensus       140 ~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~  210 (263)
T 2olj_A          140 AMELLDKVGLKDKA-HAYPDSLSGGQAQRV----AIARALAM-E--PKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GM  210 (263)
T ss_dssp             HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHCCCchHh-cCChhhCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC
Confidence            22334567776554 445899999999999    99999996 5  8999999  9999322     2233444344 56


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||.......+  ++++++|+++..+.+.++.
T Consensus       211 tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          211 TMVVV-THEMGFAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             EEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-cCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            67777 89988876543  8999999999888777663

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.89  E-value=2e-25  Score=223.22  Aligned_cols=219  Identities=13%  Similarity=0.057  Sum_probs=144.0

Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  227 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt  227 (537)
                      |...++.++++.+.|+...                  +..+++|.+.+|++++|+||||||||||+++|+|.    ..|+
T Consensus         2 m~~~~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl----~~p~   59 (262)
T 1b0u_A            2 MSENKLHVIDLHKRYGGHE------------------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL----EKPS   59 (262)
T ss_dssp             ---CCEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCS
T ss_pred             CCCceEEEeeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCC
Confidence            3344678889988875321                  12345677889999999999999999999999999    9999


Q ss_pred             eeeeeEEEEECCcEEEEEe--------ecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc
Q psy16304        228 VGFNRARVEYGNKYEVFLY--------DLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS  299 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~--------D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~  299 (537)
                      +|    +|.++| .++...        +..  ......+++.++++||++.+++..+..            +++......
T Consensus        60 ~G----~i~~~g-~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~Q~~~l~~~ltv~------------e~l~~~~~~  120 (262)
T 1b0u_A           60 EG----AIIVNG-QNINLVRDKDGQLKVAD--KNQLRLLRTRLTMVFQHFNLWSHMTVL------------ENVMEAPIQ  120 (262)
T ss_dssp             EE----EEEETT-EECCEEECTTSSEEESC--HHHHHHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHHH
T ss_pred             Cc----EEEECC-EEccccccccccccccC--hhhHHHHhcceEEEecCcccCCCCcHH------------HHHHhhHHH
Confidence            99    999987 443210        010  011112346799999998766544331            111000000


Q ss_pred             cCcCCc---cccCCccEEEeccCcc-CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----
Q psy16304        300 ATHLPL---VDFRSVPILVLGLDNA-GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----  368 (537)
Q Consensus       300 ~~~l~~---~~~~~~~L~llGl~~~-gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----  368 (537)
                      ......   ..+....+..+|+.+. . ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSgGq~qRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~~  192 (262)
T 1b0u_A          121 VLGLSKHDARERALKYLAKVGIDERAQ-GKYPVHLSGGQQQRV----SIARALAM-E--PDVLLFDEPTSALDPELVGEV  192 (262)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCCHHHH-TSCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTSCHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCCchhh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHH
Confidence            001100   1112234456777654 3 445899999999999    99999996 5  8999999  9999322     


Q ss_pred             HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       369 ~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ..++..+.++ +.+++++ +||.......+  ++++++|+++..+.+.++.
T Consensus       193 ~~~l~~l~~~-g~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          193 LRIMQQLAEE-GKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             HHHHHHHHHT-TCCEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            2233444444 5567777 89988876533  8999999999888877763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.89  E-value=9.2e-25  Score=219.83  Aligned_cols=215  Identities=13%  Similarity=0.125  Sum_probs=143.0

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.++.++++++.|+...                 .+..+++|.+.+|++++|+||||||||||+++|+|.    +.|++|
T Consensus         5 ~~~l~i~~ls~~y~~~~-----------------~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl----~~p~~G   63 (275)
T 3gfo_A            5 DYILKVEELNYNYSDGT-----------------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI----LKPSSG   63 (275)
T ss_dssp             CEEEEEEEEEEECTTSC-----------------EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS----SCCSEE
T ss_pred             CcEEEEEEEEEEECCCC-----------------eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCe
Confidence            44678899999876432                 012345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L  305 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~  305 (537)
                          +|.++| .++.   .  .......++..++++||++. .+...+.     .+       ++...... ....   .
T Consensus        64 ----~I~~~G-~~i~---~--~~~~~~~~~~~ig~v~Q~~~~~~~~~tv-----~e-------~l~~~~~~-~~~~~~~~  120 (275)
T 3gfo_A           64 ----RILFDN-KPID---Y--SRKGIMKLRESIGIVFQDPDNQLFSASV-----YQ-------DVSFGAVN-MKLPEDEI  120 (275)
T ss_dssp             ----EEEETT-EECC---C--SHHHHHHHHHSEEEECSSGGGTCCSSBH-----HH-------HHHHHHHT-SCCCHHHH
T ss_pred             ----EEEECC-EECC---c--ccccHHHHhCcEEEEEcCcccccccCcH-----HH-------HHHHHHHH-cCCCHHHH
Confidence                999987 4431   1  11111234478999999873 1111111     00       00000000 0010   0


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~  378 (537)
                      ..+....+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++.     +..++..+.++
T Consensus       121 ~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv----~iAraL~~-~--P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~  192 (275)
T 3gfo_A          121 RKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRV----AIAGVLVM-E--PKVLILDEPTAGLDPMGVSEIMKLLVEMQKE  192 (275)
T ss_dssp             HHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence            11223345567776654 455899999999999    99999996 5  8999999  999932     22233444422


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      .+.+++++ +||.......+  ++++++|+++..|.+.++.
T Consensus       193 ~g~tvi~v-tHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          193 LGITIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             HCCEEEEE-ESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred             CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            24566666 78888776533  9999999999999988763

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.88  E-value=1.4e-24  Score=225.20  Aligned_cols=190  Identities=16%  Similarity=0.084  Sum_probs=134.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .++|.+.+|++++|+||||||||||+++|+|.    ..|++|    +|.++| ..+     .....    .++.+++|||
T Consensus        18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G----~I~~~g-~~i-----~~~~~----~~r~ig~v~Q   79 (348)
T 3d31_A           18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGF----HVPDSG----RILLDG-KDV-----TDLSP----EKHDIAFVYQ   79 (348)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHHTS----SCCSEE----EEEETT-EEC-----TTSCH----HHHTCEEECT
T ss_pred             eeEEEEcCCCEEEEECCCCccHHHHHHHHHcC----CCCCCc----EEEECC-EEC-----CCCch----hhCcEEEEec
Confidence            45677889999999999999999999999999    999999    999987 433     11122    2367999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++.++.            .+++...+... ......+....+..+|+.+.. .+.+.+|||||+||+    ++|++
T Consensus        80 ~~~l~~~ltv------------~enl~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSgGq~QRv----alAra  141 (348)
T 3d31_A           80 NYSLFPHMNV------------KKNLEFGMRMK-KIKDPKRVLDTARDLKIEHLL-DRNPLTLSGGEQQRV----ALARA  141 (348)
T ss_dssp             TCCCCTTSCH------------HHHHHHHHHHH-CCCCHHHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHH----HHHHH
T ss_pred             CcccCCCCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHH
Confidence            9988776544            11111101000 000001223345567877665 455899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++. +  |++++||  |++++.     +...++.+.++.+.+++++ +||..++...+  +++|++|+++..+++.++.
T Consensus       142 L~~-~--P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          142 LVT-N--PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI-THDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             TTS-C--CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE-ESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             HHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            996 5  8999999  999932     2233344444445566666 79988776543  8999999999999888773

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.88  E-value=1e-24  Score=213.22  Aligned_cols=208  Identities=15%  Similarity=0.112  Sum_probs=137.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +-.++++.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         4 ~l~~~~l~~~y~~~~------------------~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~p~~G--   59 (224)
T 2pcj_A            4 ILRAENIKKVIRGYE------------------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL----DAPTEG--   59 (224)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEe------------------eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce--
Confidence            467788888775421                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++..++.   .......+..+++++|++.+++..+..            +++..... .....   ...+
T Consensus        60 --~i~~~g-~~~~~~~~---~~~~~~~~~~i~~v~q~~~l~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~  120 (224)
T 2pcj_A           60 --KVFLEG-KEVDYTNE---KELSLLRNRKLGFVFQFHYLIPELTAL------------ENVIVPML-KMGKPKKEAKER  120 (224)
T ss_dssp             --EEEETT-EECCSSCH---HHHHHHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHH-HTTCCHHHHHHH
T ss_pred             --EEEECC-EECCCCCH---HHHHHHHhCcEEEEecCcccCCCCCHH------------HHHHhHHH-HcCCCHHHHHHH
Confidence              999987 44321110   111112236799999998766543320            01100000 00000   0111


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     ...+..+.++ +.
T Consensus       121 ~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~  191 (224)
T 2pcj_A          121 GEYLLSELGLGDKL-SRKPYELSGGEQQRV----AIARALAN-E--PILLFADEPTGNLDSANTKRVMDIFLKINEG-GT  191 (224)
T ss_dssp             HHHHHHHTTCTTCT-TCCGGGSCHHHHHHH----HHHHHTTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC
Confidence            22334467776554 455899999999999    99999996 5  8999999  9999332     2233444344 55


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS  412 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~  412 (537)
                      +++++ +||......++ ++++++|+++..|+
T Consensus       192 tvi~v-tHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          192 SIVMV-THERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEEEE-CSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             EEEEE-cCCHHHHHhCCEEEEEECCEEEEEee
Confidence            67777 89987664344 88899999987764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.88  E-value=2.3e-24  Score=214.88  Aligned_cols=209  Identities=15%  Similarity=0.111  Sum_probs=140.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +..++++.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus         7 ~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl----~~p~~G--   62 (257)
T 1g6h_A            7 ILRTENIVKYFGEFK------------------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF----LKADEG--   62 (257)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             EEEEeeeEEEECCEe------------------eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence            467788888775322                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCc--------
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATH--------  302 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~--------  302 (537)
                        +|.++| .++     .... ....++..+++++|++.+++..+.     .+       ++...... ...        
T Consensus        63 --~i~~~g-~~~-----~~~~-~~~~~~~~i~~v~q~~~l~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~  121 (257)
T 1g6h_A           63 --RVYFEN-KDI-----TNKE-PAELYHYGIVRTFQTPQPLKEMTV-----LE-------NLLIGEICPGESPLNSLFYK  121 (257)
T ss_dssp             --EEEETT-EEC-----TTCC-HHHHHHHTEEECCCCCGGGGGSBH-----HH-------HHHGGGTSTTSCHHHHHHHC
T ss_pred             --EEEECC-EEC-----CCCC-HHHHHhCCEEEEccCCccCCCCcH-----HH-------HHHHHHhhhccCcccccccc
Confidence              999987 432     1111 112234679999999875543332     01       00000000 000        


Q ss_pred             ---CC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----H
Q psy16304        303 ---LP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----R  369 (537)
Q Consensus       303 ---l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~  369 (537)
                         ..   ...+....+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     .
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQrv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~l~  193 (257)
T 1g6h_A          122 KWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLV----EIGRALMT-N--PKMIVMDEPIAGVAPGLAHDIF  193 (257)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTCCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHH
Confidence               00   011122344567876654 445899999999999    99999996 5  8999999  9999322     2


Q ss_pred             HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304        370 TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       370 ~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd  415 (537)
                      .++..+.++ +.+++++ +||.......+  ++++++|+++..+.+.+
T Consensus       194 ~~l~~l~~~-g~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          194 NHVLELKAK-GITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHT-TCEEEEE-CSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            233444343 4567777 89988776433  88999999998887766

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.88  E-value=2.2e-24  Score=224.46  Aligned_cols=208  Identities=15%  Similarity=0.104  Sum_probs=143.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G--   58 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVK------------------AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI----YKPTSG--   58 (359)
T ss_dssp             CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEEEEEEECCEE------------------EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC----CCCCcc--
Confidence            466778888765321                  22345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++.     .....    ++.+++|||++.+++.++.            .+++...+.. ....   ...+
T Consensus        59 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~  113 (359)
T 2yyz_A           59 --EIYFDD-VLVN-----DIPPK----YREVGMVFQNYALYPHMTV------------FENIAFPLRA-RRISKDEVEKR  113 (359)
T ss_dssp             --EEEETT-EECT-----TSCGG----GTTEEEECSSCCCCTTSCH------------HHHHHGGGSS-SCSHHHHTTHH
T ss_pred             --EEEECC-EECC-----CCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence              999987 4331     11111    2679999999988776554            1111111100 0110   0112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...+..+.++.+.
T Consensus       114 v~~~l~~~~L~~~~-~r~~~~LSgGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  185 (359)
T 2yyz_A          114 VVEIARKLLIDNLL-DRKPTQLSGGQQQRV----ALARALVK-Q--PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI  185 (359)
T ss_dssp             HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            23345577887665 455999999999999    99999996 5  8999999  9999322     2223344444345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..++...+  +++|++|+++..|++.++.
T Consensus       186 tvi~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~l~  222 (359)
T 2yyz_A          186 TSVYV-THDQAEAMTMASRIAVFNQGKLVQYGTPDEVY  222 (359)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-cCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            66666 79988775433  8999999999999988774

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.88  E-value=1.6e-24  Score=225.30  Aligned_cols=215  Identities=18%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+....                .+...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~i~~l~~~y~~~~~----------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G--   60 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKV----------------VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL----DVPSTG--   60 (353)
T ss_dssp             CEEEEEEEEEEGGGTE----------------EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEee----------------eeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence            3567778887654220                022345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| .++...........    ++.+++|||++.+++.++.            .+++...+.. .....   ..+
T Consensus        61 --~I~i~g-~~i~~~~~~~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~  120 (353)
T 1oxx_K           61 --ELYFDD-RLVASNGKLIVPPE----DRKIGMVFQTWALYPNLTA------------FENIAFPLTN-MKMSKEEIRKR  120 (353)
T ss_dssp             --EEEETT-EEEEETTEESSCGG----GSCEEEEETTSCCCTTSCH------------HHHHHGGGTT-SSCCHHHHHHH
T ss_pred             --EEEECC-EECcccccccCChh----hCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHHHH
Confidence              999997 55532100001112    3679999999988776544            1111111100 01110   112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--h---HHHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--D---FRTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~---~~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++  .   ....+..+.++.+.
T Consensus       121 v~~~l~~~~L~~~~-~~~~~~LSGGq~QRv----alAraL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  192 (353)
T 1oxx_K          121 VEEVAKILDIHHVL-NHFPRELSGAQQQRV----ALARALVK-D--PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV  192 (353)
T ss_dssp             HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            23445567887665 455899999999999    99999996 5  8999999  99992  2   22233444444345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..++...+  +++|++|+++..+++.++.
T Consensus       193 tvi~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          193 TLLVV-SHDPADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            66666 79988776543  8999999999999888774

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.88  E-value=1.9e-24  Score=224.49  Aligned_cols=209  Identities=16%  Similarity=0.134  Sum_probs=145.3

Q ss_pred             hhcccccCCCcc-cCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        151 ILMGIQNVPNFQ-TSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       151 ~li~~~~l~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .++.++++.+.| +...+                  ..+++|.+.+|++++|+||||||||||+++|+|.    ..|++|
T Consensus        13 ~~l~~~~l~~~y~g~~~v------------------l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G   70 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGARS------------------VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL----ERPTKG   70 (355)
T ss_dssp             EEEEEEEEEECCTTSTTC------------------EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE
T ss_pred             ceEEEEEEEEEEcCCCEE------------------EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC----CCCCcc
Confidence            467788888887 43221                  2345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~  306 (537)
                          +|.++| .++.     .....    ++.+++|||++.+++.++.            .+++...+.. ..+.   ..
T Consensus        71 ----~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~l~~-~~~~~~~~~  123 (355)
T 1z47_A           71 ----DVWIGG-KRVT-----DLPPQ----KRNVGLVFQNYALFQHMTV------------YDNVSFGLRE-KRVPKDEMD  123 (355)
T ss_dssp             ----EEEETT-EECT-----TCCGG----GSSEEEECGGGCCCTTSCH------------HHHHHHHHHH-TTCCHHHHH
T ss_pred             ----EEEECC-EECC-----cCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHH-cCCCHHHHH
Confidence                999987 4331     11122    3679999999887776544            1111110100 0111   01


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~  379 (537)
                      .+....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...+..+.++.
T Consensus       124 ~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~  195 (355)
T 1z47_A          124 ARVRELLRFMRLESYA-NRFPHELSGGQQQRV----ALARALAP-R--PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM  195 (355)
T ss_dssp             HHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            1223345567877665 455999999999999    99999996 5  8999999  9999322     22333444443


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||..++...+  +++|++|+++..+++.++.
T Consensus       196 g~tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          196 GVTSVFV-THDQEEALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             TCEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5567777 89988876543  8999999999999888774

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.88  E-value=3.9e-24  Score=223.63  Aligned_cols=208  Identities=17%  Similarity=0.132  Sum_probs=138.5

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus        11 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G--   66 (372)
T 1v43_A           11 EVKLENLTKRFGNFT------------------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL----EEPTEG--   66 (372)
T ss_dssp             CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             eEEEEEEEEEECCEE------------------EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCce--
Confidence            467788888775321                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| ..+.     .....    ++.+++|||++.+++.++.            .+++...+.. .....   ..+
T Consensus        67 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~  121 (372)
T 1v43_A           67 --RIYFGD-RDVT-----YLPPK----DRNISMVFQSYAVWPHMTV------------YENIAFPLKI-KKFPKDEIDKR  121 (372)
T ss_dssp             --EEEETT-EECT-----TSCGG----GGTEEEEEC------CCCH------------HHHHHTTCC---CCCHHHHHHH
T ss_pred             --EEEECC-EECC-----CCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence              999987 4331     11111    2679999999887766543            1111110100 00100   112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...+..+.++.+.
T Consensus       122 v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  193 (372)
T 1v43_A          122 VRWAAELLQIEELL-NRYPAQLSGGQRQRV----AVARAIVV-E--PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV  193 (372)
T ss_dssp             HHHHHHHTTCGGGT-TSCTTTCCSSCHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence            23345567887665 445899999999999    99999996 5  8999999  9999322     2233444444345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..++...+  +++|++|+++..+++.++.
T Consensus       194 tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~  230 (372)
T 1v43_A          194 TTIYV-THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY  230 (372)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            66666 79988775433  9999999999999988774

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.87  E-value=2.7e-24  Score=214.31  Aligned_cols=210  Identities=13%  Similarity=0.041  Sum_probs=141.4

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...                  +...+++.+.+|++++|+||||||||||+++|+|.    ..|++| 
T Consensus        14 ~~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl----~~p~~G-   70 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKE------------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL----IKPSSG-   70 (256)
T ss_dssp             CCEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE-
T ss_pred             CeEEEEEEEEEECCEE------------------EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce-
Confidence            4677888888775321                  12345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD  307 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~  307 (537)
                         +|.++| .++     ...   ...++..+++++|++.+++..+..            +++..... ......   ..
T Consensus        71 ---~I~~~g-~~~-----~~~---~~~~~~~i~~v~q~~~l~~~ltv~------------enl~~~~~-~~~~~~~~~~~  125 (256)
T 1vpl_A           71 ---IVTVFG-KNV-----VEE---PHEVRKLISYLPEEAGAYRNMQGI------------EYLRFVAG-FYASSSSEIEE  125 (256)
T ss_dssp             ---EEEETT-EET-----TTC---HHHHHTTEEEECTTCCCCTTSBHH------------HHHHHHHH-HHCCCHHHHHH
T ss_pred             ---EEEECC-EEC-----Ccc---HHHHhhcEEEEcCCCCCCCCCcHH------------HHHHHHHH-HcCCChHHHHH
Confidence               999987 332     111   122346799999998766543320            00100000 000000   01


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~  380 (537)
                      +....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..  ..+   +..+.+. +
T Consensus       126 ~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g  196 (256)
T 1vpl_A          126 MVERATEIAGLGEKI-KDRVSTYSKGMVRKL----LIARALMV-N--PRLAILDEPTSGLDVLNAREVRKILKQASQE-G  196 (256)
T ss_dssp             HHHHHHHHHCCGGGG-GSBGGGCCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHCCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccccCHHHHHHHHHHHHHHHhC-C
Confidence            122334466776654 344899999999999    99999996 5  8999999  9999322  223   3344333 4


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      .+++++ +||.......+  ++++++|+++..+.+.++.+
T Consensus       197 ~tiiiv-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          197 LTILVS-SHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             CEEEEE-ECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CEEEEE-cCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            566666 89988776533  88999999998887777644

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.87  E-value=3.3e-24  Score=223.43  Aligned_cols=208  Identities=16%  Similarity=0.120  Sum_probs=143.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G--   58 (362)
T 2it1_A            3 EIKLENIVKKFGNFT------------------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI----YKPTSG--   58 (362)
T ss_dssp             CEEEEEEEEESSSSE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEE------------------EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC----CCCCce--
Confidence            356778888775322                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| .++.     .....    ++.+++|||++.+++.++.            .+++...+.. .....   ..+
T Consensus        59 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~  113 (362)
T 2it1_A           59 --KIYFDE-KDVT-----ELPPK----DRNVGLVFQNWALYPHMTV------------YKNIAFPLEL-RKAPREEIDKK  113 (362)
T ss_dssp             --EEEETT-EECT-----TSCGG----GTTEEEECTTCCCCTTSCH------------HHHHHHHHHH-TTCCHHHHHHH
T ss_pred             --EEEECC-EECC-----cCCHh----HCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence              999987 4331     11111    2579999999988776544            1111110100 01100   112


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...++.+.++.+.
T Consensus       114 v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~  185 (362)
T 2it1_A          114 VREVAKMLHIDKLL-NRYPWQLSGGQQQRV----AIARALVK-E--PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI  185 (362)
T ss_dssp             HHHHHHHTTCTTCT-TCCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCchHh-hCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC
Confidence            23345577887665 455999999999999    99999996 5  8999999  9999322     2233444444345


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||..++...+  +++|++|+++..+++.++.
T Consensus       186 tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          186 TTVYV-THDQAEALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            66666 79988765433  8999999999999888774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.87  E-value=1.9e-24  Score=213.35  Aligned_cols=212  Identities=13%  Similarity=0.113  Sum_probs=137.7

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..++.++++.+.|+...                  +-..+++.+.+|++++|+||||||||||+++|+|.    +.|++|
T Consensus         4 ~~~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G   61 (240)
T 1ji0_A            4 DIVLEVQSLHVYYGAIH------------------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQKG   61 (240)
T ss_dssp             SEEEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE
T ss_pred             CceEEEEeEEEEECCee------------------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc
Confidence            34577888888775321                  12345677889999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc-cccCcCCcccc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL-TSATHLPLVDF  308 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l~~~~~  308 (537)
                          +|.++| .++.     .. ......+..+++++|++.+++..+..            +++.... .....-.....
T Consensus        62 ----~i~~~g-~~~~-----~~-~~~~~~~~~i~~v~q~~~l~~~ltv~------------enl~~~~~~~~~~~~~~~~  118 (240)
T 1ji0_A           62 ----KIIFNG-QDIT-----NK-PAHVINRMGIALVPEGRRIFPELTVY------------ENLMMGAYNRKDKEGIKRD  118 (240)
T ss_dssp             ----EEEETT-EECT-----TC-CHHHHHHTTEEEECSSCCCCTTSBHH------------HHHHGGGTTCCCSSHHHHH
T ss_pred             ----eEEECC-EECC-----CC-CHHHHHhCCEEEEecCCccCCCCcHH------------HHHHHhhhcCCCHHHHHHH
Confidence                999987 4331     11 11122235699999998766543320            0000000 00000000011


Q ss_pred             CCccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCC
Q psy16304        309 RSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVS  380 (537)
Q Consensus       309 ~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~  380 (537)
                      ....+..+ |+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..  .   ..+..+.+ .+
T Consensus       119 ~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g  189 (240)
T 1ji0_A          119 LEWIFSLFPRLKERL-KQLGGTLSGGEQQML----AIGRALMS-R--PKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG  189 (240)
T ss_dssp             HHHHHHHCHHHHTTT-TSBSSSSCHHHHHHH----HHHHHHTT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHcccHhhHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence            12223345 365544 344889999999999    99999996 5  8999999  9999322  2   23334433 34


Q ss_pred             EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .+++++ +||.......+  ++++++|+++..+.+.++
T Consensus       190 ~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  226 (240)
T 1ji0_A          190 TTILLV-EQNALGALKVAHYGYVLETGQIVLEGKASEL  226 (240)
T ss_dssp             CCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             CEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            556666 79987665433  889999999888777665

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.87  E-value=4.9e-24  Score=223.04  Aligned_cols=212  Identities=17%  Similarity=0.120  Sum_probs=144.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +...++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G--   58 (372)
T 1g29_1            3 GVRLVDVWKVFGEVT------------------AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL----EEPSRG--   58 (372)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCEE------------------EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC----CCCCcc--
Confidence            356778888765321                  12345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCC--CchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---c
Q psy16304        232 RARVEYGNKYEVFLYDLGG--SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---V  306 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G--~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~  306 (537)
                        +|.++| ..+..... +  ....    ++.+++|||++.+++.++.            .+++...+.. .....   .
T Consensus        59 --~I~i~g-~~~~~~~~-~~~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~  117 (372)
T 1g29_1           59 --QIYIGD-KLVADPEK-GIFVPPK----DRDIAMVFQSYALYPHMTV------------YDNIAFPLKL-RKVPRQEID  117 (372)
T ss_dssp             --EEEETT-EEEEEGGG-TEECCGG----GSSEEEECSCCCCCTTSCH------------HHHHHHHHHH-TTCCHHHHH
T ss_pred             --EEEECC-EECccccc-cccCCHh----HCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHH
Confidence              999997 55532100 0  0111    2569999999888776554            1111110100 01110   1


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~  379 (537)
                      .+....+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |++++||  |++++..     ...++.+.++.
T Consensus       118 ~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~  189 (372)
T 1g29_1          118 QRVREVAELLGLTELL-NRKPRELSGGQRQRV----ALGRAIVR-K--PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL  189 (372)
T ss_dssp             HHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEECCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            1223445567887665 455999999999999    99999996 5  8999999  9999322     22334444443


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||..++...+  +++|++|+++..|++.++.
T Consensus       190 g~tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~  228 (372)
T 1g29_1          190 GVTTIYV-THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (372)
T ss_dssp             TCEEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCEEEEE-CCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            4566666 79988776543  8999999999999888774

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=1.9e-24  Score=220.53  Aligned_cols=247  Identities=13%  Similarity=0.113  Sum_probs=150.1

Q ss_pred             ccccccccccccCccccccccCCCCCCc--hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccc
Q psy16304        108 NIACKDMNMQNVPNFQTSSVLSDDPAPT--FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLL  185 (537)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
                      .++.+..++++++++++.+....++..+  ...          ....+.++++.+.|+...                 .+
T Consensus        17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~----------~~~~i~~~~vs~~y~~~~-----------------~v   69 (306)
T 3nh6_A           17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRF----------QKGRIEFENVHFSYADGR-----------------ET   69 (306)
T ss_dssp             --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCC----------SSCCEEEEEEEEESSTTC-----------------EE
T ss_pred             hHHHHHHHHHHHHHHHhCCccccccccccccCC----------CCCeEEEEEEEEEcCCCC-----------------ce
Confidence            4566677777777777655443322111  110          012456677777664211                 12


Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..+++|.+.+|++++||||||||||||+++|+|.    +.|+.|    +|.++| .++..++.       ..++..+++|
T Consensus        70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl----~~p~~G----~I~i~G-~~i~~~~~-------~~~r~~i~~v  133 (306)
T 3nh6_A           70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF----YDISSG----CIRIDG-QDISQVTQ-------ASLRSHIGVV  133 (306)
T ss_dssp             EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS----SCCSEE----EEEETT-EETTSBCH-------HHHHHTEEEE
T ss_pred             eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCc----EEEECC-EEcccCCH-------HHHhcceEEE
Confidence            3356788889999999999999999999999999    999999    999987 44322221       2344789999


Q ss_pred             ccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchhhhhcCCCceeeecc
Q psy16304        266 SQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       266 ~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +|++.++.. ..+++.+... ...+.   +.+.+... .+      ...+..  -|+...- .....+|||||+||+   
T Consensus       134 ~Q~~~lf~~Tv~eNi~~~~~~~~~~~---~~~~~~~~-~l------~~~i~~lp~gl~t~~-~~~g~~LSGGqrQRv---  199 (306)
T 3nh6_A          134 PQDTVLFNDTIADNIRYGRVTAGNDE---VEAAAQAA-GI------HDAIMAFPEGYRTQV-GERGLKLSGGEKQRV---  199 (306)
T ss_dssp             CSSCCCCSEEHHHHHHTTSTTCCHHH---HHHHHHHH-TC------HHHHHHSTTGGGCEE-STTSBCCCHHHHHHH---
T ss_pred             ecCCccCcccHHHHHHhhcccCCHHH---HHHHHHHh-Cc------HHHHHhccchhhhHh-cCCcCCCCHHHHHHH---
Confidence            999887642 1111100000 00000   00000000 00      000000  0111111 112457999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA  413 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n  413 (537)
                       ++|++++. +  |++++||  |++++..  ..++   ..+.+  +.+++++ +|+......++ +++|++|+++..|++
T Consensus       200 -aiARAL~~-~--p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l~~~~~aD~i~vl~~G~iv~~G~~  272 (306)
T 3nh6_A          200 -AIARTILK-A--PGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVV-AHRLSTVVNADQILVIKDGCIVERGRH  272 (306)
T ss_dssp             -HHHHHHHH-C--CSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEE-CCSHHHHHTCSEEEEEETTEEEEEECH
T ss_pred             -HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEE-EcChHHHHcCCEEEEEECCEEEEECCH
Confidence             99999997 5  8999999  9999332  2222   33322  3566777 89998887755 999999999999999


Q ss_pred             cchhh
Q psy16304        414 KNLSN  418 (537)
Q Consensus       414 kdl~~  418 (537)
                      .++..
T Consensus       273 ~el~~  277 (306)
T 3nh6_A          273 EALLS  277 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.86  E-value=2.4e-23  Score=230.43  Aligned_cols=265  Identities=15%  Similarity=0.060  Sum_probs=169.4

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      ...-..|+..++..++.++.+..+++++.++++.+...+++..+...          ....+.++++.+.|++..   .+
T Consensus       291 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~---~~  357 (582)
T 3b5x_A          291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAER----------VNGEVDVKDVTFTYQGKE---KP  357 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCC----------CCCeEEEEEEEEEcCCCC---cc
Confidence            34567899999999999999999999999998865443221111110          023467888888876421   00


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                   +-.++++.+++|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++..++.   
T Consensus       358 -------------~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~~~~~~~---  412 (582)
T 3b5x_A          358 -------------ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF----YDVDSG----SICLDG-HDVRDYKL---  412 (582)
T ss_pred             -------------ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCC----EEEECC-EEhhhCCH---
Confidence                         12345677889999999999999999999999999    999999    999987 55432221   


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccccccCcCCccccCCccEEE--eccCccCccch
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSI  326 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~l  326 (537)
                          ..+++.+++|+|++.++.. ..+++.+..  +.+.++   +.+.++.. ++.      ..+..  -|+...- ...
T Consensus       413 ----~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~~-~l~------~~~~~~p~g~~t~~-~~~  477 (582)
T 3b5x_A          413 ----TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ---IEQAARQA-HAM------EFIENMPQGLDTVI-GEN  477 (582)
T ss_pred             ----HHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH---HHHHHHHC-CCH------HHHHhCcccccchh-cCC
Confidence                2234789999999887643 111111110  000000   00000000 000      00000  0111111 112


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                      ..+|||||+||+    ++|++++. +  |++++||  |++++...  .+++.+.+. .+.+++++ +|+......++ ++
T Consensus       478 ~~~LSgGq~qr~----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~~~~~~~~d~i~  549 (582)
T 3b5x_A          478 GTSLSGGQRQRV----AIARALLR-D--APVLILDEATSALDTESERAIQAALDELQKNKTVLVI-AHRLSTIEQADEIL  549 (582)
T ss_pred             CCcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEE
Confidence            467999999999    99999996 5  8999999  99994333  233333221 24466666 78887776555 89


Q ss_pred             hhcCCcEEEEecccchh
Q psy16304        401 LMSCNCQVYLISAKNLS  417 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~  417 (537)
                      ++++|+++..|+++++.
T Consensus       550 ~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          550 VVDEGEIIERGRHADLL  566 (582)
T ss_pred             EEECCEEEEECCHHHHH
Confidence            99999999998888774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.86  E-value=5.5e-23  Score=206.55  Aligned_cols=213  Identities=16%  Similarity=0.143  Sum_probs=137.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   +            ..+..+++|.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus        16 ~l~~~~l~~~y~~~~---~------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl----~~p~~G--   74 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHP---N------------VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL----YQPTGG--   74 (271)
T ss_dssp             CEEEEEEEECCTTCT---T------------SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             eEEEEEEEEEeCCCC---C------------ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCC--
Confidence            467888888876410   0            0112345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc---CC---c
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH---LP---L  305 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~---l~---~  305 (537)
                        +|.++| .++..++       ...++..+++++|++.++.. +.     .+       ++.........   ..   .
T Consensus        75 --~I~~~g-~~i~~~~-------~~~~~~~i~~v~Q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~  131 (271)
T 2ixe_A           75 --KVLLDG-EPLVQYD-------HHYLHTQVAAVGQEPLLFGR-SF-----RE-------NIAYGLTRTPTMEEITAVAM  131 (271)
T ss_dssp             --EEEETT-EEGGGBC-------HHHHHHHEEEECSSCCCCSS-BH-----HH-------HHHTTCSSCCCHHHHHHHHH
T ss_pred             --EEEECC-EEcccCC-------HHHHhccEEEEecCCccccc-cH-----HH-------HHhhhcccCChHHHHHHHHH
Confidence              999987 4331111       11234679999999876542 11     11       00000000000   00   0


Q ss_pred             cccCCccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--
Q psy16304        306 VDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--  377 (537)
Q Consensus       306 ~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--  377 (537)
                      .......+..+  |+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..  ..+++.+.+  
T Consensus       132 ~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~  203 (271)
T 2ixe_A          132 ESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAV----ALARALIR-K--PRLLILDNATSALDAGNQLRVQRLLYESP  203 (271)
T ss_dssp             HHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred             HHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            00011112223  454433 344889999999999    99999996 5  8999999  9999433  333343333  


Q ss_pred             -cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        378 -TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       378 -~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                       +.+.+++++ +||......++ ++++++|+++..+...++.
T Consensus       204 ~~~g~tviiv-tHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~  244 (271)
T 2ixe_A          204 EWASRTVLLI-TQQLSLAERAHHILFLKEGSVCEQGTHLQLM  244 (271)
T ss_dssp             TTTTSEEEEE-CSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             hhcCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence             224567777 89988766544 8999999999888877663

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.85  E-value=3.1e-23  Score=204.77  Aligned_cols=190  Identities=18%  Similarity=0.072  Sum_probs=127.7

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+ ++++|+||||||||||+++|+|.    ..|++|    +|.++| .++.     .....    ++.+++++|
T Consensus        17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~-----~~~~~----~~~i~~v~q   77 (240)
T 2onk_A           17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI----VKPDRG----EVRLNG-ADIT-----PLPPE----RRGIGFVPQ   77 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHHHTS----SCCSEE----EEEETT-EECT-----TSCTT----TSCCBCCCS
T ss_pred             eeEEEECC-EEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECC-----cCchh----hCcEEEEcC
Confidence            35677889 99999999999999999999999    999999    999987 4331     11112    256999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ++.+++..+..            +++.........-....+....+..+|+.+.. ...+.+|||||+||+    ++|++
T Consensus        78 ~~~l~~~ltv~------------enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv----~lAra  140 (240)
T 2onk_A           78 DYALFPHLSVY------------RNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRV----ALARA  140 (240)
T ss_dssp             SCCCCTTSCHH------------HHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHH----HHHHH
T ss_pred             CCccCCCCcHH------------HHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH----HHHHH
Confidence            98766543320            00100000000000011122334467776554 455899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++. +  |++++||  |+|++..  ..   .+..+.++.+.+++++ +||.......+  ++++++|+++..+.+.++.
T Consensus       141 l~~-~--p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          141 LVI-Q--PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV-THDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HTT-C--CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            996 5  8999999  9999332  22   2334433324556666 78887765433  8999999999888877763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.85  E-value=2.4e-23  Score=230.45  Aligned_cols=266  Identities=15%  Similarity=0.033  Sum_probs=169.0

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      ...-.+|+..++..++.++.+..+++++.++++.+...+++..+...          ....+.++++.+.|++..   .+
T Consensus       291 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~---~~  357 (582)
T 3b60_A          291 MIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR----------ATGDLEFRNVTFTYPGRE---VP  357 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSC----------CCCCEEEEEEEECSSSSS---CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCC----------CCCcEEEEEEEEEcCCCC---Cc
Confidence            34567899999999999999999999999998865443221111110          023467888888775320   01


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                   +-.++++.+++|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++..++    
T Consensus       358 -------------~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~----~~p~~G----~i~~~g-~~~~~~~----  411 (582)
T 3b60_A          358 -------------ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF----YDIDEG----HILMDG-HDLREYT----  411 (582)
T ss_dssp             -------------SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT----TCCSEE----EEEETT-EETTTBC----
T ss_pred             -------------cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----cCCCCC----eEEECC-EEccccC----
Confidence                         12345677889999999999999999999999999    999999    999987 4332111    


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccch
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSI  326 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~l  326 (537)
                         ...+++.+++|+|++.++.. ..+.+.+..  +.+.++   +.+.++.. ++.      ..+..+  |+...- ...
T Consensus       412 ---~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~l~~~-~l~------~~~~~~p~g~~~~~-~~~  477 (582)
T 3b60_A          412 ---LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ---IEEAARMA-YAM------DFINKMDNGLDTII-GEN  477 (582)
T ss_dssp             ---HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH---HHHHHHTT-TCH------HHHHHSTTGGGSBC-CTT
T ss_pred             ---HHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH---HHHHHHHc-CCH------HHHHhccccccccc-cCC
Confidence               12344789999999987653 111111000  000000   00000000 000      000000  111111 112


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                      ..+|||||+||+    ++|++++. +  |++++||  |++++...  .+++.+.+ ..+.+++++ +|+......++ ++
T Consensus       478 ~~~LSgGq~qrl----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~~~~~~~~d~i~  549 (582)
T 3b60_A          478 GVLLSGGQRQRI----AIARALLR-D--SPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRLSTIEQADEIV  549 (582)
T ss_dssp             SCSSCHHHHHHH----HHHHHHHH-C--CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEE-CSCGGGTTTCSEEE
T ss_pred             CCCCCHHHHHHH----HHHHHHHh-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHhCCEEE
Confidence            467999999999    99999997 5  8999999  99994332  23332222 124567777 88888776655 89


Q ss_pred             hhcCCcEEEEecccchhh
Q psy16304        401 LMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~~  418 (537)
                      ++++|+++..|+++++.+
T Consensus       550 ~l~~G~i~~~g~~~~l~~  567 (582)
T 3b60_A          550 VVEDGIIVERGTHSELLA  567 (582)
T ss_dssp             EEETTEEEEEECHHHHHH
T ss_pred             EEECCEEEEecCHHHHHH
Confidence            999999999998887743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.85  E-value=3.4e-23  Score=205.33  Aligned_cols=187  Identities=15%  Similarity=0.105  Sum_probs=122.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..++|.+.+|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++     .... . ..++..+++++
T Consensus        26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~I~i~g-~~~-----~~~~-~-~~~~~~i~~v~   89 (247)
T 2ff7_A           26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENG----QVLIDG-HDL-----ALAD-P-NWLRRQVGVVL   89 (247)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EET-----TTSC-H-HHHHHHEEEEC
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEh-----hhCC-H-HHHHhcEEEEe
Confidence            345677889999999999999999999999999    999999    999987 432     1111 1 12346799999


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEec-----------cCccCccchhhhhcCCCc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG-----------LDNAGKSSIIKRILGEPI  335 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG-----------l~~~gKs~li~~LSgG~r  335 (537)
                      |++.++.. +.     .+           .+..........+....+..+|           +.... ...+.+|||||+
T Consensus        90 Q~~~l~~~-tv-----~e-----------nl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~-~~~~~~LSgGq~  151 (247)
T 2ff7_A           90 QDNVLLNR-SI-----ID-----------NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV-GEQGAGLSGGQR  151 (247)
T ss_dssp             SSCCCTTS-BH-----HH-----------HHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC-STTTTCCCHHHH
T ss_pred             CCCccccc-cH-----HH-----------HHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhh-hCCCCCCCHHHH
Confidence            99876532 11     11           0000000000000000111122           22211 223678999999


Q ss_pred             eeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304        336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ  407 (537)
Q Consensus       336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i  407 (537)
                      ||+    ++|++++. +  |++++||  |++++..     ...+..+ +. +.+++++ +|+......++ ++++++|++
T Consensus       152 qRv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~-~~-g~tviiv-tH~~~~~~~~d~v~~l~~G~i  221 (247)
T 2ff7_A          152 QRI----AIARALVN-N--PKILIFDEATSALDYESEHVIMRNMHKI-CK-GRTVIII-AHRLSTVKNADRIIVMEKGKI  221 (247)
T ss_dssp             HHH----HHHHHHTT-C--CSEEEECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEE-CSSGGGGTTSSEEEEEETTEE
T ss_pred             HHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEE-eCCHHHHHhCCEEEEEECCEE
Confidence            999    99999996 5  8999999  9999322     2233343 23 4566777 88887766544 899999999


Q ss_pred             EEEecccchh
Q psy16304        408 VYLISAKNLS  417 (537)
Q Consensus       408 i~~g~nkdl~  417 (537)
                      +..+.+.++.
T Consensus       222 ~~~g~~~~l~  231 (247)
T 2ff7_A          222 VEQGKHKELL  231 (247)
T ss_dssp             EEEECHHHHH
T ss_pred             EEECCHHHHH
Confidence            9888877663

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=4.3e-23  Score=229.07  Aligned_cols=264  Identities=10%  Similarity=0.040  Sum_probs=169.6

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC-chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP-TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      ..-.+|+..+...++.++.+..+++|+.++++.+...+.+.+ +...          ....+.++++++.|+...     
T Consensus       304 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~-----  368 (598)
T 3qf4_B          304 RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE----------VRGEIEFKNVWFSYDKKK-----  368 (598)
T ss_dssp             TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCS----------CCCCEEEEEEECCSSSSS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC----------CCCeEEEEEEEEECCCCC-----
Confidence            345689999999999999999999999999886554322211 1100          012456788888775321     


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                  .+-.++++.+++|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++..++.   
T Consensus       369 ------------~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~i~~~~~---  424 (598)
T 3qf4_B          369 ------------PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF----YDVDRG----QILVDG-IDIRKIKR---  424 (598)
T ss_dssp             ------------CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS----SCCSEE----EEEETT-EEGGGSCH---
T ss_pred             ------------ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----cCCCCe----EEEECC-EEhhhCCH---
Confidence                        012345678889999999999999999999999999    999999    999987 44422221   


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchh
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSII  327 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li  327 (537)
                          ..+++.+++++|++.++.. ..+++.+... .+.++   +.+.+.... ..      ..+..  -|+...- ....
T Consensus       425 ----~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~---~~~~~~~~~-~~------~~~~~~~~g~~t~~-~~~g  489 (598)
T 3qf4_B          425 ----SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE---IKEAAKLTH-SD------HFIKHLPEGYETVL-TDNG  489 (598)
T ss_dssp             ----HHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTH---HHHHTTTTT-CH------HHHHTSTTGGGCBC-HHHH
T ss_pred             ----HHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHH---HHHHHHHhC-CH------HHHHhccccccchh-cCCC
Confidence                2345789999999987753 1111111000 00000   000000000 00      00000  0111111 1224


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      .+|||||+||+    ++|++++. +  |++++||  |++++...  .+.+.+.+ ..+.+++++ +|+......++ +++
T Consensus       490 ~~LSgGq~Qrv----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~~~~~d~i~~  561 (598)
T 3qf4_B          490 EDLSQGQRQLL----AITRAFLA-N--PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII-AHRLNTIKNADLIIV  561 (598)
T ss_dssp             TTSCHHHHHHH----HHHHHHHT-C--CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEE-SCCTTHHHHCSEEEE
T ss_pred             CCCCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCEEEE
Confidence            67999999999    99999996 5  8999999  99994332  22222221 124567777 89988887766 999


Q ss_pred             hcCCcEEEEecccchhh
Q psy16304        402 MSCNCQVYLISAKNLSN  418 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~~  418 (537)
                      +++|+++..|+++++.+
T Consensus       562 l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          562 LRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             ECSSSEEECSCHHHHHH
T ss_pred             EECCEEEEECCHHHHHh
Confidence            99999999999988753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.85  E-value=1.1e-23  Score=212.50  Aligned_cols=212  Identities=14%  Similarity=0.106  Sum_probs=136.0

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...+                  -.+++|.+.+|++++|+||||||||||+++|+|.    +.|++| 
T Consensus        20 ~~l~~~~l~~~y~~~~v------------------L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl----~~p~~G-   76 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKTI------------------LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY----EPATSG-   76 (279)
T ss_dssp             EEEEEEEEEEEETTEEE------------------EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE-
T ss_pred             ceEEEEeEEEEECCEEE------------------EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCe-
Confidence            45788899888754221                  2345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc--cceeeEEeecCcccccCCcccc----cccCcCC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS--RTCQVYLIMCGVHQVSGIPDEL----TSATHLP  304 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~--~~~il~v~Ds~~~~~~~l~~~l----~~~~~l~  304 (537)
                         +|.++| .++..   .... . ..+++.+++++|++.++...  +.     .+       ++....    .......
T Consensus        77 ---~I~~~g-~~~~~---~~~~-~-~~~~~~i~~v~Q~~~~~~~~~ltv-----~e-------nl~~~~~~~~~~~~~~~  135 (279)
T 2ihy_A           77 ---TVNLFG-KMPGK---VGYS-A-ETVRQHIGFVSHSLLEKFQEGERV-----ID-------VVISGAFKSIGVYQDID  135 (279)
T ss_dssp             ---EEEETT-BCCC------CC-H-HHHHTTEEEECHHHHTTSCTTSBH-----HH-------HHHTTC---------CC
T ss_pred             ---EEEECC-EEccc---ccCC-H-HHHcCcEEEEEcCcccccCCCCCH-----HH-------HHHhhhhhccccccCCc
Confidence               999987 32210   0111 1 12346799999986532111  11     00       000000    0000000


Q ss_pred             c--cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHH
Q psy16304        305 L--VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQY  375 (537)
Q Consensus       305 ~--~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~  375 (537)
                      .  ..+....+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     ..++..+
T Consensus       136 ~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv----~lAraL~~-~--p~lLlLDEPts~LD~~~~~~l~~~l~~l  207 (279)
T 2ihy_A          136 DEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRV----MIARALMG-Q--PQVLILDEPAAGLDFIARESLLSILDSL  207 (279)
T ss_dssp             HHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence            0  01122334467776554 445899999999999    99999996 5  8999999  9999322     2233444


Q ss_pred             HhcCCEEE--EEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        376 LGTVSQTL--LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       376 ~~~~~~vI--lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      .++ +.++  +++ +||.......+  ++++++|+++..+...++
T Consensus       208 ~~~-g~tv~~iiv-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  250 (279)
T 2ihy_A          208 SDS-YPTLAMIYV-THFIEEITANFSKILLLKDGQSIQQGAVEDI  250 (279)
T ss_dssp             HHH-CTTCEEEEE-ESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred             HHC-CCEEEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            344 3344  556 78888765433  899999999988877665

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.85  E-value=1.6e-22  Score=202.52  Aligned_cols=190  Identities=17%  Similarity=0.166  Sum_probs=127.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+.+|++++|+||||||||||+++|+|.    ..|++|    +|.++| ..+.        ..  .++..+++++
T Consensus        24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl----~~p~~G----~I~~~g-~~~~--------~~--~~~~~i~~v~   84 (266)
T 2yz2_A           24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL----IEPTSG----DVLYDG-ERKK--------GY--EIRRNIGIAF   84 (266)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EECC--------HH--HHGGGEEEEC
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECC-EECc--------hH--HhhhhEEEEe
Confidence            346678889999999999999999999999999    999999    999987 4321        11  2336799999


Q ss_pred             cCC-CCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccC--ccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLD--NAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~--~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |++ ..+...+.     .+       ++...... ...-....+....+..+|+.  +.. ...+.+|||||+||+    
T Consensus        85 q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv----  147 (266)
T 2yz2_A           85 QYPEDQFFAERV-----FD-------EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRV----  147 (266)
T ss_dssp             SSGGGGCCCSSH-----HH-------HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHH----
T ss_pred             ccchhhcCCCcH-----HH-------HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHH----
Confidence            985 22222221     00       00000000 00000011122344567776  544 455899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA  413 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n  413 (537)
                      ++|++++. +  |++++||  |+|++..  .   ..+..+.++ +.+++++ +||....... + ++++++|+++..+..
T Consensus       148 ~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~  222 (266)
T 2yz2_A          148 AIASVIVH-E--PDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILI-SHDIETVINHVDRVVVLEKGKKVFDGTR  222 (266)
T ss_dssp             HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999996 5  8999999  9999322  2   233444334 5567777 8998877653 3 889999999888877


Q ss_pred             cchh
Q psy16304        414 KNLS  417 (537)
Q Consensus       414 kdl~  417 (537)
                      .++.
T Consensus       223 ~~~~  226 (266)
T 2yz2_A          223 MEFL  226 (266)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7663

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.84  E-value=5.6e-23  Score=227.34  Aligned_cols=268  Identities=12%  Similarity=0.054  Sum_probs=171.5

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      +..-.+|+..+...++.++.+..+++|+.++++.+....++.++.+.        -.....+.++++++.|+...     
T Consensus       287 ~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~~~-----  353 (578)
T 4a82_A          287 LELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPI--------EIKQGRIDIDHVSFQYNDNE-----  353 (578)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCC--------CCCSCCEEEEEEEECSCSSS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccc--------CCCCCeEEEEEEEEEcCCCC-----
Confidence            44557899999999999999999999999998866544332211110        00022456778887765321     


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                 ..+-.++++.+++|++++|+||||||||||+++|.|.    +.|++|    +|.++| .++..++.   
T Consensus       354 -----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~~~~~~~---  410 (578)
T 4a82_A          354 -----------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF----YDVTSG----QILIDG-HNIKDFLT---  410 (578)
T ss_dssp             -----------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS----SCCSEE----EEEETT-EEGGGSCH---
T ss_pred             -----------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhCCH---
Confidence                       0123356678889999999999999999999999999    999999    999997 44322211   


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchh
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSII  327 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li  327 (537)
                          ..+++.+++++|++.++.. ..+++.+... ...++   +.+.+.... ..      ..+..  -|+...- ....
T Consensus       411 ----~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~~-~~------~~~~~lp~g~~t~~-~~~g  475 (578)
T 4a82_A          411 ----GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE---VVEAAKMAN-AH------DFIMNLPQGYDTEV-GERG  475 (578)
T ss_dssp             ----HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHH---HHHHHHHTT-CH------HHHHTSTTGGGCBC-CGGG
T ss_pred             ----HHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHH---HHHHHHHhC-cH------HHHHhCcchhhhhh-ccCC
Confidence                2345789999999987754 1121111000 00000   000000000 00      00000  0211111 1224


Q ss_pred             hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304        328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYL  401 (537)
Q Consensus       328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~l  401 (537)
                      .+|||||+||+    ++|++++. +  |++++||  |++++...  .+++.+.+ ..+.+++++ +|+......++ +++
T Consensus       476 ~~LSgGq~Qrv----~lAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~~~~~d~i~~  547 (578)
T 4a82_A          476 VKLSGGQKQRL----SIARIFLN-N--PPILILDEATSALDLESESIIQEALDVLSKDRTTLIV-AHRLSTITHADKIVV  547 (578)
T ss_dssp             TTSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE-CSSGGGTTTCSEEEE
T ss_pred             CcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCEEEE
Confidence            67999999999    99999997 5  8999999  99994332  22232221 123567777 89988887666 999


Q ss_pred             hcCCcEEEEecccchhh
Q psy16304        402 MSCNCQVYLISAKNLSN  418 (537)
Q Consensus       402 l~~G~ii~~g~nkdl~~  418 (537)
                      +++|+++..|+++++.+
T Consensus       548 l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          548 IENGHIVETGTHRELIA  564 (578)
T ss_dssp             EETTEEEEEECHHHHHH
T ss_pred             EECCEEEEECCHHHHHh
Confidence            99999999999988743

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.84  E-value=5.8e-23  Score=199.33  Aligned_cols=195  Identities=9%  Similarity=0.032  Sum_probs=126.8

Q ss_pred             HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304        149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  228 (537)
Q Consensus       149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~  228 (537)
                      .+.++.++++.+.|+. .+                  ...+++.+.+|++++|+||||||||||+++|+|.    ..|++
T Consensus         7 ~~~~l~~~~ls~~y~~-~i------------------l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl----~~p~~   63 (214)
T 1sgw_A            7 HGSKLEIRDLSVGYDK-PV------------------LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY----LKPLK   63 (214)
T ss_dssp             --CEEEEEEEEEESSS-EE------------------EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS----SCCSE
T ss_pred             CCceEEEEEEEEEeCC-eE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCC
Confidence            3677888888887754 22                  1234577789999999999999999999999999    99999


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC-cCCccc
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVD  307 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~  307 (537)
                      |    +|.++| .++.        .    ++..+++++|++.+++..+..            +++........ ... ..
T Consensus        64 G----~I~~~g-~~~~--------~----~~~~i~~v~q~~~~~~~~tv~------------enl~~~~~~~~~~~~-~~  113 (214)
T 1sgw_A           64 G----EIIYNG-VPIT--------K----VKGKIFFLPEEIIVPRKISVE------------DYLKAVASLYGVKVN-KN  113 (214)
T ss_dssp             E----EEEETT-EEGG--------G----GGGGEEEECSSCCCCTTSBHH------------HHHHHHHHHTTCCCC-HH
T ss_pred             e----EEEECC-EEhh--------h----hcCcEEEEeCCCcCCCCCCHH------------HHHHHHHHhcCCchH-HH
Confidence            9    999987 3321        1    236799999998765543320            00100000000 000 11


Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS  380 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~  380 (537)
                      +....+..+|+...  ...+.+|||||+||+    +++++++. +  |++++||  |+|+     ..+...+..+.+. +
T Consensus       114 ~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv----~laraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g  183 (214)
T 1sgw_A          114 EIMDALESVEVLDL--KKKLGELSQGTIRRV----QLASTLLV-N--AEIYVLDDPVVAIDEDSKHKVLKSILEILKE-K  183 (214)
T ss_dssp             HHHHHHHHTTCCCT--TSBGGGSCHHHHHHH----HHHHHTTS-C--CSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHcCCCcC--CCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-C
Confidence            12233446677665  445899999999999    99999996 5  8999999  9998     2233333444333 3


Q ss_pred             EEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304        381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQ  407 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~-i~ll~~G~i  407 (537)
                      .+++++ +|+......++ .+++..|++
T Consensus       184 ~tiiiv-tHd~~~~~~~~d~v~~~~~~~  210 (214)
T 1sgw_A          184 GIVIIS-SREELSYCDVNENLHKYSTKI  210 (214)
T ss_dssp             SEEEEE-ESSCCTTSSEEEEGGGGBC--
T ss_pred             CEEEEE-eCCHHHHHHhCCEEEEeCCcc
Confidence            456666 78888776655 444544443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.84  E-value=1.4e-22  Score=201.10  Aligned_cols=185  Identities=14%  Similarity=0.087  Sum_probs=127.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++.+.+|++++|+||||||||||+++|+|.    +.|+ |    +|.++| ..+..++       ...++..+++++|
T Consensus        18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl----~~p~-G----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q   80 (249)
T 2qi9_C           18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGK-G----SIQFAG-QPLEAWS-------ATKLALHRAYLSQ   80 (249)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCE-E----EEEETT-EEGGGSC-------HHHHHHHEEEECS
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCC-e----EEEECC-EECCcCC-------HHHHhceEEEECC
Confidence            45677889999999999999999999999999    9999 9    999987 4321111       1223467999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  345 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la  345 (537)
                      ++.++...+.                .+.+....  ... ..+....+..+|+.+.. ...+.+|||||+||+    ++|
T Consensus        81 ~~~~~~~~tv----------------~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~lA  138 (249)
T 2qi9_C           81 QQTPPFATPV----------------WHYLTLHQHDKTR-TELLNDVAGALALDDKL-GRSTNQLSGGEWQRV----RLA  138 (249)
T ss_dssp             CCCCCTTCBH----------------HHHHHTTCSSTTC-HHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHH----HHH
T ss_pred             CCccCCCCcH----------------HHHHHHhhccCCc-HHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHH
Confidence            9876543322                11111000  000 11122334456776554 344899999999999    999


Q ss_pred             cceeccCCceE-------EEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304        346 RARVEYGNKYE-------VFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY  409 (537)
Q Consensus       346 ~all~~~e~p~-------lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~  409 (537)
                      ++++. +  |+       +++||  |+|++..     ...+..+.++ +.+++++ +||....... + ++++++|+++.
T Consensus       139 raL~~-~--p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviiv-tHd~~~~~~~~d~v~~l~~G~i~~  213 (249)
T 2qi9_C          139 AVVLQ-I--TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMS-SHDLNHTLRHAHRAWLLKGGKMLA  213 (249)
T ss_dssp             HHHHH-H--CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHc-C--CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence            99997 4  78       99999  9999332     2233344334 4567777 8998877543 3 88999999988


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+.+.++
T Consensus       214 ~g~~~~~  220 (249)
T 2qi9_C          214 SGRREEV  220 (249)
T ss_dssp             EEEHHHH
T ss_pred             eCCHHHH
Confidence            8877665

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.84  E-value=1.1e-22  Score=201.16  Aligned_cols=187  Identities=14%  Similarity=0.076  Sum_probs=120.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      ++++.+.+|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++..++   ....    ++.+++++|
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~---~~~~----~~~i~~v~q   83 (243)
T 1mv5_A           20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERF----YQPTAG----EITIDG-QPIDNIS---LENW----RSQIGFVSQ   83 (243)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHTTS----SCCSBS----CEEETT-EESTTTS---CSCC----TTTCCEECC
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhCC---HHHH----HhhEEEEcC
Confidence            45677889999999999999999999999999    999999    999887 4331111   1122    267999999


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCc----------cchhhhhcCCCcee
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGK----------SSIIKRILGEPIIS  337 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gK----------s~li~~LSgG~rqr  337 (537)
                      ++.++.. +     +.+       ++...+.  .... ..+....+..+|+.+...          ...+.+|||||+||
T Consensus        84 ~~~l~~~-t-----v~e-------nl~~~~~--~~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr  147 (243)
T 1mv5_A           84 DSAIMAG-T-----IRE-------NLTYGLE--GDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR  147 (243)
T ss_dssp             SSCCCCE-E-----HHH-------HTTSCTT--SCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred             CCccccc-c-----HHH-------HHhhhcc--CCCC-HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence            9875531 1     111       0000000  0000 000001111222221110          12357899999999


Q ss_pred             eecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304        338 LVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY  409 (537)
Q Consensus       338 vs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~  409 (537)
                      +    ++|++++. +  |++++||  |+|+     ..+...+..+. . +.+++++ +|+......++ ++++++|+++.
T Consensus       148 v----~lAral~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~v-tH~~~~~~~~d~v~~l~~G~i~~  217 (243)
T 1mv5_A          148 L----AIARAFLR-N--PKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVI-AHRLSTIVDADKIYFIEKGQITG  217 (243)
T ss_dssp             H----HHHHHHHH-C--CSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEE-CCSHHHHHHCSEEEEEETTEECC
T ss_pred             H----HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEE-eCChHHHHhCCEEEEEECCEEEE
Confidence            9    99999997 5  8999999  9998     34444455554 3 4566777 88887665544 88999999887


Q ss_pred             Eecccch
Q psy16304        410 LISAKNL  416 (537)
Q Consensus       410 ~g~nkdl  416 (537)
                      .+.+.++
T Consensus       218 ~g~~~~~  224 (243)
T 1mv5_A          218 SGKHNEL  224 (243)
T ss_dssp             CSCHHHH
T ss_pred             eCCHHHH
Confidence            6666555

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.83  E-value=1.2e-22  Score=203.59  Aligned_cols=219  Identities=13%  Similarity=0.065  Sum_probs=136.5

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCce
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTV  228 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~  228 (537)
                      .++.++++.+.|+...                  +..++++.+.+|++++|+||||||||||+++|+|.    .  .|++
T Consensus        19 ~~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl----~~~~p~~   76 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDKA------------------ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR----EDYEVTG   76 (267)
T ss_dssp             -CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC----TTCEEEE
T ss_pred             ceEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCC
Confidence            4678888988775321                  12345677889999999999999999999999997    4  5899


Q ss_pred             eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304        229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L  305 (537)
Q Consensus       229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~  305 (537)
                      |    +|.++| .++.     ... .....+..+++++|++.+++..+..-.+.. .    ........ ......   .
T Consensus        77 G----~I~~~g-~~i~-----~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~-~----~~~~~~~~-~~~~~~~~~~  139 (267)
T 2zu0_C           77 G----TVEFKG-KDLL-----ALS-PEDRAGEGIFMAFQYPVEIPGVSNQFFLQT-A----LNAVRSYR-GQETLDRFDF  139 (267)
T ss_dssp             E----EEEETT-EEGG-----GSC-HHHHHHHTEEEECSSCCCCTTCBHHHHHHH-H----HHHHHHGG-GCCCCCHHHH
T ss_pred             e----EEEECC-EECC-----cCC-HHHHhhCCEEEEccCccccccccHHHHHHH-H----HHhhhhhh-ccccCCHHHH
Confidence            9    999987 3321     111 111123458899999876654332100000 0    00000000 000000   0


Q ss_pred             cccCCccEEEeccCccCccchhh-hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--c
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--T  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~  378 (537)
                      ..+....+..+|+........+. +|||||+||+    ++|++++. +  |++++||  |+|++..  ..+++.+.+  +
T Consensus       140 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv----~iAraL~~-~--p~lLlLDEPts~LD~~~~~~l~~~l~~l~~  212 (267)
T 2zu0_C          140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN----DILQMAVL-E--PELCILDESDSGLDIDALKVVADGVNSLRD  212 (267)
T ss_dssp             HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            01122334456775322234465 5999999999    99999997 5  8999999  9999433  333343322  2


Q ss_pred             CCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEecccch
Q psy16304        379 VSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g~nkdl  416 (537)
                      .+.+++++ +||......  ++ ++++++|+++..+.+.++
T Consensus       213 ~g~tviiv-tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  252 (267)
T 2zu0_C          213 GKRSFIIV-THYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  252 (267)
T ss_dssp             SSCEEEEE-CSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred             cCCEEEEE-eeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence            24567777 899887764  34 889999999988877654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.83  E-value=9.3e-23  Score=225.88  Aligned_cols=267  Identities=14%  Similarity=0.092  Sum_probs=168.7

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA  172 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~  172 (537)
                      ....+|+..+...+..++.+..+++++.++++.+....++..+...       . .....+.++++++.|+...   .  
T Consensus       290 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~-------~-~~~~~i~~~~v~~~y~~~~---~--  356 (587)
T 3qf4_A          290 MQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALAL-------P-NVEGSVSFENVEFRYFENT---D--  356 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCC-------S-CCCCCEEEEEEEECSSSSS---C--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCcccc-------C-CCCCcEEEEEEEEEcCCCC---C--
Confidence            3456899999999999999999999999998866544332221110       0 0022467778887764321   0  


Q ss_pred             cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                                 .+-.++++.+++|++++|+||||||||||+++|+|.    +.|++|    +|.++| .++..++     
T Consensus       357 -----------~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~----~~~~~G----~i~i~g-~~i~~~~-----  411 (587)
T 3qf4_A          357 -----------PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL----IDPERG----RVEVDE-LDVRTVK-----  411 (587)
T ss_dssp             -----------CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS----SCCSEE----EEEESS-SBGGGBC-----
T ss_pred             -----------cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCc----EEEECC-EEcccCC-----
Confidence                       123356678889999999999999999999999999    999999    999887 3322111     


Q ss_pred             hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchhh
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSIIK  328 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li~  328 (537)
                        ...+++.+++|+|++.++.. ..+++.+... .+.++   +.+.+... .+      ...+..  -|+...- .....
T Consensus       412 --~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~---~~~~~~~~-~~------~~~i~~l~~g~~~~~-~~~~~  478 (587)
T 3qf4_A          412 --LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE---IVEAAKIA-QI------HDFIISLPEGYDSRV-ERGGR  478 (587)
T ss_dssp             --HHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHH---HHHHHHHT-TC------HHHHHTSSSGGGCEE-CSSSC
T ss_pred             --HHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHH---HHHHHHHh-Cc------HHHHHhcccchhhHh-cCCCC
Confidence              12345789999999987643 1111110000 00000   00000000 00      000000  0221111 12256


Q ss_pred             hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304        329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYLM  402 (537)
Q Consensus       329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~ll  402 (537)
                      +|||||+||+    ++|++++. +  |++++||  |++++..  ..+.+.+.+ ..+.+++++ +|+......++ ++++
T Consensus       479 ~LSgGqrQrv----~lARal~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~l~~~~~~d~i~vl  550 (587)
T 3qf4_A          479 NFSGGQKQRL----SIARALVK-K--PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII-TQKIPTALLADKILVL  550 (587)
T ss_dssp             SSCHHHHHHH----HHHHHHHT-C--CSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEE-ESCHHHHTTSSEEEEE
T ss_pred             CcCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEE-ecChHHHHhCCEEEEE
Confidence            7999999999    99999996 5  8999999  9999433  223333322 224566666 78888777655 9999


Q ss_pred             cCCcEEEEecccchhh
Q psy16304        403 SCNCQVYLISAKNLSN  418 (537)
Q Consensus       403 ~~G~ii~~g~nkdl~~  418 (537)
                      ++|+++..|+++++.+
T Consensus       551 ~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          551 HEGKVAGFGTHKELLE  566 (587)
T ss_dssp             ETTEEEEEECHHHHHH
T ss_pred             ECCEEEEECCHHHHHh
Confidence            9999999999988753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.83  E-value=1.6e-22  Score=201.25  Aligned_cols=196  Identities=14%  Similarity=0.123  Sum_probs=129.0

Q ss_pred             hcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        152 LMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       152 li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      ++.++++.+.|+ ...                  +-..+++.+.+|++++|+||||||||||+++|+|.    ..|++| 
T Consensus         4 ~l~i~~l~~~y~~~~~------------------vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G-   60 (253)
T 2nq2_C            4 ALSVENLGFYYQAENF------------------LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI----HRPIQG-   60 (253)
T ss_dssp             EEEEEEEEEEETTTTE------------------EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS----SCCSEE-
T ss_pred             eEEEeeEEEEeCCCCe------------------EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc-
Confidence            467788888775 221                  12345677889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc-C---cCCc-
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-T---HLPL-  305 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~---~l~~-  305 (537)
                         +|.+                 +    ..+++++|++.++...+.     .+       ++....... .   .... 
T Consensus        61 ---~I~~-----------------~----~~i~~v~q~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~  104 (253)
T 2nq2_C           61 ---KIEV-----------------Y----QSIGFVPQFFSSPFAYSV-----LD-------IVLMGRSTHINTFAKPKSH  104 (253)
T ss_dssp             ---EEEE-----------------C----SCEEEECSCCCCSSCCBH-----HH-------HHHGGGGGGSCTTCCCCHH
T ss_pred             ---EEEE-----------------e----ccEEEEcCCCccCCCCCH-----HH-------HHHHhhhhhcccccCCCHH
Confidence               5541                 1    358888998775543222     01       000000000 0   0000 


Q ss_pred             -cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHh
Q psy16304        306 -VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLG  377 (537)
Q Consensus       306 -~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~  377 (537)
                       ..+....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |++++||  |+|++..     ...+..+.+
T Consensus       105 ~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~  176 (253)
T 2nq2_C          105 DYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLI----LIARAIAS-E--CKLILLDEPTSALDLANQDIVLSLLIDLAQ  176 (253)
T ss_dssp             HHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-T--CSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence             11122334466776654 344899999999999    99999996 5  8999999  9999332     223334433


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +.+.+++++ +||.......+  ++++++|+ +..+.+.++
T Consensus       177 ~~g~tvi~v-tHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          177 SQNMTVVFT-THQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             TSCCEEEEE-ESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             hcCCEEEEE-ecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            324566666 89988775433  88899999 777766655

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.82  E-value=4e-22  Score=197.89  Aligned_cols=211  Identities=14%  Similarity=0.021  Sum_probs=129.1

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...                  +-.++++.+.+|++++|+||||||||||+++|+|..  .+.|++|  
T Consensus         3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~--~~~p~~G--   60 (250)
T 2d2e_A            3 QLEIRDLWASIDGET------------------ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERG--   60 (250)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT--TCEEEEE--
T ss_pred             eEEEEeEEEEECCEE------------------EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCce--
Confidence            466778888765321                  123456778899999999999999999999999950  0368999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc--C---Ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--L---PLV  306 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l---~~~  306 (537)
                        +|.++| .++     .... .+...+..+++++|++.+++..+..     +       ++.........  .   ...
T Consensus        61 --~I~~~g-~~~-----~~~~-~~~~~~~~i~~v~q~~~~~~~~tv~-----e-------~l~~~~~~~~~~~~~~~~~~  119 (250)
T 2d2e_A           61 --EILLDG-ENI-----LELS-PDERARKGLFLAFQYPVEVPGVTIA-----N-------FLRLALQAKLGREVGVAEFW  119 (250)
T ss_dssp             --EEEETT-EEC-----TTSC-HHHHHHTTBCCCCCCCC-CCSCBHH-----H-------HHHHHHHHHHTSCCCHHHHH
T ss_pred             --EEEECC-EEC-----CCCC-HHHHHhCcEEEeccCCccccCCCHH-----H-------HHHHHHHhhccccCCHHHHH
Confidence              999987 432     1111 1112234588999998866543320     0       00000000000  0   000


Q ss_pred             ccCCccEEEeccC-ccCccchhhh-hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--c
Q psy16304        307 DFRSVPILVLGLD-NAGKSSIIKR-ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--T  378 (537)
Q Consensus       307 ~~~~~~L~llGl~-~~gKs~li~~-LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~  378 (537)
                      .+....+..+|+. ... ...+.+ |||||+||+    ++|++++. +  |++++||  |+|++..  ..+++.+.+  .
T Consensus       120 ~~~~~~l~~~gl~~~~~-~~~~~~~LSgGqkQrv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~  191 (250)
T 2d2e_A          120 TKVKKALELLDWDESYL-SRYLNEGFSGGEKKRN----EILQLLVL-E--PTYAVLDETDSGLDIDALKVVARGVNAMRG  191 (250)
T ss_dssp             HHHHHHHHHHTCCGGGG-GSBTTCC----HHHHH----HHHHHHHH-C--CSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCChhHh-cCCcccCCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            1122334456773 443 444788 999999999    99999997 5  8999999  9999432  223333222  2


Q ss_pred             CCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEeccc
Q psy16304        379 VSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g~nk  414 (537)
                      .+.+++++ +||.......  + ++++++|+++..+.+.
T Consensus       192 ~g~tvi~v-tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          192 PNFGALVI-THYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             TTCEEEEE-CSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             cCCEEEEE-ecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            34567777 8998877653  4 8889999998877654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.82  E-value=3.5e-22  Score=239.18  Aligned_cols=270  Identities=13%  Similarity=0.036  Sum_probs=180.0

Q ss_pred             hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      +..-..|+..+...+..++.+..++++++++++.++.++++.++-..       ..-...-+.+++++..|++..   + 
T Consensus       362 ~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~-------~~~~~g~I~~~nvsF~Y~~~~---~-  430 (1321)
T 4f4c_A          362 VMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRK-------DMKIKGDITVENVHFTYPSRP---D-  430 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCC-------CCCCCCCEEEEEEEECCSSST---T-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-------CCCCCCcEEEEEeeeeCCCCC---C-
Confidence            34456899999999999999999999999999876655443322110       000012356677777665421   1 


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                 ...-.++++.+++|++++|||++|||||||+++|.|.    +.|+.|    +|.++| .++..++.   
T Consensus       431 -----------~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~----~~~~~G----~I~idG-~~i~~~~~---  487 (1321)
T 4f4c_A          431 -----------VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY----YDVLKG----KITIDG-VDVRDINL---  487 (1321)
T ss_dssp             -----------SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS----SCCSEE----EEEETT-EETTTSCH---
T ss_pred             -----------CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc----cccccC----cccCCC-ccchhccH---
Confidence                       1123456688889999999999999999999999999    999999    999997 55443333   


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI  326 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l  326 (537)
                          ..++..+++|+|++.++.. ..+++.+.-+ .+.+++..+.+..   +.+..++.....     .+|..+.     
T Consensus       488 ----~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T-----~vGe~G~-----  553 (1321)
T 4f4c_A          488 ----EFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT-----LVGDRGT-----  553 (1321)
T ss_dssp             ----HHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS-----EESSSSC-----
T ss_pred             ----HHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc-----EecCCCC-----
Confidence                3445889999999998865 3444433221 1222111111000   111222211111     4555443     


Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                        .||||||||+    ++||+++. +  |++++||  |++++..  ..+.+.+.+. .+.+++++ +|.......++ ++
T Consensus       554 --~LSGGQkQRi----aiARAl~~-~--~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii-aHrls~i~~aD~Ii  623 (1321)
T 4f4c_A          554 --QLSGGQKQRI----AIARALVR-N--PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII-AHRLSTIRNADLII  623 (1321)
T ss_dssp             --CCCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE-CSCTTTTTTCSEEE
T ss_pred             --CCCHHHHHHH----HHHHHHcc-C--CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE-cccHHHHHhCCEEE
Confidence              3999999999    99999996 4  8999999  9999432  2222333221 23466666 79988888877 99


Q ss_pred             hhcCCcEEEEecccchhhh
Q psy16304        401 LMSCNCQVYLISAKNLSNG  419 (537)
Q Consensus       401 ll~~G~ii~~g~nkdl~~~  419 (537)
                      +|++|+++..|++++|.+.
T Consensus       624 vl~~G~ive~Gth~eL~~~  642 (1321)
T 4f4c_A          624 SCKNGQVVEVGDHRALMAQ  642 (1321)
T ss_dssp             EEETTEEEEEECHHHHHTT
T ss_pred             EeeCCeeeccCCHHHHHHh
Confidence            9999999999999998643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.82  E-value=1.7e-22  Score=242.02  Aligned_cols=263  Identities=12%  Similarity=-0.007  Sum_probs=169.4

Q ss_pred             HHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchh
Q psy16304         97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFE  176 (537)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~  176 (537)
                      .|+..+...+..++....++++++++++.+..++++..+-+.        --...-+.+++++..|+++.     .    
T Consensus      1029 ~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~--------~~~~g~I~f~nVsf~Y~~~~-----~---- 1091 (1321)
T 4f4c_A         1029 STLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK--------KKLYGKVIFKNVRFAYPERP-----E---- 1091 (1321)
T ss_dssp             SSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBC--------CCCCCCEEEEEEEECCTTSC-----S----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCC--------CCCCCeEEEEEEEEeCCCCC-----C----
Confidence            345555555566666667777777776655444332221111        00012355666666654321     1    


Q ss_pred             hcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhH
Q psy16304        177 NFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT  256 (537)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~  256 (537)
                            ..+-++++|.+++|+++||||++|||||||+++|.|.    +.|++|    +|.++| .++.-++.       .
T Consensus      1092 ------~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl----~~p~~G----~I~iDG-~di~~i~~-------~ 1149 (1321)
T 4f4c_A         1092 ------IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF----YDTLGG----EIFIDG-SEIKTLNP-------E 1149 (1321)
T ss_dssp             ------SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS----SCCSSS----EEEETT-EETTTBCH-------H
T ss_pred             ------CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC----ccCCCC----EEEECC-EEhhhCCH-------H
Confidence                  1123456788899999999999999999999999999    999999    999998 55544333       3


Q ss_pred             HHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc------cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304        257 IWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL------TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR  329 (537)
Q Consensus       257 ~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l------~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~  329 (537)
                      .++..+++|+|++.+|.. ..+++.+..|......+++.+.+      +.+..++.....     .+|..+.       .
T Consensus      1150 ~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT-----~vge~G~-------~ 1217 (1321)
T 4f4c_A         1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET-----RVGDRGT-------Q 1217 (1321)
T ss_dssp             HHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCS-----EETTTSC-------S
T ss_pred             HHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCC-----EecCCCc-------c
Confidence            344889999999998875 44444333331100001111111      111111111111     3443332       4


Q ss_pred             hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304        330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS  403 (537)
Q Consensus       330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~  403 (537)
                      ||||||||+    ++|||++. +  |++++||  |++++...+  +.+.+.+. .+.+++++ +|...+...++ +++|+
T Consensus      1218 LSgGQrQri----aiARAllr-~--~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I-AHRLsTi~~aD~I~Vld 1289 (1321)
T 4f4c_A         1218 LSGGQKQRI----AIARALVR-N--PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI-AHRLNTVMNADCIAVVS 1289 (1321)
T ss_dssp             SCHHHHHHH----HHHHHHHS-C--CSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE-CSSSSTTTTCSEEEEES
T ss_pred             cCHHHHHHH----HHHHHHHh-C--CCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe-ccCHHHHHhCCEEEEEE
Confidence            999999999    99999996 4  8999999  999954443  33444333 34578888 89999988777 99999


Q ss_pred             CCcEEEEecccchhh
Q psy16304        404 CNCQVYLISAKNLSN  418 (537)
Q Consensus       404 ~G~ii~~g~nkdl~~  418 (537)
                      +|+++..|++.+|.+
T Consensus      1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             SSSEEEEECHHHHHH
T ss_pred             CCEEEEECCHHHHHh
Confidence            999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.82  E-value=7.1e-22  Score=197.25  Aligned_cols=210  Identities=13%  Similarity=0.095  Sum_probs=130.7

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++++.+.|+...   . .           .+..++++.+.+|++++|+||||||||||+++|+|.    +.| .| 
T Consensus        16 ~~l~i~~l~~~y~~~~---~-~-----------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~-~G-   74 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT---N-H-----------RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF----YDA-EG-   74 (260)
T ss_dssp             CCEEEEEEEECCTTCC---S-S-----------CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCC-EE-
T ss_pred             CeEEEEEEEEEeCCCC---c-C-----------ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCC-Ce-
Confidence            4578889988876421   0 0           012345677889999999999999999999999999    776 89 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                         +|.++| .++..+     .  ...++..+++++|++.++.. +     +.+           .+..........+..
T Consensus        75 ---~I~i~g-~~i~~~-----~--~~~~~~~i~~v~Q~~~l~~~-t-----v~e-----------nl~~~~~~~~~~~~~  126 (260)
T 2ghi_A           75 ---DIKIGG-KNVNKY-----N--RNSIRSIIGIVPQDTILFNE-T-----IKY-----------NILYGKLDATDEEVI  126 (260)
T ss_dssp             ---EEEETT-EEGGGB-----C--HHHHHTTEEEECSSCCCCSE-E-----HHH-----------HHHTTCTTCCHHHHH
T ss_pred             ---EEEECC-EEhhhc-----C--HHHHhccEEEEcCCCccccc-C-----HHH-----------HHhccCCCCCHHHHH
Confidence               999987 433111     1  11234679999999876531 1     111           000000000000000


Q ss_pred             ccEEEecc-------CccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304        311 VPILVLGL-------DNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL  376 (537)
Q Consensus       311 ~~L~llGl-------~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~  376 (537)
                      ..+..+|+       +...   ....+.+|||||+||+    ++|++++. +  |++++||  |++++..  ..+++.+.
T Consensus       127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~  199 (260)
T 2ghi_A          127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI----AIARCLLK-D--PKIVIFDEATSSLDSKTEYLFQKAVE  199 (260)
T ss_dssp             HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH----HHHHHHHH-C--CSEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHH
Confidence            00111111       1100   0123678999999999    99999997 5  8999999  9999332  22222222


Q ss_pred             h-cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        377 G-TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       377 ~-~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      + ..+.+++++ +|+......++ ++++++|+++..+.+.++.
T Consensus       200 ~l~~~~tviiv-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          200 DLRKNRTLIII-AHRLSTISSAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             HHTTTSEEEEE-CSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCCEEEEE-cCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            1 124567777 88887766544 8899999999888877763

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.81  E-value=4.1e-22  Score=209.57  Aligned_cols=206  Identities=13%  Similarity=0.100  Sum_probs=134.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++++.+.|+...                ..+...++|.+.+|++++|+||||||||||+++|+|.    +. ++|  
T Consensus        19 ~i~~~~l~~~y~~~~----------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~-~~G--   75 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGG----------------NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL----LN-TEG--   75 (390)
T ss_dssp             CEEEEEEEEESSSSS----------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC----SE-EEE--
T ss_pred             eEEEEEEEEEecCCC----------------eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC----CC-CCe--
Confidence            467788888874211                0123446688889999999999999999999999999    76 899  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.++| .+     .....  ...+++.+++|||++.+++. +     +.+           .+...... ...+...
T Consensus        76 --~I~i~G-~~-----i~~~~--~~~~rr~ig~v~Q~~~lf~~-t-----v~e-----------nl~~~~~~-~~~~v~~  127 (390)
T 3gd7_A           76 --EIQIDG-VS-----WDSIT--LEQWRKAFGVIPQKVFIFSG-T-----FRK-----------NLDPNAAH-SDQEIWK  127 (390)
T ss_dssp             --EEEESS-CB-----TTSSC--HHHHHHTEEEESCCCCCCSE-E-----HHH-----------HHCTTCCS-CHHHHHH
T ss_pred             --EEEECC-EE-----CCcCC--hHHHhCCEEEEcCCcccCcc-C-----HHH-----------Hhhhcccc-CHHHHHH
Confidence              898887 22     21111  12234779999999887642 1     111           11000000 0001112


Q ss_pred             cEEEeccCccCccchhhh-----------hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304        312 PILVLGLDNAGKSSIIKR-----------ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL  376 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~-----------LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~  376 (537)
                      .+..+|+.... ..++.+           |||||+||+    ++|++++. +  |++++||  |++++..  ..+++.+.
T Consensus       128 ~l~~~~L~~~~-~~~p~~l~~~i~~~g~~LSGGqrQRv----alARAL~~-~--P~lLLLDEPts~LD~~~~~~l~~~l~  199 (390)
T 3gd7_A          128 VADEVGLRSVI-EQFPGKLDFVLVDGGCVLSHGHKQLM----CLARSVLS-K--AKILLLDEPSAHLDPVTYQIIRRTLK  199 (390)
T ss_dssp             HHHHTTCHHHH-TTSTTGGGCEECTTTTTSCHHHHHHH----HHHHHHHT-T--CCEEEEESHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHH-hhcccccccccccccccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            22244444333 223444           999999999    99999996 5  8999999  9999432  22333333


Q ss_pred             hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      +. .+.+++++ +|+.+....++ +++|++|+++..|++.++.
T Consensus       200 ~~~~~~tvi~v-tHd~e~~~~aDri~vl~~G~i~~~g~~~el~  241 (390)
T 3gd7_A          200 QAFADCTVILC-EARIEAMLECDQFLVIEENKVRQYDSILELY  241 (390)
T ss_dssp             TTTTTSCEEEE-CSSSGGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred             HHhCCCEEEEE-EcCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            32 23566666 78876665555 9999999999999988874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.80  E-value=2.6e-21  Score=193.44  Aligned_cols=184  Identities=14%  Similarity=0.057  Sum_probs=123.7

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh-cc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG-TV  265 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~-~v  265 (537)
                      ..+++.+. |++++|+||||||||||+++|+|.    . |++|    +|.++| .++.  +.   ..     ++.++ ++
T Consensus        22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl----~-p~~G----~I~~~g-~~~~--~~---~~-----~~~i~~~v   80 (263)
T 2pjz_A           22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL----L-PYSG----NIFING-MEVR--KI---RN-----YIRYSTNL   80 (263)
T ss_dssp             EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS----S-CCEE----EEEETT-EEGG--GC---SC-----CTTEEECC
T ss_pred             EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC----C-CCCc----EEEECC-EECc--ch---HH-----hhheEEEe
Confidence            45678899 999999999999999999999999    9 9999    999987 3321  10   11     25689 99


Q ss_pred             ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeeccccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      +|++.+  ..+.     .+       ++..... .... ...+....+..+|+. ... ...+.+|||||+||+    ++
T Consensus        81 ~Q~~~l--~~tv-----~e-------nl~~~~~-~~~~-~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv----~l  139 (263)
T 2pjz_A           81 PEAYEI--GVTV-----ND-------IVYLYEE-LKGL-DRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLV----RT  139 (263)
T ss_dssp             GGGSCT--TSBH-----HH-------HHHHHHH-HTCC-CHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHH----HH
T ss_pred             CCCCcc--CCcH-----HH-------HHHHhhh-hcch-HHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHH----HH
Confidence            999774  2111     00       0000000 0000 001112233456776 443 445899999999999    99


Q ss_pred             ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhcCCEEEEEEeCCCcchhh--hh-hhhhhcCCcEEEEecccchh
Q psy16304        345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGTVSQTLLVSHSLSGRPDD--RC-QVYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~~~~vIlVvdshd~~~~~--~~-~i~ll~~G~ii~~g~nkdl~  417 (537)
                      |++++. +  |++++||  |+|++..  ..+++.+.+... +++++ +||.....  +. +++++++|+++..+.+.++.
T Consensus       140 AraL~~-~--p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviiv-tHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          140 SLALAS-Q--PEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILV-THELDMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             HHHHHT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEE-ESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHh-C--CCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEE-EcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            999996 5  8999999  9999433  333344433334 66666 78877654  34 57889999999888877763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.79  E-value=5e-21  Score=188.56  Aligned_cols=199  Identities=16%  Similarity=0.116  Sum_probs=123.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   .             .+..++++.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus         3 ~l~~~~l~~~y~~~~---~-------------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G--   60 (237)
T 2cbz_A            3 SITVRNATFTWARSD---P-------------PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE----MDKVEG--   60 (237)
T ss_dssp             CEEEEEEEEESCTTS---C-------------CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC----SEEEEE--
T ss_pred             eEEEEEEEEEeCCCC---C-------------ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc--
Confidence            467788888775310   0             012345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee--cCcccccCCcccccccCcCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM--CGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D--s~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                        +|.++|                     .+++++|++.++ ..+     +.+  .-.....  .+.....      ...
T Consensus        61 --~I~~~g---------------------~i~~v~Q~~~~~-~~t-----v~enl~~~~~~~--~~~~~~~------~~~  103 (237)
T 2cbz_A           61 --HVAIKG---------------------SVAYVPQQAWIQ-NDS-----LRENILFGCQLE--EPYYRSV------IQA  103 (237)
T ss_dssp             --EEEECS---------------------CEEEECSSCCCC-SEE-----HHHHHHTTSCCC--TTHHHHH------HHH
T ss_pred             --eEEECC---------------------EEEEEcCCCcCC-CcC-----HHHHhhCccccC--HHHHHHH------HHH
Confidence              888876                     166777775422 111     111  0000000  0000000      000


Q ss_pred             CccEEEeccCccC----ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--h--
Q psy16304        310 SVPILVLGLDNAG----KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--G--  377 (537)
Q Consensus       310 ~~~L~llGl~~~g----Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~--  377 (537)
                      ......++....+    ....+.+|||||+||+    ++|++++. +  |++++||  |+|++..  ..+++.+.  +  
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~~~  176 (237)
T 2cbz_A          104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV----SLARAVYS-N--ADIYLFDDPLSAVDAHVGKHIFENVIGPKGM  176 (237)
T ss_dssp             TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTSCHHHHHHHHHHTTSTTST
T ss_pred             HhhHHHHHhccccccccccCCCCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccCHHHHHHHHHHHHHHHhh
Confidence            0000011111100    1233678999999999    99999997 5  8999999  9999543  33344442  1  


Q ss_pred             cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      ..+.+++++ +|+......++ ++++++|+++..+.+.++.
T Consensus       177 ~~~~tviiv-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          177 LKNKTRILV-THSMSYLPQVDVIIVMSGGKISEMGSYQELL  216 (237)
T ss_dssp             TTTSEEEEE-CSCSTTGGGSSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCCEEEEE-ecChHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence            124566666 88887665544 8889999999888777663

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.79  E-value=5.2e-21  Score=187.42  Aligned_cols=202  Identities=15%  Similarity=0.187  Sum_probs=123.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++.+.|+...   .             .+-..+++.+.+|++++|+||||||||||+++|+|.    +.|++|  
T Consensus         6 ~l~~~~l~~~y~~~~---~-------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G--   63 (229)
T 2pze_A            6 EVVMENVTAFWEEGG---T-------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEG--   63 (229)
T ss_dssp             EEEEEEEEECSSTTS---C-------------CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             eEEEEEEEEEeCCCC---c-------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CcCCcc--
Confidence            467788888774210   0             012345677889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFR  309 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~  309 (537)
                        +|.++|                     .+++++|++.+++. +.  .+.+........   ..+.+... .+.     
T Consensus        64 --~i~~~g---------------------~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~---~~~~~~~~-~l~-----  110 (229)
T 2pze_A           64 --KIKHSG---------------------RISFCSQFSWIMPG-TIKENIIFGVSYDEYR---YRSVIKAC-QLE-----  110 (229)
T ss_dssp             --EEEECS---------------------CEEEECSSCCCCSB-CHHHHHHTTSCCCHHH---HHHHHHHT-TCH-----
T ss_pred             --EEEECC---------------------EEEEEecCCcccCC-CHHHHhhccCCcChHH---HHHHHHHh-CcH-----
Confidence              888875                     16677777664432 11  000000000000   00000000 000     


Q ss_pred             CccEEEeccCc-cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEE
Q psy16304        310 SVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQT  382 (537)
Q Consensus       310 ~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~v  382 (537)
                       ..+..+.... ..-...+.+|||||+||+    ++|++++. +  |++++||  |+|++...  .+++.+.+.  .+.+
T Consensus       111 -~~~~~~~~~~~~~~~~~~~~LSgGqkqrv----~lAral~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t  182 (229)
T 2pze_A          111 -EDISKFAEKDNIVLGEGGITLSGGQRARI----SLARAVYK-D--ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT  182 (229)
T ss_dssp             -HHHTTSTTGGGSCBCTTCTTSCHHHHHHH----HHHHHHHS-C--CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred             -HHHHhCcccccccccCCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence             0000000000 000112578999999999    99999996 5  8999999  99994433  333432221  2456


Q ss_pred             EEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304        383 LLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++++ +|+......++ ++++++|+++..+.+.++.
T Consensus       183 vi~v-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          183 RILV-TSKMEHLKKADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             EEEE-CCCHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEE-cCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            7777 89987765544 8899999999888776663

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.77  E-value=7.7e-21  Score=227.11  Aligned_cols=265  Identities=15%  Similarity=0.084  Sum_probs=171.2

Q ss_pred             hhhhHHHHHhhhcccccccccccccccCccccccccCCCCC----CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCC
Q psy16304         93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA----PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLS  168 (537)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~  168 (537)
                      -.-..|+..+...+..++.+..++++++++++.++.++++.    +|-..           ...+.++++++.|++..  
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~-----------~g~i~~~~v~~~y~~~~--  401 (1284)
T 3g5u_A          335 LIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI-----------QGNLEFKNIHFSYPSRK--  401 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTC-----------CCCEEEEEEEECCSSTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCC-----------CCeEEEEEEEEEcCCCC--
Confidence            34467899999999999999999999999988665443211    11111           22467788888776431  


Q ss_pred             CCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeec
Q psy16304        169 DDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL  248 (537)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~  248 (537)
                       +            ..+-.++++.+++|++++|||+||||||||+++|.|.    +.|+.|    +|.++| .++..++.
T Consensus       402 -~------------~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~----~~~~~G----~i~i~g-~~i~~~~~  459 (1284)
T 3g5u_A          402 -E------------VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL----YDPLDG----MVSIDG-QDIRTINV  459 (1284)
T ss_dssp             -S------------CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS----SCCSEE----EEEETT-EEGGGSCH
T ss_pred             -C------------CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEHHhCCH
Confidence             0            0123456788889999999999999999999999999    999999    999997 54432221


Q ss_pred             CCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCcc
Q psy16304        249 GGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKS  324 (537)
Q Consensus       249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs  324 (537)
                             ..++..+++|+|++.++.. ..+++.+... .+.++   +.+.+.... .      ...+..+  |+...- .
T Consensus       460 -------~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~---~~~~~~~~~-~------~~~i~~l~~g~~t~~-~  521 (1284)
T 3g5u_A          460 -------RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE---IEKAVKEAN-A------YDFIMKLPHQFDTLV-G  521 (1284)
T ss_dssp             -------HHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHH---HHHHHHHTT-C------HHHHHHSTTGGGCCC-S
T ss_pred             -------HHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHH---HHHHHHHhC-c------HHHHHhccccccccc-c
Confidence                   2344779999999987754 1122111100 00000   000000000 0      0000000  111100 1


Q ss_pred             chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh--cCCEEEEEEeCCCcchhhhhh-
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG--TVSQTLLVSHSLSGRPDDRCQ-  398 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~--~~~~vIlVvdshd~~~~~~~~-  398 (537)
                      .....|||||+||+    ++|++++. +  |++++||  |++++...+.+ ...++  ..+.+++++ +|+......++ 
T Consensus       522 ~~g~~LSgGq~Qri----aiARal~~-~--p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~i~~~d~  593 (1284)
T 3g5u_A          522 ERGAQLSGGQKQRI----AIARALVR-N--PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI-AHRLSTVRNADV  593 (1284)
T ss_dssp             SSSCSSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEE-CSCHHHHTTCSE
T ss_pred             CCCCccCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCE
Confidence            11456999999999    99999997 5  8999999  99995443322 22221  124577777 89998887766 


Q ss_pred             hhhhcCCcEEEEecccchhh
Q psy16304        399 VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       399 i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ++++++|+++..|++.++..
T Consensus       594 i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          594 IAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             EEECSSSCCCCEECHHHHHH
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999988754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.76  E-value=1.9e-20  Score=223.78  Aligned_cols=261  Identities=14%  Similarity=0.036  Sum_probs=163.9

Q ss_pred             hHHHHHhhhcccccccccccccccCccccccccCCCCC----CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304         96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA----PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP  171 (537)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~  171 (537)
                      ..|+..+...+..++....+++++.++++.++...++.    +|-..           ...+.++++...|+...   + 
T Consensus       981 ~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~-----------~g~i~~~~v~~~y~~~~---~- 1045 (1284)
T 3g5u_A          981 AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNML-----------EGNVQFSGVVFNYPTRP---S- 1045 (1284)
T ss_dssp             HHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTT-----------SCCEEEEEEEBCCSCGG---G-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCC-----------CCcEEEEEEEEECCCCC---C-
Confidence            46778888888888888888888888877554332211    11111           22456677777665321   0 


Q ss_pred             CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                                 ..+..++++.+.+|+++||+|+||||||||+++|.|.    +.|+.|    +|.++| .++.     ..
T Consensus      1046 -----------~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~----~~p~~G----~I~i~g-~~i~-----~~ 1100 (1284)
T 3g5u_A         1046 -----------IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF----YDPMAG----SVFLDG-KEIK-----QL 1100 (1284)
T ss_dssp             -----------CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS----SCCSEE----EEESSS-SCTT-----SS
T ss_pred             -----------CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-EEcc-----cC
Confidence                       1123456788999999999999999999999999999    999999    999887 3321     11


Q ss_pred             chhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCccccc------ccCcCCccccCCccEEEeccCccCcc
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELT------SATHLPLVDFRSVPILVLGLDNAGKS  324 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~------~~~~l~~~~~~~~~L~llGl~~~gKs  324 (537)
                      .  ...++..+++|+|++.++.. ..+++.+.........+.+.+.+.      .+..+.....     ..+|.      
T Consensus      1101 ~--~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gld-----t~vge------ 1167 (1284)
T 3g5u_A         1101 N--VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN-----TRVGD------ 1167 (1284)
T ss_dssp             C--HHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGG-----CBCST------
T ss_pred             C--HHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccc-----cccCC------
Confidence            1  12345789999999976643 111111100000000000000000      0011100000     01221      


Q ss_pred             chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-  398 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-  398 (537)
                       ....|||||+||+    ++|++++. +  |++++||  |++++...  .+.+.+.+ ..+.+++++ +|++.+...++ 
T Consensus      1168 -~G~~LSgGq~Qrv----~iARal~~-~--p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~i-sH~l~~i~~~dr 1238 (1284)
T 3g5u_A         1168 -KGTQLSGGQKQRI----AIARALVR-Q--PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI-AHRLSTIQNADL 1238 (1284)
T ss_dssp             -TSCSSCHHHHHHH----HHHHHHHH-C--CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEE-CSCTTGGGSCSE
T ss_pred             -CCCccCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEE-ecCHHHHHcCCE
Confidence             1346999999999    99999997 5  8999999  99994332  23333322 224567777 89998887666 


Q ss_pred             hhhhcCCcEEEEecccchhh
Q psy16304        399 VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       399 i~ll~~G~ii~~g~nkdl~~  418 (537)
                      +++|++|+++..|++.++.+
T Consensus      1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             EEEEETBEEEEEECHHHHHH
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999988854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.74  E-value=1.2e-19  Score=183.89  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|++++|+||||||||||+++|+|.    +.|++|    +|.++|                     .+++++
T Consensus        55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~I~~~g---------------------~i~~v~  105 (290)
T 2bbs_A           55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEG----KIKHSG---------------------RISFCS  105 (290)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS----SCEEEE----EEECCS---------------------CEEEEC
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEECC---------------------EEEEEe
Confidence            345677889999999999999999999999999    999999    888765                     267777


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccC--CcccccccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSG--IPDELTSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~--l~~~l~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |++.++.. +.     .+ -.......  ....+... ++.      ..+..+... .......+.+|||||+||+    
T Consensus       106 Q~~~l~~~-tv-----~enl~~~~~~~~~~~~~~~~~-~l~------~~l~~~~~~~~~~~~~~~~~LSgGq~QRv----  168 (290)
T 2bbs_A          106 QNSWIMPG-TI-----KENIIGVSYDEYRYRSVIKAC-QLE------EDISKFAEKDNIVLGEGGITLSGGQRARI----  168 (290)
T ss_dssp             SSCCCCSS-BH-----HHHHHTTCCCHHHHHHHHHHT-TCH------HHHHTSTTGGGCBC----CCCCHHHHHHH----
T ss_pred             CCCccCcc-cH-----HHHhhCcccchHHHHHHHHHh-ChH------HHHHhccccccchhcCccCcCCHHHHHHH----
Confidence            77665432 11     01 00000000  00000000 000      000000000 0000112568999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc--CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccc
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkd  415 (537)
                      ++|++++. +  |++++||  |+|++..  ..+++.+.+.  .+.+++++ +|+......++ ++++++|+++..+.+.+
T Consensus       169 ~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviiv-tHd~~~~~~~d~i~~l~~G~i~~~g~~~~  244 (290)
T 2bbs_A          169 SLARAVYK-D--ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV-TSKMEHLKKADKILILHEGSSYFYGTFSE  244 (290)
T ss_dssp             HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEE-CCCHHHHHHSSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHC-C--CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCHHHHHcCCEEEEEECCeEEEeCCHHH
Confidence            99999996 5  8999999  9999433  3333432221  24567777 89987765544 88999999998888776


Q ss_pred             h
Q psy16304        416 L  416 (537)
Q Consensus       416 l  416 (537)
                      +
T Consensus       245 l  245 (290)
T 2bbs_A          245 L  245 (290)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.67  E-value=2.5e-18  Score=190.54  Aligned_cols=173  Identities=13%  Similarity=0.123  Sum_probs=116.6

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +.+.+|+++||+||||||||||+++|+|.    ..|+.|    +|.+.                     ..+++++|++.
T Consensus       377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~I~~~---------------------~~i~~v~Q~~~  427 (607)
T 3bk7_A          377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEG----KVEWD---------------------LTVAYKPQYIK  427 (607)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBS----CCCCC---------------------CCEEEECSSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEEe---------------------eEEEEEecCcc
Confidence            34578999999999999999999999999    999999    44321                     23788888765


Q ss_pred             CCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304        271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR  348 (537)
Q Consensus       271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al  348 (537)
                      .....+.                .+.+...  ..+.........+..+|+.... ...+.+|||||+||+    ++|+++
T Consensus       428 ~~~~~tv----------------~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv----~iAraL  486 (607)
T 3bk7_A          428 AEYEGTV----------------YELLSKIDSSKLNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRV----AIAATL  486 (607)
T ss_dssp             CCCSSBH----------------HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHH----HHHHHH
T ss_pred             CCCCCcH----------------HHHHHhhhccCCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHH
Confidence            3322111                0000000  0000011122334466776544 455899999999999    999999


Q ss_pred             eccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccchh
Q psy16304        349 VEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNLS  417 (537)
Q Consensus       349 l~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl~  417 (537)
                      +. +  |++++||  |+|++..     ..+++.+.++.+.+++++ +||..+....+  ++++++  |.+...+++.++.
T Consensus       487 ~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v-sHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~  562 (607)
T 3bk7_A          487 LR-D--ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-EHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR  562 (607)
T ss_dssp             TS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             Hh-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence            96 5  8999999  9999332     233344444445677777 89998887544  777774  7777778887764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.67  E-value=6e-18  Score=185.10  Aligned_cols=177  Identities=13%  Similarity=0.055  Sum_probs=110.1

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      ++.+.+|+++||+|+||||||||+++|+|.    ..|++|    +|.+.+ ..                   +++++|+.
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~~-~~-------------------i~~~~q~~  339 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGE----ITADEG----SVTPEK-QI-------------------LSYKPQRI  339 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSBC----CEESSC-CC-------------------EEEECSSC
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-ee-------------------eEeechhc
Confidence            445679999999999999999999999999    999999    776654 22                   34444443


Q ss_pred             CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304        270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV  349 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all  349 (537)
                      ......+.     .+    .......  .....  ........+..+|+.... ...+.+|||||+||+    ++|++++
T Consensus       340 ~~~~~~tv-----~~----~l~~~~~--~~~~~--~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv----~iAraL~  401 (538)
T 3ozx_A          340 FPNYDGTV-----QQ----YLENASK--DALST--SSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKL----YIAATLA  401 (538)
T ss_dssp             CCCCSSBH-----HH----HHHHHCS--STTCT--TSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHH----HHHHHHH
T ss_pred             ccccCCCH-----HH----HHHHhhh--hccch--hHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH----HHHHHHH
Confidence            21110000     00    0000000  00000  000011222345655443 455899999999999    9999999


Q ss_pred             ccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccch
Q psy16304        350 EYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNL  416 (537)
Q Consensus       350 ~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl  416 (537)
                      . +  |++++||  |+|++..     ..+++.+.++.+.+++++ +||...+...+  +++|+.  +.....+.+.++
T Consensus       402 ~-~--p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~v-sHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~  475 (538)
T 3ozx_A          402 K-E--ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-DHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL  475 (538)
T ss_dssp             S-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             c-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence            6 5  8999999  9999432     233345545556778888 89999887644  777764  444444444444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.67  E-value=2.7e-18  Score=188.02  Aligned_cols=174  Identities=13%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      ++.+.+|+++||+|+||||||||+++|+|.    ..|+.|    +|.+.                     ..+++++|+.
T Consensus       306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~i~~~---------------------~~i~~v~Q~~  356 (538)
T 1yqt_A          306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEG----KIEWD---------------------LTVAYKPQYI  356 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBC----CCCCC---------------------CCEEEECSSC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEEC---------------------ceEEEEecCC
Confidence            344579999999999999999999999999    999999    44321                     2377888876


Q ss_pred             CCCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304        270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  347 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a  347 (537)
                      ......+.     .+           .+...  ..+.........+..+|+.... ...+.+|||||+||+    ++|++
T Consensus       357 ~~~~~~tv-----~~-----------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv----~lAra  415 (538)
T 1yqt_A          357 KADYEGTV-----YE-----------LLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRV----AIAAT  415 (538)
T ss_dssp             CCCCSSBH-----HH-----------HHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHH----HHHHH
T ss_pred             cCCCCCcH-----HH-----------HHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----HHHHH
Confidence            53222111     00           00000  0000001112223345665433 455899999999999    99999


Q ss_pred             eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccch
Q psy16304        348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNL  416 (537)
Q Consensus       348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl  416 (537)
                      ++. +  |++++||  |+|++..     ...++.+.++.+.+++++ +||..+....+  +++|++  |.+...+.+.++
T Consensus       416 L~~-~--p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v-sHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~  491 (538)
T 1yqt_A          416 LLR-D--ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-EHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGM  491 (538)
T ss_dssp             HTS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCcceEeecCCHHHH
Confidence            996 4  8999999  9999332     233344443345677777 89998887644  777774  677777887776


Q ss_pred             h
Q psy16304        417 S  417 (537)
Q Consensus       417 ~  417 (537)
                      .
T Consensus       492 ~  492 (538)
T 1yqt_A          492 R  492 (538)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.65  E-value=5.1e-17  Score=182.62  Aligned_cols=213  Identities=13%  Similarity=-0.012  Sum_probs=110.4

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHH---------------------HHHhCCCCccccCceeeeeEEEEECCcEEE
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSII---------------------KRILGEPIISLVPTVGFNRARVEYGNKYEV  243 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL---------------------~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i  243 (537)
                      +..+++|.+.+|+++||+||||||||||+                     +++.|.    ..|+.|    .+...+ ..+
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l----~~~~~~----~i~~~~-~~i  103 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM----EKPDVD----AIEGLS-PAI  103 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC------------------CCCS----EEESCC-CEE
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccc----ccCCcc----ceeccc-cce
Confidence            45567788999999999999999999997                     666666    677766    554332 122


Q ss_pred             EEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCc--ccccCCcccccccCcCC---ccccC-----C--
Q psy16304        244 FLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGV--HQVSGIPDELTSATHLP---LVDFR-----S--  310 (537)
Q Consensus       244 ~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~--~~~~~l~~~l~~~~~l~---~~~~~-----~--  310 (537)
                      .+.+.   . .....+..+++++|...++......+..+.. ...  .....+.+.+.....+.   .....     .  
T Consensus       104 ~~~~~---~-~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~  179 (670)
T 3ux8_A          104 SIDQK---T-TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREI  179 (670)
T ss_dssp             EESSC---C------CCBHHHHTTCC-------------------------CC--------------------------C
T ss_pred             EecCc---h-hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHH
Confidence            21111   1 1111124567777765433221111111100 000  00000111111110000   00000     0  


Q ss_pred             ----ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcC
Q psy16304        311 ----VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTV  379 (537)
Q Consensus       311 ----~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~  379 (537)
                          ..+..+|+........+.+|||||+||+    ++|++++..++ |++++||  |+|++     .+..+++.+.+. 
T Consensus       180 ~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv----~iArAL~~~p~-~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-  253 (670)
T 3ux8_A          180 RDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRI----RLATQIGSRLT-GVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-  253 (670)
T ss_dssp             HHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHH----HHHHHHHTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCchhhhcCCcccCCHHHHHHH----HHHHHHhhCCC-CCEEEEECCccCCCHHHHHHHHHHHHHHHHc-
Confidence                0133466655433566899999999999    99999997332 3499999  99992     233333454333 


Q ss_pred             CEEEEEEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||+.....++ ++++      ++|+++..++++++.
T Consensus       254 g~tvi~v-tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          254 GNTLIVV-EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             TCEEEEE-CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             CCEEEEE-eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence            5677777 89988766555 7777      899999999888764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.3e-17  Score=182.61  Aligned_cols=179  Identities=12%  Similarity=0.092  Sum_probs=115.9

Q ss_pred             cccccCCCC-----CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        188 HLSLFDFRS-----VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       188 ~~~l~~~~G-----~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      .++|.+.+|     +++||+|+||||||||+++|+|.    ..|+.|    +. +.+                    ..+
T Consensus       365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl----~~p~~G----~~-~~~--------------------~~i  415 (608)
T 3j16_B          365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA----LKPDEG----QD-IPK--------------------LNV  415 (608)
T ss_dssp             SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS----SCCSBC----CC-CCS--------------------CCE
T ss_pred             ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC----CCCCCC----cC-ccC--------------------CcE
Confidence            456666666     88999999999999999999999    999999    21 000                    235


Q ss_pred             hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      ++++|+.......+.     .+       .+..  ...............+..+|+.+.. ...+.+|||||+||+    
T Consensus       416 ~~~~q~~~~~~~~tv-----~e-------~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv----  476 (608)
T 3j16_B          416 SMKPQKIAPKFPGTV-----RQ-------LFFK--KIRGQFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRV----  476 (608)
T ss_dssp             EEECSSCCCCCCSBH-----HH-------HHHH--HCSSTTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHH----
T ss_pred             EEecccccccCCccH-----HH-------HHHH--HhhcccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----
Confidence            666665432111110     00       0000  0000000001112234456666554 455899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEe
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLI  411 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g  411 (537)
                      ++|++++. +  |++++||  |+|++..     ..+++.+.++.+.+++++ +||..+....+  ++++++  |+++..+
T Consensus       477 ~iAraL~~-~--p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviiv-tHdl~~~~~~aDrvivl~~~~g~~~~~g  552 (608)
T 3j16_B          477 AIVLALGI-P--ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV-EHDFIMATYLADKVIVFEGIPSKNAHAR  552 (608)
T ss_dssp             HHHHHTTS-C--CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-CSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred             HHHHHHHh-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence            99999996 5  8999999  9999422     233345444445677777 89998887644  777875  8899999


Q ss_pred             cccchhh
Q psy16304        412 SAKNLSN  418 (537)
Q Consensus       412 ~nkdl~~  418 (537)
                      ++.++..
T Consensus       553 ~p~~~~~  559 (608)
T 3j16_B          553 APESLLT  559 (608)
T ss_dssp             CCEEHHH
T ss_pred             ChHHHhh
Confidence            9988754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.61  E-value=4.6e-17  Score=180.48  Aligned_cols=180  Identities=13%  Similarity=0.162  Sum_probs=105.2

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe-ecCCCc--hh-hHHH--Hhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY-DLGGSE--DF-RTIW--KQY  261 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~-D~~G~~--~~-r~~~--~~~  261 (537)
                      +++ .+.+|+++||+|+||||||||+++|+|.    +.|+.|    ++. .+ .. ... ...|..  .. ....  ...
T Consensus       110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl----l~p~~G----~~~-~~-~~-~~~~~~~G~~~~~~~~~~~~~~~~  177 (607)
T 3bk7_A          110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ----LIPNLC----EDN-DS-WD-NVIRAFRGNELQNYFERLKNGEIR  177 (607)
T ss_dssp             CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS----SCCCTT----TTC-CC-HH-HHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred             CCC-CCCCCCEEEEECCCCChHHHHHHHHhCC----CCCCCC----ccc-cc-cc-hhhheeCCEehhhhhhhhhhhhcc
Confidence            345 5789999999999999999999999999    999999    310 00 00 000 011111  00 0000  012


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +++++|.....+....             ..+.+.+...   ....+....+..+|+.... ...+.+|||||+||+   
T Consensus       178 i~~~~q~~~~~~~~~~-------------~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~-~~~~~~LSGGekQRv---  237 (607)
T 3bk7_A          178 PVVKPQYVDLLPKAVK-------------GKVRELLKKV---DEVGKFEEVVKELELENVL-DRELHQLSGGELQRV---  237 (607)
T ss_dssp             CEEECSCGGGGGGTCC-------------SBHHHHHHHT---CCSSCHHHHHHHTTCTTGG-GSBGGGCCHHHHHHH---
T ss_pred             eEEeechhhhchhhcc-------------ccHHHHhhhh---HHHHHHHHHHHHcCCCchh-CCChhhCCHHHHHHH---
Confidence            3344444221110000             0011111100   0111223345567877654 555899999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN  405 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G  405 (537)
                       ++|++++. +  |++++||  |++++..     ..+++.+.+. +.+++++ +||+......+  +++++++
T Consensus       238 -aIAraL~~-~--P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIiv-sHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          238 -AIAAALLR-K--AHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV-EHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             -HHHHHHHS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCHHHHHHHCSEEEEEESC
T ss_pred             -HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEE-ecChHHHHhhCCEEEEECCC
Confidence             99999996 5  8999999  9999433     3334555443 5677777 89988876543  6677643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.60  E-value=2.6e-17  Score=189.23  Aligned_cols=94  Identities=13%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             cEEEeccCccC-ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAG-KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~g-Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvd  387 (537)
                      .+..+|+.... ....+.+|||||+||+    +++++++. +  |++++||  |+|++.... .+...++..+++++++ 
T Consensus       883 ~Le~lGL~~~~~~~~~~~~LSGGQkQRV----aLArAL~~-~--P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiI-  954 (986)
T 2iw3_A          883 HCSMLGLDPEIVSHSRIRGLSGGQKVKL----VLAAGTWQ-R--PHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIII-  954 (986)
T ss_dssp             HHHHTTCCHHHHHHSCGGGCCHHHHHHH----HHHHHHTT-C--CSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEE-
T ss_pred             HHHHcCCCchhhcCCCccccCHHHHHHH----HHHHHHHh-C--CCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEE-
Confidence            34456765321 2445889999999999    99999996 4  8999999  999954332 2234444545677777 


Q ss_pred             CCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304        388 SLSGRPDDRCQ--VYLMSCNCQVYLISA  413 (537)
Q Consensus       388 shd~~~~~~~~--i~ll~~G~ii~~g~n  413 (537)
                      +||.++....+  ++++++|+++..|.+
T Consensus       955 SHD~e~v~~l~DrVivL~~G~Iv~~G~~  982 (986)
T 2iw3_A          955 THSAEFTKNLTEEVWAVKDGRMTPSGHN  982 (986)
T ss_dssp             CSCHHHHTTTCCEEECCBTTBCCC----
T ss_pred             ECCHHHHHHhCCEEEEEECCEEEEeCCc
Confidence            99998876544  899999998776654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.59  E-value=8.5e-17  Score=176.19  Aligned_cols=177  Identities=14%  Similarity=0.140  Sum_probs=104.6

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe-ecCCCchhhH----HH--Hhh
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY-DLGGSEDFRT----IW--KQY  261 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~-D~~G~~~~r~----~~--~~~  261 (537)
                      ++ .+.+|+++||+|+||||||||+++|+|.    +.|+.|    ++. .. .. ... ...|.. ...    ..  ...
T Consensus        41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl----~~p~~G----~~~-~~-~~-~~~~~~~g~~-~~~~~~~~~~~~~~  107 (538)
T 1yqt_A           41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ----LIPNLC----GDN-DS-WD-GVIRAFRGNE-LQNYFEKLKNGEIR  107 (538)
T ss_dssp             CC-CCCTTSEEEEECCTTSSHHHHHHHHHTS----SCCCTT----TTC-CS-HH-HHHHHTTTST-HHHHHHHHHTTSCC
T ss_pred             cC-cCCCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----ccC-cc-hh-hhHHhhCCcc-HHHHHHHHHHHhhh
Confidence            45 5779999999999999999999999999    899999    310 00 00 000 011111 100    00  012


Q ss_pred             hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +++++|.....+....             ..+.+.+...   ....+....+..+|+.... ...+.+|||||+||+   
T Consensus       108 ~~~~~q~~~~~~~~~~-------------~~v~e~~~~~---~~~~~~~~~l~~lgl~~~~-~~~~~~LSgGekQRv---  167 (538)
T 1yqt_A          108 PVVKPQYVDLIPKAVK-------------GKVIELLKKA---DETGKLEEVVKALELENVL-EREIQHLSGGELQRV---  167 (538)
T ss_dssp             CEEECSCGGGSGGGCC-------------SBHHHHHHHH---CSSSCHHHHHHHTTCTTTT-TSBGGGCCHHHHHHH---
T ss_pred             hhhhhhhhhhcchhhh-------------ccHHHHHhhh---hHHHHHHHHHHHcCCChhh-hCChhhCCHHHHHHH---
Confidence            3444444321111000             0011111000   0111223345567876654 555999999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC  404 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~  404 (537)
                       ++|++++. +  |++++||  |++++..     ..+++.+.+ .+.+++++ +||+.....++  ++++++
T Consensus       168 -~iAraL~~-~--P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~v-sHd~~~~~~~~dri~vl~~  233 (538)
T 1yqt_A          168 -AIAAALLR-N--ATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-EHDLAVLDYLSDIIHVVYG  233 (538)
T ss_dssp             -HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-CSCHHHHHHHCSEEEEEEE
T ss_pred             -HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhCCEEEEEcC
Confidence             99999996 5  8999999  9999432     333355544 35677777 89998887654  666654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.55  E-value=3.4e-16  Score=171.20  Aligned_cols=83  Identities=11%  Similarity=0.062  Sum_probs=59.5

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIl  384 (537)
                      .+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |++++..     ..+++.+. . +.+++
T Consensus       122 ~l~~l~l~~~~-~~~~~~LSgGe~Qrv----~iA~aL~~-~--p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii  191 (538)
T 3ozx_A          122 VKELLNMTNLW-NKDANILSGGGLQRL----LVAASLLR-E--ADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVI  191 (538)
T ss_dssp             HHHHTTCGGGT-TSBGGGCCHHHHHHH----HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEE
T ss_pred             HHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEE
Confidence            34466776554 455899999999999    99999996 5  8999999  9999433     22234442 3 46777


Q ss_pred             EEeCCCcchhhhhh--hhhhcCC
Q psy16304        385 VSHSLSGRPDDRCQ--VYLMSCN  405 (537)
Q Consensus       385 Vvdshd~~~~~~~~--i~ll~~G  405 (537)
                      ++ +||+.....++  ++++++|
T Consensus       192 ~v-sHdl~~~~~~~d~i~vl~~~  213 (538)
T 3ozx_A          192 VV-DHDLIVLDYLTDLIHIIYGE  213 (538)
T ss_dssp             EE-CSCHHHHHHHCSEEEEEEEE
T ss_pred             EE-EeChHHHHhhCCEEEEecCC
Confidence            77 89998877655  6666543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.55  E-value=9.6e-15  Score=155.95  Aligned_cols=209  Identities=21%  Similarity=0.307  Sum_probs=122.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCCCc--------hhhHHHHhhhhcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSE--------DFRTIWKQYLGTV  265 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G~~--------~~r~~~~~~i~~v  265 (537)
                      .+|+|||++|+|||||++.|+|..++.+.++.|+|++.....   ++..+.+||++|+.        .++..+...+.. 
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~-   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE-   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh-
Confidence            479999999999999999999987777788899887654422   24789999999985        344444444444 


Q ss_pred             ccCCCCCCCccceeeEEee-cCccc-----------------------c------cCCcccccc-cCc------------
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------V------SGIPDELTS-ATH------------  302 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~------~~l~~~l~~-~~~------------  302 (537)
                                ++++++++| .+...                       .      ....+.... +..            
T Consensus        83 ----------ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           83 ----------ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             ----------CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred             ----------CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCCh
Confidence                      777777877 22100                       0      000000000 000            


Q ss_pred             ----------CCc-----cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecC
Q psy16304        303 ----------LPL-----VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLG  363 (537)
Q Consensus       303 ----------l~~-----~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~  363 (537)
                                +..     .......+.++|.+++||+++++.|.++++..+++..++++.    .+..++ ..+.+|||+
T Consensus       153 ~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~  231 (436)
T 2hjg_A          153 GDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTA  231 (436)
T ss_dssp             HHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHH
T ss_pred             HHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECC
Confidence                      000     000124677999999999999999999987766655554443    233344 689999999


Q ss_pred             ch----------hhHHHHHH-HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        364 GS----------EDFRTIWK-QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       364 Gl----------~~~~~l~~-~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      |+          +.+..++. .+++.++++++|+|..+..+.....  ..+.+.|..+....|| |+.
T Consensus       232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~  299 (436)
T 2hjg_A          232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV  299 (436)
T ss_dssp             HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence            98          55555543 5677889999999998877665544  3344578888888888 774

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.52  E-value=4.2e-14  Score=151.82  Aligned_cols=210  Identities=21%  Similarity=0.323  Sum_probs=128.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCC--------CchhhHHHHhhhhc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGG--------SEDFRTIWKQYLGT  264 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G--------~~~~r~~~~~~i~~  264 (537)
                      -.+|+|||++|||||||++.|+|..++...++.|+|++.....   ++..+.+||++|        ++.++..+...+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  102 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE  102 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence            4689999999999999999999987666778889877654432   247899999999        44555555555554


Q ss_pred             cccCCCCCCCccceeeEEee-cCcc-c----------------------c------cCCcccc-----------------
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM-CGVH-Q----------------------V------SGIPDEL-----------------  297 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D-s~~~-~----------------------~------~~l~~~l-----------------  297 (537)
                                 ++++++++| .... .                      .      ....+.+                 
T Consensus       103 -----------ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          103 -----------ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             -----------CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT
T ss_pred             -----------CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc
Confidence                       777777777 2110 0                      0      0000000                 


Q ss_pred             -----ccc-CcCC-----ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEec
Q psy16304        298 -----TSA-THLP-----LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDL  362 (537)
Q Consensus       298 -----~~~-~~l~-----~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT  362 (537)
                           ..+ ..+.     ........+.++|.+++||+++++.|.+..+..+.+..++++.    .+..++ ..+.+|||
T Consensus       172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~l~DT  250 (456)
T 4dcu_A          172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDT  250 (456)
T ss_dssp             HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-EEEEETTG
T ss_pred             hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-ceEEEEEC
Confidence                 000 0000     0001224567999999999999999998887766665555443    333355 78999999


Q ss_pred             Cc----------hhhHHHHHH-HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        363 GG----------SEDFRTIWK-QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       363 ~G----------l~~~~~l~~-~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +|          ++.+..++. .+++.++++++|+|..+........  .++.+.|+++....|| |+.
T Consensus       251 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          251 AGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV  319 (456)
T ss_dssp             GGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             CCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence            99          566666654 4778899999999888754433333  3445678888888888 774

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.51  E-value=4.9e-16  Score=174.59  Aligned_cols=97  Identities=10%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEe
Q psy16304        315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       315 llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .+|+........+.+|||||+||+    ++|++++..+++|++++||  |+|++     .+..+++.+.+. +.+++++ 
T Consensus       529 ~~~l~~~~~~~~~~~LSgG~~qrv----~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~v-  602 (670)
T 3ux8_A          529 DVGLGYMKLGQPATTLSGGEAQRV----KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI-  602 (670)
T ss_dssp             HTTCTTSBTTCCGGGCCHHHHHHH----HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-
T ss_pred             HcCCchhhccCCchhCCHHHHHHH----HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE-
Confidence            455543333456899999999999    9999998732126899999  99993     223333444433 5677777 


Q ss_pred             CCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        388 SLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       388 shd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      +||+.....++ +++|      ++|+++..|++.++.
T Consensus       603 tHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          603 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             CCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             eCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence            89988776555 8888      899999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.50  E-value=8.6e-16  Score=170.10  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vI  383 (537)
                      ..+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |++++...  .+   ++.+.+. +.++
T Consensus       204 ~~l~~~gl~~~~-~~~~~~LSgGe~Qrv----~iAraL~~-~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tv  274 (608)
T 3j16_B          204 RYIKILQLENVL-KRDIEKLSGGELQRF----AIGMSCVQ-E--ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYV  274 (608)
T ss_dssp             HHHHHHTCTGGG-GSCTTTCCHHHHHHH----HHHHHHHS-C--CSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEE
T ss_pred             HHHHHcCCcchh-CCChHHCCHHHHHHH----HHHHHHHh-C--CCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence            345567877654 455899999999999    99999996 5  8999999  99994332  22   2333333 4567


Q ss_pred             EEEeCCCcchhhhhh--hhhhcCCc
Q psy16304        384 LVSHSLSGRPDDRCQ--VYLMSCNC  406 (537)
Q Consensus       384 lVvdshd~~~~~~~~--i~ll~~G~  406 (537)
                      +++ +|++......+  +++++.+.
T Consensus       275 i~v-tHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          275 ICV-EHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             EEE-CSCHHHHHHHCSEEEEEESCT
T ss_pred             EEE-eCCHHHHHHhCCEEEEEeCCc
Confidence            777 89998887654  77776654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.49  E-value=1.9e-15  Score=173.82  Aligned_cols=176  Identities=16%  Similarity=0.122  Sum_probs=109.2

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      +-.+++|.+.+|++++|+|+||||||||+++|+|..   +   .|           .     +..  ..      ..+++
T Consensus       450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~---i---~g-----------~-----~~~--~~------~~~~~  499 (986)
T 2iw3_A          450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ---V---DG-----------F-----PTQ--EE------CRTVY  499 (986)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC---S---TT-----------C-----CCT--TT------SCEEE
T ss_pred             eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---c---CC-----------C-----ccc--cc------eeEEE
Confidence            345677889999999999999999999999999641   1   12           0     000  00      11345


Q ss_pred             cccCC-CCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        265 VSQTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       265 v~Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      ++|+. .++...+.                .+.+.. ....  ..+....+..+|+........+.+|||||+||+    
T Consensus       500 v~q~~~~~~~~ltv----------------~e~l~~~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRv----  557 (986)
T 2iw3_A          500 VEHDIDGTHSDTSV----------------LDFVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL----  557 (986)
T ss_dssp             TTCCCCCCCTTSBH----------------HHHHHTTCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHH----
T ss_pred             EcccccccccCCcH----------------HHHHHHhhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHH----
Confidence            55543 21211111                000000 0000  111223344567642223455899999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE-Eecccch
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY-LISAKNL  416 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~-~g~nkdl  416 (537)
                      +++++++. +  |++++||  |+|++.....| .++++..+.+++++ +||+.+....+  ++++++|+++. .|...++
T Consensus       558 aLArAL~~-~--P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIiv-SHdl~~l~~~adrii~L~~G~iv~~~G~~~e~  633 (986)
T 2iw3_A          558 ALARAVLR-N--ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITI-SHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF  633 (986)
T ss_dssp             HHHHHHHT-T--CSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred             HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence            99999996 5  8999999  99995443333 44444345677777 99998887654  88899999874 4544454

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.47  E-value=3.2e-15  Score=160.49  Aligned_cols=182  Identities=13%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE-EEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR-VEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~-i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      ++.+.+|++++|+||||||||||+++|+|.    ..|+.|+   + +.+++       |      .+    +.+++++|+
T Consensus       132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl----~~p~~G~---~pI~vdg-------~------~~----~~i~~vpq~  187 (460)
T 2npi_A          132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSY----ALKFNAY---QPLYINL-------D------PQ----QPIFTVPGC  187 (460)
T ss_dssp             HHHSSSCCCEEEEESTTSSHHHHHHHHHHT----THHHHCC---CCEEEEC-------C------TT----SCSSSCSSC
T ss_pred             ceEeCCCCEEEEECCCCCCHHHHHHHHhCc----ccccCCc---eeEEEcC-------C------cc----CCeeeeccc
Confidence            455679999999999999999999999999    8888881   1 44333       1      12    568899998


Q ss_pred             CCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc-
Q psy16304        269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA-  347 (537)
Q Consensus       269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a-  347 (537)
                      ..++.....     .+ .   .+++ .............+....+..+|+....+   ..+|||||+||+    +++++ 
T Consensus       188 ~~l~~~~~~-----~t-v---~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrl----alAra~  250 (460)
T 2npi_A          188 ISATPISDI-----LD-A---QLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQL----GQVVGQ  250 (460)
T ss_dssp             CEEEECCSC-----CC-T---TCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHH----HHHHHH
T ss_pred             hhhcccccc-----cc-h---hhhh-cccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHH----HHHHHH
Confidence            653211000     00 0   0011 00000000001122334455778765532   789999999999    99999 


Q ss_pred             -eeccCCceEE----EEEec---CchhhHHHHHHHHHhc-CCEEEEEEeCCC--cc--hhh--hhh-----hhhhc-CCc
Q psy16304        348 -RVEYGNKYEV----FLYDL---GGSEDFRTIWKQYLGT-VSQTLLVSHSLS--GR--PDD--RCQ-----VYLMS-CNC  406 (537)
Q Consensus       348 -ll~~~e~p~l----llLDT---~Gl~~~~~l~~~~~~~-~~~vIlVvdshd--~~--~~~--~~~-----i~ll~-~G~  406 (537)
                       ++. +  |++    ++||.   ++++.....+..+.+. ..++++|+|+++  ..  ...  +.+     +++++ +|+
T Consensus       251 rL~~-~--p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~  327 (460)
T 2npi_A          251 RLHL-D--PQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG  327 (460)
T ss_dssp             HHHH-C--HHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred             Hhcc-C--cccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence             886 5  899    99994   6663323334444433 345666665555  21  222  233     67788 899


Q ss_pred             EEEEecccch
Q psy16304        407 QVYLISAKNL  416 (537)
Q Consensus       407 ii~~g~nkdl  416 (537)
                      ++ .+.+.++
T Consensus       328 iv-~g~~~~~  336 (460)
T 2npi_A          328 VS-AVDDVYK  336 (460)
T ss_dssp             CC-CCCHHHH
T ss_pred             EE-ECCHHHH
Confidence            87 6665544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.42  E-value=1.2e-12  Score=139.75  Aligned_cols=207  Identities=15%  Similarity=0.191  Sum_probs=119.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh---------hHHHHhhhhc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF---------RTIWKQYLGT  264 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~---------r~~~~~~i~~  264 (537)
                      +|+|||.+|+|||||+|.|+|.+.+...++.|+|++    .+.++| ..+.+|||+|+...         +..+..++..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-eEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            689999999999999999999876666777776653    566665 88999999997631         2223333333


Q ss_pred             cccCCCCCCCccceeeEEee-cCccc-----------------------cc-------CC-ccccc-ccCcC--------
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS-------GI-PDELT-SATHL--------  303 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~-------~l-~~~l~-~~~~l--------  303 (537)
                                 ++++++++| .....                       .+       .. .+... .+...        
T Consensus        82 -----------ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           82 -----------ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHN  150 (439)
T ss_dssp             -----------CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred             -----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCC
Confidence                       788888888 22100                       00       00 00000 00000        


Q ss_pred             --------------Cc---c------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceE
Q psy16304        304 --------------PL---V------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYE  356 (537)
Q Consensus       304 --------------~~---~------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~  356 (537)
                                    ..   .      ......+.++|.+++||+++++.|.|..+..+++..++++.    .+..++ .+
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-~~  229 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RK  229 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EE
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-EE
Confidence                          00   0      00113577999999999999999999987777666555443    233355 68


Q ss_pred             EEEEecCchhhHHHHH------------HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        357 VFLYDLGGSEDFRTIW------------KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       357 lllLDT~Gl~~~~~l~------------~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +.+|||+|+.......            ..+++.++.+++++|.++..+.....  ..+...|+.+....|| |+.
T Consensus       230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~  305 (439)
T 1mky_A          230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV  305 (439)
T ss_dssp             EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence            8999999984332221            24566788999999888765444333  3344578888888888 764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.36  E-value=2.6e-14  Score=164.19  Aligned_cols=99  Identities=10%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLV  385 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlV  385 (537)
                      +..+|+........+.+|||||+||+    ++|++++..+.+|++++||  |+|++  ....++   ..+.+. +.++++
T Consensus       789 L~~vGL~~~~lgq~~~~LSGGErQRV----~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIv  863 (916)
T 3pih_A          789 LHDVGLGYVKLGQPATTLSGGEAQRI----KLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIV  863 (916)
T ss_dssp             HHHTTGGGSBTTCCSTTCCHHHHHHH----HHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHcCCchhhccCCccCCCHHHHHHH----HHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Confidence            34566654333445789999999999    9999998632127899999  99993  223333   444333 457777


Q ss_pred             EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      + +||++....++ +++|      ++|+++..|++.++.
T Consensus       864 I-~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~  901 (916)
T 3pih_A          864 I-EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA  901 (916)
T ss_dssp             E-CCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred             E-eCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence            7 89998877655 7778      899999999999874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.33  E-value=8.6e-15  Score=148.92  Aligned_cols=208  Identities=9%  Similarity=-0.032  Sum_probs=123.1

Q ss_pred             hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304         95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT  174 (537)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~  174 (537)
                      -..|++.++..+..++.+.++..++.++++.+....++..+...     .     ...+.++++.+.|+ .         
T Consensus        54 q~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~-----~-----~~~i~~~~vs~~y~-~---------  113 (305)
T 2v9p_A           54 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKS-----I-----LTFFNYQNIELITF-I---------  113 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHH-----H-----HHHHHHTTCCHHHH-H---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccc-----c-----CCeEEEEEEEEEcC-h---------
Confidence            35899999999999999999999999998865433222222111     0     12356777777664 0         


Q ss_pred             hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                       ..        ...+++.+.+|++++|+||||||||||+++|+|.    +   .|    +|..                 
T Consensus       114 -~v--------L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl----~---~G----~I~~-----------------  156 (305)
T 2v9p_A          114 -NA--------LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF----L---GG----SVLS-----------------  156 (305)
T ss_dssp             -HH--------HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH----H---TC----EEEC-----------------
T ss_pred             -hh--------hccceEEecCCCEEEEECCCCCcHHHHHHHHhhh----c---Cc----eEEE-----------------
Confidence             01        2234577889999999999999999999999998    6   67    4432                 


Q ss_pred             hHHHHhhhhccccCCCCCCC-ccc-eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcC
Q psy16304        255 RTIWKQYLGTVSQTPLGRPD-SRT-CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILG  332 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~-~~~-~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSg  332 (537)
                               +++|.+.++.. ..+ .+.+..+...    .+.+.+..+  ++           -|+.       ...|||
T Consensus       157 ---------~v~q~~~lf~~ti~~~ni~~~~~~~~----~~~~~i~~~--L~-----------~gld-------g~~LSg  203 (305)
T 2v9p_A          157 ---------FANHKSHFWLASLADTRAALVDDATH----ACWRYFDTY--LR-----------NALD-------GYPVSI  203 (305)
T ss_dssp             ---------GGGTTSGGGGGGGTTCSCEEEEEECH----HHHHHHHHT--TT-----------GGGG-------TCCEEC
T ss_pred             ---------EecCccccccccHHHHhhccCccccH----HHHHHHHHH--hH-----------ccCC-------ccCcCH
Confidence                     12232222211 011 2222211110    011111100  00           0111       456999


Q ss_pred             CCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304        333 EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI  411 (537)
Q Consensus       333 G~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g  411 (537)
                      ||+||       |++++. +  |++++  |++++.....  .+..        + +|+......++ + ++++|+++..|
T Consensus       204 GqkQR-------ARAll~-~--p~iLl--Ts~LD~~~~~--~i~~--------l-tH~~~~~~~aD~i-vl~~G~iv~~g  259 (305)
T 2v9p_A          204 DRKHK-------AAVQIK-A--PPLLV--TSNIDVQAED--RYLY--------L-HSRVQTFRFEQPC-TDESGEQPFNI  259 (305)
T ss_dssp             CCSSC-------CCCEEC-C--CCEEE--EESSCSTTCG--GGGG--------G-TTTEEEEECCCCC-CCC---CCCCC
T ss_pred             HHHHH-------HHHHhC-C--CCEEE--ECCCCHHHHH--HHHH--------H-hCCHHHHHhCCEE-EEeCCEEEEeC
Confidence            99998       788885 4  78888  8888432110  0000        1 77776665555 8 99999998888


Q ss_pred             cccch
Q psy16304        412 SAKNL  416 (537)
Q Consensus       412 ~nkdl  416 (537)
                      ++.++
T Consensus       260 ~~~el  264 (305)
T 2v9p_A          260 TDADW  264 (305)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            77666

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.27  E-value=3.7e-13  Score=153.42  Aligned_cols=98  Identities=11%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh--hHHHH---HHHHHhcCCEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE--DFRTI---WKQYLGTVSQTLL  384 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~--~~~~l---~~~~~~~~~~vIl  384 (537)
                      +..+|+........+.+|||||+||+    .+|++++..+ + |++++||  |+|++  ....+   +..+.+. +.+|+
T Consensus       714 L~~~gL~~~~l~~~~~~LSGGekQRv----~LAraL~~~p~~-p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVI  787 (842)
T 2vf7_A          714 LREVGLGYLRLGQPATELSGGEAQRI----KLATELRRSGRG-GTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVI  787 (842)
T ss_dssp             HHHTTCTTSBTTCCGGGCCHHHHHHH----HHHHTTSSCCSS-CEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred             HHHcCCCcccccCCcccCCHHHHHHH----HHHHHHHhCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence            44567665322445899999999999    9999999732 4 7999999  99992  22233   3444333 56777


Q ss_pred             EEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        385 VSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      ++ +||++....++ +++|      ++|+++..+++.++.
T Consensus       788 vi-sHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          788 AV-EHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             EE-CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             EE-cCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            77 89988885544 7888      689999998888764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.24  E-value=1.9e-12  Score=136.59  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             hhhh-cCCCceeeecccccccceeccCCce--EEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304        327 IKRI-LGEPIISLVPTVGFNRARVEYGNKY--EVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       327 i~~L-SgG~rqrvs~ti~la~all~~~e~p--~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~  398 (537)
                      +..+ ||||++|+    .++++++. +  |  ++++||  |+|++....  +++.+.+- .+.++|++ +|++..+..++
T Consensus       292 ~~~~lSgGe~qrl----~lA~~l~~-~--~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i-tH~~~~~~~~d  363 (415)
T 4aby_A          292 LSDVASGGELSRV----MLAVSTVL-G--ADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV-THLAQIAARAH  363 (415)
T ss_dssp             GGGCSCHHHHHHH----HHHHHHHH-C--CSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE-CSCHHHHTTCS
T ss_pred             hhhhcCHhHHHHH----HHHHHHHh-C--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-eCcHHHHhhcC
Confidence            4455 99999999    99998875 4  7  999999  999943332  22322221 24677777 89987766544


Q ss_pred             -hhhh----cCCcEEEEe
Q psy16304        399 -VYLM----SCNCQVYLI  411 (537)
Q Consensus       399 -i~ll----~~G~ii~~g  411 (537)
                       ++++    ++|+++...
T Consensus       364 ~i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          364 HHYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEeccCCceEEEE
Confidence             8888    788877654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.23  E-value=5.5e-13  Score=152.57  Aligned_cols=98  Identities=10%  Similarity=0.105  Sum_probs=70.7

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLL  384 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIl  384 (537)
                      +..+|+........+.+|||||+||+    ++|++++..+ + |++++||  |+|++  ....++   ..+.+ .+.+|+
T Consensus       829 L~~~gL~~~~l~~~~~~LSGGekQRv----~LAraL~~~p~~-p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI  902 (972)
T 2r6f_A          829 LYDVGLGYMKLGQPATTLSGGEAQRV----KLAAELHRRSNG-RTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  902 (972)
T ss_dssp             HHHTTCSSSBTTCCGGGCCHHHHHHH----HHHHHHSSCCCS-CEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHcCCCcccccCchhhCCHHHHHHH----HHHHHHhcCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            44567765223455899999999999    9999999632 3 6999999  99993  333333   34433 345777


Q ss_pred             EEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        385 VSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      ++ +||++....++ +++|      ++|+++..+++.++.
T Consensus       903 vi-sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~  941 (972)
T 2r6f_A          903 VI-EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  941 (972)
T ss_dssp             EE-CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred             EE-cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence            77 89988776544 7888      689999999988774

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.22  E-value=7.2e-13  Score=127.66  Aligned_cols=140  Identities=9%  Similarity=-0.015  Sum_probs=74.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|++++|+||||||||||+++|+|.     .|++|    +|.   ...+. .+.   ...    +..+++++|++.   
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-----~p~~G----~I~---~~~~~-~~~---~~~----~~~ig~v~q~~~---   76 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-----ALQSK----QVS---RIILT-RPA---VEA----GEKLGFLPGTLN---   76 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-----HHHTT----SCS---EEEEE-ECS---CCT----TCCCCSSCC------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-----CCcCC----eee---eEEec-CCc---hhh----hcceEEecCCHH---
Confidence            47999999999999999999999996     57888    442   11121 111   112    256899999752   


Q ss_pred             CccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCC
Q psy16304        274 DSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  353 (537)
Q Consensus       274 ~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e  353 (537)
                         +.+.   .     +  .......+.........              ...+.. ..||+||+    +++++++. + 
T Consensus        77 ---enl~---~-----~--~~~~~~~~~~~~~~~~~--------------~~~l~~-glGq~qrv----~lAraL~~-~-  122 (208)
T 3b85_A           77 ---EKID---P-----Y--LRPLHDALRDMVEPEVI--------------PKLMEA-GIVEVAPL----AYMRGRTL-N-  122 (208)
T ss_dssp             ------C---T-----T--THHHHHHHTTTSCTTHH--------------HHHHHT-TSEEEEEG----GGGTTCCB-C-
T ss_pred             ---HHHH---H-----H--HHHHHHHHHHhccHHHH--------------HHHHHh-CCchHHHH----HHHHHHhc-C-
Confidence               0000   0     0  00000000000000000              111122 23999999    99999997 5 


Q ss_pred             ceEEEEEe--cCchhhHHHHHHHHHhc-CCEEEEEEeCCCcchhh
Q psy16304        354 KYEVFLYD--LGGSEDFRTIWKQYLGT-VSQTLLVSHSLSGRPDD  395 (537)
Q Consensus       354 ~p~lllLD--T~Gl~~~~~l~~~~~~~-~~~vIlVvdshd~~~~~  395 (537)
                       |++++||  |+|  ....+++.+.+. .+.+++ + +||....+
T Consensus       123 -p~lllLDEPts~--~~~~l~~~l~~l~~g~tii-v-tHd~~~~~  162 (208)
T 3b85_A          123 -DAFVILDEAQNT--TPAQMKMFLTRLGFGSKMV-V-TGDITQVD  162 (208)
T ss_dssp             -SEEEEECSGGGC--CHHHHHHHHTTBCTTCEEE-E-EEC-----
T ss_pred             -CCEEEEeCCccc--cHHHHHHHHHHhcCCCEEE-E-ECCHHHHh
Confidence             8999999  777  334444433322 234555 5 77776554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.19  E-value=5.6e-12  Score=118.39  Aligned_cols=75  Identities=7%  Similarity=-0.020  Sum_probs=47.7

Q ss_pred             hhhhhcCCCceeeecccccccc-----eeccCCceEEEEEe----cCchh-hHHHHHHHHHhcCCE-EEEEEe-CCCcch
Q psy16304        326 IIKRILGEPIISLVPTVGFNRA-----RVEYGNKYEVFLYD----LGGSE-DFRTIWKQYLGTVSQ-TLLVSH-SLSGRP  393 (537)
Q Consensus       326 li~~LSgG~rqrvs~ti~la~a-----ll~~~e~p~lllLD----T~Gl~-~~~~l~~~~~~~~~~-vIlVvd-shd~~~  393 (537)
                      .+..|||||+|++    +++++     ++. +  |+++++|    |++++ .....+..+++.... +++++| +|+...
T Consensus        73 ~~~~lSgG~~qr~----~la~aa~~~~l~~-~--p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~  145 (178)
T 1ye8_A           73 YGVNVQYFEELAI----PILERAYREAKKD-R--RKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL  145 (178)
T ss_dssp             EEECHHHHHHHHH----HHHHHHHHHHHHC-T--TCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHH
T ss_pred             cccCcCHHHHHHH----HHHhhcccccccc-C--CCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchH
Confidence            3667999999999    99986     664 4  8999999    46663 233334455555555 555655 577666


Q ss_pred             hhhhhhhhhcCCcEEE
Q psy16304        394 DDRCQVYLMSCNCQVY  409 (537)
Q Consensus       394 ~~~~~i~ll~~G~ii~  409 (537)
                      .+.++  -..+|+++.
T Consensus       146 ~~~i~--~r~~~~i~~  159 (178)
T 1ye8_A          146 VKEIR--RLPGAVLIE  159 (178)
T ss_dssp             HHHHH--TCTTCEEEE
T ss_pred             HHHHH--hcCCcEEEE
Confidence            55433  123456554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.18  E-value=5.5e-12  Score=126.23  Aligned_cols=148  Identities=10%  Similarity=0.016  Sum_probs=75.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR  276 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~  276 (537)
                      ..++|+|+||||||||+|+|+|.    ..|+.|    ++.++| ..+     +.. ..    ...+++++|+..++..  
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~----~~~~~G----~i~~~g-~~i-----~~~-~~----~~~i~~v~q~~~~~~~--   61 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKS----QVSRKA----SSWNRE-EKI-----PKT-VE----IKAIGHVIEEGGVKMK--   61 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH----HC-----------------C-----CCC-CS----CCEEEESCC----CCE--
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC----CCCCCC----ccccCC-ccc-----Ccc-ee----eeeeEEEeecCCCcCC--
Confidence            36899999999999999999999    899999    777765 222     111 11    2568899998764432  


Q ss_pred             ceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceE
Q psy16304        277 TCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE  356 (537)
Q Consensus       277 ~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~  356 (537)
                         +.+.|.-.           ....... ......+..+.... -...+..+||||++||+    +++++++      .
T Consensus        62 ---ltv~d~~~-----------~g~~~~~-~~~~~~i~~~~~~~-~~~~~~~~LS~G~~qrv----~iaRal~------~  115 (270)
T 3sop_A           62 ---LTVIDTPG-----------FGDQINN-ENCWEPIEKYINEQ-YEKFLKEEVNIARKKRI----PDTRVHC------C  115 (270)
T ss_dssp             ---EEEECCCC-------------CCSBC-TTCSHHHHHHHHHH-HHHHHHHHSCTTCCSSC----CCCSCCE------E
T ss_pred             ---ceEEechh-----------hhhhccc-HHHHHHHHHHHHHH-HHhhhHHhcCcccchhh----hhheeee------e
Confidence               22333100           0000000 00000111111111 13455789999999999    8888755      4


Q ss_pred             EEEEe--cCchhhHH-HHHHHHHhcCCEEEEEEeCCCcc
Q psy16304        357 VFLYD--LGGSEDFR-TIWKQYLGTVSQTLLVSHSLSGR  392 (537)
Q Consensus       357 lllLD--T~Gl~~~~-~l~~~~~~~~~~vIlVvdshd~~  392 (537)
                      ++++|  +.|+.... .+++.+.+. ..+++|++-.|..
T Consensus       116 lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A          116 LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM  153 (270)
T ss_dssp             EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred             eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence            88889  56774333 334555444 5666666444443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.18  E-value=9.9e-12  Score=126.38  Aligned_cols=152  Identities=13%  Similarity=0.177  Sum_probs=92.1

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHHH--Hhhhh
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTIW--KQYLG  263 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~~--~~~i~  263 (537)
                      +++.+.+|++++|+|+||||||||+++|+|.    +.|+.|    +|.+.+      .|+....   ..+ .|  +..++
T Consensus        93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~----l~~~~g----~V~l~g------~d~~r~~a~~ql~-~~~~~~~i~  157 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR----LKNEGT----KVLMAA------GDTFRAAASDQLE-IWAERTGCE  157 (302)
T ss_dssp             CCCCSSSCEEEEEECCTTSCHHHHHHHHHHH----HHHTTC----CEEEEC------CCCSCHHHHHHHH-HHHHHHTCE
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHHH----HHHcCC----eEEEEe------ecccchhHHHHHH-HHHHhcCce
Confidence            4566778999999999999999999999999    889989    666544      3332111   111 12  24578


Q ss_pred             ccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        264 TVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       264 ~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      +++|++. +++..+.                .+.+.... ..  ......+..+|+.+.. ..++.+||   +|++    
T Consensus       158 ~v~q~~~~~~~~~~v----------------~e~l~~~~-~~--~~d~~lldt~gl~~~~-~~~~~eLS---kqr~----  210 (302)
T 3b9q_A          158 IVVAEGDKAKAATVL----------------SKAVKRGK-EE--GYDVVLCDTSGRLHTN-YSLMEELI---ACKK----  210 (302)
T ss_dssp             EECCC--CCCHHHHH----------------HHHHHHHH-HT--TCSEEEECCCCCSSCC-HHHHHHHH---HHHH----
T ss_pred             EEEecCCccCHHHHH----------------HHHHHHHH-Hc--CCcchHHhcCCCCcch-hHHHHHHH---HHHH----
Confidence            8888754 3321111                11111000 00  0011223356765543 56688999   7888    


Q ss_pred             ccccceeccCCceE--EEEEe-cCchhhHHHHHHHHHhcCC-EEEEEE
Q psy16304        343 GFNRARVEYGNKYE--VFLYD-LGGSEDFRTIWKQYLGTVS-QTLLVS  386 (537)
Q Consensus       343 ~la~all~~~e~p~--lllLD-T~Gl~~~~~l~~~~~~~~~-~vIlVv  386 (537)
                      +++++++. +  |+  ++++| |+|++..... +.+.+..+ +.++++
T Consensus       211 ~iaral~~-~--P~e~lLvLDptsglD~~~~~-~~~~~~~g~t~iiiT  254 (302)
T 3b9q_A          211 AVGKIVSG-A--PNEILLVLDGNTGLNMLPQA-REFNEVVGITGLILT  254 (302)
T ss_dssp             HHHTTSTT-C--CSEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEE
T ss_pred             HHHHhhcc-C--CCeeEEEEeCCCCcCHHHHH-HHHHHhcCCCEEEEe
Confidence            88999886 4  67  99999 8888766543 45544434 444444

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.15  E-value=8.9e-11  Score=109.22  Aligned_cols=89  Identities=31%  Similarity=0.645  Sum_probs=75.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|||||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|++.++..+..++..          
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~----------   83 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFEN----------   83 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTT----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC----------
Confidence            567899999999999999999999877778899999888898885 999999999999888877777766          


Q ss_pred             ccceeeEEee-cCcccccCCcc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~  295 (537)
                       ++++++++| ++...+..+..
T Consensus        84 -~~~~i~v~d~~~~~s~~~~~~  104 (181)
T 1fzq_A           84 -TDILIYVIDSADRKRFEETGQ  104 (181)
T ss_dssp             -CSEEEEEEETTCGGGHHHHHH
T ss_pred             -CCEEEEEEECcCHHHHHHHHH
Confidence             899999999 66555544433

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.12  E-value=3.7e-11  Score=124.86  Aligned_cols=153  Identities=13%  Similarity=0.160  Sum_probs=94.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHHH--Hhhh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTIW--KQYL  262 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~~--~~~i  262 (537)
                      .+++.+.+|++++|+|+||||||||++.|+|.    +.|+.|    +|.+.+      .|+....   ... .|  +..+
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~----l~~~~G----~V~l~g------~D~~r~~a~eql~-~~~~r~~i  213 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR----LKNEGT----KVLMAA------GDTFRAAASDQLE-IWAERTGC  213 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH----HHHTTC----CEEEEC------CCCSCHHHHHHHH-HHHHHHTC
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhh----ccccCC----EEEEec------ccccccchhHHHH-HHHHhcCe
Confidence            35566789999999999999999999999999    889888    665544      3332111   111 12  2457


Q ss_pred             hccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        263 GTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       263 ~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      ++++|+.. ..+..+.                .+.+.... ..  ......+..+|+.+. ...++.+||   +|++   
T Consensus       214 ~~v~q~~~~~~p~~tv----------------~e~l~~~~-~~--~~d~~lldt~Gl~~~-~~~~~~eLS---kqr~---  267 (359)
T 2og2_A          214 EIVVAEGDKAKAATVL----------------SKAVKRGK-EE--GYDVVLCDTSGRLHT-NYSLMEELI---ACKK---  267 (359)
T ss_dssp             EEECCSSSSCCHHHHH----------------HHHHHHHH-HT--TCSEEEEECCCCSSC-CHHHHHHHH---HHHH---
T ss_pred             EEEEecccccChhhhH----------------HHHHHHHH-hC--CCHHHHHHhcCCChh-hhhHHHHHH---HHHH---
Confidence            88888754 3321111                11111000 00  001123446777654 356689999   7888   


Q ss_pred             cccccceeccCCceE--EEEEe-cCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        342 VGFNRARVEYGNKYE--VFLYD-LGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       342 i~la~all~~~e~p~--lllLD-T~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                       .+++++.. +  |+  ++++| |+|++..... +.+.+..+.+++++
T Consensus       268 -~iaral~~-~--P~e~lLvLDpttglD~~~~~-~~~~~~~g~t~iii  310 (359)
T 2og2_A          268 -AVGKIVSG-A--PNEILLVLDGNTGLNMLPQA-REFNEVVGITGLIL  310 (359)
T ss_dssp             -HHHHHSTT-C--CSEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEE
T ss_pred             -HHHHHHhc-C--CCceEEEEcCCCCCCHHHHH-HHHHHhcCCeEEEE
Confidence             88999886 4  67  99999 8888766543 44544434444444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.09  E-value=6.8e-11  Score=111.19  Aligned_cols=149  Identities=15%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|+||||||||+++|+|..+ ..+.||.|  +....+.++| .+.+.+||++|+++++..+..++..        
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~--------  101 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG--------  101 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT--------
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc--------
Confidence            5799999999999999999999865 34556666  3344778876 3456679999987665444443332        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceecc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY  351 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~  351 (537)
                         ++.+++++| ++...++++..++..+..   .......+..++    .|..+    ........    ..+++++. 
T Consensus       102 ---~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~i~~v~----nK~Dl----~~~~~~~~----~~a~~l~~-  162 (191)
T 1oix_A          102 ---AVGALLVYDIAKHLTYENVERWLKELRD---HADSNIVIMLVG----NKSDL----RHLRAVPT----DEARAFAE-  162 (191)
T ss_dssp             ---CCEEEEEEETTCHHHHHTHHHHHHHHHH---HSCTTCEEEEEE----ECGGG----GGGCCSCH----HHHHHHHH-
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHHHHHHH---hcCCCCcEEEEE----ECccc----ccccccCH----HHHHHHHH-
Confidence               567788999 554444443333222111   111223344332    12221    11111122    44566664 


Q ss_pred             CCceEEEEEecCch--hhHHHHHHH
Q psy16304        352 GNKYEVFLYDLGGS--EDFRTIWKQ  374 (537)
Q Consensus       352 ~e~p~lllLDT~Gl--~~~~~l~~~  374 (537)
                      .  +.+.++||+++  .....+++.
T Consensus       163 ~--~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          163 K--NGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             H--TTCEEEECCTTTCTTHHHHHHH
T ss_pred             H--cCCEEEEEeCCCCCCHHHHHHH
Confidence            3  56889998888  334444433

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.08  E-value=1.6e-12  Score=120.90  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++|.+.+|+.++|+|+||||||||++++.+.
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSCG
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHccC
Confidence            3566779999999999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.08  E-value=1.2e-10  Score=110.05  Aligned_cols=91  Identities=26%  Similarity=0.475  Sum_probs=66.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|++.++..+..++..          
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~----------   92 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPA----------   92 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGG----------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC-EEEEEEECCCcHhhHHHHHHHHhc----------
Confidence            345799999999999999999999877767888888888899987 999999999998887776666655          


Q ss_pred             ccceeeEEee-cCcccccCCcccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                       ++++++++| ++..++.++..++
T Consensus        93 -~d~~i~v~D~~~~~s~~~~~~~~  115 (198)
T 1f6b_A           93 -INGIVFLVDCADHERLLESKEEL  115 (198)
T ss_dssp             -CSEEEEEEETTCGGGHHHHHHHH
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHH
Confidence             899999999 6665555444433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.04  E-value=1.3e-10  Score=109.68  Aligned_cols=87  Identities=16%  Similarity=0.335  Sum_probs=60.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|+||||||||+++|+|..+ ..+.|+.|  +....+.++| .+.+.+||++|++.++..+..++..        
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~--------   77 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG--------   77 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT--------
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc--------
Confidence            5799999999999999999999865 33456655  3334788886 3577889999988766443333332        


Q ss_pred             CCccceeeEEee-cCcccccCCc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                         ++++++++| ++...+.++.
T Consensus        78 ---~~~~i~v~d~~~~~s~~~~~   97 (199)
T 2f9l_A           78 ---AVGALLVYDIAKHLTYENVE   97 (199)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHH
Confidence               677889999 5544444433

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.02  E-value=3.8e-10  Score=105.88  Aligned_cols=90  Identities=28%  Similarity=0.489  Sum_probs=71.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|++.++..+..++..          
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~----------   90 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPE----------   90 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT-EEEEEEECCCSGGGTTSGGGGCTT----------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC-EEEEEEECCCCHHHHHHHHHHHhc----------
Confidence            346899999999999999999999877777888888888888887 999999999998877655554443          


Q ss_pred             ccceeeEEee-cCcccccCCccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                       ++++++++| ++...+..+..+
T Consensus        91 -~d~~i~v~d~~~~~s~~~~~~~  112 (190)
T 1m2o_B           91 -VNGIVFLVDAADPERFDEARVE  112 (190)
T ss_dssp             -CCEEEEEEETTCGGGHHHHHHH
T ss_pred             -CCEEEEEEECCChHHHHHHHHH
Confidence             899999999 666555444433

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.99  E-value=9.9e-11  Score=110.98  Aligned_cols=29  Identities=21%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      |++++|+|+||||||||+++|+|.    +. +.|
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~----~~-~~G   29 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEV----LK-SSG   29 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHH----HH-HTT
T ss_pred             CCEEEEECCCCChHHHHHHHHHhh----cc-cCC
Confidence            688999999999999999999998    76 777

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.99  E-value=2.9e-10  Score=109.94  Aligned_cols=109  Identities=20%  Similarity=0.358  Sum_probs=76.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+|+|||.+|+|||||++.+....| ..+.||.|..  ...+.+++ .+.+.+||++|+++++.++..++..      
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~------   85 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRD------   85 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTT------
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcc------
Confidence            457899999999999999999998777 5678999843  44555554 5789999999999999888888877      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           ++++++++| ++...++++..++..+..   ......++.++|
T Consensus        86 -----a~~~ilv~di~~~~Sf~~i~~~~~~i~~---~~~~~~piilVg  125 (216)
T 4dkx_A           86 -----SAAAVVVYDITNVNSFQQTTKWIDDVRT---ERGSDVIIMLVG  125 (216)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHHHHHHHHHH---HHTTSSEEEEEE
T ss_pred             -----ccEEEEEeecchhHHHHHHHHHHHHHHH---hcCCCCeEEEEe
Confidence                 999999999 888877777766544322   122345666775

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.99  E-value=6.9e-10  Score=100.85  Aligned_cols=88  Identities=33%  Similarity=0.690  Sum_probs=72.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|+|||||++.+.+..+....||.|++...+.+++ ..+.+||++|++.++..+..++..          
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~----------   74 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSN----------   74 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTT----------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECC-EEEEEEECCCChhhhHHHHHHhcc----------
Confidence            457899999999999999999998777667899998888888885 999999999998887666665554          


Q ss_pred             ccceeeEEee-cCcccccCCc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~  294 (537)
                       ++++++++| ++...+..+.
T Consensus        75 -~d~ii~v~d~~~~~s~~~~~   94 (171)
T 1upt_A           75 -TDAVIYVVDSCDRDRIGISK   94 (171)
T ss_dssp             -CSEEEEEEETTCCTTHHHHH
T ss_pred             -CCEEEEEEECCCHHHHHHHH
Confidence             899999999 5554444333

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.98  E-value=6.4e-10  Score=104.44  Aligned_cols=93  Identities=31%  Similarity=0.649  Sum_probs=71.2

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+..+|+++|++|||||||++.+.+..+....||.|+....+.+.+ ..+.+||++|+++++..+..++..       
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-------   96 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLWRHYFQN-------   96 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CTTHHHHHHT-------
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc-------
Confidence            345678999999999999999999998877667789898777888875 999999999998887777777766       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        97 ----~d~iilv~D~~~~~s~~~~~~~  118 (192)
T 2b6h_A           97 ----TQGLIFVVDSNDRERVQESADE  118 (192)
T ss_dssp             ----CCEEEEEEETTCGGGHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHH
Confidence                899999999 665554444433

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.97  E-value=5.6e-10  Score=103.82  Aligned_cols=91  Identities=24%  Similarity=0.522  Sum_probs=71.4

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+|+++|+.|||||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|+++++..+..++..         
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~---------   83 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTN---------   83 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTT---------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC---------
Confidence            3568899999999999999999998777667899998888888886 999999999998887777776655         


Q ss_pred             CccceeeEEee-cCcccccCCccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                        ++++++++| ++.+.+..+..+
T Consensus        84 --~d~ii~v~d~~~~~s~~~~~~~  105 (187)
T 1zj6_A           84 --TEFVIVVVDSTDRERISVTREE  105 (187)
T ss_dssp             --CCEEEEEEETTCTTTHHHHHHH
T ss_pred             --CCEEEEEEeCCCHHHHHHHHHH
Confidence              899999999 555544444433

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.97  E-value=5.4e-10  Score=100.97  Aligned_cols=86  Identities=30%  Similarity=0.662  Sum_probs=70.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++++|++|+|||||++.+.+..+....||.|+....+.+.+ ..+.+||++|++.++..+..++..           ++
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-----------~d   69 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN-----------TQ   69 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSS-CEEEEEECCCCGGGHHHHHHHTTT-----------CS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECC-EEEEEEEcCCChhhHHHHHHHhcc-----------CC
Confidence            689999999999999999998777667889997777777765 999999999999888777776655           89


Q ss_pred             eeeEEee-cCcccccCCcc
Q psy16304        278 CQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~  295 (537)
                      ++++++| ++...+..+..
T Consensus        70 ~~i~v~d~~~~~s~~~~~~   88 (164)
T 1r8s_A           70 GLIFVVDSNDRERVNEARE   88 (164)
T ss_dssp             EEEEEEETTCGGGHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHH
Confidence            9999999 66555444433

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.96  E-value=9.5e-10  Score=101.90  Aligned_cols=89  Identities=29%  Similarity=0.675  Sum_probs=72.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++++|++|||||||++.+.+.....+.||.|++...+.+++ ..+.+||++|+++++..+..++..          
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~----------   85 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFES----------   85 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTT----------
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC----------
Confidence            567899999999999999999998776667899998888888875 999999999998877666555444          


Q ss_pred             ccceeeEEee-cCcccccCCcc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~  295 (537)
                       ++++++++| ++...+..+..
T Consensus        86 -~d~ii~v~d~~~~~s~~~~~~  106 (186)
T 1ksh_A           86 -TDGLIWVVDSADRQRMQDCQR  106 (186)
T ss_dssp             -CSEEEEEEETTCGGGHHHHHH
T ss_pred             -CCEEEEEEECcCHHHHHHHHH
Confidence             899999999 66555544433

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.95  E-value=6.8e-10  Score=102.84  Aligned_cols=89  Identities=24%  Similarity=0.521  Sum_probs=73.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+|+++|+.|+|||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|+++++..+..++..          
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~----------   88 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTN----------   88 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETT-EEEEEEEESSSGGGTCGGGGGGTT----------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc----------
Confidence            567899999999999999999999888778899998888888876 999999999998887666665554          


Q ss_pred             ccceeeEEee-cCcccccCCcc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~  295 (537)
                       ++++++++| ++...+..+..
T Consensus        89 -~d~ii~v~D~~~~~s~~~~~~  109 (181)
T 2h17_A           89 -TEFVIVVVDSTDRERISVTRE  109 (181)
T ss_dssp             -CCEEEEEEETTCTTTHHHHHH
T ss_pred             -CCEEEEEEECCCHHHHHHHHH
Confidence             899999999 55544444333

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.94  E-value=4.7e-10  Score=103.45  Aligned_cols=90  Identities=29%  Similarity=0.613  Sum_probs=68.7

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+++++|++|||||||++.+.+..+..+.||.|+....+.+++ ..+.+||++|+..++..+..++..         
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~---------   85 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYAD---------   85 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTT---------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc---------
Confidence            3578899999999999999999998767667899998888888876 999999999998776555554444         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++...+..+..
T Consensus        86 --~d~ii~v~d~~~~~s~~~~~~  106 (183)
T 1moz_A           86 --TAAVIFVVDSTDKDRMSTASK  106 (183)
T ss_dssp             --EEEEEEEEETTCTTTHHHHHH
T ss_pred             --CCEEEEEEECCCHHHHHHHHH
Confidence              899999999 55554444433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.94  E-value=1.4e-09  Score=101.62  Aligned_cols=90  Identities=24%  Similarity=0.557  Sum_probs=71.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ...+|+|+|+.|||||||++.|++..+.  .+.||.|++...+...+ ..+.+||++|++.++..+..++..        
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~--------   86 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGR-VAFTVFDMGGAKKFRGLWETYYDN--------   86 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTT--------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHhc--------
Confidence            4578999999999999999999998874  45899998888887665 999999999999888776665554        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++...+..+..+
T Consensus        87 ---~d~ii~v~D~~~~~s~~~~~~~  108 (199)
T 4bas_A           87 ---IDAVIFVVDSSDHLRLCVVKSE  108 (199)
T ss_dssp             ---CSEEEEEEETTCGGGHHHHHHH
T ss_pred             ---CCEEEEEEECCcHHHHHHHHHH
Confidence               899999999 655555444433

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.93  E-value=8.9e-11  Score=125.26  Aligned_cols=171  Identities=11%  Similarity=-0.038  Sum_probs=95.9

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh------hHHHHhhhhc
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLGT  264 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~------r~~~~~~i~~  264 (537)
                      +.+.+|++++|+|+||||||||+++|+|.    ..|+.|    .+.+.| .+-  .+.   ..+      ...+++.+++
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~----~~~~~G----~i~~~G-~r~--~ev---~~~~~~~~~~~~l~r~i~~  217 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY----TRADVI----VVGLIG-ERG--REV---KDFIENILGPDGRARSVVI  217 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHH----SCCSEE----EEEEES-CCH--HHH---HHHHHTTTHHHHHHTEEEE
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcc----cCCCeE----EEEEec-eec--HHH---HHHHHhhccccccCceEEE
Confidence            66789999999999999999999999999    899999    777665 100  000   010      1123455677


Q ss_pred             cccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304        265 VSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  343 (537)
Q Consensus       265 v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~  343 (537)
                      ++|... .+...+.                .+......++... .....+..+.       . +..||+|+ |++    +
T Consensus       218 v~q~~~~~~~~~~v----------------~~~~~~~ae~~~~-~~~~v~~~ld-------~-l~~lS~g~-qrv----s  267 (438)
T 2dpy_A          218 AAPADVSPLLRMQG----------------AAYATRIAEDFRD-RGQHVLLIMD-------S-LTRYAMAQ-REI----A  267 (438)
T ss_dssp             EECTTSCHHHHHHH----------------HHHHHHHHHHHHT-TTCEEEEEEE-------C-HHHHHHHH-HHH----H
T ss_pred             EECCCCCHHHHHHH----------------HHHHHHHHHHHHh-CCCCHHHHHH-------h-HHHHHHHH-HHH----H
Confidence            777422 1111000                0000000000000 0111222331       1 67899999 888    6


Q ss_pred             cccceeccCCceEEEEEecCch--hhHHHHHHHHHhcCC-----E------EEEEEeCCCcchhhhhhhhhhcCCcEEEE
Q psy16304        344 FNRARVEYGNKYEVFLYDLGGS--EDFRTIWKQYLGTVS-----Q------TLLVSHSLSGRPDDRCQVYLMSCNCQVYL  410 (537)
Q Consensus       344 la~all~~~e~p~lllLDT~Gl--~~~~~l~~~~~~~~~-----~------vIlVvdshd~~~~~~~~i~ll~~G~ii~~  410 (537)
                      ++   +  .+ |++    |+|+  .....+++.+.+...     +      +++++ +||........++.+.+|+++..
T Consensus       268 lA---l--~~-p~~----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~-tHdl~~~iad~v~~l~dG~Ivl~  336 (438)
T 2dpy_A          268 LA---I--GE-PPA----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE-GDDQQDPIADSARAILDGHIVLS  336 (438)
T ss_dssp             HH---T--TC-CCC----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS-SSCSCCHHHHHHHHHSSEEEEEC
T ss_pred             HH---h--CC-Ccc----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe-CCCccchhhceEEEEeCcEEEEe
Confidence            66   3  33 666    7777  233333333332211     3      45555 89988322333889999999887


Q ss_pred             ecccch
Q psy16304        411 ISAKNL  416 (537)
Q Consensus       411 g~nkdl  416 (537)
                      +...++
T Consensus       337 ~~~~~~  342 (438)
T 2dpy_A          337 RRLAEA  342 (438)
T ss_dssp             HHHHHT
T ss_pred             CCHHHc
Confidence            766554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.92  E-value=4.9e-10  Score=113.93  Aligned_cols=175  Identities=11%  Similarity=0.127  Sum_probs=93.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC---chhhHHH--HhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS---EDFRTIW--KQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~---~~~r~~~--~~~i~~v~Q~~  269 (537)
                      +|++++|+||||||||||+++|+|.    +.|+.|    ++.+.+      .|+...   +... .|  +..+++++|..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl----l~~~~g----~V~l~g------~D~~r~~a~~ql~-~~~~~~~i~~v~q~~  165 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY----YQNLGK----KVMFCA------GDTFRAAGGTQLS-EWGKRLSIPVIQGPE  165 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH----HHTTTC----CEEEEC------CCCSSTTTTHHHH-HHHHHHTCCEECCCT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH----HHhcCC----EEEEEe------ecCCChhHHHHHH-HHHHhcCceEEEeCC
Confidence            6899999999999999999999999    999999    666554      333221   1221 22  24578888886


Q ss_pred             CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304        270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV  349 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all  349 (537)
                      .+.+....                .+.+.... .  .......+...|..+. +..++.+||   ++++    ++++++.
T Consensus       166 ~~~p~~~v----------------~~~v~~~~-~--~~~d~~llDt~G~~~~-~~~~~~eLs---~~r~----~iaRal~  218 (304)
T 1rj9_A          166 GTDSAALA----------------YDAVQAMK-A--RGYDLLFVDTAGRLHT-KHNLMEELK---KVKR----AIAKADP  218 (304)
T ss_dssp             TCCHHHHH----------------HHHHHHHH-H--HTCSEEEECCCCCCTT-CHHHHHHHH---HHHH----HHHHHCT
T ss_pred             CCCHHHHH----------------HHHHHHHH-h--CCCCEEEecCCCCCCc-hHHHHHHHH---HHHH----HHHHhhc
Confidence            63321111                01010000 0  0000011123444332 344566777   6777    7899888


Q ss_pred             ccCCceEEEEEe-cCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        350 EYGNKYEVFLYD-LGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       350 ~~~e~p~lllLD-T~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ..+. .-++.|| +.+.+. ......+.+..+.+++++ +|+......-.  .+..+-|.++.+.+..
T Consensus       219 ~~P~-~~lLvLDa~t~~~~-~~~~~~~~~~~~~t~iiv-Th~d~~a~gg~~l~i~~~~~~pi~~ig~G  283 (304)
T 1rj9_A          219 EEPK-EVWLVLDAVTGQNG-LEQAKKFHEAVGLTGVIV-TKLDGTAKGGVLIPIVRTLKVPIKFVGVG  283 (304)
T ss_dssp             TCCS-EEEEEEETTBCTHH-HHHHHHHHHHHCCSEEEE-ECTTSSCCCTTHHHHHHHHCCCEEEEECS
T ss_pred             CCCC-eEEEEEcHHHHHHH-HHHHHHHHHHcCCcEEEE-ECCcccccccHHHHHHHHHCCCeEEEeCC
Confidence            6332 2377889 555543 334455544433444444 45433332212  2223346666665544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.92  E-value=9.4e-10  Score=102.56  Aligned_cols=89  Identities=24%  Similarity=0.561  Sum_probs=71.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC-C-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP-I-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +..+|+|+|+.|+|||||++.|.+.. + ..+.||.|+....+.+++ ..+.+||++|++.++..+..++..        
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~--------   90 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNLWEHYYKE--------   90 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS-CEEEEEEECCSTTTGGGGGGGGGG--------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHHhc--------
Confidence            46789999999999999999999986 3 456789998888888886 999999999998888777666655        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        91 ---~d~ii~v~d~~~~~s~~~~~~  111 (190)
T 2h57_A           91 ---GQAIIFVIDSSDRLRMVVAKE  111 (190)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHHHH
Confidence               899999999 55544444333

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.92  E-value=3.1e-11  Score=127.66  Aligned_cols=147  Identities=14%  Similarity=0.020  Sum_probs=83.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      .+||+|+||||||||+|+|+|.    ..|+.|    .+.+++ ..+.          +      .++++|.+. ++.   
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl----~~p~~G----sI~~~g-~~~t----------~------~~~v~q~~~-~~~---  121 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGI----GNEEEG----AAKTGV-VEVT----------M------ERHPYKHPN-IPN---  121 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC----CTTSTT----SCCCCC---------------C------CCEEEECSS-CTT---
T ss_pred             EEEEECCCCCcHHHHHHHHhCC----CCccCc----eEEECC-eecc----------e------eEEeccccc-cCC---
Confidence            9999999999999999999999    899999    776665 2210          1      155666632 111   


Q ss_pred             eeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCC--CceeeecccccccceeccC--
Q psy16304        278 CQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYG--  352 (537)
Q Consensus       278 ~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG--~rqrvs~ti~la~all~~~--  352 (537)
                        +.+.| ..... .              .......+..+|+.+.. .. +. +|+|  ++|++    .+++++...+  
T Consensus       122 --ltv~D~~g~~~-~--------------~~~~~~~L~~~~L~~~~-~~-~~-lS~G~~~kqrv----~la~aL~~~~~p  177 (413)
T 1tq4_A          122 --VVFWDLPGIGS-T--------------NFPPDTYLEKMKFYEYD-FF-II-ISATRFKKNDI----DIAKAISMMKKE  177 (413)
T ss_dssp             --EEEEECCCGGG-S--------------SCCHHHHHHHTTGGGCS-EE-EE-EESSCCCHHHH----HHHHHHHHTTCE
T ss_pred             --eeehHhhcccc-h--------------HHHHHHHHHHcCCCccC-Ce-EE-eCCCCccHHHH----HHHHHHHhcCCC
Confidence              12233 11000 0              00111122233444332 12 23 9999  89999    7777776521  


Q ss_pred             ------CceEEEEEe--cCch-----hhHHHHHHHHH-----hcC--CEEEEEEeCCCcch--hhhhh
Q psy16304        353 ------NKYEVFLYD--LGGS-----EDFRTIWKQYL-----GTV--SQTLLVSHSLSGRP--DDRCQ  398 (537)
Q Consensus       353 ------e~p~lllLD--T~Gl-----~~~~~l~~~~~-----~~~--~~vIlVvdshd~~~--~~~~~  398 (537)
                            + |+++++|  |+|+     +.....++.+.     +.+  ...++++++|+...  ++.++
T Consensus       178 ~~lV~tk-pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~  244 (413)
T 1tq4_A          178 FYFVRTK-VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM  244 (413)
T ss_dssp             EEEEECC-HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred             eEEEEec-CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence                  3 6788888  8887     33333444443     221  23455555888765  55554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.91  E-value=5.6e-12  Score=120.63  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+.+|++++|+||||||||||+++|+|.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            35679999999999999999999999998

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.91  E-value=6.2e-10  Score=116.04  Aligned_cols=81  Identities=9%  Similarity=0.076  Sum_probs=54.4

Q ss_pred             ccchhhhhcCCCceeeecccccccceec----cCCceEEEEEe--cCchhhHH--HHHHHHH--hcCCEEEEEEeCCCcc
Q psy16304        323 KSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYD--LGGSEDFR--TIWKQYL--GTVSQTLLVSHSLSGR  392 (537)
Q Consensus       323 Ks~li~~LSgG~rqrvs~ti~la~all~----~~e~p~lllLD--T~Gl~~~~--~l~~~~~--~~~~~vIlVvdshd~~  392 (537)
                      ....+.+|||||+||+    +++++++.    ..+ |++++||  |+|++...  .+++.+.  ...+.+++++ +|++.
T Consensus       273 ~~~~~~~LSgGe~qr~----~la~al~~~~~~~~~-p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i-tH~~~  346 (365)
T 3qf7_A          273 IERPARGLSGGERALI----SISLAMSLAEVASGR-LDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI-THDRE  346 (365)
T ss_dssp             EEEEGGGSCHHHHHHH----HHHHHHHHHHHTTTT-CCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE-ESCHH
T ss_pred             cCCCchhCCHHHHHHH----HHHHHHHhhhcccCC-CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE-ecchH
Confidence            3456889999999999    87777762    123 8999999  99994332  2223222  1234566666 78887


Q ss_pred             hhhhhh-hhhhcCCcEEE
Q psy16304        393 PDDRCQ-VYLMSCNCQVY  409 (537)
Q Consensus       393 ~~~~~~-i~ll~~G~ii~  409 (537)
                      ....++ ++++++|+++.
T Consensus       347 ~~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          347 FSEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             HHTTCSCEEEEETTEEC-
T ss_pred             HHHhCCEEEEEECCEEEe
Confidence            755555 88889998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.91  E-value=6.4e-10  Score=103.51  Aligned_cols=89  Identities=33%  Similarity=0.605  Sum_probs=70.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      ++..+++++|++|+|||||++.+.+..+....||.|++...+.+++ ..+.+||++|+++++..+..++.          
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~----------   88 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWRCYFS----------   88 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETT-EEEEEEEECCSSSSCCCCSSSST----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECC-EEEEEEECCCCHhHHHHHHHHhh----------
Confidence            3568899999999999999999998877667889998888888875 99999999999876644333333          


Q ss_pred             CccceeeEEee-cCcccccCCc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~  294 (537)
                       .++++++++| ++.+.+..+.
T Consensus        89 -~~d~ii~v~d~~~~~s~~~~~  109 (189)
T 2x77_A           89 -DTDAVIYVVDSTDRDRMGVAK  109 (189)
T ss_dssp             -TCCEEEEEEETTCCTTHHHHH
T ss_pred             -cCCEEEEEEeCCCHHHHHHHH
Confidence             3899999999 5555444333

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.90  E-value=9.5e-11  Score=119.67  Aligned_cols=33  Identities=21%  Similarity=0.024  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..+|+++||+|+||||||||+++|+|.    +.|+.|
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl----l~~~~G  119 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL----LARWDH  119 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH----HHTSTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh----ccccCC
Confidence            568999999999999999999999998    888766

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.90  E-value=2.8e-11  Score=117.06  Aligned_cols=68  Identities=16%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ..++|.+.+|++++|+||||||||||+++|+|.    + |  |    .+.+ + ..+.-  .......    ...++++|
T Consensus        14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~----~-p--G----~i~~-g-~~~~~--~~~~~~~----~~~i~~~~   74 (218)
T 1z6g_A           14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE----F-P--N----YFYF-S-VSCTT--RKKREKE----KEGVDYYF   74 (218)
T ss_dssp             --------CCCCEEEECSTTSSHHHHHHHHHHH----S-T--T----TEEE-C-CCEEC--SCCCSSC----CBTTTBEE
T ss_pred             cCCceecCCCCEEEEECCCCCCHHHHHHHHHhh----C-C--C----cEEE-e-ecccC--CCCCccc----ccCCeEEE
Confidence            345677889999999999999999999999998    6 5  8    6665 3 22211  1100111    14578888


Q ss_pred             cCCCCCC
Q psy16304        267 QTPLGRP  273 (537)
Q Consensus       267 Q~~~l~~  273 (537)
                      |++.++.
T Consensus        75 ~~~~~~~   81 (218)
T 1z6g_A           75 IDKTIFE   81 (218)
T ss_dssp             CCHHHHH
T ss_pred             CCHHHHH
Confidence            8765443

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.88  E-value=2.8e-09  Score=99.36  Aligned_cols=89  Identities=26%  Similarity=0.613  Sum_probs=72.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +..+|+|+|+.|+|||||++.|.+..+ ..+.||.|++...+...+ ..+.+||++|+++++..+..++..         
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~---------   90 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRG---------   90 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTT---------
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHcc---------
Confidence            457899999999999999999998776 457789998777777665 999999999999888777776665         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++...+..+..
T Consensus        91 --~d~ii~v~D~~~~~s~~~~~~  111 (188)
T 1zd9_A           91 --VSAIVYMVDAADQEKIEASKN  111 (188)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHH
T ss_pred             --CCEEEEEEECCCHHHHHHHHH
Confidence              899999999 55555444433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.87  E-value=6.5e-10  Score=114.35  Aligned_cols=45  Identities=16%  Similarity=0.116  Sum_probs=39.1

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ..+++.+.+|+.++|+|+||||||||+++|+|.    +.|+.|    .+.++|
T Consensus       162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~----~~~~~g----~i~i~~  206 (330)
T 2pt7_A          162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF----IPKEER----IISIED  206 (330)
T ss_dssp             HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG----SCTTSC----EEEEES
T ss_pred             hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCc----EEEECC
Confidence            345666778999999999999999999999999    999999    777655

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.87  E-value=9.4e-10  Score=100.77  Aligned_cols=92  Identities=20%  Similarity=0.296  Sum_probs=71.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      +..+++++|++|||||||++.+.+..+ ..+.||.|  +....+.+++  ...+.+||++|++.++..+..++..     
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-----   79 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG-----   79 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT-----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh-----
Confidence            346799999999999999999998766 34567777  5556777775  3889999999998887777777665     


Q ss_pred             CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                            ++++++++| ++...++.+..++
T Consensus        80 ------~d~~i~v~d~~~~~s~~~~~~~~  102 (178)
T 2hxs_A           80 ------AQGVLLVYDITNYQSFENLEDWY  102 (178)
T ss_dssp             ------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ------CCEEEEEEECCCHHHHHHHHHHH
Confidence                  899999999 6655555544443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.86  E-value=1.9e-10  Score=119.09  Aligned_cols=41  Identities=15%  Similarity=0.015  Sum_probs=36.3

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      +.+.+|+++||+|+||||||||+++|+|.    ..|+.|    .+.+.|
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~----~~~~~g----~i~~~G  106 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG----ASADII----VLALIG  106 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHH----SCCSEE----EEEEES
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcC----CCCCEE----EEEEec
Confidence            66779999999999999999999999999    889999    665544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.84  E-value=2e-09  Score=98.81  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=73.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +..+++++|++|+|||||++.+++..+..+.||.|.. ...+.+++ .+.+.+||++|+++.     .++..        
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~--------   72 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGW--------   72 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHH--------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCchh-----HHHHh--------
Confidence            3468999999999999999999998776677888833 34566665 467899999998762     34444        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...+..+..++.++..+........++.++|
T Consensus        73 ---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~  115 (178)
T 2iwr_A           73 ---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG  115 (178)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEE
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence               889999999 666665555554433332222112334555554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.83  E-value=2.4e-09  Score=96.83  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      .+++++|++|||||||++.+.|..+....++.|.+.. .+.+++ ...+.+||++|++.++..+..++..          
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----------   72 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAM----------   72 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC-------------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhh----------
Confidence            5799999999999999999999866666677775553 455554 5688999999998877666665554          


Q ss_pred             ccceeeEEee-cCcccccCCcccc
Q psy16304        275 SRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       275 ~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                       ++++++++| ++...++.+..++
T Consensus        73 -~~~~i~v~d~~~~~s~~~~~~~~   95 (166)
T 3q72_A           73 -GDAYVIVYSVTDKGSFEKASELR   95 (166)
T ss_dssp             -CCEEEEEEETTCHHHHHHHHHHH
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHH
Confidence             889999999 6655554444433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.83  E-value=1.6e-09  Score=110.79  Aligned_cols=80  Identities=8%  Similarity=0.030  Sum_probs=50.0

Q ss_pred             chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304        325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC  397 (537)
Q Consensus       325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~  397 (537)
                      ..+..||+||+|++    +++++++.  ..+ |++++||  |++++..  ..+++.+.+. .+.+++++ +|+......+
T Consensus       215 ~~~~~lS~Gq~q~v----~ia~~l~~~~~~~-~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~-tH~~~~~~~~  288 (322)
T 1e69_A          215 QKLSLLSGGEKALV----GLALLFALMEIKP-SPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI-THNKIVMEAA  288 (322)
T ss_dssp             CBGGGSCHHHHHHH----HHHHHHHHTTTSC-CSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE-CCCTTGGGGC
T ss_pred             CchhhCCHHHHHHH----HHHHHHHHhccCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE-ECCHHHHhhC
Confidence            34789999999999    88888763  133 7999999  9999332  2222222221 23466666 7886544433


Q ss_pred             h---hhhhcCCcEEEE
Q psy16304        398 Q---VYLMSCNCQVYL  410 (537)
Q Consensus       398 ~---i~ll~~G~ii~~  410 (537)
                      +   .+++.+|.....
T Consensus       289 d~~~~v~~~~g~s~~~  304 (322)
T 1e69_A          289 DLLHGVTMVNGVSAIV  304 (322)
T ss_dssp             SEEEEEEESSSCEEEE
T ss_pred             ceEEEEEEeCCEEEEE
Confidence            3   255666765443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.83  E-value=4.6e-09  Score=99.30  Aligned_cols=92  Identities=18%  Similarity=0.338  Sum_probs=66.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|+.|+|||||++.+.+..+ ..+.||.|  +....+.+++ .+.+.+||++|+++++..+..++..       
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------  101 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS-------  101 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh-------
Confidence            46799999999999999999998766 44567777  4456677765 3789999999999888877777766       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...++.+..++.
T Consensus       102 ----~d~iilv~D~~~~~s~~~~~~~~~  125 (201)
T 2hup_A          102 ----ANGAILAYDITKRSSFLSVPHWIE  125 (201)
T ss_dssp             ----CSEEEEEEETTBHHHHHTHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                899999999 66555555544443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.82  E-value=5.3e-09  Score=99.30  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|++|+|||||++.+.+..+ ....|+.|  +....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------   98 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS-------   98 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc-------
Confidence            35799999999999999999988765 34567777  3345666766 4689999999998888766666555       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...++.+..++.
T Consensus        99 ----~d~~i~v~D~~~~~s~~~~~~~~~  122 (201)
T 2ew1_A           99 ----ANALILTYDITCEESFRCLPEWLR  122 (201)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                899999999 66655555544443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.81  E-value=3e-09  Score=112.61  Aligned_cols=158  Identities=19%  Similarity=0.152  Sum_probs=98.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHh
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQ  260 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~  260 (537)
                      .+++.++.++.++|||+|||||||||++|++..       +.+..|+.|    .+.+++...+.++|++|+.....   .
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G----~V~~~~~~~~~l~DtpGli~~a~---~  221 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG----VVEVSEEERFTLADIPGIIEGAS---E  221 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE----EEECSSSCEEEEEECCCCCCCGG---G
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee----EEEecCcceEEEEeccccccchh---h
Confidence            455777889999999999999999999999973       234567777    77776547788999988743210   0


Q ss_pred             hhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304        261 YLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP  340 (537)
Q Consensus       261 ~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~  340 (537)
                      ..+                             +...  .+   ....+....+.++++.    ...+.+||+++++++  
T Consensus       222 ~~~-----------------------------L~~~--fl---~~~era~~lL~vvDls----~~~~~~ls~g~~el~--  261 (416)
T 1udx_A          222 GKG-----------------------------LGLE--FL---RHIARTRVLLYVLDAA----DEPLKTLETLRKEVG--  261 (416)
T ss_dssp             SCC-----------------------------SCHH--HH---HHHTSSSEEEEEEETT----SCHHHHHHHHHHHHH--
T ss_pred             hhh-----------------------------hhHH--HH---HHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHH--
Confidence            000                             0000  00   0112234455667665    344788999999988  


Q ss_pred             ccccccceeccCCceEEEEE---ecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304        341 TVGFNRARVEYGNKYEVFLY---DLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       341 ti~la~all~~~e~p~lllL---DT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~  398 (537)
                        .+++++.. .  |.++++   |.... .....+...++.....++.++++...-.+.+.
T Consensus       262 --~la~aL~~-~--P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~  316 (416)
T 1udx_A          262 --AYDPALLR-R--PSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALK  316 (416)
T ss_dssp             --HHCHHHHH-S--CEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred             --HHhHHhhc-C--CEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHH
Confidence              77877775 4  678876   32222 22223334444334456666577776655544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.80  E-value=5.5e-09  Score=94.42  Aligned_cols=88  Identities=20%  Similarity=0.333  Sum_probs=67.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|+.|||||||++.+.+..+ ....|+.|.+  ...+.+++ ...+.+||++|++.++..+..++..        
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--------   75 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN--------   75 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT--------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc--------
Confidence            4799999999999999999998766 4466887744  34566665 4689999999998888777776665        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        76 ---~d~~i~v~d~~~~~s~~~~~~   96 (170)
T 1ek0_A           76 ---AQAALVVYDVTKPQSFIKARH   96 (170)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CcEEEEEEecCChHHHHHHHH
Confidence               899999999 55544444433

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.80  E-value=8.3e-09  Score=96.98  Aligned_cols=88  Identities=22%  Similarity=0.382  Sum_probs=67.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+.  ..+.+++ ...+.+||++|++.++..+..++..        
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--------   80 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG--------   80 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGG--------
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcC--------
Confidence            5799999999999999999999876 44567777443  4455554 5789999999999888777766665        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        81 ---~d~ii~v~d~~~~~s~~~~~~  101 (203)
T 1zbd_A           81 ---AMGFILMYDITNEESFNAVQD  101 (203)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHHH
Confidence               899999999 55544443333

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.79  E-value=7.4e-09  Score=96.55  Aligned_cols=91  Identities=16%  Similarity=0.288  Sum_probs=68.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|++|+|||||++.|.+..+. ...++.|.+  ...+.+++ +..+.+||++|+++++..+..++..       
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   97 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG-------   97 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc-------
Confidence            367999999999999999999987763 456777743  34455554 5789999999998887777766665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        98 ----~d~vi~v~D~~~~~s~~~~~~~l  120 (193)
T 2oil_A           98 ----AVGALLVFDLTKHQTYAVVERWL  120 (193)
T ss_dssp             ----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHH
Confidence                889999999 5555544444443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.78  E-value=9e-09  Score=94.97  Aligned_cols=91  Identities=18%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|||||||++.+.+..+ ....|+.|.  ....+.+++ ...+.+||++|++.++..+..++..       
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   82 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG-------   82 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc-------
Confidence            46799999999999999999998766 345677773  345566665 3689999999999888766665554       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        83 ----~d~~i~v~d~~~~~s~~~~~~~~  105 (186)
T 2bme_A           83 ----AAGALLVYDITSRETYNALTNWL  105 (186)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHH
Confidence                899999999 6555555444433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.78  E-value=8.5e-09  Score=95.76  Aligned_cols=91  Identities=22%  Similarity=0.373  Sum_probs=69.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+  ...+.+++ ...+.+||++|++.++..+..++..       
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   87 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG-------   87 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc-------
Confidence            46799999999999999999998766 4566777744  34556665 4789999999998887777666665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        88 ----~d~ii~v~d~~~~~s~~~~~~~~  110 (195)
T 1x3s_A           88 ----AQGVILVYDVTRRDTFVKLDNWL  110 (195)
T ss_dssp             ----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHH
Confidence                899999999 5555554444433

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.78  E-value=6.7e-09  Score=97.10  Aligned_cols=91  Identities=22%  Similarity=0.352  Sum_probs=69.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|+|||||++.|.+..+ ..+.|+.|.+..  .+.+++ ...+.+||++|+++++..+..++..       
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   95 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG-------   95 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc-------
Confidence            46799999999999999999998876 467788885543  344443 5789999999998887776666665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        96 ----~d~iilV~d~~~~~s~~~~~~~~  118 (192)
T 2fg5_A           96 ----SAAAVIVYDITKQDSFYTLKKWV  118 (192)
T ss_dssp             ----CSEEEEEEETTCTHHHHHHHHHH
T ss_pred             ----CCEEEEEEeCCCHHHHHHHHHHH
Confidence                889999999 5555444444333

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.77  E-value=9.6e-09  Score=93.87  Aligned_cols=90  Identities=19%  Similarity=0.370  Sum_probs=65.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+++++|+.|||||||++.+.+..+ ....|+.|.+  ...+.+++ ...+.+||++|++.++..+..++..       
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   79 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG-------   79 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTT-------
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhc-------
Confidence            35799999999999999999998765 4456777744  34556665 3689999999999888777666555       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        80 ----~~~~i~v~d~~~~~s~~~~~~~  101 (177)
T 1wms_A           80 ----SDCCLLTFSVDDSQSFQNLSNW  101 (177)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHH
Confidence                889999999 555544444433

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.77  E-value=7.9e-09  Score=93.34  Aligned_cols=89  Identities=16%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|+|||||++.+.+..+ ....|+.|.+  ...+.+++ +..+.+||++|++.++..+..++..       
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-------   78 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG-------   78 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT-------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccC-------
Confidence            35799999999999999999998665 3456777744  34555664 5789999999998888777776665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        79 ----~d~~i~v~d~~~~~s~~~~~~   99 (170)
T 1r2q_A           79 ----AQAAIVVYDITNEESFARAKN   99 (170)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHH
Confidence                899999999 55544443333

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.77  E-value=1.5e-08  Score=91.75  Aligned_cols=91  Identities=18%  Similarity=0.264  Sum_probs=67.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+++++|+.|||||||++.+.+..+ ..+.|+.|.+ ...+..++ ...+.+||++|+.+++..+..++..        
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~--------   74 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISK--------   74 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHH--------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccc--------
Confidence            35799999999999999999998765 3455666633 34445554 4678999999999888777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++...++.+..++
T Consensus        75 ---~~~~i~v~d~~~~~~~~~~~~~~   97 (172)
T 2erx_A           75 ---GHAFILVYSITSRQSLEELKPIY   97 (172)
T ss_dssp             ---CSEEEEEEETTCHHHHHTTHHHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHH
Confidence               899999999 6555555444433

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.76  E-value=7.5e-09  Score=93.63  Aligned_cols=89  Identities=24%  Similarity=0.398  Sum_probs=67.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|+|||||++.+.+..+ ..+.|+.|.+.  ..+.+.+ ...+.+||++|++.++..+..++..       
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-------   78 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG-------   78 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcC-------
Confidence            35799999999999999999999875 45678888443  4455554 4789999999998887766666665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        79 ----~~~~i~v~d~~~~~s~~~~~~   99 (170)
T 1z0j_A           79 ----SAAAIIVYDITKEETFSTLKN   99 (170)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHH
Confidence                889999999 55544443333

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.76  E-value=2.2e-09  Score=100.82  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=45.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC--CC-ccccCcee--eeeEEEEECC---cEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVG--FNRARVEYGN---KYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G--~t~~~i~i~g---~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      ...+|+|+|+.|+|||||++.|.+.  .+ ..+.||.|  +....+.+++   .+.+.+||++|++.++..+..++..  
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--   96 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG--   96 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh--
Confidence            3468999999999999999999987  55 45678877  5556777776   5799999999998877665555444  


Q ss_pred             cCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                               ++++++++| ++...+..+..++
T Consensus        97 ---------~d~~i~v~d~~~~~s~~~~~~~~  119 (208)
T 2yc2_C           97 ---------VYYAILVFDVSSMESFESCKAWF  119 (208)
T ss_dssp             ---------CCEEEEEEETTCHHHHHHHHHHH
T ss_pred             ---------CcEEEEEEECCCHHHHHHHHHHH
Confidence                     899999999 5555444444433

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.76  E-value=7.6e-09  Score=97.29  Aligned_cols=93  Identities=22%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      .+..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|.+  ...+.+++ ...+.+||++|++.++..+..++..     
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-----  100 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK-----  100 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH-----
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh-----
Confidence            3567899999999999999999998766 4566787743  45566665 4779999999999888877777776     


Q ss_pred             CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                            ++++++++| ++...+..+..++
T Consensus       101 ------~d~iilv~d~~~~~s~~~~~~~~  123 (199)
T 2p5s_A          101 ------ADGVLLLYDVTCEKSFLNIREWV  123 (199)
T ss_dssp             ------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ------CCEEEEEEECCChHHHHHHHHHH
Confidence                  899999999 5555555444433

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.75  E-value=8.4e-09  Score=95.96  Aligned_cols=90  Identities=21%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|+|+.|+|||||++.|++..+ ..+.|+.|.+.  ..+.+++ ...+.+||++|++.++..+..++..        
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--------   94 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG--------   94 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT--------
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC--------
Confidence            5799999999999999999998876 44567777443  4455554 5789999999998777655555554        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++...+..+..++
T Consensus        95 ---~d~ii~v~d~~~~~s~~~~~~~~  117 (189)
T 2gf9_A           95 ---AMGFLLMYDIANQESFAAVQDWA  117 (189)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHH
Confidence               889999999 5555555444433

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.75  E-value=9.3e-09  Score=94.21  Aligned_cols=91  Identities=19%  Similarity=0.376  Sum_probs=61.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ..+++++|+.|+|||||++.+.+..+.  .+.|+.|.+.  ..+.+++ ...+.+||++|++.++..+..++..      
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~------   83 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD------   83 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC------
Confidence            467999999999999999999987662  4567777443  3345565 3689999999998877666555554      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                           ++++++++| ++...+..+..++
T Consensus        84 -----~d~ii~v~d~~~~~s~~~~~~~~  106 (180)
T 2g6b_A           84 -----AHALLLLYDVTNKASFDNIQAWL  106 (180)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             -----CCEEEEEEECCCHHHHHHHHHHH
Confidence                 899999999 5555544444433

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.75  E-value=1.1e-08  Score=93.29  Aligned_cols=90  Identities=16%  Similarity=0.275  Sum_probs=69.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+++++|+.|+|||||++.|.+..+ ..+.++.|.+  ...+.+++ ...+.+||++|++.++..+..++..       
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   87 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG-------   87 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc-------
Confidence            46799999999999999999998766 4456777743  44555665 4789999999998888777777776       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        88 ----~d~~i~v~d~~~~~s~~~~~~~  109 (179)
T 1z0f_A           88 ----AAGALMVYDITRRSTYNHLSSW  109 (179)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred             ----CCEEEEEEeCcCHHHHHHHHHH
Confidence                899999999 555544444433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.75  E-value=7.6e-09  Score=93.40  Aligned_cols=89  Identities=24%  Similarity=0.408  Sum_probs=66.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|||||||++.|.+..+ ..+.|+.|  +....+.+++ ...+.+||++|+..++..+..++..       
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   77 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG-------   77 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTT-------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcC-------
Confidence            35799999999999999999998766 44567777  3345566665 4789999999998777666666555       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...++.+..
T Consensus        78 ----~d~~i~v~d~~~~~s~~~~~~   98 (168)
T 1z2a_A           78 ----AQACVLVFSTTDRESFEAISS   98 (168)
T ss_dssp             ----CCEEEEEEETTCHHHHHTHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHH
Confidence                899999999 55544444443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.74  E-value=9.2e-09  Score=114.14  Aligned_cols=60  Identities=23%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        199 ILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +||||+||||||||+++|+|.    ..| ++|    .+.+.| ..+..........++    ..+++++|+..+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl----~~P~~sG----~vt~~g-~~i~~~~~~~~~~~~----~~i~~v~Q~~~l  108 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGV----ALPRGSG----IVTRCP-LVLKLKKLVNEDKWR----GKVSYQDYEIEI  108 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSC----C-----------CCCSC-EEEEEEECSSSSCCE----EEESCC---CCC
T ss_pred             EEEECCCCChHHHHHHHHhCC----CCCCCCC----eEEEcC-EEEEEecCCccccce----eEEeeecccccC
Confidence            999999999999999999999    888 799    888887 766555543333333    678999988663

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.74  E-value=1.1e-08  Score=95.04  Aligned_cols=91  Identities=22%  Similarity=0.415  Sum_probs=68.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhh-HHHHhhhhccccCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPL  270 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~  270 (537)
                      -.+|+|+|+.|||||||++.|.+..+ ....|+.|  +....+.+++ ...+.+||++|+++++ ..+..++..      
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------   93 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN------   93 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC------
Confidence            46899999999999999999998766 34567777  3445666665 4789999999998877 666666655      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                           ++++++++| ++...+..+..++
T Consensus        94 -----~d~iilv~D~~~~~s~~~~~~~~  116 (189)
T 1z06_A           94 -----VHAVVFVYDMTNMASFHSLPAWI  116 (189)
T ss_dssp             -----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred             -----CCEEEEEEECcCHHHHHHHHHHH
Confidence                 899999999 6555554444433

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.74  E-value=1.3e-08  Score=94.85  Aligned_cols=92  Identities=14%  Similarity=0.247  Sum_probs=68.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|++|||||||++.|.+..+ ..+.|+.|.+. ..+.+++ ...+.+||++|+..++..+..++..       
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   79 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK-------   79 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHH-------
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhcc-------
Confidence            456899999999999999999998765 34557766333 3444554 4689999999998888777777776       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        80 ----~d~~i~v~d~~~~~s~~~~~~~~  102 (199)
T 2gf0_A           80 ----GHAFILVFSVTSKQSLEELGPIY  102 (199)
T ss_dssp             ----CSEEEEEEETTCHHHHHTTHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHH
Confidence                899999999 5555555444433

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.74  E-value=1.3e-08  Score=94.06  Aligned_cols=91  Identities=20%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee---EEEEECC----------cEEEEEeecCCCchhhHHHHhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR---ARVEYGN----------KYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~---~~i~i~g----------~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      -.+|+|+|+.|+|||||++.|.+..+ ....|+.|.+.   ..+.+++          ...+.+||++|++.++..+..+
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            36799999999999999999998765 44567777443   3444553          3789999999999888777666


Q ss_pred             hhccccCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                      +..           ++++++++| ++...+..+..++
T Consensus        91 ~~~-----------~d~~i~v~d~~~~~s~~~~~~~~  116 (195)
T 3bc1_A           91 FRD-----------AMGFLLLFDLTNEQSFLNVRNWI  116 (195)
T ss_dssp             TTT-----------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             HcC-----------CCEEEEEEECCCHHHHHHHHHHH
Confidence            655           899999999 5555554444433

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.74  E-value=9.6e-09  Score=95.26  Aligned_cols=88  Identities=19%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+++++|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   78 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD-------   78 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCC-------
Confidence            346799999999999999999998766 44678877333 2344544 5789999999998776555544443       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus        79 ----~~~~i~v~d~~~~~s~~~~   97 (184)
T 1m7b_A           79 ----SDAVLICFDISRPETLDSV   97 (184)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CcEEEEEEECCCHHHHHHH
Confidence                889999999 655554443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.74  E-value=1.1e-08  Score=95.76  Aligned_cols=90  Identities=20%  Similarity=0.374  Sum_probs=65.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|+|||||++.|.+..+ ....|+.|.  ....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------   98 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS-------   98 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC-------
Confidence            45799999999999999999999866 345677763  345566665 4689999999999888888777776       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        99 ----~d~iilV~D~~~~~s~~~~~~~  120 (192)
T 2il1_A           99 ----AKGIILVYDITKKETFDDLPKW  120 (192)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHH
Confidence                899999999 655555544443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.74  E-value=1.2e-08  Score=91.82  Aligned_cols=88  Identities=18%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+++++|++|||||||++.+.+..+ ..+.|+.|.. ...+.+++ ...+.+||++|++.++..+..++..        
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--------   74 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN--------   74 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH--------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc--------
Confidence            35799999999999999999997665 4455666622 34556665 3568999999998888777777766        


Q ss_pred             CCccceeeEEee-cCcccccCCc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                         ++++++++| ++...+..+.
T Consensus        75 ---~~~~i~v~d~~~~~s~~~~~   94 (167)
T 1kao_A           75 ---GQGFILVYSLVNQQSFQDIK   94 (167)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHH
T ss_pred             ---CCEEEEEEeCCCHHHHHHHH
Confidence               889999999 5554443333

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.74  E-value=9.5e-09  Score=92.46  Aligned_cols=88  Identities=16%  Similarity=0.299  Sum_probs=64.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+.+++..+..++..         
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~---------   75 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS---------   75 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH---------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhc---------
Confidence            5799999999999999999998765 45567777433 3455665 3689999999998888877777776         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++...+..+..
T Consensus        76 --~d~~i~v~d~~~~~s~~~~~~   96 (168)
T 1u8z_A           76 --GEGFLCVFSITEMESFAATAD   96 (168)
T ss_dssp             --CSEEEEEEETTCHHHHHHHHH
T ss_pred             --CCEEEEEEECCCHHHHHHHHH
Confidence              899999999 55554444433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.74  E-value=1.3e-08  Score=94.89  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=67.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +..+|+|+|++|||||||++.+++..+ ..+.||.|.....+.+++ .+.+.+||++|++.++     ++..        
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~--------   85 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW--------   85 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH--------
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecC--------
Confidence            457899999999999999999888766 446788775556777776 4678889999998765     3333        


Q ss_pred             CCccceeeEEee-cCcccccCCccccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA  300 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~  300 (537)
                         ++++++++| ++...+..+..++..+
T Consensus        86 ---~~~~i~v~d~~~~~s~~~~~~~~~~i  111 (184)
T 3ihw_A           86 ---VDAVVFVFSLEDEISFQTVYNYFLRL  111 (184)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence               789999999 6666555554444433

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.74  E-value=9e-09  Score=92.82  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=67.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+..++..+..++..         
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~---------   74 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKN---------   74 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHH---------
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc---------
Confidence            5799999999999999999998766 45667777433 2344443 5789999999998888777777776         


Q ss_pred             CccceeeEEee-cCcccccCCcccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                        ++++++++| ++...+..+..++
T Consensus        75 --~d~~i~v~d~~~~~s~~~~~~~~   97 (167)
T 1c1y_A           75 --GQGFALVYSITAQSTFNDLQDLR   97 (167)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHH
Confidence              889999999 6555544444433

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.73  E-value=3.4e-08  Score=90.99  Aligned_cols=83  Identities=16%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCchhhHHHH--------hhh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSEDFRTIWK--------QYL  262 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~--------~~i  262 (537)
                      +|.+++|+|++|||||||++.|++..+....+..|    +....+.+++ ..+.+||++|+.+.....+        .++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            68899999999999999999999975433333333    2345677776 8899999999864221111        122


Q ss_pred             hccccCCCCCCCccceeeEEee-cCccc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIM-CGVHQ  289 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~D-s~~~~  289 (537)
                      ..           ++++++++| ++...
T Consensus        82 ~~-----------ad~~i~v~D~~~~~s   98 (172)
T 2gj8_A           82 EQ-----------ADRVLFMVDGTTTDA   98 (172)
T ss_dssp             HT-----------CSEEEEEEETTTCCC
T ss_pred             Hh-----------CCEEEEEEECCCCCC
Confidence            22           789999999 55443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.73  E-value=1.4e-08  Score=96.63  Aligned_cols=91  Identities=21%  Similarity=0.390  Sum_probs=68.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-----------cEEEEEeecCCCchhhHHHHhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQY  261 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-----------~~~i~~~D~~G~~~~r~~~~~~  261 (537)
                      -.+|+|+|+.|||||||++.|.+..+ ..+.|+.|..  ...+.+++           ...+.+||++|++.++..+..+
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            35799999999999999999999766 3456777733  34455553           3789999999998888777777


Q ss_pred             hhccccCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                      +..           ++++++++| ++...+..+..++
T Consensus       105 ~~~-----------~d~iilV~D~~~~~s~~~~~~~l  130 (217)
T 2f7s_A          105 FRD-----------AMGFLLMFDLTSQQSFLNVRNWM  130 (217)
T ss_dssp             HTT-----------CCEEEEEEETTCHHHHHHHHHHH
T ss_pred             hcC-----------CCEEEEEEECcCHHHHHHHHHHH
Confidence            766           899999999 5555544444433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.73  E-value=1.2e-08  Score=92.94  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee--eEEEEECC-cEEEEEeecCCCch--hhHHHHhhhhccccCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED--FRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~--~r~~~~~~i~~v~Q~~~l  271 (537)
                      .+++|+|++|+|||||++.|.+..+....++.|++  ...+.+++ ...+.+||++|+..  .+.+...++..       
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~-------   77 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG-------   77 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS-------
T ss_pred             EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc-------
Confidence            57999999999999999999998776556677744  34566665 36889999999876  33333333333       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        78 ----~~~~i~v~d~~~~~s~~~~~~~   99 (175)
T 2nzj_A           78 ----GSAYVIVYSIADRGSFESASEL   99 (175)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHH
Confidence                788999999 655554444433

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.73  E-value=1.2e-08  Score=93.45  Aligned_cols=89  Identities=17%  Similarity=0.293  Sum_probs=66.8

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|+|||||++.+.+..+ ....++.|  +....+.+++ ...+.+||++|+..++..+..++..       
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   84 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG-------   84 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhcc-------
Confidence            46799999999999999999998766 33457777  3344566665 4789999999998887777666665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...++.+..
T Consensus        85 ----~d~~i~v~d~~~~~s~~~~~~  105 (181)
T 2efe_B           85 ----AAAAIIVFDVTNQASFERAKK  105 (181)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHH
Confidence                889999999 55544443333

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.72  E-value=1.4e-08  Score=92.65  Aligned_cols=90  Identities=21%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|+.|+|||||++.+.+..+ ....|+.|  +....+.+++ ...+.+||++|++.++..+..++..       
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-------   86 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-------   86 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcC-------
Confidence            36799999999999999999998765 34567766  3345566665 3689999999998887777766665       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        87 ----~d~~i~v~d~~~~~s~~~~~~~  108 (179)
T 2y8e_A           87 ----STVAVVVYDITNTNSFHQTSKW  108 (179)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHH
Confidence                889999999 555444444433

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.72  E-value=6.8e-09  Score=93.92  Aligned_cols=90  Identities=24%  Similarity=0.420  Sum_probs=62.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|+.|+|||||++.+.+..+ ....|+.|  +....+.+++ ...+.+||++|++.++..+..++..        
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--------   75 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG--------   75 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT--------
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc--------
Confidence            4799999999999999999998766 44567776  3344556655 4789999999998777666666555        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++...+..+..++
T Consensus        76 ---~d~~i~v~d~~~~~s~~~~~~~~   98 (170)
T 1g16_A           76 ---AMGIILVYDITDERTFTNIKQWF   98 (170)
T ss_dssp             ---EEEEEEEEETTCHHHHHTHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHH
Confidence               889999999 5555444444433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.72  E-value=8.3e-09  Score=94.36  Aligned_cols=90  Identities=24%  Similarity=0.375  Sum_probs=64.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+++|++|||||||++.|.+..+ ....|+.|  +....+.+++ ...+.+||++|++.++..+..++..       
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   81 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG-------   81 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc-------
Confidence            36799999999999999999999866 34566766  3345566665 3789999999988776555555444       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        82 ----~d~~i~v~d~~~~~s~~~~~~~  103 (181)
T 3tw8_B           82 ----THGVIVVYDVTSAESFVNVKRW  103 (181)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHH
Confidence                889999999 555544444333

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.72  E-value=6.9e-09  Score=94.02  Aligned_cols=89  Identities=17%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+++++|++|+|||||++.+.+..+ ....|+.|.  ....+.+++ .+.+.+||++|+++++..+..++.        
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--------   77 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR--------   77 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST--------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc--------
Confidence            35799999999999999999998766 345677773  334566654 468899999998876654443333        


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         .++++++++| ++...+..+..
T Consensus        78 ---~~d~~i~v~d~~~~~s~~~~~~   99 (170)
T 1z08_A           78 ---DSNGAILVYDITDEDSFQKVKN   99 (170)
T ss_dssp             ---TCSEEEEEEETTCHHHHHHHHH
T ss_pred             ---cCCEEEEEEECcCHHHHHHHHH
Confidence               3889999999 55544444433

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.72  E-value=8.6e-09  Score=97.25  Aligned_cols=89  Identities=22%  Similarity=0.388  Sum_probs=66.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|+.|||||||++.|.+..+ ..+.|+.|  +....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   80 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG-------   80 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC-------
Confidence            35799999999999999999998766 34567777  3345666765 4689999999998777655555544       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        81 ----~d~vilv~d~~~~~s~~~~~~  101 (206)
T 2bcg_Y           81 ----SHGIIIVYDVTDQESFNGVKM  101 (206)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHH
Confidence                889999999 55544443333

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.72  E-value=1.2e-08  Score=97.53  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|++|+|||||++.+.+..+ ..+.||.|.+.. .+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------   98 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD-------   98 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC-------
Confidence            467899999999999999999998776 456788885432 334443 4789999999998887666665554       


Q ss_pred             CCCccceeeEEee-cCcccccC-Ccccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSG-IPDELTS  299 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~-l~~~l~~  299 (537)
                          ++++++++| ++...+.. +..++..
T Consensus        99 ----~d~~i~v~d~~~~~s~~~~~~~~~~~  124 (214)
T 3q3j_B           99 ----SDAVLLCFDISRPETVDSALKKWRTE  124 (214)
T ss_dssp             ----CSEEEEEEETTCTHHHHHHHTHHHHH
T ss_pred             ----CeEEEEEEECcCHHHHHHHHHHHHHH
Confidence                899999999 66655554 3444433

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.72  E-value=1.3e-08  Score=94.61  Aligned_cols=91  Identities=21%  Similarity=0.348  Sum_probs=68.8

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|+.|||||||++.|.+..+ ....|+.|.  ....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   88 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG-------   88 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh-------
Confidence            35799999999999999999998765 345577663  345566665 3689999999998888777777665       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        89 ----~d~~i~v~d~~~~~s~~~~~~~~  111 (196)
T 3tkl_A           89 ----AHGIIVVYDVTDQESFNNVKQWL  111 (196)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHH
Confidence                899999999 6655555444443

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.71  E-value=1.1e-08  Score=104.00  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC--c--cccCceeeeeEEEEECCcEEEEEeecCCCchh-----hHHHHhhhhcc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI--I--SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF-----RTIWKQYLGTV  265 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~--~--~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~-----r~~~~~~i~~v  265 (537)
                      .+.+++|+|++|||||||++.+.+...  .  .+.+|.|.....+.++++..+.+||++|++.+     +..+..++.. 
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM-   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc-
Confidence            356899999999999999999888632  1  34577776666777766799999999999877     3444455444 


Q ss_pred             ccCCCCCCCccceeeEEee-cCcccccCCccc
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                                ++++++++| ++...++++..+
T Consensus        81 ----------ad~vi~V~D~t~~~s~~~l~~~  102 (307)
T 3r7w_A           81 ----------VQVLIHVFDVESTEVLKDIEIF  102 (307)
T ss_dssp             ----------CSEEEEEEETTCSCHHHHHHHH
T ss_pred             ----------CCEEEEEEECCChhhHHHHHHH
Confidence                      899999999 666555544433

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.71  E-value=8.1e-09  Score=96.35  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++.+ ..++..       
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~-------   91 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNW-------   91 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTT-------
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhh-------
Confidence            457899999999999999999998766 55678888332 3445554 478899999999876543 344444       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...+..+..++.
T Consensus        92 ----~~~~ilv~d~~~~~s~~~~~~~~~  115 (187)
T 3c5c_A           92 ----AHAFLVVYSVDSRQSFDSSSSYLE  115 (187)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                889999999 66655555544443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.71  E-value=1.5e-08  Score=95.11  Aligned_cols=90  Identities=17%  Similarity=0.306  Sum_probs=68.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|||||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|+..++..+..++..       
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   85 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS-------   85 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH-------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh-------
Confidence            346799999999999999999998765 4566777743 24455665 3689999999999888877777776       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        86 ----~~~~i~v~d~~~~~s~~~~~~  106 (206)
T 2bov_A           86 ----GEGFLCVFSITEMESFAATAD  106 (206)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHH
Confidence                889999999 55544444433

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.71  E-value=1.3e-08  Score=93.95  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+++|+.|||||||++.|.+..+ ..+.++.+.. ...+.+++ ...+.+||++|++.++..+..++..        
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------   75 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT--------   75 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH--------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc--------
Confidence            35799999999999999999998765 4455666522 33455555 3568889999999888777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        76 ---~~~~i~v~d~~~~~s~~~~~~   96 (189)
T 4dsu_A           76 ---GEGFLCVFAINNTKSFEDIHH   96 (189)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHHHH
Confidence               899999999 55544443333

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.70  E-value=1.4e-08  Score=96.68  Aligned_cols=88  Identities=19%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+|+|+|++|+|||||++.+++..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------   99 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD-------   99 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC-------
Confidence            346899999999999999999999876 44578887433 2344554 5789999999998776555544443       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus       100 ----~d~~ilv~D~~~~~s~~~~  118 (205)
T 1gwn_A          100 ----SDAVLICFDISRPETLDSV  118 (205)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHH
Confidence                889999999 655554443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.70  E-value=1e-08  Score=95.63  Aligned_cols=91  Identities=18%  Similarity=0.292  Sum_probs=65.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|||||||++.|.+..+ ....|+.|  +....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   93 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG-------   93 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc-------
Confidence            46799999999999999999998766 34456777  3345666665 4789999999998877666666655       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        94 ----~d~ii~v~d~~~~~s~~~~~~~l  116 (191)
T 2a5j_A           94 ----AAGALLVYDITRRETFNHLTSWL  116 (191)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHH
Confidence                899999999 5555555444433

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.70  E-value=1.1e-08  Score=96.50  Aligned_cols=91  Identities=20%  Similarity=0.362  Sum_probs=60.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|||||||++.|.+..+ ....|+.|  +....+.+++ ...+.+||++|+..++..+..++..       
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------   97 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG-------   97 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc-------
Confidence            46799999999999999999998766 34567777  3345566665 4789999999988776666665555       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        98 ----~d~~i~v~d~~~~~s~~~~~~~~  120 (200)
T 2o52_A           98 ----AAGALLVYDITSRETYNSLAAWL  120 (200)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHH
Confidence                899999999 6655555444433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.69  E-value=1.3e-09  Score=119.01  Aligned_cols=155  Identities=9%  Similarity=-0.046  Sum_probs=84.8

Q ss_pred             cccc-cCCCCCeEEEEeCCCCcHHHHHHH--HhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304        188 HLSL-FDFRSVPILVLGLDNAGKSSIIKR--ILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT  264 (537)
Q Consensus       188 ~~~l-~~~~G~~vgLVG~NGAGKSTLL~~--L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~  264 (537)
                      .+++ .+.+|+.++|+|+||||||||+++  +.|.    ..|+.|    .+.+.+      .+.  .... ......+++
T Consensus        30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl----~~~~~g----~i~v~g------~~~--~~~~-~~~~~~~g~   92 (525)
T 1tf7_A           30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI----IEFDEP----GVFVTF------EET--PQDI-IKNARSFGW   92 (525)
T ss_dssp             HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH----HHHCCC----EEEEES------SSC--HHHH-HHHHGGGTC
T ss_pred             HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH----HhCCCC----EEEEEE------eCC--HHHH-HHHHHHcCC
Confidence            3456 677999999999999999999999  6798    778888    776655      111  0111 122356899


Q ss_pred             cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  344 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l  344 (537)
                      ++|++....    . +...+....                  ......+..+|+... ....+.+||+|+++++    .+
T Consensus        93 ~~q~~~~~~----~-l~~~~~~~~------------------~~~~~~l~~~~l~~~-~~~~~~~LS~g~~~~l----il  144 (525)
T 1tf7_A           93 DLAKLVDEG----K-LFILDASPD------------------PEGQEVVGGFDLSAL-IERINYAIQKYRARRV----SI  144 (525)
T ss_dssp             CHHHHHHTT----S-EEEEECCCC------------------SSCCSCCSSHHHHHH-HHHHHHHHHHHTCSEE----EE
T ss_pred             ChHHhhccC----c-EEEEecCcc------------------cchhhhhcccCHHHH-HHHHHHHHHHcCCCEE----EE
Confidence            999765211    1 111120000                  000111223454443 3455788999888777    55


Q ss_pred             ccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcch
Q psy16304        345 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRP  393 (537)
Q Consensus       345 a~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~  393 (537)
                      +......+   . .-+|......+..+.+.+.+. +.+++++ +|+...
T Consensus       145 De~t~~~~---~-~~lD~~~~~~l~~ll~~l~~~-g~tvl~i-tH~~~~  187 (525)
T 1tf7_A          145 DSVTSVFQ---Q-YDASSVVRRELFRLVARLKQI-GATTVMT-TERIEE  187 (525)
T ss_dssp             ECSTTTST---T-TCCHHHHHHHHHHHHHHHHHH-TCEEEEE-EECSSS
T ss_pred             CCHHHHHH---h-cCCHHHHHHHHHHHHHHHHHC-CCEEEEE-ecCCCC
Confidence            44443211   1 012333334444444555444 3445554 566554

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.69  E-value=1.8e-08  Score=92.57  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+++++|++|+|||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|++.++..+..++..        
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------   76 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ--------   76 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT--------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC--------
Confidence            46799999999999999999997655 4456666622 23455554 4677899999998777555554443        


Q ss_pred             CCccceeeEEee-cCcccccCC
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l  293 (537)
                         ++++++++| ++...+..+
T Consensus        77 ---~d~~i~v~d~~~~~s~~~~   95 (186)
T 1mh1_A           77 ---TDVSLICFSLVSPASFENV   95 (186)
T ss_dssp             ---CSEEEEEEETTCHHHHHHH
T ss_pred             ---CcEEEEEEECCChhhHHHH
Confidence               899999999 555444433

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.68  E-value=1.6e-08  Score=94.87  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+++|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   91 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN-------   91 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT-------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC-------
Confidence            567899999999999999999998766 45667777333 3455555 3678899999998777665555544       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus        92 ----~~~~i~v~d~~~~~s~~~~  110 (201)
T 2q3h_A           92 ----TDIFLLCFSVVSPSSFQNV  110 (201)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CcEEEEEEECCCHHHHHHH
Confidence                889999999 655554443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.68  E-value=1.1e-08  Score=94.17  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      -.+|+|+|++|||||||++.+.+..+ ..+.|+.|.+. ..+.+++ .+.+.+||++|++.++..+..++..        
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--------   77 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID--------   77 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTT--------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhc--------
Confidence            35799999999999999999996555 55678888443 3445554 3678999999998776555444444        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++...++.+..+
T Consensus        78 ---~~~~i~v~d~~~~~s~~~~~~~   99 (181)
T 3t5g_A           78 ---INGYILVYSVTSIKSFEVIKVI   99 (181)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHH
Confidence               889999999 655554444433

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.68  E-value=2.1e-08  Score=93.85  Aligned_cols=92  Identities=15%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+.. +..+..++..       
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~-------   98 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW-------   98 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH-------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc-------
Confidence            567899999999999999999998766 45667777443 2355565 47899999999887 5566666666       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...++.+..++.
T Consensus        99 ----~d~iilv~D~~~~~s~~~~~~~~~  122 (196)
T 2atv_A           99 ----GEGFVLVYDITDRGSFEEVLPLKN  122 (196)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHHHH
Confidence                899999999 66665555544443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.68  E-value=1.5e-08  Score=94.21  Aligned_cols=88  Identities=23%  Similarity=0.381  Sum_probs=65.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-c------------------------------
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-K------------------------------  240 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~------------------------------  240 (537)
                      +..+|+|+|+.|||||||++.|.+..+ ..+.|+.|  +....+.+++ .                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999866 44567777  3344455543 2                              


Q ss_pred             -------EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCC
Q psy16304        241 -------YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       241 -------~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                             ..+.+||++|++.+...+..++..           ++++++++| ++...+..+
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-----------~d~~i~v~D~~~~~s~~~~  135 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRG-----------ATCAIVVFDISNSNTLDRA  135 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTT-----------CSEEEEEEETTCHHHHHHH
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcC-----------CCEEEEEEECCCHHHHHHH
Confidence                   789999999998877766666665           889999999 554443333

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.68  E-value=1.6e-08  Score=92.48  Aligned_cols=90  Identities=14%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+++++|+.|||||||++.|.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+++++..+..++..       
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-------   80 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA-------   80 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH-------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhh-------
Confidence            346799999999999999999998765 45667777332 3455665 3688999999998887777777666       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        81 ----~d~~i~v~d~~~~~s~~~~~~  101 (181)
T 2fn4_A           81 ----GHGFLLVFAINDRQSFNEVGK  101 (181)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHH
T ss_pred             ----CCEEEEEEeCCCHHHHHHHHH
Confidence                889999999 55544443333

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.67  E-value=1.9e-08  Score=92.47  Aligned_cols=89  Identities=16%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+|+|+.|||||||++.|.+..+ ..+.++.|... ..+.+++ .+.+.+||++|+..++..+..++..        
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--------   89 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS--------   89 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH--------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhcc--------
Confidence            46799999999999999999998766 44567777433 3455665 3689999999999888887777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        90 ---~d~~i~v~d~~~~~s~~~~~~  110 (187)
T 2a9k_A           90 ---GEGFLCVFSITEMESFAATAD  110 (187)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHHH
Confidence               899999999 55544444433

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.67  E-value=1.1e-08  Score=95.03  Aligned_cols=89  Identities=13%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC--CC-ccccCceeeeeEEEEEC------CcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVGFNRARVEYG------NKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G~t~~~i~i~------g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .+++|+|++|||||||++.+++.  .+ ..+.||.|.......+.      ..+.+.+||++|+++++..+..++..   
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---   79 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQ---   79 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccC---
Confidence            47999999999999999999995  33 34567888554443321      24788999999998877666666555   


Q ss_pred             CCCCCCCccceeeEEee-cCc-ccccCCccc
Q psy16304        268 TPLGRPDSRTCQVYLIM-CGV-HQVSGIPDE  296 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~D-s~~-~~~~~l~~~  296 (537)
                              ++++++++| ++. ..+..+..+
T Consensus        80 --------~~~~i~v~d~~~~~~s~~~~~~~  102 (184)
T 2zej_A           80 --------RALYLAVYDLSKGQAEVDAMKPW  102 (184)
T ss_dssp             --------SEEEEEEEEGGGCHHHHHTHHHH
T ss_pred             --------CcEEEEEEeCCcchhHHHHHHHH
Confidence                    777888999 554 234444433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.67  E-value=4.9e-09  Score=96.62  Aligned_cols=90  Identities=20%  Similarity=0.377  Sum_probs=45.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|  +....+.+++ ...+.+||++|++.++..+..++..       
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   80 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-------   80 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc-------
Confidence            36799999999999999999998765 34567777  3345566665 4789999999998776544444433       


Q ss_pred             CCCccceeeEEee-cCcccccCCccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                          ++++++++| ++...+..+..+
T Consensus        81 ----~d~~i~v~d~~~~~s~~~~~~~  102 (183)
T 2fu5_C           81 ----AMGIMLVYDITNEKSFDNIRNW  102 (183)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHHHHH
Confidence                899999999 555544444433

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.67  E-value=1.3e-08  Score=95.71  Aligned_cols=89  Identities=16%  Similarity=0.328  Sum_probs=64.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+  ...+.+++ .+.+.+||++|+..++..+..++..      
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------   80 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG------   80 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC------
Confidence            346799999999999999999998766 4556777743  33455554 4789999999988776544444443      


Q ss_pred             CCCCccceeeEEee-cCcccccCCc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                           ++++++++| ++...+..+.
T Consensus        81 -----~d~~i~v~d~~~~~s~~~~~  100 (207)
T 1vg8_A           81 -----ADCCVLVFDVTAPNTFKTLD  100 (207)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHH
T ss_pred             -----CcEEEEEEECCCHHHHHHHH
Confidence                 889999999 5554444443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.67  E-value=2e-08  Score=92.53  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------   89 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT-------   89 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH-------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc-------
Confidence            356899999999999999999998765 4566777633 33445554 3567789999998888777777776       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++...+..+..++
T Consensus        90 ----~d~~i~v~d~~~~~s~~~~~~~~  112 (183)
T 3kkq_A           90 ----GDGFLIVYSVTDKASFEHVDRFH  112 (183)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHH
Confidence                899999999 6655555554443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.67  E-value=6.3e-08  Score=98.16  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+++|||+||||||||+++|.|.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            45699999999999999999985

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.66  E-value=9.5e-09  Score=95.85  Aligned_cols=93  Identities=22%  Similarity=0.330  Sum_probs=70.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      .-.+|+|+|+.|+|||||++.+.+..+ ..+.|+.|++.  ..+.+++ ++.+.+||++|++.++..+..++..      
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------   95 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG------   95 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT------
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc------
Confidence            346899999999999999999998765 44567777433  4444443 5899999999998888777777766      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                           ++++++++| ++...++.+..++.
T Consensus        96 -----~d~~i~v~d~~~~~s~~~~~~~~~  119 (191)
T 3dz8_A           96 -----AMGFILMYDITNEESFNAVQDWAT  119 (191)
T ss_dssp             -----CCEEEEEEETTCHHHHHTHHHHHH
T ss_pred             -----CCEEEEEEECcCHHHHHHHHHHHH
Confidence                 899999999 66655555554443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.66  E-value=1.3e-08  Score=94.55  Aligned_cols=79  Identities=20%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCcc-----------ccCceeeeeEEE---EECC-cEEEEEeecCCCchhhHHHHh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIIS-----------LVPTVGFNRARV---EYGN-KYEVFLYDLGGSEDFRTIWKQ  260 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~-----------~~Pt~G~t~~~i---~i~g-~~~i~~~D~~G~~~~r~~~~~  260 (537)
                      ..+|+|+|++|||||||++.+.|.....           ..||.|++....   .+++ .+.+.+||++|++.++..+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   93 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKL   93 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHH
Confidence            4679999999999999999999864333           235666443332   2222 578999999999988888877


Q ss_pred             hhhccccCCCCCCCccceeeEEeec
Q psy16304        261 YLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       261 ~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ++..           ++++++++|.
T Consensus        94 ~~~~-----------~d~~i~v~D~  107 (198)
T 3t1o_A           94 ILRG-----------VDGIVFVADS  107 (198)
T ss_dssp             HTTT-----------CCEEEEEEEC
T ss_pred             HHhc-----------CCEEEEEEEC
Confidence            7766           8999999993

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.66  E-value=1.5e-08  Score=95.93  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+++|+|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   80 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG-------   80 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT-------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC-------
Confidence            456899999999999999999998766 45667777333 2445554 4789999999998877666555554       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus        81 ----~d~~ilv~d~~~~~s~~~~   99 (212)
T 2j0v_A           81 ----ADIFVLAFSLISKASYENV   99 (212)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHH
Confidence                899999999 665554443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.66  E-value=2e-08  Score=94.87  Aligned_cols=90  Identities=26%  Similarity=0.426  Sum_probs=66.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+|+|+|+.|+|||||++.|.+..+ ....|+.|  +....+.+++ .+.+.+||++|++.++..+..++..      
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------   92 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG------   92 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc------
Confidence            457899999999999999999998766 44567777  3345566665 3689999999998777666666655      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                           ++++++++| ++...+..+..
T Consensus        93 -----~d~ii~v~d~~~~~s~~~~~~  113 (213)
T 3cph_A           93 -----AMGIILVYDVTDERTFTNIKQ  113 (213)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHHH
T ss_pred             -----CCEEEEEEECCCHHHHHHHHH
Confidence                 889999999 55544444333

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.65  E-value=2.2e-08  Score=115.55  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      +++.+++...+|++++|+||||||||||++++.
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            456778888899999999999999999999993

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.65  E-value=4.9e-08  Score=91.12  Aligned_cols=87  Identities=20%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|++|+|||||++.+++..+ ..+.||.|.+. ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   94 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD-------   94 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC-------
Confidence            356899999999999999999998766 45678888443 3344554 4667999999998887666655554       


Q ss_pred             CCCccceeeEEee-cCcccccC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSG  292 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~  292 (537)
                          ++++++++| ++...+..
T Consensus        95 ----~d~~i~v~d~~~~~s~~~  112 (194)
T 3reg_A           95 ----SDVVLLCFAVNNRTSFDN  112 (194)
T ss_dssp             ----CSEEEEEEETTCHHHHHH
T ss_pred             ----CcEEEEEEECCCHHHHHH
Confidence                899999999 65554444

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.65  E-value=1.8e-08  Score=94.84  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=66.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|||||||++.|.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------   95 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG-------   95 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT-------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc-------
Confidence            467899999999999999999998876 45567777443 2222332 5888999999998776555555544       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...+..+..++.
T Consensus        96 ----~d~~i~v~d~~~~~s~~~~~~~~~  119 (201)
T 3oes_A           96 ----VHGYVLVYSVTSLHSFQVIESLYQ  119 (201)
T ss_dssp             ----CCEEEEEEETTCHHHHHHHHHHHH
T ss_pred             ----CCEEEEEEeCCCHHHHHHHHHHHH
Confidence                899999999 65555544444433

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.65  E-value=2e-08  Score=103.05  Aligned_cols=89  Identities=29%  Similarity=0.634  Sum_probs=68.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+|+|+|++|+|||||++.|.+..+....||.|+....+...+ +.+.+||++|++.++..+..++..         
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~---------  232 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN---------  232 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CCSHHHHHTT---------
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCc-EEEEEEECCCCHhHHHHHHHHhcc---------
Confidence            3566899999999999999999999877556688887777777775 999999999998887777776665         


Q ss_pred             CccceeeEEee-cCcccccCCc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~  294 (537)
                        ++++++|+| ++...+..+.
T Consensus       233 --ad~vilV~D~~~~~s~~~~~  252 (329)
T 3o47_A          233 --TQGLIFVVDSNDRERVNEAR  252 (329)
T ss_dssp             --EEEEEEEEETTCSSSHHHHH
T ss_pred             --CCEEEEEEECCchHHHHHHH
Confidence              899999999 5555544443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.64  E-value=1.6e-08  Score=92.46  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=57.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      +..+|+++|+.|||||||++.+.+..+ ..+.|+.|  +....+.+++  ...+.+||++|++.++..+..++..     
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-----   81 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG-----   81 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT-----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc-----
Confidence            346799999999999999999998765 44567777  3344555552  4789999999988776555444433     


Q ss_pred             CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304        270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                            ++++++++| ++...+..+..++
T Consensus        82 ------~d~~i~v~d~~~~~s~~~~~~~~  104 (182)
T 1ky3_A           82 ------ADCCVLVYDVTNASSFENIKSWR  104 (182)
T ss_dssp             ------CCEEEEEEETTCHHHHHTHHHHH
T ss_pred             ------CCEEEEEEECCChHHHHHHHHHH
Confidence                  899999999 5555554444433

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.64  E-value=3.3e-08  Score=93.10  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhH-HHHhhhhccccCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPL  270 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~  270 (537)
                      ..+|+|||++|||||||++.++|..+ ....|+.|  +....+.+++ .+.+.+||++|++.+.. ++..++..      
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~------   96 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT------   96 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc------
Confidence            46899999999999999999987533 12334444  3344566776 46788999999987654 45555555      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                           ++++++++| ++...+..+..++.
T Consensus        97 -----~d~~ilv~d~~~~~s~~~~~~~~~  120 (195)
T 3cbq_A           97 -----GDAFLIVFSVTDRRSFSKVPETLL  120 (195)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             -----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                 889999999 66666655555443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.63  E-value=3.1e-08  Score=88.68  Aligned_cols=86  Identities=19%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++++|+.|||||||++.+.+..+ ....++.+.. ...+.+++ .+.+.+||++|+.+++..+..++..         
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~---------   74 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---------   74 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHH---------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhcc---------
Confidence            4699999999999999999998765 3455666633 33455555 4678999999998877777777766         


Q ss_pred             CccceeeEEee-cCcccccCC
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l  293 (537)
                        ++++++++| ++...+..+
T Consensus        75 --~~~~i~v~d~~~~~~~~~~   93 (166)
T 2ce2_X           75 --GEGFLCVFAINNTKSFEDI   93 (166)
T ss_dssp             --CSEEEEEEETTCHHHHHHH
T ss_pred             --CCEEEEEEECCCHHHHHHH
Confidence              889999999 554443333

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.6e-08  Score=96.93  Aligned_cols=89  Identities=18%  Similarity=0.327  Sum_probs=62.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|+.|+|||||++.|.+..+ ..+.|+.|  +....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   85 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG-------   85 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTT-------
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhcc-------
Confidence            35799999999999999999998776 34567777  4445666765 3789999999998776555555444       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++...+..+..
T Consensus        86 ----~d~vilV~D~~~~~s~~~~~~  106 (223)
T 3cpj_B           86 ----AVGALIVYDISKSSSYENCNH  106 (223)
T ss_dssp             ----CCEEEEEEC-CCHHHHHHHHH
T ss_pred             ----CCEEEEEEeCCCHHHHHHHHH
Confidence                889999999 55554444433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.63  E-value=2.1e-08  Score=94.68  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECCcEEEEEeecCCCchh------hHHHHhh
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGNKYEVFLYDLGGSEDF------RTIWKQY  261 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g~~~i~~~D~~G~~~~------r~~~~~~  261 (537)
                      +.+.+|.+++|+|+||||||||++.|+|..+ ..+.|+.|.+..  .+.+++  .+.+||++|+...      +..++..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET--TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC--CEEEEECcCCcccccCHHHHHHHHHH
Confidence            4466899999999999999999999999853 444789995432  233332  4678999997421      1223334


Q ss_pred             hhccccCCCCCCCccceeeEEee
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ++..+|..    ...+.+++++|
T Consensus        99 ~~~~~~~~----~~~~~~~~v~d  117 (210)
T 1pui_A           99 LGEYLEKR----QSLQGLVVLMD  117 (210)
T ss_dssp             HHHHHHHC----TTEEEEEEEEE
T ss_pred             HHHHHHhh----hcccEEEEEEE
Confidence            44444432    12567778888

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.62  E-value=4.1e-08  Score=88.91  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCc-cc--cCceeeeeEEEEECC-cEEEEEeecCCCchhhH-HHHhhhhccccCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPII-SL--VPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPLG  271 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~-~~--~Pt~G~t~~~i~i~g-~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~l  271 (537)
                      .+++++|++|+|||||++.+++..+. ..  .++..+....+.+++ .+.+.+||++|+..++. .+..++..       
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-------   75 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT-------   75 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH-------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc-------
Confidence            36899999999999999999986542 12  223334555667776 57888999999987654 34444444       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++.+.+..+..++
T Consensus        76 ----~d~~i~v~d~~~~~s~~~~~~~~   98 (169)
T 3q85_A           76 ----GDAFLIVFSVTDRRSFSKVPETL   98 (169)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ----CCEEEEEEECCChHHHHHHHHHH
Confidence                789999999 6665555555444

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.62  E-value=3.6e-08  Score=93.32  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+++|+.|||||||++.+++..+ ..+.|+.+.. ...+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------  101 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ-------  101 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc-------
Confidence            567899999999999999999997655 3456666622 23344554 4677799999998877665555544       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus       102 ----~d~~i~v~d~~~~~s~~~~  120 (204)
T 4gzl_A          102 ----TDVFLICFSLVSPASFENV  120 (204)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHH
Confidence                899999999 655554443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.60  E-value=2.3e-08  Score=107.42  Aligned_cols=71  Identities=14%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHH-HHhh
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTI-WKQY  261 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~-~~~~  261 (537)
                      ...+++.+.+|++++|+|+||||||||+++|+|.    +.++.|    +|.+.+      .|+....   ..+.. .+..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl----l~~~~G----~V~l~g------~D~~r~aa~eQL~~~~~r~~  348 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ----FEQQGK----SVMLAA------GDTFRAAAVEQLQVWGQRNN  348 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH----HHHTTC----CEEEEC------CCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH----hhhcCC----eEEEec------CcccchhhHHHHHHHHHhcC
Confidence            3456788889999999999999999999999999    888888    666543      2332110   11111 2456


Q ss_pred             hhccccCCC
Q psy16304        262 LGTVSQTPL  270 (537)
Q Consensus       262 i~~v~Q~~~  270 (537)
                      +++++|...
T Consensus       349 I~vV~Q~~~  357 (503)
T 2yhs_A          349 IPVIAQHTG  357 (503)
T ss_dssp             CCEECCSTT
T ss_pred             ceEEecccC
Confidence            788888765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.60  E-value=1.1e-08  Score=93.90  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+++++|+.|+|||||++.+.+..+ ..+.||.|.... .+.+++ .+.+.+||++|+++++..+..++..       
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   79 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRG-------   79 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTT-------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccC-------
Confidence            467899999999999999999998765 445677662211 222333 3567799999998877666655554       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus        80 ----~d~~i~v~d~~~~~s~~~~   98 (182)
T 3bwd_D           80 ----ADVFILAFSLISKASYENV   98 (182)
T ss_dssp             ----CSEEEEEEETTCHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHH
Confidence                889999999 555544443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.60  E-value=3.3e-08  Score=92.11  Aligned_cols=87  Identities=20%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+++++|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|+++++..+..++..        
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--------   89 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM--------   89 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT--------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC--------
Confidence            35799999999999999999998766 45667777332 3455554 4789999999998877665555544        


Q ss_pred             CCccceeeEEee-cCcccccCC
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l  293 (537)
                         ++++++++| ++...+..+
T Consensus        90 ---~d~~i~v~d~~~~~s~~~~  108 (194)
T 2atx_A           90 ---TDVFLICFSVVNPASFQNV  108 (194)
T ss_dssp             ---CSEEEEEEETTCHHHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHHH
Confidence               899999999 655554444

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.59  E-value=1.5e-07  Score=85.74  Aligned_cols=78  Identities=26%  Similarity=0.369  Sum_probs=51.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhh------HHHHhhhhcccc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVSQ  267 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~Q  267 (537)
                      .+++|+|++|||||||++.|+|..+ ....|+.+  .....+.+++ ..+.+||++|+.+++      .+...++..   
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~---   79 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN---   79 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSHHHHHHHHHHHH---
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcchhHHHHHHHHhc---
Confidence            5799999999999999999999754 22223222  1223566665 899999999987653      222333321   


Q ss_pred             CCCCCCCccceeeEEee
Q psy16304        268 TPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~D  284 (537)
                            ..++++++++|
T Consensus        80 ------~~~~~~i~v~D   90 (165)
T 2wji_A           80 ------EKPDLVVNIVD   90 (165)
T ss_dssp             ------HCCSEEEEEEE
T ss_pred             ------CCCCEEEEEec
Confidence                  01678888999

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.58  E-value=1.1e-07  Score=90.21  Aligned_cols=79  Identities=20%  Similarity=0.325  Sum_probs=59.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC--cEEEEEeecCCCchhhH-HHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g--~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~l  271 (537)
                      +..+++|+|+.|+|||||++.+++..+....++.+.....+.+++  +..+.+||++|+..++. ++..++..       
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-------   78 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS-------   78 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG-------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhh-------
Confidence            457899999999999999999998766333344443444566663  48899999999998876 56666555       


Q ss_pred             CCCccceeeEEee
Q psy16304        272 RPDSRTCQVYLIM  284 (537)
Q Consensus       272 ~~~~~~~il~v~D  284 (537)
                          ++++++++|
T Consensus        79 ----~~~~i~v~d   87 (214)
T 2fh5_B           79 ----ARAVVFVVD   87 (214)
T ss_dssp             ----EEEEEEEEE
T ss_pred             ----CCEEEEEEE
Confidence                888999999

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.58  E-value=3.8e-08  Score=91.29  Aligned_cols=89  Identities=18%  Similarity=0.286  Sum_probs=56.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+++|+.|||||||++.|++..+ ..+.++.+.. ...+.+++ .+.+.+||++|+..+...+..++..        
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--------   92 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT--------   92 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTT--------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc--------
Confidence            36799999999999999999998765 3445666632 23455555 4679999999998776555554444        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++...+..+..
T Consensus        93 ---~d~~i~v~d~~~~~s~~~~~~  113 (190)
T 3con_A           93 ---GEGFLCVFAINNSKSFADINL  113 (190)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEECcCHHHHHHHHH
Confidence               889999999 55544443333

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.58  E-value=6.9e-08  Score=88.18  Aligned_cols=78  Identities=14%  Similarity=0.253  Sum_probs=56.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+++|++|||||||++.+.+..+. ...|+.+  +....+.+++ ..+.+||++|++.++..+..++         
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~---------   76 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRARGA---------   76 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCCSSC---------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHHHHH---------
Confidence            5788999999999999999999997652 2233332  2334567776 8899999999977664332222         


Q ss_pred             CCCccceeeEEee
Q psy16304        272 RPDSRTCQVYLIM  284 (537)
Q Consensus       272 ~~~~~~~il~v~D  284 (537)
                        ..++++++++|
T Consensus        77 --~~~d~~i~v~d   87 (178)
T 2lkc_A           77 --QVTDIVILVVA   87 (178)
T ss_dssp             --CCCCEEEEEEE
T ss_pred             --hhCCEEEEEEE
Confidence              23788999999

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.56  E-value=3.7e-08  Score=101.08  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG  238 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~  238 (537)
                      ..+|++++|+||||||||||+++|+|.    +.|+.|    +|.+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~----l~~~~g----~V~l~  163 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANW----LKNHGF----SVVIA  163 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHH----HHHTTC----CEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH----HHhcCC----EEEEE
Confidence            357999999999999999999999999    899999    55543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.55  E-value=7.2e-08  Score=91.93  Aligned_cols=88  Identities=17%  Similarity=0.294  Sum_probs=50.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+++|++|+|||||++.+.+..+ ..+.|+.+.. ...+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------  105 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD-------  105 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C-------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc-------
Confidence            346899999999999999999998765 3456776633 23455665 4689999999998877666555444       


Q ss_pred             CCCccceeeEEee-cCcccccCC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l  293 (537)
                          ++++++++| ++...+..+
T Consensus       106 ----~d~~i~v~d~~~~~s~~~~  124 (214)
T 2j1l_A          106 ----ASVLLLCFDVTSPNSFDNI  124 (214)
T ss_dssp             ----EEEEEEEEETTCHHHHHHH
T ss_pred             ----CCEEEEEEECcCHHHHHHH
Confidence                899999999 555544433

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.54  E-value=1.6e-07  Score=88.37  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+++|+.|+|||||++.+.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|+++++..+..++..        
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------   96 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD--------   96 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT--------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC--------
Confidence            46799999999999999999998766 44567777433 3456665 4689999999998877655554444        


Q ss_pred             CCccceeeEEee-cCcccccC
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSG  292 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~  292 (537)
                         ++++++++| ++...+..
T Consensus        97 ---~d~~i~v~d~~~~~s~~~  114 (201)
T 2gco_A           97 ---TDVILMCFSIDSPDSLEN  114 (201)
T ss_dssp             ---CSEEEEEEETTCHHHHHH
T ss_pred             ---CCEEEEEEECCCHHHHHH
Confidence               889999999 55544433

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.54  E-value=2.1e-08  Score=95.38  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEEC--C--cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYG--N--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~--g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ..+|+|+|++|||||||++.|++..+ ..+.++.|.+...+.+.  +  .+.+.+||++|++.++..+..++..      
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------   84 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG------   84 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT------
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc------
Confidence            46799999999999999999998765 45567777555444432  2  2789999999998776655555554      


Q ss_pred             CCCCccceeeEEee-cCcccccCCcc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                           ++++++++| ++...+..+..
T Consensus        85 -----~d~~i~v~d~~~~~s~~~~~~  105 (218)
T 4djt_A           85 -----ASGAILFFDVTSRITCQNLAR  105 (218)
T ss_dssp             -----CSEEEEEEETTCHHHHHTHHH
T ss_pred             -----CCEEEEEEeCCCHHHHHHHHH
Confidence                 889999999 55554444433

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.54  E-value=7.6e-09  Score=101.38  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=25.2

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+++|.+.+|+++||+|+||||||||+++|+|.
T Consensus        15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             --------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4456788889999999999999999999999986

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.53  E-value=1.3e-08  Score=93.48  Aligned_cols=44  Identities=20%  Similarity=0.295  Sum_probs=38.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ..+++.+.+|++++|+||||||||||+++|+|.    . |+.|    +|.++|
T Consensus        24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~----l-~~~G----~V~~~g   67 (158)
T 1htw_A           24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG----I-GHQG----NVKSPT   67 (158)
T ss_dssp             HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH----T-TCCS----CCCCCT
T ss_pred             hccccccCCCCEEEEECCCCCCHHHHHHHHHHh----C-CCCC----eEEECC
Confidence            345677889999999999999999999999999    8 9999    777765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.53  E-value=8.7e-09  Score=95.97  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEee
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYD  247 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D  247 (537)
                      ++++|+|++|||||||++.|.|.    +.|+   .|    .|.+++ ..+..+|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~----~~~~g~~~G----~I~~dg-~~i~~~~   47 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI----LRERGLRVA----VVKRHA-HGDFEID   47 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH----HHHTTCCEE----EEEC----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH----hhhcCCceE----EEEEcC-cccccCC
Confidence            57999999999999999999999    8888   88    888886 5544444

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.52  E-value=1.5e-07  Score=88.91  Aligned_cols=86  Identities=20%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+|+++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|++.++..+..++..       
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------   96 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD-------   96 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTT-------
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCC-------
Confidence            456899999999999999999998766 34557777333 3355665 4689999999998776555554444       


Q ss_pred             CCCccceeeEEee-cCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVS  291 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~  291 (537)
                          ++++++++| ++...+.
T Consensus        97 ----~d~~i~v~d~~~~~s~~  113 (207)
T 2fv8_A           97 ----TDVILMCFSVDSPDSLE  113 (207)
T ss_dssp             ----CCEEEEEEETTCHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHH
Confidence                889999999 5544433

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.50  E-value=6.1e-08  Score=111.62  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+++.+++.+.+|++++|+|||||||||||+++.+.
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            356678888889999999999999999999999764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.49  E-value=2.7e-08  Score=95.04  Aligned_cols=93  Identities=18%  Similarity=0.350  Sum_probs=67.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHH-HhCCCCccccCceeeeeEEEEE--CC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFNRARVEY--GN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~-L~G~~~~~~~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      ...+|+|+|+.|||||||++. +.|.....+.|+.|++.....+  ++ ++.+.+||++|++.++..+..++..      
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------   87 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ------   87 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc------
Confidence            346899999999999999999 4443234567888866655443  33 5789999999998777666666655      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                           ++++++++| ++...+..+..++.
T Consensus        88 -----~~~~i~v~d~~~~~s~~~~~~~~~  111 (221)
T 3gj0_A           88 -----AQCAIIMFDVTSRVTYKNVPNWHR  111 (221)
T ss_dssp             -----CCEEEEEEETTCHHHHHTHHHHHH
T ss_pred             -----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                 899999999 66555555544433

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.48  E-value=2e-07  Score=89.89  Aligned_cols=109  Identities=18%  Similarity=0.360  Sum_probs=79.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      +.++.++|..++||++++.+|..|. .....+|++..  ...+..++ ...+.+|||+|++.+..+++.|++.++++++|
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv   92 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVV   92 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEE
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEE
Confidence            4578899999999999999999887 45556777633  22332233 36788999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~  418 (537)
                      +|..++.+++.+..|+.      ..+.++.+.+|| |+..
T Consensus        93 ~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~  132 (216)
T 4dkx_A           93 YDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD  132 (216)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred             eecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence            99999999998874443      245677888888 7643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.48  E-value=4.5e-07  Score=83.87  Aligned_cols=108  Identities=30%  Similarity=0.556  Sum_probs=87.5

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|.+++||+++++.|.++....+.+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS   93 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECC-EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence            346688999999999999999999987778888887665665565 8999999999999999999999999999999999


Q ss_pred             CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++   +.    .+.++...+|| |+.
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (181)
T 1fzq_A           94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL  130 (181)
T ss_dssp             TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred             cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence            9988777655222   21    45677777777 763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.48  E-value=2.1e-07  Score=89.38  Aligned_cols=109  Identities=11%  Similarity=0.144  Sum_probs=66.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee--eeeEEEEECC-cEEEEEeecCCCch-hhHHHHhhhhccccCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTP  269 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q~~  269 (537)
                      ..+|+|||++|+|||||++.++|...  ....++.|  +....+.++| .+.+.+||++|++. .+.+...++.      
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~------  110 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ------  110 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh------
Confidence            46799999999999999999998543  22234456  3345667776 35678899999875 2222222222      


Q ss_pred             CCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        270 LGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                           .++++++++| ++...++.+..+...+....  .....++.++|
T Consensus       111 -----~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~--~~~~~piilVg  152 (211)
T 2g3y_A          111 -----VGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVG  152 (211)
T ss_dssp             -----CCSEEEEEEETTCHHHHHHHHHHHHHHHTSG--GGTTSCEEEEE
T ss_pred             -----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCcEEEEE
Confidence                 3789999999 66666555544433222211  11235566665

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.47  E-value=4.9e-08  Score=99.90  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCc----cccCceeeeeEEEEECCcEEEEEeecCCCchhhH---HHHhhhhccccCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT---IWKQYLGTVSQTPL  270 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~----~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~---~~~~~i~~v~Q~~~  270 (537)
                      +++|+|+.|+|||||++.+.+..+.    .+.||.|+....+  +..+++.+||++|+++++.   .+..++..      
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~------   72 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKS------   72 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTT------
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccC------
Confidence            5899999999999999998875432    2568888766654  4458899999999998863   34566665      


Q ss_pred             CCCCccceeeEEee-cCc
Q psy16304        271 GRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~  287 (537)
                           ++++++|+| ++.
T Consensus        73 -----a~~~IlV~Ditd~   85 (331)
T 3r7w_B           73 -----VGALVYVIDSQDE   85 (331)
T ss_dssp             -----CSEEEEECCCSSC
T ss_pred             -----CCEEEEEEECCch
Confidence                 899999999 554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.47  E-value=3.5e-07  Score=92.69  Aligned_cols=77  Identities=19%  Similarity=0.311  Sum_probs=55.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE----EEECCcEEEEEeecCCCchhh--------HHHHhhhhc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDLGGSEDFR--------TIWKQYLGT  264 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~----i~i~g~~~i~~~D~~G~~~~r--------~~~~~~i~~  264 (537)
                      -+++|+|.+|||||||++.|.|..++...+..++|+..    +..+ +..+.+|||+|+.+.+        .....++. 
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~-~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~-   85 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA-   85 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC-CcEEEEecCccccchhhHHHHHHHHHHHHHHh-
Confidence            46999999999999999999998776555555544432    2333 5899999999987532        22222222 


Q ss_pred             cccCCCCCCCccceeeEEeec
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                                .++++++++|.
T Consensus        86 ----------~ad~il~VvD~   96 (301)
T 1wf3_A           86 ----------DVNAVVWVVDL   96 (301)
T ss_dssp             ----------SCSEEEEEEET
T ss_pred             ----------cCCEEEEEEEC
Confidence                      38999999993

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.47  E-value=2.8e-07  Score=97.49  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++.+.++++.|+...+..+                  +      ...++|||+||||||||+++|+|.
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~------------------v------sf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRG------------------F------EFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             -----CCCCCCTTTTTCC-C------------------C------CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CcEEEEecceeECCEEEecC------------------C------CEEEEEECCCCCcHHHHHHHHhCC
Confidence            35788999998865443333                  1      134699999999999999999998

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.46  E-value=4.9e-07  Score=83.40  Aligned_cols=79  Identities=27%  Similarity=0.373  Sum_probs=53.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhh------HHHHhhhhccc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVS  266 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~  266 (537)
                      ..+++|+|++|||||||++.|+|..+ ....|+.+  .....+.+++ ..+.+||++|+..++      .++..++..  
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--   83 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN--   83 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSHHHHHHHHHHHH--
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccHHHHHHHHHHhc--
Confidence            46799999999999999999999643 22223222  2333666765 999999999987653      223333321  


Q ss_pred             cCCCCCCCccceeeEEee
Q psy16304        267 QTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D  284 (537)
                             ..++.+++++|
T Consensus        84 -------~~~~~~i~v~d   94 (188)
T 2wjg_A           84 -------EKPDLVVNIVD   94 (188)
T ss_dssp             -------HCCSEEEEEEE
T ss_pred             -------cCCCEEEEEec
Confidence                   11577888888

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.45  E-value=1.7e-07  Score=87.08  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEE--EECCcEEEEEeecCC----------CchhhHHHHhh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--EYGNKYEVFLYDLGG----------SEDFRTIWKQY  261 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i--~i~g~~~i~~~D~~G----------~~~~r~~~~~~  261 (537)
                      ...+++|+|+.|||||||++.|.+..+ ..+.++.|.|....  .++  ..+.+||++|          ++.++..+..+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            467899999999999999999999864 55667777555433  333  3688999999          55555555555


Q ss_pred             hhccccCCCCCCCccceeeEEee
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +...        ...+++++++|
T Consensus       100 ~~~~--------~~~~~~i~v~d  114 (195)
T 1svi_A          100 ITTR--------EELKAVVQIVD  114 (195)
T ss_dssp             HHHC--------TTEEEEEEEEE
T ss_pred             Hhhh--------hcCCEEEEEEE
Confidence            5440        11478889999

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.44  E-value=2.3e-07  Score=85.82  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC----------CchhhHHHHhhhhc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG----------SEDFRTIWKQYLGT  264 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G----------~~~~r~~~~~~i~~  264 (537)
                      ...+++|+|+.|||||||++.|.+..+....++.|++........+..+.+||++|          ...++..+..++..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~  101 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN  101 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence            45689999999999999999999987666778888665443332124678999999          44455555555544


Q ss_pred             cccCCCCCCCccceeeEEee
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D  284 (537)
                      .        ...+.+++++|
T Consensus       102 ~--------~~~~~vi~v~d  113 (195)
T 3pqc_A          102 R--------WSLQMVFLLVD  113 (195)
T ss_dssp             C--------TTEEEEEEEEE
T ss_pred             C--------cCceEEEEEec
Confidence            1        12477888888

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.44  E-value=5.2e-07  Score=80.71  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceee----eeEEEEECCcEEEEEeecCCCch-------hhHHHHhhhhccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGF----NRARVEYGNKYEVFLYDLGGSED-------FRTIWKQYLGTVS  266 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~----t~~~i~i~g~~~i~~~D~~G~~~-------~r~~~~~~i~~v~  266 (537)
                      +++++|+.|+|||||++.+.+..+....+..|+    ....+.+++ ..+.+||++|+..       .+..+...+..  
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--   79 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALED--   79 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHh--
Confidence            689999999999999999998754333333332    233555665 7999999999875       22233333333  


Q ss_pred             cCCCCCCCccceeeEEee
Q psy16304        267 QTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~D  284 (537)
                               ++++++++|
T Consensus        80 ---------~~~~i~v~d   88 (161)
T 2dyk_A           80 ---------AEVVLFAVD   88 (161)
T ss_dssp             ---------CSEEEEEEE
T ss_pred             ---------CCEEEEEEE
Confidence                     788999999

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.43  E-value=1.3e-08  Score=95.79  Aligned_cols=92  Identities=22%  Similarity=0.369  Sum_probs=63.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      -.+|+|+|+.|||||||++.|.+..+ ....|+.|  +....+.+++ .+.+.+||++|++.++..+..++..       
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------  105 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG-------  105 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc-------
Confidence            36799999999999999999999765 33456666  4445666665 3689999999987766444433333       


Q ss_pred             CCCccceeeEEee-cCcccccCCccccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                          ++++++++| ++...++.+..++.
T Consensus       106 ----~d~~i~v~d~~~~~s~~~~~~~~~  129 (199)
T 3l0i_B          106 ----AHGIIVVYDVTDQESFNNVKQWLQ  129 (199)
T ss_dssp             ----CSEEEECC-CCCSHHHHHHHHHHH
T ss_pred             ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence                899999999 66555544444443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.80  E-value=2.6e-08  Score=93.86  Aligned_cols=90  Identities=17%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      .+..+|+++|++|||||||++.+.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|+++++..+..++..      
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------  101 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ------  101 (204)
Confidence            3567899999999999999999998655 34456666221 2333333 3667799999998777665555544      


Q ss_pred             CCCCccceeeEEee-cCcccccCCc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                           ++++++++| ++...+..+.
T Consensus       102 -----~d~iilv~D~~~~~s~~~~~  121 (204)
T 3th5_A          102 -----TDVFLICFSLVSPASFENVR  121 (204)
Confidence                 888999999 6655555443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.43  E-value=1.1e-07  Score=111.09  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=29.1

Q ss_pred             ccccccccCCC-------CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        185 LPTHLSLFDFR-------SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       185 ~~~~~~l~~~~-------G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++.+++...+       |++++|+||||+||||||+++ |.
T Consensus       771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence            45566676665       899999999999999999999 87

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.42  E-value=3.1e-07  Score=85.99  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee--eeeEEEE--E--CCcEEEEEeecCCCchhhHHH---Hhhhhcc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG--FNRARVE--Y--GNKYEVFLYDLGGSEDFRTIW---KQYLGTV  265 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G--~t~~~i~--i--~g~~~i~~~D~~G~~~~r~~~---~~~i~~v  265 (537)
                      +..+++|+|++|||||||++.+.+.....  ++.|  ++...+.  +  +..+.+.+||++|+++++...   ..++.. 
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~-   95 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG-   95 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc-
Confidence            56789999999999999999999863222  3333  3322333  2  235889999999998765443   556655 


Q ss_pred             ccCCCCCCCccceeeEEee-cC
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CG  286 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~  286 (537)
                                ++++++++| ++
T Consensus        96 ----------~~~~i~v~d~~~  107 (196)
T 3llu_A           96 ----------TGALIYVIDAQD  107 (196)
T ss_dssp             ----------CSEEEEEEETTS
T ss_pred             ----------CCEEEEEEECCC
Confidence                      899999999 44

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.41  E-value=4.3e-07  Score=95.21  Aligned_cols=80  Identities=18%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEEEEECC----------------cEEEEEeecC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRARVEYGN----------------KYEVFLYDLG  249 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~i~i~g----------------~~~i~~~D~~  249 (537)
                      +..+.+++|||+||||||||++.|+|..+       ++..|..|    .+.+.+                ...+.+||++
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g----~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp   94 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNES----RVPVPDERFDFLCQYHKPASKIPAFLNVVDIA   94 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEE----EEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeE----EEEECCccceeeccccCcccccccccEEEECC
Confidence            44789999999999999999999999743       33456667    777654                1358999999


Q ss_pred             CCchhhH-------HHHhhhhccccCCCCCCCccceeeEEee-cCc
Q psy16304        250 GSEDFRT-------IWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       250 G~~~~r~-------~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~  287 (537)
                      |+.....       .+..++.           .++++++|+| ++.
T Consensus        95 Gl~~~as~~~glg~~~l~~ir-----------~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           95 GLVKGAHNGQGLGNAFLSHIS-----------ACDGIFHLTRAFED  129 (396)
T ss_dssp             C-----------CCHHHHHHH-----------TSSSEEEEEEC---
T ss_pred             CcccccchhhHHHHHHHHHHH-----------hcCeEEEEEecCCC
Confidence            9875432       1222223           2889999999 443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.41  E-value=2.1e-08  Score=103.90  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-CceeeeeEEEEEC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVGFNRARVEYG  238 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G~t~~~i~i~  238 (537)
                      +|++++|+|+||||||||+|+|+|.    .. |+.|    .+.+.
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~----~~~~~~G----~I~~~  250 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL----QNEILTN----DVSNV  250 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC----SSCCCCC---------
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc----ccccccC----Ccccc
Confidence            6899999999999999999999999    88 9999    66654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.40  E-value=6.4e-07  Score=82.91  Aligned_cols=108  Identities=22%  Similarity=0.466  Sum_probs=84.0

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   93 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS   93 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            456788999999999999999999987678888887666666566 8999999999988888899999999999999999


Q ss_pred             CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++   ..    .+.++....|| |+.
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           94 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  130 (187)
T ss_dssp             TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence            9987776655322   22    46677777777 763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.40  E-value=2.1e-07  Score=87.31  Aligned_cols=89  Identities=10%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee--eeeEEEEECC-cEEEEEeecCCCch-hhHHHHhhhhccccCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q~~~  270 (537)
                      .+++|||++|||||||++.++|...  ....++.|  +....+.++| .+.+.+||++|... .+.+...++..      
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~------   80 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV------   80 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHH------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhccc------
Confidence            5799999999999999999997432  22223455  2335567776 35677899988764 23333344444      


Q ss_pred             CCCCccceeeEEee-cCcccccCCccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                           ++++++++| ++...+..+..+
T Consensus        81 -----~~~~i~v~dv~~~~s~~~~~~~  102 (192)
T 2cjw_A           81 -----GDAYLIVYSITDRASFEKASEL  102 (192)
T ss_dssp             -----CSEEEEEEETTCHHHHHHHHHH
T ss_pred             -----CCEEEEEEECCCHHHHHHHHHH
Confidence                 788999999 666655554443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.40  E-value=4.5e-07  Score=92.01  Aligned_cols=78  Identities=24%  Similarity=0.391  Sum_probs=58.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE----EEECCcEEEEEeecCCCchhh----------HHHHhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDLGGSEDFR----------TIWKQY  261 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~----i~i~g~~~i~~~D~~G~~~~r----------~~~~~~  261 (537)
                      --+|+|+|++|||||||++.|.|..++...+..|+|+..    ...+.+..+.+|||+|+.+..          ..+...
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~   89 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS   89 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence            356999999999999999999999877666777755533    334425999999999985432          233344


Q ss_pred             hhccccCCCCCCCccceeeEEee
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +..           ++++++++|
T Consensus        90 l~~-----------aD~il~VvD  101 (308)
T 3iev_A           90 LEE-----------ADVILFMID  101 (308)
T ss_dssp             HHH-----------CSEEEEEEE
T ss_pred             hhc-----------CCEEEEEEe
Confidence            444           899999999

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.37  E-value=4e-07  Score=91.98  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ...+++++|++|+|||||++.+++..+ ..+.+|.|.. ...+.+++ .+.+.+||++|++.++..+..++..       
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------  226 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ-------  226 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT-------
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC-------
Confidence            567899999999999999999997655 4456777633 23445554 3566799999998777555555444       


Q ss_pred             CCCccceeeEEee-cCcccccC
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSG  292 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~  292 (537)
                          ++++++++| ++...+..
T Consensus       227 ----~d~~i~v~d~~~~~s~~~  244 (332)
T 2wkq_A          227 ----TDVFLICFSLVSPASFHH  244 (332)
T ss_dssp             ----CSEEEEEEETTCHHHHHH
T ss_pred             ----CCEEEEEEeCCCHHHHHH
Confidence                899999999 55554443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.37  E-value=8.1e-07  Score=88.15  Aligned_cols=78  Identities=21%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhhH------HHHhhhhcccc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRT------IWKQYLGTVSQ  267 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~------~~~~~i~~v~Q  267 (537)
                      .+|+|+|++|||||||++.|+|..+ ....|..+  .....+.+.+ ..+.+||++|+..+..      .++.++..   
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~---   79 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFILD---   79 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHHHHHHHHHHHT---
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHHHHHHHHhhhc---
Confidence            5799999999999999999999854 22223222  2223455565 8899999999876543      33343321   


Q ss_pred             CCCCCCCccceeeEEee
Q psy16304        268 TPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~D  284 (537)
                            ...+++++++|
T Consensus        80 ------~~~d~vi~v~D   90 (271)
T 3k53_A           80 ------GNADVIVDIVD   90 (271)
T ss_dssp             ------TCCSEEEEEEE
T ss_pred             ------cCCcEEEEEec
Confidence                  22788999999

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.36  E-value=3.1e-07  Score=94.44  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=44.3

Q ss_pred             cCccchhhhhcCCCceeeec--ccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCc
Q psy16304        321 AGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSG  391 (537)
Q Consensus       321 ~gKs~li~~LSgG~rqrvs~--ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~  391 (537)
                      .++...+..|||||+|++.-  .++++++++.  + |++++||  |+|++...  .++   ..+.+.+ .+++++ +|+.
T Consensus       240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~--~-p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~-~~vi~~-sH~~  314 (339)
T 3qkt_A          240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAG--E-ISLLILDEPTPYLDEERRRKLITIMERYLKKI-PQVILV-SHDE  314 (339)
T ss_dssp             TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTT--T-TCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS-SEEEEE-ESCG
T ss_pred             ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcC--C-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEE-EChH
Confidence            44566689999999996511  1255566653  3 8999999  99994332  222   3333333 356666 6776


Q ss_pred             chhhhhh
Q psy16304        392 RPDDRCQ  398 (537)
Q Consensus       392 ~~~~~~~  398 (537)
                      .....++
T Consensus       315 ~~~~~~d  321 (339)
T 3qkt_A          315 ELKDAAD  321 (339)
T ss_dssp             GGGGGCS
T ss_pred             HHHHhCC
Confidence            5444333

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.35  E-value=1.1e-06  Score=85.16  Aligned_cols=57  Identities=23%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCceeee----eEEEEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN----RARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +..+|+|+|++|||||||++.|+|..+. ...|..|+|    ...+.+++ ..+.+||++|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~   89 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIF   89 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCcc
Confidence            3467999999999999999999997552 222322322    23556665 899999999964

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.35  E-value=2.4e-07  Score=99.70  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      ..|.+|+|+|++|||||||+|.|++..+....+..|+|++    .+.++| ..+.+|||+|+.+....+.. ++  .+..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~-~g--i~~~  306 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEH-EG--IRRS  306 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC----------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHH-HH--HHHH
Confidence            3578899999999999999999999865555556665543    466665 99999999998765433322 11  0111


Q ss_pred             CCCCCccceeeEEee-cCcc
Q psy16304        270 LGRPDSRTCQVYLIM-CGVH  288 (537)
Q Consensus       270 ~l~~~~~~~il~v~D-s~~~  288 (537)
                      ..+...++.+++|+| ++..
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~  326 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTER  326 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCS
T ss_pred             HhhcccCCEEEEEEECCCCc
Confidence            223345899999999 4443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.35  E-value=8.2e-07  Score=93.14  Aligned_cols=56  Identities=18%  Similarity=0.322  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCC--------ccccCceeeeeEEEEECC----------------cEEEEEeec
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPI--------ISLVPTVGFNRARVEYGN----------------KYEVFLYDL  248 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~--------~~~~Pt~G~t~~~i~i~g----------------~~~i~~~D~  248 (537)
                      +.+|.++||||+||||||||+|+|+|...        ++..|+.|    .+.+.+                +..+.++|+
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G----~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~   92 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA----KVAVPDERFDWLCEAYKPKSRVPAFLTVFDI   92 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE----EEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee----eeeeCCcchhhhhhhcccccccCcceEEEec
Confidence            45799999999999999999999999432        34578888    888775                146789999


Q ss_pred             CCCc
Q psy16304        249 GGSE  252 (537)
Q Consensus       249 ~G~~  252 (537)
                      +|..
T Consensus        93 pGl~   96 (392)
T 1ni3_A           93 AGLT   96 (392)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            8864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.34  E-value=3.3e-07  Score=92.73  Aligned_cols=86  Identities=16%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCc-hhhHHHHhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE-DFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~-~~r~~~~~~i~~v~Q~~  269 (537)
                      ++.+++|+|++|||||||++.|.|..++...+..|+|+.    .+..+ +..+.++|++|+. .........+.   +..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-~~~i~~iDTpG~~~~~~~~l~~~~~---~~~   82 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMN---KAA   82 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHT---CCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-CeeEEEEECcCCCccchhhHHHHHH---HHH
Confidence            456899999999999999999999876544444454432    23334 4889999999987 43322222211   112


Q ss_pred             CCCCCccceeeEEee
Q psy16304        270 LGRPDSRTCQVYLIM  284 (537)
Q Consensus       270 ~l~~~~~~~il~v~D  284 (537)
                      ......++.+++++|
T Consensus        83 ~~~l~~~D~vl~Vvd   97 (301)
T 1ega_A           83 SSSIGDVELVIFVVE   97 (301)
T ss_dssp             TSCCCCEEEEEEEEE
T ss_pred             HHHHhcCCEEEEEEe
Confidence            222344677777777

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.32  E-value=1.4e-06  Score=81.37  Aligned_cols=108  Identities=27%  Similarity=0.543  Sum_probs=81.6

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|.+++||+++++.|.++......+|+++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~  106 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS  106 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CTTHHHHHHTCCEEEEEEET
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            456788999999999999999999986666777776555555455 8999999999988888899999999999999999


Q ss_pred             CCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++.   .    .+.++...+|| |+.
T Consensus       107 ~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~  143 (192)
T 2b6h_A          107 NDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP  143 (192)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence            99887776653322   2    36677777777 763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.32  E-value=9.1e-07  Score=79.46  Aligned_cols=105  Identities=30%  Similarity=0.592  Sum_probs=82.7

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSG  391 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~  391 (537)
                      .+.++|.+++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|..+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSS-CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECC-EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            467899999999999999998885555677776555555455 8999999999999999999999999999999999998


Q ss_pred             chhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304        392 RPDDRCQVYLM---S----CNCQVYLISAK-NLS  417 (537)
Q Consensus       392 ~~~~~~~i~ll---~----~G~ii~~g~nk-dl~  417 (537)
                      .+++....++.   .    .+.++...+|| |+.
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLP  114 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence            87776553322   2    36677777777 763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.31  E-value=4.9e-07  Score=85.10  Aligned_cols=107  Identities=21%  Similarity=0.383  Sum_probs=78.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ...+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|++.++.+|..+++..+++++|+|.+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~  103 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA  103 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGGCSEEEEEEETT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC-EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECC
Confidence            34678999999999999999999986667777777666666666 89999999999888888989999999999999999


Q ss_pred             Ccchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        390 SGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       390 d~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      +..+++....|+.       ..+.++...+|| |+.
T Consensus       104 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A          104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRP  139 (198)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred             CHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence            9887776653321       146777788888 763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.31  E-value=6.7e-07  Score=82.43  Aligned_cols=108  Identities=22%  Similarity=0.456  Sum_probs=87.0

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|.
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   98 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS   98 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETT-EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEET
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            345688999999999999999999998778888887666665566 8999999999988888888999999999999999


Q ss_pred             CCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++   +    ..+.++....|| |+.
T Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           99 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  135 (181)
T ss_dssp             TCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence            9987777655222   2    256677777777 763

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.29  E-value=1.1e-06  Score=93.67  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~  254 (537)
                      ..+++|+|+||||||||++.|+|..+....+..|+|++    .+.++| ..+.+||++|+.+.
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-~~~~l~Dt~G~~~~  241 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLRRK  241 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EEEEESSCSCC---
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-EEEEEEECCCCccc
Confidence            46899999999999999999999866545555554442    677776 78999999998543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.28  E-value=1.8e-06  Score=85.20  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhhH----------HHHhhhhc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRT----------IWKQYLGT  264 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~----------~~~~~i~~  264 (537)
                      +|+|+|.+|||||||++.|+|... ....|..+  .....+.+++ ..+.+||++|+..+..          +.+.++..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            689999999999999999999753 11122211  2223556665 8999999999876542          33333311


Q ss_pred             cccCCCCCCCccceeeEEee-cCc
Q psy16304        265 VSQTPLGRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~D-s~~  287 (537)
                               ...+++++++| ++.
T Consensus        82 ---------~~~d~vi~VvDas~~   96 (256)
T 3iby_A           82 ---------LEYDCIINVIDACHL   96 (256)
T ss_dssp             ---------SCCSEEEEEEEGGGH
T ss_pred             ---------CCCCEEEEEeeCCCc
Confidence                     12889999999 443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.27  E-value=1.2e-06  Score=80.82  Aligned_cols=108  Identities=31%  Similarity=0.642  Sum_probs=86.1

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+.....|..+++..+++++|+|.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   95 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence            356688999999999999999999986666777776665565565 8999999999998888888889999999999999


Q ss_pred             CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++   +.    .+.++....|| |+.
T Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (186)
T 1ksh_A           96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP  132 (186)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence            9988776655222   22    46677777777 763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.26  E-value=7.8e-07  Score=82.72  Aligned_cols=107  Identities=23%  Similarity=0.460  Sum_probs=83.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceee--ecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv--s~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ...+.++|..++||+++++.|.++....+  .+|.++....+.... ..+.+|||+|.+.+..+|..+++..+++++|+|
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   95 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGR-VAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD   95 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            45678999999999999999999995544  788887666665455 899999999999988899999999999999999


Q ss_pred             CCCcchhhhhhhhh---hcC-----------CcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---MSC-----------NCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l~~-----------G~ii~~g~nk-dl~  417 (537)
                      ..+..++..+..|+   +..           +.++...+|| |+.
T Consensus        96 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  140 (199)
T 4bas_A           96 SSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA  140 (199)
T ss_dssp             TTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred             CCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence            99998877665332   222           6677777777 764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.26  E-value=3.3e-07  Score=99.85  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..+.+|++++|+|+||+|||||++.++|.    ..+. |
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~----~~~~-G  309 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVEN----ACAN-K  309 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHH----HHTT-T
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHH----HHhC-C
Confidence            35678999999999999999999999998    6664 5

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.24  E-value=9.2e-07  Score=79.88  Aligned_cols=107  Identities=28%  Similarity=0.534  Sum_probs=84.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ...+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|..
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   85 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   85 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECC-EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence            35678999999999999999998886666677776655555565 89999999999888888888999999999999999


Q ss_pred             Ccchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        390 SGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       390 d~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      +..++.....++   +.    .+.++....|| |+.
T Consensus        86 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  121 (171)
T 1upt_A           86 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDME  121 (171)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence            987776655222   22    46777777777 763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.23  E-value=3.8e-07  Score=86.63  Aligned_cols=85  Identities=18%  Similarity=0.280  Sum_probs=58.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCcc----ccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~----~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+++|+|++|+|||||++.|.+..+..    +.|+.+...      .+..+.+||++|++.++..+..++....    
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~----   80 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------DGSGVTLVDFPGHVKLRYKLSDYLKTRA----   80 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------GGSSCEEEECCCCGGGTHHHHHHHHHHG----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------eCceEEEEECCCcHHHHHHHHHHHHhcc----
Confidence            45789999999999999999999875422    334444111      2467899999999988776666553211    


Q ss_pred             CCCCccceeeEEee-c-CcccccC
Q psy16304        271 GRPDSRTCQVYLIM-C-GVHQVSG  292 (537)
Q Consensus       271 l~~~~~~~il~v~D-s-~~~~~~~  292 (537)
                         ..++++++++| + +...+..
T Consensus        81 ---~~~~~~i~v~D~~~~~~~~~~  101 (218)
T 1nrj_B           81 ---KFVKGLIFMVDSTVDPKKLTT  101 (218)
T ss_dssp             ---GGEEEEEEEEETTSCTTCCHH
T ss_pred             ---ccCCEEEEEEECCCChHHHHH
Confidence               12578899999 5 4444433

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.23  E-value=1.9e-06  Score=79.98  Aligned_cols=108  Identities=25%  Similarity=0.527  Sum_probs=83.5

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCc-eeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ....+.++|..++||+++++.|.++.. ....+|.+.....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   99 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD   99 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence            345688999999999999999998874 355666665555454455 899999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      ..+...++....++   +.    .+.++....|| |+.
T Consensus       100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  137 (188)
T 1zd9_A          100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP  137 (188)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence            99988777655222   22    45667777777 763

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.23  E-value=1.5e-06  Score=86.66  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee--EEEEECCcEEEEEeecCCCchhh------HHHHhhhhcccc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR--ARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVSQ  267 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~--~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~Q  267 (537)
                      ..+|+|+|++|||||||++.|+|.... .....|+|.  ....+..+..+.+||++|+..+.      .+++.++..   
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~---   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS---   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc---
Confidence            357999999999999999999996421 222335443  23333323678999999987654      233444321   


Q ss_pred             CCCCCCCccceeeEEee-cCc
Q psy16304        268 TPLGRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~D-s~~  287 (537)
                            ...+++++++| ++.
T Consensus        79 ------~~~d~vi~V~D~t~~   93 (272)
T 3b1v_A           79 ------QRADSILNVVDATNL   93 (272)
T ss_dssp             ------TCCSEEEEEEEGGGH
T ss_pred             ------CCCCEEEEEecCCch
Confidence                  12788999999 443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.21  E-value=3.7e-07  Score=91.60  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ++.+.+|+.++|+|+||+|||||++.|+|.    ..|+.|
T Consensus        29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~----~~~~~G   64 (296)
T 1cr0_A           29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQ----WGTAMG   64 (296)
T ss_dssp             HCSBCTTCEEEEEESTTSSHHHHHHHHHHH----HHHTSC
T ss_pred             hcCCCCCeEEEEEeCCCCCHHHHHHHHHHH----HHHHcC
Confidence            355779999999999999999999999998    777766

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.20  E-value=9.1e-07  Score=82.07  Aligned_cols=107  Identities=23%  Similarity=0.473  Sum_probs=84.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCC--ceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP--IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~--rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ...+.++|..++||+++++.|.++.  .....+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   99 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID   99 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS-CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence            4568899999999999999999987  4556677776666666565 899999999998888888899999999999999


Q ss_pred             CCCcchhhhhhhhh---hc------CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---MS------CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l~------~G~ii~~g~nk-dl~  417 (537)
                      ..+..++.....++   ..      .+.++....|| |+.
T Consensus       100 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A          100 SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence            99987776655222   21      35667777777 763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.7e-07  Score=87.14  Aligned_cols=85  Identities=19%  Similarity=0.321  Sum_probs=54.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCcc----ccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~----~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+++++|++|||||||++.|++..+..    ..|+.+     ..+. +..+.+||++|+..++..+..++....    
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~----  116 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYD-GSGVTLVDFPGHVKLRYKLSDYLKTRA----  116 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCC-CTTCSEEEETTCCBSSCCHHHHHHHHG----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeec-CCeEEEEECCCCchHHHHHHHHHHhhc----
Confidence            45689999999999999999999875421    223332     1112 367889999999877655555443211    


Q ss_pred             CCCCccceeeEEee-c-CcccccC
Q psy16304        271 GRPDSRTCQVYLIM-C-GVHQVSG  292 (537)
Q Consensus       271 l~~~~~~~il~v~D-s-~~~~~~~  292 (537)
                         ..++++++++| + +...+..
T Consensus       117 ---~~~~~~i~v~d~~~~~~~~~~  137 (193)
T 2ged_A          117 ---KFVKGLIFMVDSTVDPKKLTT  137 (193)
T ss_dssp             ---GGEEEEEEEEETTCCHHHHHH
T ss_pred             ---ccCCEEEEEEECCCCchhHHH
Confidence               12688999999 4 4444333

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.19  E-value=3.6e-06  Score=87.54  Aligned_cols=56  Identities=27%  Similarity=0.429  Sum_probs=38.9

Q ss_pred             CCCe-EEEEeCCCCcHHHHHHHHhCCCCc---cccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        195 RSVP-ILVLGLDNAGKSSIIKRILGEPII---SLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       195 ~G~~-vgLVG~NGAGKSTLL~~L~G~~~~---~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                      .|.+ ++|+|++|||||||+|.|+|..+.   ...+|.+++...+.++| ..+.+||++|+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~  236 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGF  236 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCB
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCc
Confidence            4566 999999999999999999997531   01122222333889987 89999999997

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.18  E-value=3.5e-06  Score=83.16  Aligned_cols=88  Identities=20%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +..+|+|+|..|+|||||++.|+|..+....+..|    .....+.+++ ..+.+||++|+.++......++..+.+.  
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~liDTpG~~~~~~~~~~~~~~i~~~--  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEAGYVNHQALELIKGF--  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-EEEEEEECCCSEETTEECHHHHHHHHHH--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-eeEEEEECCCCCCcccchHHHHHHHHHH--
Confidence            34679999999999999999999986543334333    2233455665 8999999999976543222222211110  


Q ss_pred             CCCCccceeeEEeec
Q psy16304        271 GRPDSRTCQVYLIMC  285 (537)
Q Consensus       271 l~~~~~~~il~v~Ds  285 (537)
                      +.....++++++++.
T Consensus       112 l~~~~~~~il~V~~~  126 (262)
T 3def_A          112 LVNRTIDVLLYVDRL  126 (262)
T ss_dssp             TTTCEECEEEEEEES
T ss_pred             HhcCCCCEEEEEEcC
Confidence            011236788888773

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.18  E-value=1.2e-06  Score=81.74  Aligned_cols=107  Identities=25%  Similarity=0.449  Sum_probs=85.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ...+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+..+.+|..+++..+++++|+|.+
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  101 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA  101 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT-EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC-EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC
Confidence            45678999999999999999999886667777777666666676 89999999999888888888889999999999999


Q ss_pred             Ccchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        390 SGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       390 d~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      +..+++....++   +    ..+.++...+|| |+.
T Consensus       102 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B          102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAP  137 (190)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             ChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence            998777655222   1    146677777887 763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.17  E-value=6.2e-06  Score=79.11  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=40.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +..+|+|+|++|||||||++.|++..+. ..+..+    +....+.+.+ ..+.+||++|+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~   87 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLL   87 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETT-EEEEEEECTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCC-CeEEEEECCCCc
Confidence            4578999999999999999999998653 222233    2223344454 899999999983

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.16  E-value=2.6e-06  Score=84.88  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhH----------HHHhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRT----------IWKQY  261 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~----------~~~~~  261 (537)
                      ..+|+|+|.+|||||||++.|+|..+ ......|+|.+    .+.+.+ ..+.+||++|+..+..          .++.+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            35799999999999999999999853 12223343332    344444 7889999999876541          12222


Q ss_pred             hhccccCCCCCCCccceeeEEee-cC
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM-CG  286 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D-s~  286 (537)
                      +.         ...++++++++| +.
T Consensus        81 ~~---------~~~~d~ii~VvD~~~   97 (274)
T 3i8s_A           81 IL---------SGDADLLINVVDASN   97 (274)
T ss_dssp             HH---------HTCCSEEEEEEEGGG
T ss_pred             Hh---------hcCCCEEEEEecCCC
Confidence            21         122789999999 44

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.16  E-value=3.1e-06  Score=83.67  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=53.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhH------HHHhhhhcc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRT------IWKQYLGTV  265 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~------~~~~~i~~v  265 (537)
                      ..+++|+|.+|+|||||++.|+|..+. .....|+|.    ..+...+ ..+.+||++|+..+..      +.+.++.. 
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-   81 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSIDEKIARDYLLK-   81 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHHHHHHHHHHHH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHHHHHHHHHHhh-
Confidence            357999999999999999999997542 111223332    2344444 8999999999876542      22333321 


Q ss_pred             ccCCCCCCCccceeeEEee-cCc
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~~  287 (537)
                              ...+++++++| ++.
T Consensus        82 --------~~~d~ii~V~D~t~~   96 (258)
T 3a1s_A           82 --------GDADLVILVADSVNP   96 (258)
T ss_dssp             --------SCCSEEEEEEETTSC
T ss_pred             --------cCCCEEEEEeCCCch
Confidence                    12788999999 443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.15  E-value=1.7e-06  Score=82.24  Aligned_cols=82  Identities=22%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC-CccccCceeeeeEE--EEEC--CcEEEEEeecCCCc----------hhhHHHH
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYG--NKYEVFLYDLGGSE----------DFRTIWK  259 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-~~~~~Pt~G~t~~~--i~i~--g~~~i~~~D~~G~~----------~~r~~~~  259 (537)
                      ...+|+|+|+.|||||||++.|+|.. .+...++.|++...  ..+.  ++..+.+||++|..          .++..+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            45789999999999999999999986 34555666654432  2222  24789999999953          3343444


Q ss_pred             hhhhccccCCCCCCCccceeeEEee
Q psy16304        260 QYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       260 ~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      .++..        ....+.+++++|
T Consensus       108 ~~~~~--------~~~~d~vi~v~d  124 (223)
T 4dhe_A          108 SYLQT--------RPQLCGMILMMD  124 (223)
T ss_dssp             HHHHH--------CTTEEEEEEEEE
T ss_pred             HHHhc--------CcCcCEEEEEEe
Confidence            44433        112566888888

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.15  E-value=1.2e-06  Score=80.35  Aligned_cols=108  Identities=27%  Similarity=0.532  Sum_probs=82.1

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS   95 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            356788999999999999999999988778888887666665565 8999999999987777788888888999999999


Q ss_pred             CCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      .+..+++....++   .    ..+.++....|| |+.
T Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (183)
T 1moz_A           96 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP  132 (183)
T ss_dssp             TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence            8887776555222   2    245677777777 763

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.15  E-value=7e-06  Score=80.48  Aligned_cols=91  Identities=16%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC--ccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI--ISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      +..+|+|+|++|||||||++.|.|...  ....|+   .......+.+++ ..+.+||++|+.+...........+....
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999763  222232   222223555665 89999999998643211111000000000


Q ss_pred             CCCCCccceeeEEeecC
Q psy16304        270 LGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~  286 (537)
                      ......++++++|+|..
T Consensus       100 ~~~~~~~d~il~V~d~~  116 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLG  116 (260)
T ss_dssp             HHHTTCCSEEEEEEETT
T ss_pred             HhcCCCCcEEEEEEeCC
Confidence            00012278999999943

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.14  E-value=2.9e-06  Score=87.97  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEEEEECCc----------------EEEEEeecCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRARVEYGNK----------------YEVFLYDLGGSE  252 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~i~i~g~----------------~~i~~~D~~G~~  252 (537)
                      |.+++|||.+|||||||++.|++..+       ++..|+.|    .+.+++.                ..+.+||++|+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g----~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~   77 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG----VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS----EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE----EEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence            46899999999999999999998542       34567777    7777652                579999999987


Q ss_pred             hhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        253 DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       253 ~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +..... +.++..+   ......++++++|+|
T Consensus        78 ~~a~~~-~gl~~~f---l~~ir~ad~il~VvD  105 (363)
T 1jal_A           78 AGASKG-EGLGNKF---LANIRETDAIGHVVR  105 (363)
T ss_dssp             TTHHHH-GGGTCCH---HHHHHTCSEEEEEEE
T ss_pred             cccccc-chHHHHH---HHHHHhcCeEEEEEe
Confidence            653210 1111100   000123889999999

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.13  E-value=4.4e-07  Score=87.71  Aligned_cols=33  Identities=27%  Similarity=0.191  Sum_probs=28.1

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--cee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G  229 (537)
                      ..+|+.++|+||||||||||+++|+|.    ..|  ..|
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~----~~p~~~~g   47 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKT----QPLYDTQV   47 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH----SCTTTEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcc----CCCCceEE
Confidence            448999999999999999999999998    665  566

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.13  E-value=1.2e-06  Score=81.10  Aligned_cols=108  Identities=31%  Similarity=0.541  Sum_probs=85.1

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+.....|..+++..+++++|+|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   99 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS   99 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETT-EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECC-EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence            456788999999999999999999987667778776655555565 8999999999987777788888899999999999


Q ss_pred             CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      .+..++.....++   +.    .+.++....|| |+.
T Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  136 (189)
T 2x77_A          100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP  136 (189)
T ss_dssp             TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence            9987776655222   22    36777777777 763

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.12  E-value=1.3e-06  Score=90.62  Aligned_cols=33  Identities=30%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..+|..++|+||||||||||+++|+|.    +.|+.|
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~----~~~~~~  152 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDY----LNNTKY  152 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHH----HHHHCC
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhc----ccCCCC
Confidence            457789999999999999999999998    888744

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.12  E-value=3.8e-07  Score=103.38  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-Ccee
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVG  229 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G  229 (537)
                      +++.+++.   |++++|+||||||||||+++++|.    .. +..|
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl----~~~~~~G  606 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALI----ALLAQVG  606 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH----HHHHTTT
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhh----hhhcccC
Confidence            34455555   999999999999999999999997    53 5666

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.10  E-value=1e-06  Score=90.71  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=33.7

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +++.+.+|++++|+|+||||||||+++|+|.    ..|+.|
T Consensus        48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~----~~~~~g   84 (337)
T 2qm8_A           48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSL----LTAAGH   84 (337)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHHHH----HHHTTC
T ss_pred             CCcccCCCeEEEEECCCCCCHHHHHHHHHHh----hhhCCC
Confidence            4566779999999999999999999999998    888888

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=1.9e-07  Score=95.23  Aligned_cols=39  Identities=28%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC----CccccCceeeeeEEEEECC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP----IISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~----~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ++++|+|+||||||||++.|.|..    .+.+.|+.|    ++.++|
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G----~i~idg   47 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG----EVSVDD   47 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCC----SCCEEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCc----ccCccH
Confidence            578999999999999999999872    122378888    555553

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.10  E-value=2.7e-06  Score=96.98  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++.+++. .+|++++|+||||||||||+++++|.
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            45566777 78999999999999999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.09  E-value=2.6e-06  Score=84.46  Aligned_cols=86  Identities=22%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+++++|..|+|||||++.|+|..+....++.|++.+    .+... +..+.+||++|+.++.......+..+..  .+
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~--~~  115 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKS--FL  115 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHH--HT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHH--Hh
Confidence            45799999999999999999999866444455554332    23334 4899999999987543211111111000  01


Q ss_pred             CCCccceeeEEee
Q psy16304        272 RPDSRTCQVYLIM  284 (537)
Q Consensus       272 ~~~~~~~il~v~D  284 (537)
                      ....++++++++|
T Consensus       116 ~~~~~d~il~v~~  128 (270)
T 1h65_A          116 LDKTIDVLLYVDR  128 (270)
T ss_dssp             TTCEECEEEEEEE
T ss_pred             hcCCCCEEEEEEe
Confidence            1123778888877

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.08  E-value=8.5e-07  Score=84.58  Aligned_cols=33  Identities=12%  Similarity=0.043  Sum_probs=28.8

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.+|+.++|+|+||||||||++.|++.    ..+..|
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~----~~~~~~   52 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAK----GLRDGD   52 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHH----HHHHTC
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHH----HHHCCC
Confidence            448999999999999999999999987    666655

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.08  E-value=8.3e-07  Score=88.62  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=24.5

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++...+|  ++|+||||+|||||+++|+|.
T Consensus        40 ~l~~~~G--vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           40 GLVTPAG--VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             TCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred             CCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence            3455567  999999999999999999997

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.07  E-value=1.4e-06  Score=95.05  Aligned_cols=79  Identities=22%  Similarity=0.403  Sum_probs=54.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEE--------EECC---cEEEEEeecCCCchhhHHHHhhh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--------EYGN---KYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i--------~i~g---~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ...+|+|+|.+|||||||++.+++..+ ..+.||.|.+..+.        .+++   +..+.+||++|++.++.....++
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l  119 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM  119 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence            457899999999999999999999866 45668888554433        2222   58899999999987776655555


Q ss_pred             hccccCCCCCCCccceeeEEee
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ..           ++++++|+|
T Consensus       120 ~~-----------~d~ii~V~D  130 (535)
T 3dpu_A          120 TR-----------SSVYMLLLD  130 (535)
T ss_dssp             HS-----------SEEEEEEEC
T ss_pred             cC-----------CcEEEEEEe
Confidence            54           889999999

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.06  E-value=3.6e-06  Score=89.42  Aligned_cols=77  Identities=21%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCC----------chhhHHHH-h
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGS----------EDFRTIWK-Q  260 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~----------~~~r~~~~-~  260 (537)
                      ..+++|+|.+|+|||||++.|+|..+....+..|+|++    .+.++| ..+.+||++|+          +.+..... .
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            35899999999999999999999876555566666654    455665 78999999997          33322211 2


Q ss_pred             hhhccccCCCCCCCccceeeEEee
Q psy16304        261 YLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       261 ~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      .+..           ++++++++|
T Consensus       254 ~~~~-----------ad~~llv~D  266 (436)
T 2hjg_A          254 AIDR-----------SEVVAVVLD  266 (436)
T ss_dssp             HHHH-----------CSEEEEEEE
T ss_pred             HHHh-----------CCEEEEEEc
Confidence            3333           788999999

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.05  E-value=2.3e-06  Score=92.24  Aligned_cols=81  Identities=17%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCc-hhhH--------HHHhh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSE-DFRT--------IWKQY  261 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~-~~r~--------~~~~~  261 (537)
                      .|.+|+|+|++|||||||+|.|++.++....+..|+|+    ..+.++| ..+.+||++|+. +...        ....+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            56889999999999999999999976544444444333    4677775 999999999987 4321        11233


Q ss_pred             hhccccCCCCCCCccceeeEEee-cCc
Q psy16304        262 LGTVSQTPLGRPDSRTCQVYLIM-CGV  287 (537)
Q Consensus       262 i~~v~Q~~~l~~~~~~~il~v~D-s~~  287 (537)
                      +..           ++.+++++| ++.
T Consensus       321 ~~~-----------aD~vl~VvD~s~~  336 (482)
T 1xzp_A          321 IEK-----------ADIVLFVLDASSP  336 (482)
T ss_dssp             HHH-----------CSEEEEEEETTSC
T ss_pred             hhc-----------ccEEEEEecCCCC
Confidence            444           899999999 443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.04  E-value=1.1e-06  Score=91.19  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=39.9

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ..+++.+.+|+.++|+|+||||||||+++|.|.    +.|+.|    .+.++|
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~----~~~~~g----~I~ie~  210 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE----IPFDQR----LITIED  210 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT----SCTTSC----EEEEES
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc----CCCCce----EEEECC
Confidence            456777889999999999999999999999999    999999    777654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.03  E-value=1.2e-06  Score=84.53  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHh-CC
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRIL-GE  219 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~-G~  219 (537)
                      .+++.+.+|++++|+||||||||||+++|+ |.
T Consensus        19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            456778899999999999999999999999 98

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.02  E-value=1.4e-05  Score=75.04  Aligned_cols=108  Identities=20%  Similarity=0.313  Sum_probs=75.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....+|++..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  108 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA  108 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence            3567899999999999999999887 33444554422  23333333 25888999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++...+|| |+.
T Consensus       109 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  147 (201)
T 2hup_A          109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS  147 (201)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence            99998888776653332      145667777777 763

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.01  E-value=9.1e-06  Score=74.68  Aligned_cols=50  Identities=28%  Similarity=0.446  Sum_probs=36.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G  250 (537)
                      +++++|++|||||||++.+.+..+ ....|+..+....+.+.   .+.+||++|
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G   53 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK---NHKIIDMPG   53 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET---TEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC---CEEEEECCC
Confidence            689999999999999999999865 23344333333344443   578999999

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.01  E-value=1.3e-05  Score=71.92  Aligned_cols=107  Identities=14%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccc-eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a-ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ..+.++|.+++||+++++.|.+.......++.+.... .+..++ ...+.+|||+|.+....++..+++..+++++|+|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   82 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   82 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEET
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEEC
Confidence            4577999999999999999998876666555554332 122232 36788999999998888999999999999999999


Q ss_pred             CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      .+..+++.+..|+   ..    .+.++...+|| |+.
T Consensus        83 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  119 (166)
T 3q72_A           83 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  119 (166)
T ss_dssp             TCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence            9988877666332   22    35667777777 763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.01  E-value=1.7e-06  Score=89.37  Aligned_cols=34  Identities=15%  Similarity=-0.009  Sum_probs=29.8

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCce
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTV  228 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~  228 (537)
                      ..+.+|.+++|+|+||||||||++.+++.    .  .|+.
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~----~~~~~~~  161 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVM----VQLPPEE  161 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHH----TTSCGGG
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH----hccchhc
Confidence            45668999999999999999999999997    5  5666

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.00  E-value=9.6e-07  Score=94.88  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ...+++.+.+ ++++|+||||||||||+++|+|.    ..|+.|    +|.++|
T Consensus        20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~I~~~g   64 (483)
T 3euj_A           20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA----LIPDLT----LLNFRN   64 (483)
T ss_dssp             EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH----HCCCTT----TCCCCC
T ss_pred             ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC----CCCCCC----EEEECC
Confidence            3456777888 99999999999999999999999    999999    777776

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.99  E-value=3.2e-06  Score=90.63  Aligned_cols=87  Identities=16%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      ..|.+|+|+|++|||||||+|.|+|..+....+..|+|+    ..+.++| ..+.+|||+|+.+....+.. ++  .+..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~v~liDT~G~~~~~~~ve~-~g--i~~~  297 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-IPVQVLDTAGIRETSDQVEK-IG--VERS  297 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-EEEEECC----------------------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-EEEEEEECCccccchhHHHH-HH--HHHH
Confidence            357889999999999999999999865433333344333    4567776 99999999998654432222 11  0111


Q ss_pred             CCCCCccceeeEEee
Q psy16304        270 LGRPDSRTCQVYLIM  284 (537)
Q Consensus       270 ~l~~~~~~~il~v~D  284 (537)
                      ......++.+++++|
T Consensus       298 ~~~~~~aD~vl~VvD  312 (462)
T 3geh_A          298 RQAANTADLVLLTID  312 (462)
T ss_dssp             -CCCCSCSEEEEEEE
T ss_pred             hhhhhcCCEEEEEec
Confidence            122344889999999

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.99  E-value=2.4e-06  Score=80.26  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...+|++++|+||||||||||+++|+|.
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3558999999999999999999999997

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.98  E-value=7.2e-06  Score=83.93  Aligned_cols=108  Identities=29%  Similarity=0.589  Sum_probs=81.7

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ....+.++|..++||+++++.|.++......+|++.....+..++ ..+.+|||+|.+.+..++..+++..+++++|+|.
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~  242 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS  242 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCc-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            345688999999999999999999986655677776666665555 8999999999988888899999999999999999


Q ss_pred             CCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~  417 (537)
                      ++...+..+..++.   .    .+.++...+|| |+.
T Consensus       243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~  279 (329)
T 3o47_A          243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP  279 (329)
T ss_dssp             TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence            99888876653222   1    36677777887 763

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.97  E-value=2e-06  Score=88.66  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=54.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCch----hhHHHHhhhhcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED----FRTIWKQYLGTV  265 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~----~r~~~~~~i~~v  265 (537)
                      ..|+|||.+|||||||++.|++..       +.+..|+.|    .+.++++..+.+||++|+..    .+.+...++.. 
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g----~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~-  233 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG----MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH-  233 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE----EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH-
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE----EEEeCCCceEEEecCCCCcccccccchhHHHHHHH-
Confidence            469999999999999999999754       344566777    78887658899999998643    11122222221 


Q ss_pred             ccCCCCCCCccceeeEEee-cC
Q psy16304        266 SQTPLGRPDSRTCQVYLIM-CG  286 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D-s~  286 (537)
                             ...++.+++++| ++
T Consensus       234 -------i~~~d~ll~VvD~s~  248 (342)
T 1lnz_A          234 -------IERTRVIVHVIDMSG  248 (342)
T ss_dssp             -------HHHCCEEEEEEESSC
T ss_pred             -------HHhccEEEEEEECCc
Confidence                   012788999999 44

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.97  E-value=7.5e-06  Score=85.35  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=53.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhH----HHHhhhhcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT----IWKQYLGTV  265 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~----~~~~~i~~v  265 (537)
                      ..|||||.++||||||||.|+|..       |++..|..|    .+.+.+ ..+.++|++|..+...    ...+.+.. 
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g----~~~~~~-~~i~l~D~pGl~~~a~~~~~~g~~~l~~-  146 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPG----VIRYKG-AKIQMLDLPGIIDGAKDGRGRGKQVIAV-  146 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEE----EEEETT-EEEEEEECGGGCCC-----CHHHHHHHH-
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeE----EEEeCC-cEEEEEeCCCccCCchhhhHHHHHHHHH-
Confidence            479999999999999999999854       334456666    788886 9999999999753211    11122211 


Q ss_pred             ccCCCCCCCccceeeEEee
Q psy16304        266 SQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~D  284 (537)
                             ...++.+++++|
T Consensus       147 -------i~~ad~il~vvD  158 (376)
T 4a9a_A          147 -------ARTCNLLFIILD  158 (376)
T ss_dssp             -------HHHCSEEEEEEE
T ss_pred             -------HHhcCccccccc
Confidence                   123889999999

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.96  E-value=1.7e-06  Score=85.89  Aligned_cols=39  Identities=23%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-eeeeeEEEEECC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-VGFNRARVEYGN  239 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-~G~t~~~i~i~g  239 (537)
                      +.+|+.++|+||||||||||+++|+|.    +.|+ .|    .|.+.+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~----~~~~~~G----~I~~~g   61 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDY----INQTKSY----HIITIE   61 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHH----HHHHCCC----EEEEEE
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHh----CCCCCCC----EEEEcC
Confidence            568999999999999999999999999    8888 88    665543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.96  E-value=2.5e-05  Score=73.77  Aligned_cols=108  Identities=25%  Similarity=0.367  Sum_probs=79.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-----------ceEEEEEecCchhhHHHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQY  375 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-----------~p~lllLDT~Gl~~~~~l~~~~  375 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+...  ..+..++           ...+.+|||+|.+.+...|..+
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            3567899999999999999999887 334444444321  1222121           1578999999999999999999


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      ++..+++++|+|..+..+++.+..|+..       .+.++....|| |+.
T Consensus       105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~  154 (217)
T 2f7s_A          105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP  154 (217)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence            9999999999999998887766644322       45667777777 764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.96  E-value=6.2e-06  Score=76.63  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      +.+|+.++|+|+||||||||+++|+|.      ++.|    .+.+++
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~------~~~g----~i~i~~   42 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL------PGVP----KVHFHS   42 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC------SSSC----EEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc------cCCC----eEEEcc
Confidence            457999999999999999999999996      5567    666664

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.95  E-value=1.4e-05  Score=74.10  Aligned_cols=108  Identities=23%  Similarity=0.349  Sum_probs=80.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+....  .+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM  102 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence            4568899999999999999999887 3344444443322  222121 27899999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhhhc------CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+..      .+.++...+|| |+.
T Consensus       103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A          103 YDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME  141 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            999998887766633321      46677777777 763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.94  E-value=2.1e-05  Score=70.47  Aligned_cols=108  Identities=21%  Similarity=0.329  Sum_probs=78.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++. .....++.+...  ..+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~   83 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVY   83 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEE
Confidence            357799999999999999999887 333444544322  2222232 257899999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~  418 (537)
                      |..+..+++....|+.      ..+.++....|| |+..
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  122 (170)
T 1ek0_A           84 DVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ  122 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             ecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence            9999877766653321      246677777777 7743

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.93  E-value=1.5e-05  Score=85.18  Aligned_cols=79  Identities=20%  Similarity=0.389  Sum_probs=55.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCC----------CchhhHHHH-
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGG----------SEDFRTIWK-  259 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G----------~~~~r~~~~-  259 (537)
                      ...+++++|.+|+|||||++.|.|.......+..|+|++    .+.+++ ..+.+||++|          ++.+..... 
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-EEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-ceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            467899999999999999999999865445566665543    566665 8999999999          455543322 


Q ss_pred             hhhhccccCCCCCCCccceeeEEeec
Q psy16304        260 QYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       260 ~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      .++..           ++++++++|+
T Consensus       273 ~~~~~-----------ad~~llviD~  287 (456)
T 4dcu_A          273 KAIDR-----------SEVVAVVLDG  287 (456)
T ss_dssp             HHHHH-----------CSEEEEEEET
T ss_pred             HHHhh-----------CCEEEEEEeC
Confidence            23444           7889999993

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.93  E-value=3.5e-05  Score=71.63  Aligned_cols=108  Identities=21%  Similarity=0.393  Sum_probs=75.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV  105 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV  105 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            35678999999999999999998873 3334444422  22232232 25789999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhh--h----cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYL--M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~l--l----~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+  +    ..+.++....|| |+.
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~  144 (192)
T 2il1_A          106 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE  144 (192)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            9999988877665332  1    236677777777 763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.89  E-value=2.9e-06  Score=80.68  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC---ceeeeeEEEEECC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---TVGFNRARVEYGN  239 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---t~G~t~~~i~i~g  239 (537)
                      .+|++++|+|+||||||||+++|+|.    +.|   +.|    .+..++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~----~~~~g~~~g----~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA----LSAQGLPAE----VVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH----HHHTTCCEE----EEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH----HhhcCCceE----EEecCC
Confidence            47999999999999999999999998    775   356    666554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.89  E-value=3.5e-05  Score=69.73  Aligned_cols=108  Identities=20%  Similarity=0.352  Sum_probs=79.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+..  ...+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence            3567899999999999999999887 33344444432  22232232 25788999999988888999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  133 (179)
T 1z0f_A           95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE  133 (179)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            99999887776654331      145667777777 763

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.88  E-value=1.7e-05  Score=73.99  Aligned_cols=108  Identities=24%  Similarity=0.336  Sum_probs=56.8

Q ss_pred             CccEEEeccCccCccchhhhhcCC--C-ceeeecccc--cccceeccCC---ceEEEEEecCchhhHHHHHHHHHhcCCE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGE--P-IISLVPTVG--FNRARVEYGN---KYEVFLYDLGGSEDFRTIWKQYLGTVSQ  381 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG--~-rqrvs~ti~--la~all~~~e---~p~lllLDT~Gl~~~~~l~~~~~~~~~~  381 (537)
                      ...+.++|..++||+++++.|.++  . .....+|.+  +....+..++   ...+.+|||+|.+.+..+|..+++..++
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   99 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY   99 (208)
T ss_dssp             EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence            456789999999999999999998  4 234445554  2333333342   2579999999999999999999999999


Q ss_pred             EEEEEeCCCcchhhhhhhhhhc---------CCcEEEEeccc-chh
Q psy16304        382 TLLVSHSLSGRPDDRCQVYLMS---------CNCQVYLISAK-NLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~i~ll~---------~G~ii~~g~nk-dl~  417 (537)
                      +++|+|..+..+++.+..|+..         .+.++...+|| |+.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  145 (208)
T 2yc2_C          100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP  145 (208)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence            9999999998877766533321         36677777777 774

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.88  E-value=2.5e-05  Score=71.60  Aligned_cols=108  Identities=21%  Similarity=0.303  Sum_probs=78.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc---ceeccCC----------ceEEEEEecCchhhHHHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR---ARVEYGN----------KYEVFLYDLGGSEDFRTIWKQY  375 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~---all~~~e----------~p~lllLDT~Gl~~~~~l~~~~  375 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+...   ..+..++          ...+.+|||+|.+.+...+..+
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            35678999999999999999998773 33344444322   1222221          1588999999999999999999


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      ++..+++++|+|..+..+++.+..|+..       .+.++....|| |+.
T Consensus        91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (195)
T 3bc1_A           91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE  140 (195)
T ss_dssp             TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred             HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            9999999999999988877765533221       45666777777 763

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.87  E-value=3.3e-05  Score=77.71  Aligned_cols=26  Identities=35%  Similarity=0.629  Sum_probs=23.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      -..|+|+|.+|||||||++.|+|..+
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            35799999999999999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.87  E-value=2.9e-05  Score=70.12  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccc--cceeccCC-ceEEEEEecCchhh--HHHHHHHHHhcCCEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED--FRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~--~~~l~~~~~~~~~~vIlV  385 (537)
                      ..+.++|.+++||+++++.|.++......++.+..  ...+..++ ...+.+|||+|.+.  ...++..+++..+++++|
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v   84 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIV   84 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEE
Confidence            45789999999999999999998865555555533  22233333 24788999999966  445567778888999999


Q ss_pred             EeCCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+   ..    .+.++...+|| |+.
T Consensus        85 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~  124 (175)
T 2nzj_A           85 YSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA  124 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence            9999988877665332   22    26677777777 763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.87  E-value=3.7e-05  Score=70.94  Aligned_cols=108  Identities=20%  Similarity=0.344  Sum_probs=78.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHH-HHHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~-~l~~~~~~~~~~vIl  384 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+.+. .++..+++..+++++
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iil   99 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   99 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEE
Confidence            45678999999999999999998873 3334444432  22232232 2578999999998887 788999999999999


Q ss_pred             EEeCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |+|..+..+++.+..|+.       ..+.++....|| |+.
T Consensus       100 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (189)
T 1z06_A          100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR  140 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            999999877766553321       245666777777 763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.86  E-value=4.6e-05  Score=75.58  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=37.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccc-------cCceeeeeEEEEEC--C-cEEEEEeecCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISL-------VPTVGFNRARVEYG--N-KYEVFLYDLGGS  251 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~-------~Pt~G~t~~~i~i~--g-~~~i~~~D~~G~  251 (537)
                      .+|+|+|.+|+|||||+|.|.+...  ..+       .+|.+.+.....+.  | ...+.+||++|+
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~   75 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF   75 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence            5699999999999999999988654  222       45555444444443  2 258999999997

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.86  E-value=2.4e-05  Score=87.55  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=57.4

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCc-----cc---------cC---cee--eeeE--EEEECCcEEEEEeecCC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGEPII-----SL---------VP---TVG--FNRA--RVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~---------~P---t~G--~t~~--~i~i~g~~~i~~~D~~G  250 (537)
                      ...++.+++|+|++|+|||||++.|++....     .+         .+   ..|  +..+  .+... +..+.+||++|
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliDTpG   83 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLDAPG   83 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEECCC
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEeCCC
Confidence            3557899999999999999999999843110     00         00   112  1122  33344 48999999999


Q ss_pred             CchhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +.++...+...+..           ++..++++|
T Consensus        84 ~~~f~~~~~~~l~~-----------ad~~ilVvD  106 (665)
T 2dy1_A           84 YGDFVGEIRGALEA-----------ADAALVAVS  106 (665)
T ss_dssp             SGGGHHHHHHHHHH-----------CSEEEEEEE
T ss_pred             ccchHHHHHHHHhh-----------cCcEEEEEc
Confidence            99888777777776           889999999

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.86  E-value=3.5e-05  Score=69.00  Aligned_cols=107  Identities=20%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+...  ..+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY   86 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEE
Confidence            4577999999999999999998873 22334444322  2222232 268899999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++....|+.      ..+.++...+|| |+.
T Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1r2q_A           87 DITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA  124 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence            9998877766553322      135667777777 763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.85  E-value=4e-05  Score=71.45  Aligned_cols=107  Identities=23%  Similarity=0.372  Sum_probs=78.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+...  ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   88 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMY   88 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEE
Confidence            4578999999999999999998873 33444545332  2222232 268899999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.   .   .+.++....|| |+.
T Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (203)
T 1zbd_A           89 DITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME  126 (203)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            9999887766553322   1   46677777777 774

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.85  E-value=2.5e-05  Score=71.00  Aligned_cols=108  Identities=19%  Similarity=0.396  Sum_probs=72.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce--eeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq--rvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl  384 (537)
                      ...+.++|..++||+++++.|.++...  ...++.+...  ..+..++ ...+.+|||+|.+.+...|..+++..+++++
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   89 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence            456789999999999999999988742  3444444332  2222233 2578899999999888889989999999999


Q ss_pred             EEeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |+|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  129 (180)
T 2g6b_A           90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA  129 (180)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence            999999887766553321      156677777777 763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.85  E-value=2.2e-05  Score=72.54  Aligned_cols=108  Identities=23%  Similarity=0.385  Sum_probs=78.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+.  ....+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   95 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   95 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence            3567899999999999999999877 3333344442  222333233 25788999999988888899999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~  134 (196)
T 3tkl_A           96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  134 (196)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            99999888776663331      235667777777 763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.84  E-value=4.9e-05  Score=78.48  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc--cc-cCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII--SL-VPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~-~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                      ...+++++|++|||||||++.|+|..+.  .. ..|.+.....+...+ ..+.+||++|...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~  226 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-FRYQIIDTPGLLD  226 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-EEEEEEECTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-ceEEEEeCCCccc
Confidence            4678999999999999999999997531  11 123333334555554 8899999999853

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.84  E-value=3.3e-05  Score=70.71  Aligned_cols=108  Identities=23%  Similarity=0.359  Sum_probs=78.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.  ....+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   89 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   89 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence            35678999999999999999998773 223333332  222333232 24788999999998899999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  128 (186)
T 2bme_A           90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD  128 (186)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            99999888776653321      246677777777 774

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.84  E-value=2e-05  Score=73.22  Aligned_cols=108  Identities=22%  Similarity=0.324  Sum_probs=80.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+....  .+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV  102 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIV  102 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEE
Confidence            4567899999999999999999887 3355566664332  222221 36899999999988888899999999999999


Q ss_pred             EeCCCcchhhhhhhhhhc------CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+..      .+.++....|| |+.
T Consensus       103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~  141 (192)
T 2fg5_A          103 YDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS  141 (192)
T ss_dssp             EETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            999998877766533321      36677777777 763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.84  E-value=3.9e-06  Score=79.34  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=22.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|..++|+||||||||||+++|.|.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6889999999999999999999996

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.84  E-value=1.7e-05  Score=82.56  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECC--------------------cEEEEEeecCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGN--------------------KYEVFLYDLGG  250 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g--------------------~~~i~~~D~~G  250 (537)
                      +++|||++|||||||++.|++..       +++..|+.|    .+.+.+                    +..+.+||++|
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g----~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG   78 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG----VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG   78 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE----EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee----eEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence            58999999999999999999742       235678888    444321                    25799999999


Q ss_pred             Cchhh----HH---HHhhhhccccCCCCCCCccceeeEEee
Q psy16304        251 SEDFR----TI---WKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       251 ~~~~r----~~---~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +.+..    .+   +...+..           ++++++|+|
T Consensus        79 l~~~a~~~~~lg~~fl~~ir~-----------ad~ii~VvD  108 (368)
T 2dby_A           79 LVKGAHKGEGLGNQFLAHIRE-----------VAAIAHVLR  108 (368)
T ss_dssp             CCCCCCSSSCTTHHHHHHHHT-----------CSEEEEEEE
T ss_pred             ccccccccchHHHHHHHHHHh-----------CCEEEEEEE
Confidence            86432    11   1112232           889999999

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.83  E-value=4.9e-05  Score=67.73  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+....+|..+++..+++++|+|
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   84 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS   84 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEE
Confidence            4577999999999999999998872 23333333221 1122232 2578899999998888899999999999999999


Q ss_pred             CCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....|+.       ..+.++....|| |+.
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  122 (168)
T 1u8z_A           85 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  122 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence            998887766553221       136677777777 764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.83  E-value=3.3e-05  Score=72.89  Aligned_cols=108  Identities=21%  Similarity=0.326  Sum_probs=78.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....+|++..  ...+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT  105 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            35678999999999999999998773 2333444422  22333333 25788999999998888999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++...+|| |+.
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  144 (201)
T 2ew1_A          106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA  144 (201)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            99999888776653332      245667777777 764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.83  E-value=1.2e-05  Score=74.14  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCcee-----------eeccccccccee---ccCC-ceEEEEEecCchhhHHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIIS-----------LVPTVGFNRARV---EYGN-KYEVFLYDLGGSEDFRTIWKQ  374 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqr-----------vs~ti~la~all---~~~e-~p~lllLDT~Gl~~~~~l~~~  374 (537)
                      ...+.++|.+++||+++++.+.+.....           ..+|++......   ..++ ...+.+|||+|++.+..+|..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   93 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKL   93 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHH
Confidence            4567899999999999998777655332           223444332211   1122 267899999999988899999


Q ss_pred             HHhcCCEEEEEEeCCCc------chhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304        375 YLGTVSQTLLVSHSLSG------RPDDRCQVYLMS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~------~~~~~~~i~ll~-----~G~ii~~g~nk-dl~  417 (537)
                      +++..+++++|+|..+.      ..+..+..|+.+     .+.++...+|| |+.
T Consensus        94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~  148 (198)
T 3t1o_A           94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP  148 (198)
T ss_dssp             HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred             HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence            99999999999998843      344444444433     46677777777 763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.82  E-value=4.8e-05  Score=67.71  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=75.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+. ....+..++ ...+.+|||+|.+....++..+++..+++++|+|
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d   83 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYS   83 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEe
Confidence            4577999999999999999998873 233333331 122222233 2458899999998888899999999999999999


Q ss_pred             CCCcchhhhhhhh---hh----cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVY---LM----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~---ll----~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....+   +.    ..+.++....|| |+.
T Consensus        84 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1kao_A           84 LVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE  121 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence            9998776655422   11    136677777777 763

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.82  E-value=3.8e-05  Score=69.01  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             cEEEeccCccCccchhhhhcCCCceee---ecccccccceeccCC-ceEEEEEecCchhhHHH-HHHHHHhcCCEEEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISL---VPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLLVS  386 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrv---s~ti~la~all~~~e-~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIlVv  386 (537)
                      .+.++|.+++||+++++.|.++.....   ..+.......+..++ ...+.+|||+|.+.... ++..+++..+++++|+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   83 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVF   83 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEE
Confidence            467999999999999999987763222   112222223332233 35788999999977665 6677888899999999


Q ss_pred             eCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+..       .+.++...+|| |+.
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (169)
T 3q85_A           84 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  122 (169)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred             ECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence            99998888776633322       26677777777 763

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.82  E-value=1.6e-05  Score=72.16  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccc--cccceeccCC--ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~--la~all~~~e--~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl  384 (537)
                      ...+.++|.+++||+++++.|.++.. ....+|.+  +....+..++  ...+.+|||+|.+.+..+|..+++..+++++
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLL   85 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEE
Confidence            35678999999999999999998873 33444554  2223333232  2688999999998888889999999999999


Q ss_pred             EEeCCCcchhhhhhhhh---hc-----CCcE-EEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQVYL---MS-----CNCQ-VYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~l---l~-----~G~i-i~~g~nk-dl~  417 (537)
                      |+|..+..+++.+..|+   ..     .+.+ +...+|| |+.
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A           86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence            99999988776655322   11     1333 5566666 764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.81  E-value=8.9e-06  Score=82.17  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY  237 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i  237 (537)
                      .|++++|+|+||||||||+|+|.|.    ..|+.|    ++.+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~----~~~~~G----~i~~  202 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG----LKLRVS----EVSE  202 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT----CCCC----------
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc----cccccc----ceec
Confidence            6899999999999999999999999    899999    7776

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.81  E-value=1.8e-05  Score=72.44  Aligned_cols=107  Identities=20%  Similarity=0.400  Sum_probs=56.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++. .....++.+..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   88 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY   88 (183)
T ss_dssp             EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEE
Confidence            467899999999999999999876 33344444422  22232232 257889999999888888888889999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.      ..+.++...+|| |+.
T Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (183)
T 2fu5_C           89 DITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN  126 (183)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence            9999887776653332      135677777777 763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.80  E-value=6.6e-06  Score=83.37  Aligned_cols=32  Identities=22%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--Ccee
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVG  229 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--Pt~G  229 (537)
                      .+|+++||+|+||||||||+++|.|.    +.  |+.|
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~----l~~~~~~G  111 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL----LSRWPEHR  111 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH----HTTSTTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH----HhhCCCCC
Confidence            58999999999999999999999998    77  8999

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.78  E-value=3.4e-05  Score=72.00  Aligned_cols=108  Identities=20%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+...  ..+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  107 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLL  107 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEE
Confidence            4668899999999999999999887 444555555332  2233233 25788999999988888999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus       108 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A          108 YDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            99998887776653321      135666777777 764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.78  E-value=6.7e-05  Score=67.23  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=75.9

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+.. ...+..+. ...+.+|||+|.+.+..++..+++..+++++|+|
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   83 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   83 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEE
Confidence            4577999999999999999998873 2333443322 22222222 2578899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhh---hc-----CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---MS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l~-----~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....++   .+     .+.++....|| |+.
T Consensus        84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~  122 (172)
T 2erx_A           84 ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES  122 (172)
T ss_dssp             TTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred             CcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence            99887776655222   21     25666777777 764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.78  E-value=2.6e-05  Score=69.81  Aligned_cols=108  Identities=21%  Similarity=0.353  Sum_probs=77.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+....++..+++..+++++|
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   84 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   84 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEE
Confidence            34577999999999999999998873 3334444422  22222232 25889999999988888888999999999999


Q ss_pred             EeCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++....|+..     .+.++....|| |+.
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  122 (168)
T 1z2a_A           85 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL  122 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence            999988777665533221     35666666777 764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.77  E-value=6.4e-06  Score=85.34  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             cccccCCC--CCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304        188 HLSLFDFR--SVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  228 (537)
Q Consensus       188 ~~~l~~~~--G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~  228 (537)
                      .+++.+.+  |++++|+|+||||||||+++|+|.    +.|+.
T Consensus       160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl----~~~~~  198 (365)
T 1lw7_A          160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV----FNTTS  198 (365)
T ss_dssp             GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH----TTCEE
T ss_pred             hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH----hCCCc
Confidence            45566778  999999999999999999999999    88888

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.77  E-value=4.4e-05  Score=68.43  Aligned_cols=107  Identities=22%  Similarity=0.343  Sum_probs=77.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++. .....++.+...  ..+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~   86 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVY   86 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEE
Confidence            467899999999999999999887 344445555332  2222222 267889999999888888899999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++....|+.      ..+.++...+|| |+.
T Consensus        87 d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1z0j_A           87 DITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT  124 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence            9998877766553221      235566667777 764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.76  E-value=2.8e-05  Score=69.88  Aligned_cols=107  Identities=17%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+....++..+++..+++++|+
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   86 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVY   86 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEE
Confidence            4677999999999999999998762 2333444422  22333232 257889999999888888888888999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  124 (170)
T 1z08_A           87 DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE  124 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence            9999887776653321      145666677777 763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.76  E-value=4.2e-05  Score=76.14  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=23.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      ..+|+|+|.+|||||||++.|+|..+
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence            46899999999999999999999865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.76  E-value=3.8e-05  Score=68.63  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=75.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+....++..+++..+++++|+|
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   83 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS   83 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEE
Confidence            4577999999999999999998763 23334444221 1122222 2678899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++.+..|+   .    ..+.++....|| |+.
T Consensus        84 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence            99987776654222   1    136667777777 763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.76  E-value=1.4e-05  Score=75.09  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +.+|.+++|+|+|||||||++++|.+.    ..|+.|
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~----~~~~~~   35 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFED----PSTSYK   35 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHC----TTCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh----hCCCeE
Confidence            457999999999999999999999998    656554

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.75  E-value=3.8e-05  Score=71.11  Aligned_cols=108  Identities=22%  Similarity=0.339  Sum_probs=76.9

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++... ...++.+..  ...+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v  100 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV  100 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEE
Confidence            456789999999999999999988733 233444422  22233233 25789999999988888889999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus       101 ~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A          101 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            99999887776653332      136667777777 763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.75  E-value=3.4e-05  Score=72.30  Aligned_cols=108  Identities=25%  Similarity=0.383  Sum_probs=73.9

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  104 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV  104 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence            45678999999999999999998873 2333444422  22232232 25789999999988888888999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++...+|| |+.
T Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  143 (200)
T 2o52_A          105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD  143 (200)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            99999888776664432      246677777777 763

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.75  E-value=4.8e-05  Score=79.90  Aligned_cols=83  Identities=19%  Similarity=0.118  Sum_probs=43.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEE-----------------EEECC--cEEEEEeecCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRAR-----------------VEYGN--KYEVFLYDLGGS  251 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~-----------------i~i~g--~~~i~~~D~~G~  251 (537)
                      +++|+|.+|||||||++.|+|...       ++..|+.|+..-.                 ..+++  ...+.+||++|+
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~   81 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence            689999999999999999999752       1224555621111                 01232  367999999998


Q ss_pred             chhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      .+..... +.++   .........++++++|+|
T Consensus        82 ~~~a~~~-~~l~---~~~l~~i~~aD~il~VvD  110 (397)
T 1wxq_A           82 VPGAHEG-RGLG---NKFLDDLRMASALIHVVD  110 (397)
T ss_dssp             -----------------CCCSSTTCSEEEEEEE
T ss_pred             ccchhhh-hhHH---HHHHHHHhcCCEEEEEEe
Confidence            6422100 1111   111122345899999999

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.75  E-value=5.3e-05  Score=68.88  Aligned_cols=108  Identities=19%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++... ...++.+..  ...+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   91 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEE
Confidence            356789999999999999999988732 222343422  22222232 25889999999988888899999999999999


Q ss_pred             EeCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.   .   .+.++....|| |+.
T Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  130 (181)
T 2efe_B           92 FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL  130 (181)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            99998887766553321   1   35667777777 763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.74  E-value=5.5e-05  Score=68.38  Aligned_cols=107  Identities=20%  Similarity=0.370  Sum_probs=76.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+.  ....+..++ ...+.+|||+|.+.+...|..+++..+++++|+
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~   94 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY   94 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            5678999999999999999987762 223333332  222232232 257889999999888888899999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++....|+.      ..+.++....|| |+.
T Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  132 (179)
T 2y8e_A           95 DITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  132 (179)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            9998877766553332      145666677777 764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.74  E-value=2.9e-05  Score=79.31  Aligned_cols=103  Identities=16%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             cEEEeccCccCccchhhhhcCCCce----eeecccccccceeccCCceEEEEEecCchhhHHH---HHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT---IWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rq----rvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~---l~~~~~~~~~~vIl  384 (537)
                      ++.++|..++||++++..+.++...    .+.+|+++....+. .. ..+.+|||+|++.++.   .++.|++.++++|+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~-v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il   78 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TL-IDLAVMELPGQLNYFEPSYDSERLFKSVGALVY   78 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SS-SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cE-EEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence            3678999999999999877766532    35677776555443 22 6899999999988753   46899999999999


Q ss_pred             EEeCCCcchhhhhh---hhhh-----cCCcEEEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQ---VYLM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~---i~ll-----~~G~ii~~g~nk-dl~  417 (537)
                      |+|.+++ +.+...   .++.     ..+.++...+|| |+.
T Consensus        79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~  119 (331)
T 3r7w_B           79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL  119 (331)
T ss_dssp             ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred             EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence            9999987 333322   2221     245677888888 774

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.74  E-value=1e-05  Score=77.06  Aligned_cols=27  Identities=15%  Similarity=0.037  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.+|++++|+||||||||||+++|+|.
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999999995

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.74  E-value=5.9e-06  Score=83.84  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY  237 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i  237 (537)
                      +...+|++++|+|+||||||||+|+|.|.    ..|+.|    .+.+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~----~~~~~G----~I~~  206 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE----LGLRTN----EISE  206 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccc----cccccc----ceee
Confidence            34557999999999999999999999999    889999    6665

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.73  E-value=4.8e-05  Score=78.53  Aligned_cols=24  Identities=38%  Similarity=0.672  Sum_probs=22.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      .|+|||++|||||||++.|+|..+
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~   59 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDF   59 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Confidence            899999999999999999999643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.73  E-value=7e-06  Score=94.52  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=70.3

Q ss_pred             EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEEEe
Q psy16304        315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLVSH  387 (537)
Q Consensus       315 llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlVvd  387 (537)
                      .+|+........+.+|||||+||+    ++|+++....+ +.+++||  |+|++  ....++   +.+. ..+.+++++ 
T Consensus       450 ~vgL~~l~l~r~~~~LSGGe~QRv----~LAraL~~~p~-~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~TvivV-  522 (916)
T 3pih_A          450 DVGLEYLTLSRSATTLSGGESQRI----RLATQIGSGLT-GVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVIVV-  522 (916)
T ss_dssp             TTTCTTCBTTSBGGGCCHHHHHHH----HHHHHHHTTCC-SCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEEEE-
T ss_pred             HcCCccccccCCcccCCHHHHHHH----HHHHHHhhCCC-CcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEEEE-
Confidence            467665434556899999999999    99999996333 5699999  99992  223333   3332 334577777 


Q ss_pred             CCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        388 SLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       388 shd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      +||++....++ ++.|      +.|+++..|++.++.
T Consensus       523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL  559 (916)
T ss_dssp             CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred             eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence            89988776655 7888      899999999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.73  E-value=4.5e-05  Score=77.07  Aligned_cols=106  Identities=22%  Similarity=0.350  Sum_probs=79.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce----eeecccccccceecc-CCceEEEEEecCchhhH-----HHHHHHHHhcCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEY-GNKYEVFLYDLGGSEDF-----RTIWKQYLGTVS  380 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq----rvs~ti~la~all~~-~e~p~lllLDT~Gl~~~-----~~l~~~~~~~~~  380 (537)
                      ..+.++|.+++||+++++.|.++...    ...+|++.....+.. ++ ..+.+|||+|++.+     ..++..+++..+
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad   82 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ   82 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT-EEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc-eEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence            46789999999999999999888533    344555544444332 33 78999999999877     567788889999


Q ss_pred             EEEEEEeCCCcchhhhhhhh---hh-----cCCcEEEEeccc-chh
Q psy16304        381 QTLLVSHSLSGRPDDRCQVY---LM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~~i~---ll-----~~G~ii~~g~nk-dl~  417 (537)
                      ++++|+|..+..+++.+..|   +.     ..+.++...+|| |+.
T Consensus        83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            99999999999887766422   22     237788888888 764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.72  E-value=6.2e-05  Score=70.88  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCC--ceEEEEEecCchhhHHH-HHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e--~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++......++.......+..++  ...+.+|||+|++.+.. +|+.|++..+++++|+
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~   86 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   86 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEE
Confidence            45678999999999999999998873322222222222233331  26899999999988877 8899999999999999


Q ss_pred             eCCCcch-hhhhh-hhh--------hcCCcEEEEeccc-chh
Q psy16304        387 HSLSGRP-DDRCQ-VYL--------MSCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~-~~~~~-i~l--------l~~G~ii~~g~nk-dl~  417 (537)
                      |..+... ..... .|.        ...+.++...+|| |+.
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  128 (214)
T 2fh5_B           87 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  128 (214)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             ECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence            9887432 22222 111        1346777788888 774

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.71  E-value=1e-05  Score=85.47  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             cccccCCCCCe--EEEEeCCCCcHHHHHHHHhCCC
Q psy16304        188 HLSLFDFRSVP--ILVLGLDNAGKSSIIKRILGEP  220 (537)
Q Consensus       188 ~~~l~~~~G~~--vgLVG~NGAGKSTLL~~L~G~~  220 (537)
                      .+++.+.+|++  ++|+|+||||||||+|+|+|..
T Consensus        32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34577889999  9999999999999999999984

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.70  E-value=2.3e-05  Score=74.47  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=79.4

Q ss_pred             CCccEEEeccCccCccchhhhhcCCC-ceeeecccccccc-eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a-ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ....+.++|..++||+++++.|.++. .....+|.+.... .+..++ ...+.+|||+|.+.+..+|..+++.++++++|
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC  105 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEE
Confidence            34678899999999999999999887 3334455553322 122122 26788999999998888899999999999999


Q ss_pred             EeCCCcchhhh-hhhhhh-----cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDR-CQVYLM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~-~~i~ll-----~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++. ...|+.     ..+.++...+|| |+.
T Consensus       106 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  144 (214)
T 3q3j_B          106 FDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR  144 (214)
T ss_dssp             EETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence            99999988877 343332     236677777777 764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.70  E-value=0.0001  Score=67.14  Aligned_cols=108  Identities=18%  Similarity=0.228  Sum_probs=76.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   97 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEE
Confidence            35678999999999999999998772 23333333211 1222232 247889999999888889999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |..+...++.+..|+.       ..+.++....|| |+.
T Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  136 (187)
T 2a9k_A           98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  136 (187)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            9998877766542221       136667777777 764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.69  E-value=6.3e-05  Score=69.50  Aligned_cols=108  Identities=21%  Similarity=0.334  Sum_probs=77.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++... ...++.+...  ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v  104 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV  104 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence            356789999999999999999988733 2334444222  2222222 26788999999988888899999999999999


Q ss_pred             EeCCCcchhhhhhhhh---h---cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYL---M---SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~l---l---~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..++..+..|+   .   ..+.++....|| |+.
T Consensus       105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  143 (193)
T 2oil_A          105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS  143 (193)
T ss_dssp             EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence            9999888776655332   1   135667777777 774

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.69  E-value=9.2e-06  Score=88.12  Aligned_cols=44  Identities=20%  Similarity=0.229  Sum_probs=37.6

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      .+++.+.+|..++|+|+||||||||+++|+|.    +.|+.|    .+.+.|
T Consensus       252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~----i~~~~g----iitied  295 (511)
T 2oap_1          252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMF----IPPDAK----VVSIED  295 (511)
T ss_dssp             HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG----SCTTCC----EEEEES
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh----CCCCCC----EEEEcC
Confidence            34555678999999999999999999999999    889999    666654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.69  E-value=8e-05  Score=69.27  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~   93 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   93 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEE
Confidence            35678999999999999999998772 2333333321 12222233 247889999999888889999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.       ..+.++....|+ |+.
T Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (206)
T 2bov_A           94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  132 (206)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence            9999887766553221       136667777777 764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.69  E-value=5.4e-05  Score=70.06  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=73.1

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|++.+.. +..+++..+++++|+
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~   99 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVY   99 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEE
Confidence            4568899999999999999999887 334445554221 1122232 25788999999965544 367888899999999


Q ss_pred             eCCCcchhhhhhhhhh---c------CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM---S------CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll---~------~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.   .      .+.++...+|| |+.
T Consensus       100 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  140 (187)
T 3c5c_A          100 SVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA  140 (187)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence            9999888877663321   1      46667777777 763

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.68  E-value=5.6e-05  Score=68.44  Aligned_cols=106  Identities=18%  Similarity=0.292  Sum_probs=75.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++. .....++.+..  ...+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   87 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF   87 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEE
Confidence            457799999999999999999876 33444444432  22232233 257889999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------c----CCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM------S----CNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~----~G~ii~~g~nk-dl  416 (537)
                      |..+..+++.+..|+.      .    .+.++....|| |+
T Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  128 (177)
T 1wms_A           88 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  128 (177)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             ECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence            9998887766542221      1    45566666676 66

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.67  E-value=8.1e-05  Score=69.59  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeecccc--cccceeccCC-ceEEEEEecCchhhHHH-HHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~--la~all~~~e-~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIl  384 (537)
                      ...+.++|.+++||+++++.|.+.... ...++.+  .....+..++ ...+.+|||+|.+.... ++..+++.++++++
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~il  102 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLI  102 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEE
Confidence            356789999999999999999765421 1111111  1122222233 25778999999965543 67888888999999


Q ss_pred             EEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      |+|..+..+++.+..|+.+       .+.++...+|| |+.
T Consensus       103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  143 (195)
T 3cbq_A          103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  143 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence            9999999888776644321       35667777777 763

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.67  E-value=4.5e-05  Score=69.13  Aligned_cols=107  Identities=24%  Similarity=0.355  Sum_probs=76.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce-eeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++... ...++.+.  ....+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   89 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   89 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEE
Confidence            45779999999999999999988732 33333332  222232232 257889999999888888888899999999999


Q ss_pred             eCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+..     .+.++....|| |+.
T Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  126 (181)
T 3tw8_B           90 DVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP  126 (181)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence            99998887776633321     34666677777 763

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.66  E-value=3.8e-06  Score=82.63  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.3

Q ss_pred             CCCeEEEEeCC---------CCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLD---------NAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~N---------GAGKSTLL~~L~G  218 (537)
                      +..+|+|||.+         |||||||++.+++
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            45789999999         9999999999998

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.66  E-value=2.4e-05  Score=71.44  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~   85 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVY   85 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEE
Confidence            3457799999999999999999777 344445544322 2222232 256789999999887777888888999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl  416 (537)
                      |..+..+++.+..|+.       ..+.++...+|| |+
T Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  123 (181)
T 3t5g_A           86 SVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  123 (181)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999888877653321       135667777777 76

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.66  E-value=1.1e-05  Score=79.99  Aligned_cols=54  Identities=26%  Similarity=0.405  Sum_probs=35.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE--EEECCcEEEEEeecCCCc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~--i~i~g~~~i~~~D~~G~~  252 (537)
                      .+++++|.+|+|||||+|.|.|.......++.|+|+..  +.++  ..+.+||++|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE--NGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT--TSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC--CCEEEEECCCcc
Confidence            58999999999999999999998665566777865532  3332  357889999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.66  E-value=6.6e-05  Score=68.56  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=75.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   97 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   97 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            4567899999999999999999775 22333333311 22222233 245667999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.       ..+.++...+|| |+.
T Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  136 (183)
T 3kkq_A           98 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM  136 (183)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence            9999887776653221       245566677777 763

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.65  E-value=4.3e-05  Score=72.19  Aligned_cols=108  Identities=18%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccceec--cCC--ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVE--YGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~--~~e--~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl  384 (537)
                      ...+.++|..++||+++++.|.++. .....++.+.......  ..+  ...+.+|||+|.+....++..++...+++++
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIL   90 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEE
Confidence            3567899999999999999999887 4445555553332221  111  1568899999998888888899999999999


Q ss_pred             EEeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        385 VSHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |+|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (218)
T 4djt_A           91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK  130 (218)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            999999888776653321      245667777777 763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.65  E-value=5.4e-05  Score=68.56  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~   88 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVF   88 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEE
Confidence            3567899999999999999999886 223333333221 2222232 257889999999888888889999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..++..+..|+.       ..+.++....|| |+.
T Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (181)
T 2fn4_A           89 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE  127 (181)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred             eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            9999877766552221       235666777777 764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.65  E-value=1.8e-05  Score=75.25  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=81.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccceec--cCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~--~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|..|. ...+.++.+.......  .+. ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   94 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   94 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEE
Confidence            4568899999999999999977666 5666777765443321  122 26788999999988888889999999999999


Q ss_pred             EeCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~  417 (537)
                      +|..+..++..+..|+..     .+.++...+|| |+.
T Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  132 (221)
T 3gj0_A           95 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  132 (221)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence            999998888776533322     36667777777 764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.64  E-value=1.8e-05  Score=79.25  Aligned_cols=56  Identities=30%  Similarity=0.478  Sum_probs=35.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE--EEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~--i~i~g~~~i~~~D~~G~~  252 (537)
                      .+.+++++|.+|+|||||+|.|.|.......+..|+|+..  +.++  ..+.++|++|..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG--KELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET--TTEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC--CCEEEEECcCcC
Confidence            4568999999999999999999998665566777766543  3332  357889999975

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.64  E-value=8.7e-05  Score=78.90  Aligned_cols=80  Identities=19%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccc------------------------------cCceeeeeE----EEEECCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISL------------------------------VPTVGFNRA----RVEYGNK  240 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~------------------------------~Pt~G~t~~----~i~i~g~  240 (537)
                      +..+++++|..|+|||||++.|.+..-...                              ....|+|.+    .+...+ 
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-   94 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-   94 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence            456899999999999999999954311000                              011344433    234444 


Q ss_pred             EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ..+.+||++|++++...+...+..           ++++++++|+.
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~-----------aD~~ilVVDa~  129 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQ-----------ADLAVLVISAR  129 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhh-----------CCEEEEEEECC
Confidence            899999999999887665555554           89999999943

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.64  E-value=3.7e-05  Score=69.76  Aligned_cols=107  Identities=15%  Similarity=0.257  Sum_probs=67.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccC-C-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYG-N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~-e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl  384 (537)
                      ...+.++|..++||+++++.|.++. .....++.+.  ....+..+ + ...+.+|||+|.+.+...|..+++..+++++
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   87 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   87 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEE
Confidence            3567899999999999999999887 3334444442  22233222 1 2688999999998888888888899999999


Q ss_pred             EEeCCCcchhhhhhhhhhc----------CCcEEEEeccc-ch
Q psy16304        385 VSHSLSGRPDDRCQVYLMS----------CNCQVYLISAK-NL  416 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~ll~----------~G~ii~~g~nk-dl  416 (537)
                      |+|..+..+++.+..|+..          .+.++....|| |+
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  130 (182)
T 1ky3_A           88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA  130 (182)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence            9999998877766533211          45566667777 76

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.63  E-value=7.7e-05  Score=67.80  Aligned_cols=102  Identities=20%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ...+.++|.+++||+++++.|.++......+|.+.. ...+..++ ...+.+|||+|++.     ..+++.++++++|+|
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D   81 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFS   81 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEE
Confidence            356789999999999999999998854455665522 22222233 25688999999975     456778999999999


Q ss_pred             CCCcchhhhhhhh---hhc------CCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVY---LMS------CNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~---ll~------~G~ii~~g~nk-dl  416 (537)
                      ..+..+++.+..|   +..      .+.++...+|| |+
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (178)
T 2iwr_A           82 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  120 (178)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred             CcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999888777643   321      35677777787 66

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.63  E-value=1.8e-05  Score=91.00  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=72.6

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCEEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQTLLV  385 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~vIlV  385 (537)
                      +..+|+........+.+|||||+||+    ++|+++..... +.+++||  |+||  .....++   +.+ +..+.+|||
T Consensus       488 L~~vGL~~l~ldR~~~tLSGGEkQRV----~LA~aL~~~~~-~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIv  561 (972)
T 2r6f_A          488 LQNVGLDYLTLSRSAGTLSGGEAQRI----RLATQIGSRLT-GVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIV  561 (972)
T ss_dssp             HHHHTCTTSBSSSBGGGCCHHHHHHH----HHHHHHTTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEE
T ss_pred             hhhCCCCccccCCccccCCHHHHHHH----HHHHHHhhCCC-CCEEEEeCcccCCCHHHHHHHHHHHHHH-HhCCCEEEE
Confidence            44678765444566899999999999    99999886322 5899999  9999  2333333   444 344567888


Q ss_pred             EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      + +||++.+..++ +++|      ++|+++..|++.++.
T Consensus       562 V-eHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~  599 (972)
T 2r6f_A          562 V-EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  599 (972)
T ss_dssp             E-CCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred             E-ecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence            8 89998776655 7777      789999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.62  E-value=0.00016  Score=75.91  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE---------------------C----CcEEEEEeecC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY---------------------G----NKYEVFLYDLG  249 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i---------------------~----g~~~i~~~D~~  249 (537)
                      +..+++++|..|+|||||++.|+|....   ...|+...++..                     .    ....+.+||++
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTS---KKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCC---SSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccc---cccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            4578999999999999999999995221   122211111110                     0    02689999999


Q ss_pred             CCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        250 GSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       250 G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      |++++...+...+..           ++.+++++|+.
T Consensus        84 Gh~~~~~~~~~~~~~-----------~D~~ilVvda~  109 (403)
T 3sjy_A           84 GHEVLMATMLSGAAL-----------MDGAILVVAAN  109 (403)
T ss_dssp             CCGGGHHHHHHHHTT-----------CSEEEEEEETT
T ss_pred             CcHHHHHHHHHHHhh-----------CCEEEEEEECC
Confidence            999887766666655           89999999943

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.62  E-value=4e-05  Score=71.76  Aligned_cols=107  Identities=21%  Similarity=0.383  Sum_probs=77.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+...  ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~   88 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY   88 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEE
Confidence            4678999999999999999998873 23334444322  2233233 257899999999888888888899999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.      ..+.++...+|| |+.
T Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (206)
T 2bcg_Y           89 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK  126 (206)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            9999887776653331      245666777777 774

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.61  E-value=0.00015  Score=78.90  Aligned_cols=78  Identities=18%  Similarity=0.266  Sum_probs=55.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhC------------------CCCccc---cCceee----eeEEEEECCcEEEEEeecCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILG------------------EPIISL---VPTVGF----NRARVEYGNKYEVFLYDLGG  250 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G------------------~~~~~~---~Pt~G~----t~~~i~i~g~~~i~~~D~~G  250 (537)
                      -.+|+|+|..|||||||++.|++                  ..+...   ....|+    ....+.+.+ ..+.+||++|
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~liDTPG   91 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD-YLINLLDTPG   91 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-EEEEEECCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-EEEEEEECCC
Confidence            35799999999999999999961                  100000   001221    223455665 9999999999


Q ss_pred             CchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       251 ~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      +.++...+...+..           ++++++++|+
T Consensus        92 ~~df~~~~~~~l~~-----------aD~allVvDa  115 (528)
T 3tr5_A           92 HADFTEDTYRTLTA-----------VDSALMVIDA  115 (528)
T ss_dssp             STTCCHHHHHGGGG-----------CSEEEEEEET
T ss_pred             chhHHHHHHHHHHh-----------CCEEEEEEeC
Confidence            99888777676666           8999999993

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.61  E-value=2.1e-05  Score=74.38  Aligned_cols=26  Identities=15%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|+++||+|+||||||||+++|+|.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999999997

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.61  E-value=2.2e-05  Score=79.34  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY  237 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i  237 (537)
                      ..|++++|+|+||||||||+|+|. .    ..|+.|    +|.+
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~----~~~~~G----~i~~  197 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-G----EELRTQ----EVSE  197 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-S----CCCCCS----CC--
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-H----hhCccc----cccc
Confidence            368999999999999999999999 9    899999    6665

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.61  E-value=0.00013  Score=67.62  Aligned_cols=107  Identities=18%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+. ...+..+++..+++++|+
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~  106 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVY  106 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEE
Confidence            45688999999999999999998863 23334444221 1122232 25788999999977 777888999999999999


Q ss_pred             eCCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+   .    ..+.++...+|| |+.
T Consensus       107 D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  145 (196)
T 2atv_A          107 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  145 (196)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence            999988777655222   1    145667777777 764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.61  E-value=8.3e-05  Score=82.35  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=55.7

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC------------------------------ceeeee----EEEEECC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVP------------------------------TVGFNR----ARVEYGN  239 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P------------------------------t~G~t~----~~i~i~g  239 (537)
                      ++..+|+++|..|+|||||++.|++........                              ..|+|.    ..+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            356789999999999999999998752211110                              123322    234444 


Q ss_pred             cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        240 KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       240 ~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      +..+.+||++|++++...+...+..           ++++++++|+.
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~-----------aD~~llVVDa~  279 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQ-----------ADMAILCVDCS  279 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSC-----------CSEEEEEEECS
T ss_pred             CceEEEEECCCCcccHHHHHHHHhh-----------cCceEEEEECC
Confidence            4889999999998876544444443           89999999943

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.61  E-value=6.8e-05  Score=69.36  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=76.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.. ...+..+. ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   87 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVF   87 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEE
Confidence            35678999999999999999998773 2333343322 22222232 257889999999888889999999999999999


Q ss_pred             eCCCcchhhhhhhhh---hc-----CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYL---MS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~l---l~-----~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++....++   .+     .+.++....|| |+.
T Consensus        88 d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~  127 (199)
T 2gf0_A           88 SVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET  127 (199)
T ss_dssp             ETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred             ECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence            999887776655222   11     24566666777 763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.61  E-value=9.8e-05  Score=68.13  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=70.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccce--eccCCceEEEEEecCc----------hhhHHHHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYGNKYEVFLYDLGG----------SEDFRTIWKQYL  376 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al--l~~~e~p~lllLDT~G----------l~~~~~l~~~~~  376 (537)
                      ...+.++|..++||+++++.|.++. ...+.++.+.+...  ...+  ..+.+|||+|          .+.+..++..++
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence            4567899999999999999999987 55555555544332  2223  4789999999          677777888888


Q ss_pred             hcC---CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        377 GTV---SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       377 ~~~---~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                      +..   +++++|+|..+........  .++...+.++....|| |+
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  146 (195)
T 1svi_A          101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK  146 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence            776   7899999988776655543  4444567777777777 76

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.60  E-value=6.1e-05  Score=69.33  Aligned_cols=107  Identities=22%  Similarity=0.343  Sum_probs=77.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+...  ..+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   94 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   94 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence            3567899999999999999999887 333444444322  2222232 26789999999988888899999999999999


Q ss_pred             EeCCCcchhhhhhhhh---hc----CCcEEEEeccc-ch
Q psy16304        386 SHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NL  416 (537)
Q Consensus       386 vdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl  416 (537)
                      +|..+..++..+..|+   ..    .+.++....|| |+
T Consensus        95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  133 (195)
T 1x3s_A           95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK  133 (195)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence            9999887776655332   11    35666677777 66

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.60  E-value=4.4e-05  Score=70.45  Aligned_cols=108  Identities=25%  Similarity=0.359  Sum_probs=77.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+...  ..+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v  101 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM  101 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence            35678999999999999999998873 33344445332  2222222 26889999999987777788888999999999


Q ss_pred             EeCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.   .   .+.++....|| |+.
T Consensus       102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  140 (189)
T 2gf9_A          102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE  140 (189)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            99998887776653321   1   36677777777 764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.60  E-value=2.3e-05  Score=83.04  Aligned_cols=79  Identities=22%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhHH-------HHhhhhc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTI-------WKQYLGT  264 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~-------~~~~i~~  264 (537)
                      -.+++|+|..|+|||||++.|++..++...+..|+|.    ..+.+.+...+.+||++|+.++...       +...+..
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~  113 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR  113 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence            4679999999999999999999986644445555433    3556665458999999998755322       1122222


Q ss_pred             cccCCCCCCCccceeeEEeec
Q psy16304        265 VSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       265 v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                                 ++++++++|.
T Consensus       114 -----------aD~vllVvD~  123 (423)
T 3qq5_A          114 -----------ADCGILVTDS  123 (423)
T ss_dssp             -----------CSEEEEECSS
T ss_pred             -----------CCEEEEEEeC
Confidence                       8889999984

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.60  E-value=2.7e-05  Score=72.84  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~  103 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVY  103 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEE
Confidence            45678999999999999999998873 3333444422 22222121 267889999999888878888999999999999


Q ss_pred             eCCCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+.   .    .+.++...+|| |+.
T Consensus       104 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  142 (201)
T 3oes_A          104 SVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS  142 (201)
T ss_dssp             ETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred             eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence            9999888876663322   1    25567777777 764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.60  E-value=7.9e-05  Score=81.55  Aligned_cols=28  Identities=29%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII  222 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~  222 (537)
                      .-.+|+|+|..|||||||+|.|.|..++
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            4568999999999999999999998653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.58  E-value=7.7e-05  Score=68.75  Aligned_cols=106  Identities=17%  Similarity=0.364  Sum_probs=71.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc---eeeecccccccc--eecc-----CCceEEEEEecCchhhHHHHHHHHHhcCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI---ISLVPTVGFNRA--RVEY-----GNKYEVFLYDLGGSEDFRTIWKQYLGTVS  380 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r---qrvs~ti~la~a--ll~~-----~e~p~lllLDT~Gl~~~~~l~~~~~~~~~  380 (537)
                      ..+.++|.+++||+++++.|.++..   ....+|++....  .+..     .. ..+.+|||+|++.+..++..+++..+
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRD-LVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC----------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCc-eEEEEEecCCCHHHHHhhHHHccCCc
Confidence            4578999999999999999998742   223445443321  1111     12 68899999999888888888888888


Q ss_pred             EEEEEEeCCCc-chhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304        381 QTLLVSHSLSG-RPDDRCQVYLMS-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       381 ~vIlVvdshd~-~~~~~~~i~ll~-----~G~ii~~g~nk-dl~  417 (537)
                      ++++|+|..+. .+++.+..|+.+     .+.++...+|+ |+.
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  125 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS  125 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence            99999988876 355555544322     46777777787 773

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.58  E-value=2.8e-05  Score=75.67  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHh---CCCCccccCcee
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRIL---GEPIISLVPTVG  229 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~---G~~~~~~~Pt~G  229 (537)
                      ++++++|+|+||||||||+++|+   |.    ..++.|
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~----~~~~~G   59 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL----QHLSSG   59 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC----CCEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC----eEecHH
Confidence            47899999999999999999999   98    778888

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.58  E-value=4.3e-05  Score=72.83  Aligned_cols=108  Identities=23%  Similarity=0.383  Sum_probs=74.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++... ...++.+..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV   92 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV   92 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence            356789999999999999999988733 333444432  22233232 25789999999988888888889999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+.
T Consensus        93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  131 (223)
T 3cpj_B           93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA  131 (223)
T ss_dssp             EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            99999888776653331      235677777777 774

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.57  E-value=5.9e-05  Score=70.27  Aligned_cols=105  Identities=17%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccc--cccceec-----cCCceEEEEEecCchhhHHHH-H--HHHHhc
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG--FNRARVE-----YGNKYEVFLYDLGGSEDFRTI-W--KQYLGT  378 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~--la~all~-----~~e~p~lllLDT~Gl~~~~~l-~--~~~~~~  378 (537)
                      ....+.++|..++||+++++.+.+.....  ++.+  .....+.     ... ..+.+|||+|.+.+... |  ..+++.
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTS-CCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCe-eEEEEEECCCCHHHHhhhhhccccccc
Confidence            35678899999999999999888765322  2222  2222221     122 68999999999775444 4  889999


Q ss_pred             CCEEEEEEeCCCc--chhhhhhhhhhc-----CCcEEEEeccc-ch
Q psy16304        379 VSQTLLVSHSLSG--RPDDRCQVYLMS-----CNCQVYLISAK-NL  416 (537)
Q Consensus       379 ~~~vIlVvdshd~--~~~~~~~i~ll~-----~G~ii~~g~nk-dl  416 (537)
                      ++++++|+|.++.  ..+.....|+.+     .+.++...+|| |+
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl  141 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG  141 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence            9999999999987  333333333332     46677778888 76

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.56  E-value=7.1e-05  Score=68.41  Aligned_cols=107  Identities=21%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.. .....+..++ ...+.+|||+|.+.+..++..+++..+++++|++
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   84 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   84 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEE
Confidence            4578999999999999999998772 22323332 1122222233 2457789999999888899999999999999999


Q ss_pred             CCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....|+   .    ..+.++....|+ |+.
T Consensus        85 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP  122 (189)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence            99987776655222   1    135667777777 763

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.55  E-value=2.4e-05  Score=73.01  Aligned_cols=107  Identities=22%  Similarity=0.387  Sum_probs=74.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.  ....+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV  112 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence            35678999999999999999998773 222333332  222232232 25788999999988777888888999999999


Q ss_pred             EeCCCcchhhhhhhhh--h-c---CCcEEEEeccc-ch
Q psy16304        386 SHSLSGRPDDRCQVYL--M-S---CNCQVYLISAK-NL  416 (537)
Q Consensus       386 vdshd~~~~~~~~i~l--l-~---~G~ii~~g~nk-dl  416 (537)
                      +|..+..+++.+..|+  + .   .+.++....|| |+
T Consensus       113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl  150 (199)
T 3l0i_B          113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  150 (199)
T ss_dssp             C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence            9999988877766433  1 1   36677777888 76

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.55  E-value=3.1e-05  Score=71.79  Aligned_cols=25  Identities=16%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|..++|+||||||||||+++|.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.55  E-value=0.00013  Score=79.48  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=53.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC--C----------------c---cccCceeeee----EEEEECCcEEEEEeecC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP--I----------------I---SLVPTVGFNR----ARVEYGNKYEVFLYDLG  249 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~----------------~---~~~Pt~G~t~----~~i~i~g~~~i~~~D~~  249 (537)
                      +..+++|+|..|||||||++.|++..  .                .   ...++.|++.    ..+.+.+ ..+.+||++
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD-CLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT-EEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC-eEEEEEECC
Confidence            45679999999999999999998521  0                0   0112334332    2344554 999999999


Q ss_pred             CCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        250 GSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       250 G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      |+.++...+...+..           ++++++++|+
T Consensus        91 G~~df~~~~~~~l~~-----------aD~~IlVvDa  115 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTA-----------VDCCLMVIDA  115 (529)
T ss_dssp             CSTTCCHHHHHGGGG-----------CSEEEEEEET
T ss_pred             CChhHHHHHHHHHHH-----------CCEEEEEEeC
Confidence            998877666666655           8999999993

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.55  E-value=0.00013  Score=67.13  Aligned_cols=106  Identities=23%  Similarity=0.343  Sum_probs=75.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-c-------------------------------
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-K-------------------------------  354 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~-------------------------------  354 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+.  ....+..++ .                               
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY   86 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence            45678999999999999999998862 233333331  111121121 1                               


Q ss_pred             ------eEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhhhhhh----cCCcEEEEeccc-c
Q psy16304        355 ------YEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM----SCNCQVYLISAK-N  415 (537)
Q Consensus       355 ------p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~i~ll----~~G~ii~~g~nk-d  415 (537)
                            ..+.+|||+|.+.+...+..+++..+++++|+|..+..++.....|+.    ..+.++....|| |
T Consensus        87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D  158 (208)
T 3clv_A           87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID  158 (208)
T ss_dssp             CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred             cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence                  578899999998888888999999999999999999877766553322    245677777777 5

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.53  E-value=3.7e-05  Score=78.99  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ++...++.+++++|+||||||||++.|++
T Consensus        50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             GGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34456899999999999999999999975

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.53  E-value=5.5e-05  Score=67.76  Aligned_cols=106  Identities=25%  Similarity=0.428  Sum_probs=73.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   83 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   83 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEE
Confidence            3577999999999999999998873 3333444422  22232232 257889999999888888888999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      |..+..+++.+..|+.      ..+.++....|| |+
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  120 (170)
T 1g16_A           84 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM  120 (170)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence            9998877766553321      136677777777 66

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.52  E-value=6.3e-05  Score=78.24  Aligned_cols=72  Identities=10%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      .++++|..++|||||++.|+ .    ...|.+.....+...+ ..+.+||++|++++...+...+..           ++
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-~----~giTi~~~~~~~~~~~-~~i~iiDtPGh~~f~~~~~~~~~~-----------aD   85 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-K----KGTSSDITMYNNDKEG-RNMVFVDAHSYPKTLKSLITALNI-----------SD   85 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-E----EEEESSSEEEEECSSS-SEEEEEECTTTTTCHHHHHHHHHT-----------CS
T ss_pred             EEEEECCCCCCHHHHHHHHH-h----CCEEEEeeEEEEecCC-eEEEEEECCChHHHHHHHHHHHHH-----------CC
Confidence            79999999999999999998 1    2222222222344444 789999999999876555455554           88


Q ss_pred             eeeEEeecCc
Q psy16304        278 CQVYLIMCGV  287 (537)
Q Consensus       278 ~il~v~Ds~~  287 (537)
                      .+++++| +.
T Consensus        86 ~ailVvd-~~   94 (370)
T 2elf_A           86 IAVLCIP-PQ   94 (370)
T ss_dssp             EEEEEEC-TT
T ss_pred             EEEEEEc-CC
Confidence            9999999 44

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.52  E-value=7.8e-05  Score=69.05  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=78.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  102 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCF  102 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEE
Confidence            45688999999999999999998873 33344444221 1222232 256789999999988888899999999999999


Q ss_pred             eCCCcchhhhh-hhhh--h---cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRC-QVYL--M---SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~-~i~l--l---~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+ ..|+  +   ..+.++...+|| |+.
T Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  140 (194)
T 3reg_A          103 AVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR  140 (194)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence            99999888775 3222  1   135677777777 763

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.52  E-value=0.00015  Score=66.99  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=72.4

Q ss_pred             CCccEEEeccCccCccchhhhhcCCC-ceeeecccccccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ....+.++|..++||+++++.|.++. .....+|.+.....+..++ ...+.+|||+|++.+.     +++..+++++|+
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~   93 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVF   93 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEE
Confidence            34678899999999999999999887 3334444332223333343 2567789999997665     677789999999


Q ss_pred             eCCCcchhhhhhhhhh---c----CCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM---S----CNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl  416 (537)
                      |..+..+++.+..|+.   .    .+.++...+|| |+
T Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (184)
T 3ihw_A           94 SLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI  131 (184)
T ss_dssp             ETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            9999988877653332   1    24566667777 66

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.52  E-value=0.00019  Score=65.84  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeeccccccccee--ccCCceEEEEEecCc----------hhhHHHHHHHHHh
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV--EYGNKYEVFLYDLGG----------SEDFRTIWKQYLG  377 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all--~~~e~p~lllLDT~G----------l~~~~~l~~~~~~  377 (537)
                      ...+.++|..++||+++++.|.++......++.+.+....  ..+  ..+.+|||+|          .+.+..+++.+++
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK  100 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence            4568899999999999999999998666666666444332  223  4788999999          5667777888877


Q ss_pred             cC---CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        378 TV---SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       378 ~~---~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                      ..   +.+++|+|..+........  .++...+.++....|| |+
T Consensus       101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  145 (195)
T 3pqc_A          101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK  145 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             cCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence            65   6788889876654433322  4555567777777777 76

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.51  E-value=7.9e-05  Score=70.59  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....+|.... ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~  113 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCF  113 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEE
Confidence            45688999999999999999998872 2333333311 11222232 257889999999988889999999999999999


Q ss_pred             eCCCcchhhhhh-hhhh-----cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYLM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~ll-----~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+. .|+.     ..+.++...+|| |+.
T Consensus       114 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  151 (214)
T 2j1l_A          114 DVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR  151 (214)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred             ECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence            999988877664 3322     135667777777 763

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.51  E-value=0.00015  Score=81.36  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=55.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHh---CCCC-----------c-------cccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRIL---GEPI-----------I-------SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~---G~~~-----------~-------~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                      -.+++|+|..|+|||||++.|.   |...           .       ...+|.+.....+.+.+ ..+.+||++|+.++
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df   90 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDTPGHVDF   90 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT-EEEEEECCCSSTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC-eEEEEEECcCccch
Confidence            3579999999999999999997   2200           0       01223333334555665 99999999999988


Q ss_pred             hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ...+...+..           ++++++++|
T Consensus        91 ~~~~~~~l~~-----------aD~~ilVvD  109 (691)
T 1dar_A           91 TIEVERSMRV-----------LDGAIVVFD  109 (691)
T ss_dssp             HHHHHHHHHH-----------CSEEEEEEE
T ss_pred             HHHHHHHHHH-----------CCEEEEEEE
Confidence            8777777776           899999999

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.50  E-value=6.3e-05  Score=69.14  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=77.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|.+++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   86 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   86 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEE
Confidence            35678999999999999999998863 23334444221 1122222 367889999999888778888888999999999


Q ss_pred             eCCCcchhhhh-hhhh--h---cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRC-QVYL--M---SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~-~i~l--l---~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+ ..|+  +   ..+.++...+|| |+.
T Consensus        87 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  124 (184)
T 1m7b_A           87 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR  124 (184)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence            99998887766 3332  1   146677777777 764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.50  E-value=0.00011  Score=76.90  Aligned_cols=80  Identities=15%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCC-------Ccc--------ccCceeeeeEE--EEEC-CcEEEEEeecCCCchhhHH
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEP-------IIS--------LVPTVGFNRAR--VEYG-NKYEVFLYDLGGSEDFRTI  257 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~-------~~~--------~~Pt~G~t~~~--i~i~-g~~~i~~~D~~G~~~~r~~  257 (537)
                      ..+++++|..|+|||||++.|++..       +..        .....|+|.+.  +.+. ++..+.+||++|++++...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            4579999999999999999998731       100        01133443322  2222 2488999999999887654


Q ss_pred             HHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       258 ~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      +...+..           ++.+++++|+.
T Consensus        83 ~~~~~~~-----------aD~~ilVvda~  100 (397)
T 1d2e_A           83 MITGTAP-----------LDGCILVVAAN  100 (397)
T ss_dssp             HHHTSSC-----------CSEEEEEEETT
T ss_pred             HHhhHhh-----------CCEEEEEEECC
Confidence            4444443           89999999943

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.49  E-value=0.00022  Score=63.22  Aligned_cols=105  Identities=21%  Similarity=0.265  Sum_probs=68.6

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeeccccc----ccceeccCCceEEEEEecCchhh-------HHHHHHHHHhcCC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGF----NRARVEYGNKYEVFLYDLGGSED-------FRTIWKQYLGTVS  380 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l----a~all~~~e~p~lllLDT~Gl~~-------~~~l~~~~~~~~~  380 (537)
                      .+.++|..++||+++++.|.++......+..+.    ....+..++ ..+.+|||+|...       ....+..+++..+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            467899999999999999998874333222222    222333344 6899999999865       5667778888999


Q ss_pred             EEEEEEeCCCcchhhhh--hhhhhcCCcEEEEeccc-chh
Q psy16304        381 QTLLVSHSLSGRPDDRC--QVYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       381 ~vIlVvdshd~~~~~~~--~i~ll~~G~ii~~g~nk-dl~  417 (537)
                      ++++|+|.++.......  ..++...+.++...+|| |+.
T Consensus        82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP  121 (161)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred             EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence            99999998875433222  23333445666666776 763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.49  E-value=0.00011  Score=75.40  Aligned_cols=110  Identities=16%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             CCCCeEEEEeCCCCcHHHH---HHHHhCCCCcc-----------------------------------------------
Q psy16304        194 FRSVPILVLGLDNAGKSSI---IKRILGEPIIS-----------------------------------------------  223 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTL---L~~L~G~~~~~-----------------------------------------------  223 (537)
                      .+..++.|+|..+|||||+   +++|-+..|+.                                               
T Consensus         3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~~~~~~~   82 (340)
T 4fid_A            3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEFTTEDPV   82 (340)
T ss_dssp             -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGGSCCSCC
T ss_pred             CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHHhhcccC


Q ss_pred             --------------------------------------------------------------ccCceeeeeEEEEECCcE
Q psy16304        224 --------------------------------------------------------------LVPTVGFNRARVEYGNKY  241 (537)
Q Consensus       224 --------------------------------------------------------------~~Pt~G~t~~~i~i~g~~  241 (537)
                                                                                    ..||.|+....+.+.+ +
T Consensus        83 ~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~-v  161 (340)
T 4fid_A           83 TLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKD-I  161 (340)
T ss_dssp             CSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSS-C
T ss_pred             CCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEEeee-e


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-c----------CcccccCCcccccccCcCCccccCC
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-C----------GVHQVSGIPDELTSATHLPLVDFRS  310 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s----------~~~~~~~l~~~l~~~~~l~~~~~~~  310 (537)
                      .+.+||++|++.+|..|..++..           ++++++|+| +          +..++.+...++..+-.........
T Consensus       162 ~l~iwDtaGQe~~R~~w~~yy~~-----------a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p  230 (340)
T 4fid_A          162 PFHLIDVGGQRSERKXWVSFFSD-----------VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV  230 (340)
T ss_dssp             EEEEEECCSCHHHHHHHHTTSCS-----------CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred             eeccccCCCcccccccHHHHhcc-----------CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe


Q ss_pred             ccEEE
Q psy16304        311 VPILV  315 (537)
Q Consensus       311 ~~L~l  315 (537)
                      ..+..
T Consensus       231 iiLv~  235 (340)
T 4fid_A          231 KLIFL  235 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.49  E-value=0.0001  Score=69.04  Aligned_cols=107  Identities=25%  Similarity=0.424  Sum_probs=77.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+..  ...+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   99 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV   99 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            45678999999999999999998763 3333444422  22232232 25789999999988888889999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      +|..+..+++.+..|+.      ..+.++....|| |+
T Consensus       100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  137 (213)
T 3cph_A          100 YDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM  137 (213)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            99998877766553321      135667777777 76

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.48  E-value=0.00016  Score=74.84  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccc--------cCceeeeeEEEEE--CC-cEEEEEeecCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISL--------VPTVGFNRARVEY--GN-KYEVFLYDLGGS  251 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~--------~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~  251 (537)
                      .+++|+|++|+|||||++.|.+...  ...        .++.++....+.+  ++ ...+.+||++|+
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~  105 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY  105 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence            4589999999999999999987632  111        1454433333322  23 247899999998

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.48  E-value=0.00014  Score=76.22  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC--------CCccc--------cCceeeeeE--EEEEC-CcEEEEEeecCCCchhh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE--------PIISL--------VPTVGFNRA--RVEYG-NKYEVFLYDLGGSEDFR  255 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~--------~~~~~--------~Pt~G~t~~--~i~i~-g~~~i~~~D~~G~~~~r  255 (537)
                      +..+++++|..|+|||||++.|++.        .+..+        ..+.|+|.+  .+.+. ++..+.+||++|++++.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~   89 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   89 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence            4567999999999999999999872        11111        113443332  22232 24889999999999887


Q ss_pred             HHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        256 TIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       256 ~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ..+...+..           ++.+++++|+.
T Consensus        90 ~~~~~~~~~-----------aD~~ilVvda~  109 (405)
T 2c78_A           90 KNMITGAAQ-----------MDGAILVVSAA  109 (405)
T ss_dssp             HHHHHHHTT-----------CSSEEEEEETT
T ss_pred             HHHHHHHHH-----------CCEEEEEEECC
Confidence            655555554           89999999943

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.47  E-value=7e-05  Score=69.70  Aligned_cols=108  Identities=18%  Similarity=0.236  Sum_probs=73.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   99 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCF   99 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEE
Confidence            4568899999999999999999887 33333444321 11222233 246779999999887778888889999999999


Q ss_pred             eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+. .|+  +.   .+.++...+|| |+.
T Consensus       100 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  137 (201)
T 2q3h_A          100 SVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR  137 (201)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence            999988877664 333  11   36667777777 763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.47  E-value=3.1e-05  Score=80.59  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-ee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-VG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-~G  229 (537)
                      +.+|+.++|+||||||||||++.|+|.    +.|+ .|
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~----~~~~~~g  166 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDY----INQTKSY  166 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHH----HHHHSCC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhh----cCcCCCc
Confidence            568999999999999999999999999    8887 78

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.47  E-value=7.1e-05  Score=70.71  Aligned_cols=109  Identities=21%  Similarity=0.276  Sum_probs=77.7

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ....+.++|..++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++.++++++|
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv  106 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC  106 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence            345688999999999999999998863 22234444221 1222232 36789999999988888888888899999999


Q ss_pred             EeCCCcchhhhh-hhhh--hc---CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRC-QVYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~-~i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+ ..|+  +.   .+.++...+|| |+.
T Consensus       107 ~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  145 (205)
T 1gwn_A          107 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR  145 (205)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence            999998887766 3332  11   36677777777 763

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.47  E-value=0.0002  Score=77.10  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCC----Cc--cccCceeee----eEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEP----II--SLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~----~~--~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      ..+++++|..|+|||||++.|+|..    ..  ......|+|    ...+.+++ ..+.+||++|++++...+...+.. 
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~iiDtPGh~~~~~~~~~~~~~-   96 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPGHADLIRAVVSAADI-   96 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSSHHHHHHHHHHHTTS-
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-EEEEEEECCChHHHHHHHHHHHhh-
Confidence            4679999999999999999999975    10  011222322    23455555 899999999998776555554444 


Q ss_pred             ccCCCCCCCccceeeEEeecC
Q psy16304        266 SQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       266 ~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                                ++.+++++|+.
T Consensus        97 ----------aD~~ilVvda~  107 (482)
T 1wb1_A           97 ----------IDLALIVVDAK  107 (482)
T ss_dssp             ----------CCEEEEEEETT
T ss_pred             ----------CCEEEEEEecC
Confidence                      89999999943

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.45  E-value=4.1e-05  Score=71.43  Aligned_cols=108  Identities=16%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ...+.++|..++||+++++.|.++. .....++.+..  ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEE
Confidence            3567899999999999999999887 33333444422  22222222 25789999999988777788888899999999


Q ss_pred             EeCCCcchhhhhhhhhhc----------CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLMS----------CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll~----------~G~ii~~g~nk-dl~  417 (537)
                      +|..+..++..+..|+..          .+.++....|| |+.
T Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           88 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            999988877665533221          35566666777 763

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.45  E-value=0.00014  Score=77.09  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC--CCccc----------------------------cCceeeeeE----EEEECCcE
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE--PIISL----------------------------VPTVGFNRA----RVEYGNKY  241 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~--~~~~~----------------------------~Pt~G~t~~----~i~i~g~~  241 (537)
                      ..+++++|..|+|||||++.|++.  .+...                            ....|+|.+    .+... +.
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-~~   84 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-KY   84 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-SC
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-Ce
Confidence            457999999999999999999753  11000                            001233322    23334 48


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcc
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVH  288 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~  288 (537)
                      .+.+||++|++++...+...+..           ++++++++|+...
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~-----------aD~~ilVvDa~~g  120 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQ-----------ADAAILVVSAKKG  120 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSC-----------CSEEEEEEECSTT
T ss_pred             EEEEEECCCcHHHHHHHHhhhhh-----------cCEEEEEEECCCC
Confidence            89999999999887655555444           8999999994333

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.45  E-value=5e-05  Score=74.47  Aligned_cols=32  Identities=25%  Similarity=0.201  Sum_probs=29.5

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHh---CCCCccccCcee
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRIL---GEPIISLVPTVG  229 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~---G~~~~~~~Pt~G  229 (537)
                      .+|.+++|+|++||||||++++|+   |.    ..++.|
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~----~~~d~g   59 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNW----RLLDSG   59 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTC----EEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCC----CcCCCC
Confidence            478999999999999999999999   98    778888

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.45  E-value=5.3e-05  Score=86.50  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=71.1

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCEEEEE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQTLLV  385 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~vIlV  385 (537)
                      +..+|+........+.+|||||+||+    .+|+++..... +.+++||  |+|+  .....++   +.+ +....+|++
T Consensus       363 L~~vGL~~l~l~r~~~tLSGGe~QRV----~LA~aL~~~p~-~~llILDEPT~~Ld~~~~~~L~~~l~~L-~~~G~TVIv  436 (842)
T 2vf7_A          363 LLHLGLGYLGLDRSTPTLSPGELQRL----RLATQLYSNLF-GVVYVLDEPSAGLHPADTEALLSALENL-KRGGNSLFV  436 (842)
T ss_dssp             HHHTTCTTSBTTCBGGGSCHHHHHHH----HHHHHTTTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEE
T ss_pred             HHhCCCCcCCccCCcCcCCHHHHHHH----HHHHHHhhCCC-CeEEEeeCccccCCHHHHHHHHHHHHHH-HHcCCEEEE
Confidence            34577765534566899999999999    99999986221 2699999  9999  2333333   344 444567888


Q ss_pred             EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304        386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~  417 (537)
                      + +|+++.+..++ ++.|      ++|+++..|++.++.
T Consensus       437 V-eHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~  474 (842)
T 2vf7_A          437 V-EHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK  474 (842)
T ss_dssp             E-CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred             E-cCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence            8 89998776555 7777      689999999888764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.44  E-value=1.1e-05  Score=87.87  Aligned_cols=81  Identities=11%  Similarity=0.200  Sum_probs=53.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+++|..|+|||||++.|.+..+. ...|+.+  +....+.++++..+.+||++|++.+...+...+..       
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~-------   75 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQV-------   75 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBS-------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHcc-------
Confidence            3467999999999999999999875431 1112111  11123334334688999999998776544433333       


Q ss_pred             CCCccceeeEEeecC
Q psy16304        272 RPDSRTCQVYLIMCG  286 (537)
Q Consensus       272 ~~~~~~~il~v~Ds~  286 (537)
                          ++.+++++|++
T Consensus        76 ----aD~vILVVDa~   86 (537)
T 3izy_P           76 ----TDIVILVVAAD   86 (537)
T ss_dssp             ----BSSCEEECBSS
T ss_pred             ----CCEEEEEEECC
Confidence                88999999943

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.43  E-value=0.00017  Score=77.54  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc------------------------------cccCceeeee----EEEEECCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII------------------------------SLVPTVGFNR----ARVEYGNK  240 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~------------------------------~~~Pt~G~t~----~~i~i~g~  240 (537)
                      +..+++++|..|+|||||++.|++....                              ......|+|.    ..+... +
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-R  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-S
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-C
Confidence            4568999999999999999999653100                              0011124332    123333 4


Q ss_pred             EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ..+.+||++|++++...+...+..           ++++++++|+
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~-----------aD~~llVvDa  144 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQ-----------ADMAILCVDC  144 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTT-----------CSEEEEEEEC
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhh-----------CCEEEEEEEC
Confidence            889999999999888766666665           8999999993

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.42  E-value=2.6e-05  Score=71.98  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..+|..++|+||||+|||||++.+++.    ..|..|
T Consensus        35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~----~~~~~g   67 (180)
T 3ec2_A           35 PEEGKGLTFVGSPGVGKTHLAVATLKA----IYEKKG   67 (180)
T ss_dssp             GGGCCEEEECCSSSSSHHHHHHHHHHH----HHHHSC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHH----HHHHcC
Confidence            446899999999999999999999998    766777

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.42  E-value=3.4e-05  Score=81.52  Aligned_cols=32  Identities=31%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .+|..++|+||||||||||+++|.|.    +.|+.|
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~----l~~~~g  196 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQE----LNSSER  196 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH----HCCTTS
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhh----cCCCCC
Confidence            57899999999999999999999998    888888

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.42  E-value=4.9e-05  Score=71.47  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|++.+..+|..+++..+++++|+
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   88 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   88 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEE
Confidence            3567899999999999999999887 333444444221 1222232 258889999999888888888899999999999


Q ss_pred             eCCCcchhhhhh-hhhh--c---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYLM--S---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~ll--~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++... .|+.  .   .+.++...+|| |+.
T Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  126 (212)
T 2j0v_A           89 SLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  126 (212)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence            999988777654 3322  1   26677777777 764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.41  E-value=0.00021  Score=76.35  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=53.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC--CCcc----------------------c------cCceeeee----EEEEECCcE
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE--PIIS----------------------L------VPTVGFNR----ARVEYGNKY  241 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~--~~~~----------------------~------~Pt~G~t~----~~i~i~g~~  241 (537)
                      ..+++++|..|+|||||++.|++.  .+..                      .      ....|+|.    ..+... +.
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~-~~   85 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-KY   85 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-SE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-Cc
Confidence            357999999999999999999753  0100                      0      00123322    234444 48


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      .+.+||++|++++...+...+..           ++++++++|+.
T Consensus        86 ~~~iiDtPGh~~f~~~~~~~~~~-----------aD~~ilVvda~  119 (458)
T 1f60_A           86 QVTVIDAPGHRDFIKNMITGTSQ-----------ADCAILIIAGG  119 (458)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSC-----------CSEEEEEEECS
T ss_pred             eEEEEECCCcHHHHHHHHhhhhh-----------CCEEEEEEeCC
Confidence            89999999998877655444443           89999999943

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.40  E-value=7.2e-05  Score=71.03  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|..++|+||||||||||++.|++.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            37999999999999999999999998

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.39  E-value=5.4e-05  Score=68.90  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+...|..+++..+++++|+
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   87 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   87 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEE
Confidence            4568899999999999999999877 333444443211 1122122 245669999999888888888889999999999


Q ss_pred             eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+. .|+  +.   .+.++...+|| |+.
T Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  125 (182)
T 3bwd_D           88 SLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR  125 (182)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence            999988877654 232  22   35667777777 763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.39  E-value=0.0003  Score=74.49  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC---cc----------ccCc-------------------eeeeeE----EEEECC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI---IS----------LVPT-------------------VGFNRA----RVEYGN  239 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~---~~----------~~Pt-------------------~G~t~~----~i~i~g  239 (537)
                      ..+++++|..|+|||||++.|++...   ..          ..++                   .|+|.+    .+... 
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~-  102 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA-  102 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS-
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC-
Confidence            35799999999999999999975421   00          0111                   122221    12223 


Q ss_pred             cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        240 KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       240 ~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      +..+.+||++|++++...+...+..           ++++++++|+.
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~-----------aD~~ilVvDa~  138 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGAST-----------CDLAIILVDAR  138 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTT-----------CSEEEEEEETT
T ss_pred             CceEEEEECCChHHHHHHHHHHHhh-----------CCEEEEEEECC
Confidence            4889999999999887665555554           89999999943

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.39  E-value=5.7e-05  Score=69.60  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=24.3

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +...+| ..+|+|+||||||||+.+|.+.
T Consensus        22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           22 IPFSKG-FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            445567 8999999999999999999886

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.37  E-value=8.7e-05  Score=67.60  Aligned_cols=107  Identities=20%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+|
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   85 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFS   85 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEE
Confidence            457899999999999999998776 22233333311 11222232 2567799999998888888888889999999999


Q ss_pred             CCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      ..+..++.... .|+  +.   .+.++...+|| |+.
T Consensus        86 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  122 (186)
T 1mh1_A           86 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR  122 (186)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred             CCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence            99988777654 232  11   26667777777 763

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.37  E-value=0.00036  Score=71.25  Aligned_cols=108  Identities=19%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHh------------------------------------------------------------
Q psy16304        198 PILVLGLDNAGKSSIIKRIL------------------------------------------------------------  217 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~------------------------------------------------------------  217 (537)
                      ++.|+|..+|||||++|.+-                                                            
T Consensus         9 klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~~~~~~~~   88 (327)
T 3ohm_A            9 KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK   88 (327)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHHHTCCGGG
T ss_pred             eEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHhcccccc


Q ss_pred             -------------------------------------------------CCCCcc-------ccCceeeeeEEEEECCcE
Q psy16304        218 -------------------------------------------------GEPIIS-------LVPTVGFNRARVEYGNKY  241 (537)
Q Consensus       218 -------------------------------------------------G~~~~~-------~~Pt~G~t~~~i~i~g~~  241 (537)
                                                                       ..-..+       ..||.|+....+.+.+ +
T Consensus        89 ~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~~~~~~-v  167 (327)
T 3ohm_A           89 VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQS-V  167 (327)
T ss_dssp             CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEEEEEETT-E
T ss_pred             cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEEEEEeec-e


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-c-------CcccccCCcccccccCcC-CccccCCcc
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-C-------GVHQVSGIPDELTSATHL-PLVDFRSVP  312 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s-------~~~~~~~l~~~l~~~~~l-~~~~~~~~~  312 (537)
                      .+.+||++|++.+|..|..++..           ++++++|+| +       +......+.+.+.++..+ ........+
T Consensus       168 ~l~iwDtgGQe~~R~~w~~yf~~-----------~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          168 IFRMVDVGGQRSERRKWIHCFEN-----------VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEEECCSHHHHTTGGGGCSS-----------CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             eeEEEEcCCchhHHHHHHHHhCC-----------CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce


Q ss_pred             EEEec
Q psy16304        313 ILVLG  317 (537)
Q Consensus       313 L~llG  317 (537)
                      +.++|
T Consensus       237 iiL~~  241 (327)
T 3ohm_A          237 VILFL  241 (327)
T ss_dssp             EEEEE
T ss_pred             EEEEE

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.37  E-value=7.1e-05  Score=70.40  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|+.++|+|+|||||||++++|++.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            347999999999999999999999987

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.37  E-value=8.1e-05  Score=68.83  Aligned_cols=108  Identities=20%  Similarity=0.269  Sum_probs=76.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   97 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   97 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence            3567899999999999999999886 333344443221 1222232 267889999999888888888889999999999


Q ss_pred             eCCCcchhhhhh-hhhh---c--CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYLM---S--CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~ll---~--~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+. .|+.   +  .+.++...+|| |+.
T Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (194)
T 2atx_A           98 SVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR  135 (194)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence            999988776654 3321   1  25667777777 763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.36  E-value=0.00023  Score=65.36  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=64.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|++
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d  101 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA  101 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEE
Confidence            5678999999999999999998762 2222222211 11222232 2568899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhhh-------cCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl  416 (537)
                      ..+..++..+..|+.       ..+.++....|| |+
T Consensus       102 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  138 (190)
T 3con_A          102 INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL  138 (190)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             CcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence            998877665542221       135666677777 66

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.36  E-value=0.00023  Score=62.99  Aligned_cols=107  Identities=21%  Similarity=0.285  Sum_probs=73.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.....+..+++..+++++|++
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   83 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   83 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEE
Confidence            3577999999999999999998763 2222333211 11222232 2567899999998888888899999999999999


Q ss_pred             CCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....|+.       ..+.++....|| |+.
T Consensus        84 ~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~  121 (166)
T 2ce2_X           84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA  121 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence            988877665542221       125666677777 663

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.35  E-value=8.9e-05  Score=69.66  Aligned_cols=108  Identities=21%  Similarity=0.281  Sum_probs=73.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce-eeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++... ...++.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  104 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF  104 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEE
Confidence            456889999999999999999988732 2233333211 1122232 257889999999888778888888999999999


Q ss_pred             eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++... .|+  +.   .+.++....|| |+.
T Consensus       105 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  142 (207)
T 2fv8_A          105 SVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR  142 (207)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence            999887776652 222  11   26667777777 763

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.35  E-value=8.7e-05  Score=69.75  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCc-eeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ....+.++|..++||+++++.|.++.. ....++.+ .....+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  108 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  108 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            346788999999999999988887662 22223332 1122222232 25666999999988888888899999999999


Q ss_pred             EeCCCcchhhhhh-hhhh--c---CCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQ-VYLM--S---CNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll--~---~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++... .|+.  .   .+.++...+|| |+.
T Consensus       109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  147 (204)
T 4gzl_A          109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR  147 (204)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence            9999988887764 2321  1   36677777777 764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.35  E-value=0.00037  Score=62.89  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce-eeecc--cccccceeccCCceEEEEEecCchhhH------HHHHHHHHh--cC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPT--VGFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLG--TV  379 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~t--i~la~all~~~e~p~lllLDT~Gl~~~------~~l~~~~~~--~~  379 (537)
                      ..+.++|.+++||+++++.|.++... ...++  .......+..++ ..+.+|||+|+..+      ..+...|++  ..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   82 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIINEKP   82 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence            35779999999999999999986521 11111  122222333344 78999999998543      244566664  67


Q ss_pred             CEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +++++|+|..+.......-..+.+.+.++...+|| |+.
T Consensus        83 ~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           83 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA  121 (165)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred             CEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence            89999998877543322222233457778888888 763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.34  E-value=6.2e-05  Score=68.20  Aligned_cols=106  Identities=14%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             CccEEEeccCccCccchhhhhcCCCcee-eeccc--ccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTV--GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqr-vs~ti--~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.... ..++.  .+....+..++ ..+.+|||+|.+.+..++..+++..+++++|+
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   86 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRARGAQVTDIVILVV   86 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEE
Confidence            4567899999999999999999887322 11111  22233344455 78999999999777777777777888999999


Q ss_pred             eCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                      |..+........  ..+...+.++....|| |+
T Consensus        87 d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl  119 (178)
T 2lkc_A           87 AADDGVMPQTVEAINHAKAANVPIIVAINKMDK  119 (178)
T ss_dssp             ETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTS
T ss_pred             ECCCCCcHHHHHHHHHHHhCCCCEEEEEECccC
Confidence            887743333222  2222345666666777 66

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.34  E-value=0.00027  Score=79.36  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=54.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhC---CCC--c---------cc-------cCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILG---EPI--I---------SL-------VPTVGFNRARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G---~~~--~---------~~-------~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                      -.+++|+|..|+|||||++.|.+   ...  .         ..       ..|.+.....+.+.+ ..+.+||++|+.++
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df   88 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG-HRVNIIDTPGHVDF   88 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT-EEEEEECCCCCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC-eeEEEEECcCCcch
Confidence            45799999999999999999983   210  0         00       011111123455665 99999999999888


Q ss_pred             hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ...+...+..           ++++++++|
T Consensus        89 ~~~~~~~l~~-----------aD~~llVvD  107 (693)
T 2xex_A           89 TVEVERSLRV-----------LDGAVTVLD  107 (693)
T ss_dssp             CHHHHHHHHH-----------CSEEEEEEE
T ss_pred             HHHHHHHHHH-----------CCEEEEEEC
Confidence            7777677766           899999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.33  E-value=6.1e-05  Score=69.94  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      |+.++|+|+||||||||++.|++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            57899999999999999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.33  E-value=0.00041  Score=66.19  Aligned_cols=108  Identities=13%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCce--eeecccccc--cceeccCC-ceEEEEEecCchhh-HHHHHHHHHhcCCEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTL  383 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rq--rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~-~~~l~~~~~~~~~~vI  383 (537)
                      ...+.++|.+++||+++++.|.++...  ...++.+..  ...+..++ ...+.+|||+|.+. ...++..|++.+++.+
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i  116 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL  116 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence            356889999999999999999875531  111222211  22233343 24678999999865 3444566677789999


Q ss_pred             EEEeCCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        384 LVSHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       384 lVvdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      +|++..+..+++.+..|.   .+    .+.++...+|| |+.
T Consensus       117 lVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~  158 (211)
T 2g3y_A          117 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV  158 (211)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence            999999998888766332   21    36778888888 774

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.33  E-value=0.00011  Score=68.67  Aligned_cols=108  Identities=20%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  104 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF  104 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEE
Confidence            45678999999999999999998873 22333333221 1222232 257889999999888888888888999999999


Q ss_pred             eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++... .|+  +.   .+.++....|| |+.
T Consensus       105 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  142 (201)
T 2gco_A          105 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  142 (201)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence            999888777663 222  11   26667777777 763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.31  E-value=0.00017  Score=77.18  Aligned_cols=80  Identities=23%  Similarity=0.141  Sum_probs=44.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC--Cc----------------------cc------cCceeeee----EEEEECCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP--II----------------------SL------VPTVGFNR----ARVEYGNK  240 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~~----------------------~~------~Pt~G~t~----~~i~i~g~  240 (537)
                      +..+++++|..|+|||||++.|.+..  +.                      ..      ....|+|.    ..+.+++ 
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-  120 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  120 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-
Confidence            34679999999999999999986310  00                      00      00123322    2344454 


Q ss_pred             EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ..+.+||++|++++...+...+..           ++++++++|+.
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~-----------aD~~ilVvDa~  155 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQ-----------ADIGVLVISAR  155 (467)
T ss_dssp             EEEEECCCCC-----------TTS-----------CSEEEEEEECS
T ss_pred             eEEEEEECCCcHHHHHHHHhhccc-----------CCEEEEEEeCC
Confidence            899999999998776544333333           89999999943

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.30  E-value=0.00056  Score=68.92  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=71.3

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhh--------HHHHHHHHHhcC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSED--------FRTIWKQYLGTV  379 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~--------~~~l~~~~~~~~  379 (537)
                      .+.++|.+++||+++++.|.|.....+++..+.++.    .+..++ ..+.+|||+|+..        +......+++..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a   87 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-RQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   87 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-cEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence            467999999999999999998875544333333322    233344 8999999999843        445556778889


Q ss_pred             CEEEEEEeCCCcchhhhhhh--hhhcC--CcEEEEeccc-chh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQV--YLMSC--NCQVYLISAK-NLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~i--~ll~~--G~ii~~g~nk-dl~  417 (537)
                      +++++|+|.++........+  .+-+.  +.++....|| |+.
T Consensus        88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA  130 (301)
T ss_dssp             SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence            99999999887644332222  12222  6777777888 763

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.29  E-value=7e-06  Score=79.73  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN  239 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g  239 (537)
                      ++++|+||||||||||+++|+|.    ..|+.|    .|.++|
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~----~~~~~G----~i~~~g   62 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTA----LIPDLT----LLHFRN   62 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHH----HSCCTT----TC----
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc----cccCCC----eEEECC
Confidence            67899999999999999999999    899999    777665

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.28  E-value=0.00026  Score=66.76  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCCcee----eecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhc----CCE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT----VSQ  381 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqr----vs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~----~~~  381 (537)
                      ...+.++|..++||+++++.|.++....    ..++.+..  .   .. ..+.+|||+|++.++..|..+++.    .++
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--~---~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   85 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--Y---DG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   85 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--G---GG-SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--e---eC-ceEEEEECCCcHHHHHHHHHHHHhccccCCE
Confidence            4567899999999999999999887332    21222211  1   22 579999999998888888888776    689


Q ss_pred             EEEEEeCC-Ccchhhhhhhhhh----------cCCcEEEEeccc-chhh
Q psy16304        382 TLLVSHSL-SGRPDDRCQVYLM----------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       382 vIlVvdsh-d~~~~~~~~i~ll----------~~G~ii~~g~nk-dl~~  418 (537)
                      +++|+|.. +...+.....++.          ..+.++....|| |+..
T Consensus        86 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            99999988 6666655442221          146677777787 7743

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.28  E-value=0.0002  Score=80.49  Aligned_cols=27  Identities=33%  Similarity=0.573  Sum_probs=24.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      .+.+|+|+|..|||||||+|.|+|..+
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~   94 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENL   94 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            578899999999999999999999765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.27  E-value=0.00028  Score=69.99  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=75.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhhHH----------HHHHHHH
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFR----------TIWKQYL  376 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~~~----------~l~~~~~  376 (537)
                      ..+.++|.+++||+++++.|.|.. +.+....+.+..    .+..++ .++.+|||+|...+.          .+++.|+
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            457799999999999999999876 455444443322    233344 689999999974322          3455554


Q ss_pred             --hcCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304        377 --GTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN  418 (537)
Q Consensus       377 --~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~  418 (537)
                        +..+++++|+|..+.........++.+.+.++....|+ |+..
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE  126 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence              57899999999888665555556666778888888888 7643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.27  E-value=0.0003  Score=72.42  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=23.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      ..+|+++|.+|||||||++.|+|.++
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~   56 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDF   56 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCc
Confidence            45799999999999999999999865

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.26  E-value=0.00029  Score=69.26  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=76.3

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH----------HHHHHHH-
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR----------TIWKQYL-  376 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~----------~l~~~~~-  376 (537)
                      .+.++|.+++||+++++.|.|.. +.+....+.+    ...+..++ ..+.++||+|.....          .+++.|+ 
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            46789999999999999999875 4443333333    22333354 789999999984332          2556777 


Q ss_pred             -hcCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304        377 -GTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN  418 (537)
Q Consensus       377 -~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~  418 (537)
                       +..+++++|+|..+.........++.+.+.++....|+ |+..
T Consensus        81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAE  124 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred             hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence             77899999999988766555557777788888888888 7643

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.22  E-value=8.8e-05  Score=67.10  Aligned_cols=71  Identities=13%  Similarity=0.106  Sum_probs=44.0

Q ss_pred             cchhhhhcCCCceeeecccccc------cceeccCCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCc
Q psy16304        324 SSIIKRILGEPIISLVPTVGFN------RARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSG  391 (537)
Q Consensus       324 s~li~~LSgG~rqrvs~ti~la------~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~  391 (537)
                      ...+.+|||||+|++    +++      ++++. +  |+++++|  |+|++...  .+++.+.+  ..+.+++++ +|+.
T Consensus        52 ~~~~~~LSgGe~qrv----~lA~~Lalaral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv-sH~~  123 (148)
T 1f2t_B           52 ERPLTFLSGGERIAL----GLAFRLAMSLYLAG-E--ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV-SHDE  123 (148)
T ss_dssp             EECGGGSCHHHHHHH----HHHHHHHHHHHHHS-S--CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEE-ESCG
T ss_pred             cCChhHCCHHHHHHH----HHHhhhHHHHHHcC-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEE-EChH
Confidence            445889999999999    554      56664 4  8999999  99994332  23333222  123456666 7887


Q ss_pred             chhhhhh-hhhh
Q psy16304        392 RPDDRCQ-VYLM  402 (537)
Q Consensus       392 ~~~~~~~-i~ll  402 (537)
                      .....++ ++++
T Consensus       124 ~~~~~~d~ii~l  135 (148)
T 1f2t_B          124 ELKDAADHVIRI  135 (148)
T ss_dssp             GGGGGCSEEEEE
T ss_pred             HHHHhCCEEEEE
Confidence            4333333 5555

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.21  E-value=0.00011  Score=70.72  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|.+++|+|+|||||||++++|.|.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999999985

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.21  E-value=0.00083  Score=61.19  Aligned_cols=105  Identities=16%  Similarity=0.361  Sum_probs=69.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhh----HH-----HHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSED----FR-----TIWKQYL  376 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~----~~-----~l~~~~~  376 (537)
                      ...+.++|.+++||+++++.|.++....+.+..+.+    ...+..++ .++.+|||+|++.    ..     ..| .++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAW-QEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHH-HHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHH-HHH
Confidence            345789999999999999999988744333332322    23344454 6789999999832    11     122 356


Q ss_pred             hcCCEEEEEEeCCCcchhhhhh--hhhhc---CCcEEEEeccc-ch
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMS---CNCQVYLISAK-NL  416 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~---~G~ii~~g~nk-dl  416 (537)
                      +..+++++|+|.++..+++...  ..+.+   .+.++....|| |+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  127 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI  127 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccC
Confidence            7889999999998877655332  11121   35667777777 65

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.20  E-value=0.00075  Score=70.86  Aligned_cols=80  Identities=23%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCc----cccC--ce--eeeeEEEEE-------------C--C-----cEEEEEee
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPII----SLVP--TV--GFNRARVEY-------------G--N-----KYEVFLYD  247 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~----~~~P--t~--G~t~~~i~i-------------~--g-----~~~i~~~D  247 (537)
                      -.+++++|..|+|||||++.|+|....    ...+  |.  |+....+..             +  +     ...+.+||
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            357999999999999999999975321    1111  22  222222211             1  1     26899999


Q ss_pred             cCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        248 LGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       248 ~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ++|++++...+......           ++.+++++|+.
T Consensus        90 tPGh~~f~~~~~~~~~~-----------~D~~ilVvda~  117 (410)
T 1kk1_A           90 APGHEALMTTMLAGASL-----------MDGAILVIAAN  117 (410)
T ss_dssp             CSSHHHHHHHHHHCGGG-----------CSEEEEEEETT
T ss_pred             CCChHHHHHHHHhhhhh-----------CCEEEEEEECC
Confidence            99998776444333333           79999999943

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.18  E-value=0.0011  Score=67.00  Aligned_cols=105  Identities=21%  Similarity=0.320  Sum_probs=74.7

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccC-CceEEEEEecCchh----------hHHHHHHHHH
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYG-NKYEVFLYDLGGSE----------DFRTIWKQYL  376 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~-e~p~lllLDT~Gl~----------~~~~l~~~~~  376 (537)
                      .+.++|.+++||+++++.|.|.....+++..+.++.    ....+ + ..+.++||+|+.          .+...+..++
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l   90 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL   90 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-CeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence            466899999999999999998876555554444433    23333 4 899999999982          3445667788


Q ss_pred             hcCCEEEEEEeCCCcchhhhhhhh---hhcCCcEEEEeccc-chh
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQVY---LMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~i~---ll~~G~ii~~g~nk-dl~  417 (537)
                      +..+++++|+|.++.........|   +...+.++....|| |+.
T Consensus        91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           91 EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred             hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence            899999999999887665544432   22345667777777 763

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.17  E-value=0.00082  Score=70.53  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccc----cC--ce--eeeeEEEEE-------------C--C-----cEEEEEe
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISL----VP--TV--GFNRARVEY-------------G--N-----KYEVFLY  246 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~----~P--t~--G~t~~~i~i-------------~--g-----~~~i~~~  246 (537)
                      +-.+++++|..++|||||++.|+|......    .+  |.  |+....+..             +  +     ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            456799999999999999999997532111    11  22  222222221             1  1     2689999


Q ss_pred             ecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        247 DLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       247 D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      |++|++++...+.....           .++.+++++|++
T Consensus        87 DtPGh~~f~~~~~~~~~-----------~~D~~ilVvda~  115 (408)
T 1s0u_A           87 DSPGHETLMATMLSGAS-----------LMDGAILVIAAN  115 (408)
T ss_dssp             ECSSHHHHHHHHHTTCS-----------CCSEEEEEEETT
T ss_pred             ECCCHHHHHHHHHHhHh-----------hCCEEEEEEECC
Confidence            99999877643333222           278999999943

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.16  E-value=0.00013  Score=68.84  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=28.7

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ..+|.+++|+|++||||||+++.|.+.    +.+..|
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~----~~~~~~   51 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT----LREQGI   51 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH----HHHTTC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH----HhhcCC
Confidence            347899999999999999999999997    666666

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.16  E-value=0.0019  Score=61.52  Aligned_cols=107  Identities=13%  Similarity=0.028  Sum_probs=67.2

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeeccccccc----ceeccCCceEEEEEecCch------hhH---HHHHHHH
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGS------EDF---RTIWKQY  375 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~----all~~~e~p~lllLDT~Gl------~~~---~~l~~~~  375 (537)
                      ....+.++|..++||+++++.|.++... ..+....+.    ..+..++ ..+.+|||+|+      +..   ...+..+
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  105 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLLDRAFENRNTIEMTTITAL  105 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETT-EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCC-CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence            3456889999999999999999988743 222212222    2222233 68999999998      321   2234556


Q ss_pred             HhcCCEEEEEEeCCCcchhhhhh--hh---hhc--CCcEEEEeccc-chh
Q psy16304        376 LGTVSQTLLVSHSLSGRPDDRCQ--VY---LMS--CNCQVYLISAK-NLS  417 (537)
Q Consensus       376 ~~~~~~vIlVvdshd~~~~~~~~--i~---ll~--~G~ii~~g~nk-dl~  417 (537)
                      ....+++++|+|..+..++....  .+   +..  .+.++....|| |+.
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~  155 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC  155 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence            67778999999998876654211  11   122  26667777777 763

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.15  E-value=0.00013  Score=68.67  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=29.3

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +...+|+.++|+|+|||||||+.+.|++.    +. ..|
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~----l~-~~G   53 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQM----LY-QKG   53 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHH----HH-HTT
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHH----HH-hcC
Confidence            44568999999999999999999999997    55 566

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.14  E-value=0.0002  Score=67.95  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|..++|+||+|||||||++.|.+.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            347999999999999999999999975

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.13  E-value=0.00018  Score=65.69  Aligned_cols=26  Identities=15%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|..++|+|+|||||||+.+.|.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            46899999999999999999999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.00023  Score=66.78  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=23.8

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++++...+|.+++|+|++||||||+.+.|++.
T Consensus        16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             --------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            456677788999999999999999999999875

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.11  E-value=0.00049  Score=73.86  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhhHHHHHHH--------HHh
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQ--------YLG  377 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~~~~l~~~--------~~~  377 (537)
                      ...+.++|.+++||+++++.|.+.....+.+..++++.    .+..++ .++.+|||+|++.....++.        +++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC--------------------CCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            45688999999999999999999876666555454443    234455 88999999999766655543        456


Q ss_pred             cCCEEEEEEeCCCcchhhhh---hhhh-hcCCcEEEEeccc-chh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRC---QVYL-MSCNCQVYLISAK-NLS  417 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~---~i~l-l~~G~ii~~g~nk-dl~  417 (537)
                      .++.+++|+|..+..+.+..   ..++ .-.+.++....|| |+.
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~  356 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA  356 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCC
Confidence            78999999999988766322   1111 1136777777888 763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.0001  Score=68.01  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhc----CCEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT----VSQTLL  384 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~----~~~vIl  384 (537)
                      ....+.++|..++||+++++.|.++............... .... ..+.+|||+|...+...|..++..    .+++++
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~  124 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF  124 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCC-TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-eecC-CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence            3456889999999999999999988732211111111111 1122 678899999997666666666554    689999


Q ss_pred             EEeCC-Ccchhhhhhhhhh----------cCCcEEEEeccc-chh
Q psy16304        385 VSHSL-SGRPDDRCQVYLM----------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       385 Vvdsh-d~~~~~~~~i~ll----------~~G~ii~~g~nk-dl~  417 (537)
                      |+|.. +...+.....|+.          ..+.++....|| |+.
T Consensus       125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A          125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  169 (193)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence            99988 6666655442221          136677777777 774

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.07  E-value=0.0005  Score=75.83  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC--Cc------------cccCceeeeeE----EEEE---CC-cEEEEEeecCCCchh
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP--II------------SLVPTVGFNRA----RVEY---GN-KYEVFLYDLGGSEDF  254 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~--~~------------~~~Pt~G~t~~----~i~i---~g-~~~i~~~D~~G~~~~  254 (537)
                      -.++|+|..|+|||||++.|....  ..            ....+.|+|..    .+.+   +| ++.+.+||++|+.++
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF   84 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF   84 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence            368999999999999999997421  00            01123454432    2333   22 478999999999998


Q ss_pred             hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ...+...+..           ++++++++|
T Consensus        85 ~~ev~~~l~~-----------aD~aILVVD  103 (599)
T 3cb4_D           85 SYEVSRSLAA-----------CEGALLVVD  103 (599)
T ss_dssp             HHHHHHHHHH-----------CSEEEEEEE
T ss_pred             HHHHHHHHHH-----------CCEEEEEEE
Confidence            8777777776           899999999

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.14  E-value=8.5e-05  Score=69.47  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=75.3

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCc-eeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ....+.++|..++||+++++.|.++.. ....++.+- ....+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  108 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC  108 (204)
Confidence            345678999999999999999998762 233333331 111222222 24566999999998888999999999999999


Q ss_pred             EeCCCcchhhhhh-hhhh--c-C--CcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQ-VYLM--S-C--NCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~ll--~-~--G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++... .|+.  . .  +.++...+|| |+.
T Consensus       109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  147 (204)
T 3th5_A          109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR  147 (204)
Confidence            9988888777654 3322  1 1  5566677777 663

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.07  E-value=0.00046  Score=80.69  Aligned_cols=81  Identities=15%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC-------C---c-----cccCceeeeeE--EEEEC-CcEEEEEeecCCCchhhH
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP-------I---I-----SLVPTVGFNRA--RVEYG-NKYEVFLYDLGGSEDFRT  256 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-------~---~-----~~~Pt~G~t~~--~i~i~-g~~~i~~~D~~G~~~~r~  256 (537)
                      +..+|+++|..|+|||||++.|++..       +   .     ....+.|+|.+  .+.+. ++..+.+||++|++++..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            34679999999999999999998630       0   0     11235565443  12232 248899999999988765


Q ss_pred             HHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        257 IWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       257 ~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      .+...+..           ++++++++|+.
T Consensus       375 ~mi~gas~-----------AD~aILVVDAt  393 (1289)
T 3avx_A          375 NMITGAAQ-----------MDGAILVVAAT  393 (1289)
T ss_dssp             HHHHTSCC-----------CSEEEEEEETT
T ss_pred             HHHHHHhh-----------CCEEEEEEcCC
Confidence            44444443           89999999943

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.07  E-value=0.0011  Score=74.43  Aligned_cols=80  Identities=18%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC--Cc---ccc---------C---ceeeee----EEEEECC------cEEEEEee
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP--II---SLV---------P---TVGFNR----ARVEYGN------KYEVFLYD  247 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~~---~~~---------P---t~G~t~----~~i~i~g------~~~i~~~D  247 (537)
                      +-.+++|+|..|+|||||++.|....  +.   ...         +   ..|+|.    ..+.+.+      .+.+.+||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            34679999999999999999995320  00   000         0   223222    2333332      28899999


Q ss_pred             cCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        248 LGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       248 ~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ++|+.++...+...+..           ++++++++|+
T Consensus        89 TPG~~df~~~~~~~l~~-----------aD~aIlVvDa  115 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRV-----------LDGAVMVYCA  115 (704)
T ss_pred             CCCccchHHHHHHHHHH-----------CCEEEEEEeC
Confidence            99999887777776666           8999999993

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.06  E-value=0.00017  Score=79.62  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCc-----cccCceeeeeEEEEE--------CCc-------EEEEEeecCCCchhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPII-----SLVPTVGFNRARVEY--------GNK-------YEVFLYDLGGSEDFR  255 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~~Pt~G~t~~~i~i--------~g~-------~~i~~~D~~G~~~~r  255 (537)
                      -.+++|+|..|+|||||++.|.+..+.     .+.++.|.+.-....        .++       ..+.+|||+|++++.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            467999999999999999999875322     123455522111100        011       258999999998776


Q ss_pred             HHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        256 TIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       256 ~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ..+...+.           .++++++++|+
T Consensus        85 ~~~~r~~~-----------~aD~aILVvDa  103 (594)
T 1g7s_A           85 TLRKRGGA-----------LADLAILIVDI  103 (594)
T ss_dssp             TSBCSSSB-----------SCSEEEEEEET
T ss_pred             HHHHHHHh-----------hCCEEEEEEEC
Confidence            44333322           38999999993

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.06  E-value=0.00022  Score=64.79  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|..++|+|++||||||+.++|++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.04  E-value=0.00073  Score=61.75  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=67.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce-eeeccc--ccccceeccCCceEEEEEecCchhhH------HHHHHHHHh--cC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTV--GFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLG--TV  379 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti--~la~all~~~e~p~lllLDT~Gl~~~------~~l~~~~~~--~~  379 (537)
                      ..+.++|..++||+++++.|.++... ...++.  ......+..++ ..+.+|||+|+..+      ..++..++.  ..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIINEKP   86 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccHHHHHHHHHHhccCC
Confidence            45779999999999999999987521 111111  12222333344 78999999998543      245666664  47


Q ss_pred             CEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~  417 (537)
                      +++++|+|..+..........+...+.++...+|| |+.
T Consensus        87 ~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  125 (188)
T 2wjg_A           87 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA  125 (188)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred             CEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence            88999997765433222222334456667777777 664

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.03  E-value=0.00068  Score=63.96  Aligned_cols=107  Identities=19%  Similarity=0.196  Sum_probs=71.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccce----ec-cCCceEEEEEecCch----------hhHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR----VE-YGNKYEVFLYDLGGS----------EDFRTIWK  373 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al----l~-~~e~p~lllLDT~Gl----------~~~~~l~~  373 (537)
                      ...+.++|..++||+++++.|.++. ...+..+.+.+...    +. .++ ..+.+|||+|.          +.+..++.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE-PVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS-CSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC-CcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            4567899999999999999999987 33444444433322    11 123 68999999994          45566777


Q ss_pred             HHHhc---CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        374 QYLGT---VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       374 ~~~~~---~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      .|++.   .+++++|+|..+........  .++...+.++....|| |+.
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL  157 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence            77776   44599999887754333222  3444456677777777 763

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.02  E-value=0.00063  Score=78.05  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC------------Cccc---cCceeee----eEEEEEC---------------CcEE
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP------------IISL---VPTVGFN----RARVEYG---------------NKYE  242 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~------------~~~~---~Pt~G~t----~~~i~i~---------------g~~~  242 (537)
                      .+++|+|..|+|||||++.|.+..            +...   ....|+|    ...+.+.               .+..
T Consensus        20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (842)
T 1n0u_A           20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   99 (842)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence            469999999999999999997531            1000   0011211    1123332               1588


Q ss_pred             EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        243 VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       243 i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +.+||++|+.++...+...+..           ++++++++|
T Consensus       100 i~liDTPG~~df~~~~~~~l~~-----------aD~ailVvD  130 (842)
T 1n0u_A          100 INLIDSPGHVDFSSEVTAALRV-----------TDGALVVVD  130 (842)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHT-----------CSEEEEEEE
T ss_pred             EEEEECcCchhhHHHHHHHHHh-----------CCEEEEEEe
Confidence            9999999999988777777776           899999999

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.02  E-value=0.00018  Score=74.18  Aligned_cols=31  Identities=23%  Similarity=0.141  Sum_probs=27.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ++.+++|+|++|||||||+|.|+|.    ..++.|
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~----~~~~~~  103 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM----LTERGH  103 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH----HHHTTC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH----hhhcCC
Confidence            4789999999999999999999997    666666

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.01  E-value=0.0012  Score=72.63  Aligned_cols=78  Identities=23%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCC--Cc------c------ccCceeeee----EEEEEC---C-cEEEEEeecCCCchh
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEP--II------S------LVPTVGFNR----ARVEYG---N-KYEVFLYDLGGSEDF  254 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~--~~------~------~~Pt~G~t~----~~i~i~---g-~~~i~~~D~~G~~~~  254 (537)
                      -.++|+|..|+|||||++.|.+..  ..      .      .....|+|.    -.+.+.   + .+.+.+||++|+.++
T Consensus         7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF   86 (600)
T 2ywe_A            7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF   86 (600)
T ss_dssp             EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence            368999999999999999996410  00      0      011234332    133332   2 378999999999998


Q ss_pred             hHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ...+...+..           ++++++++|+
T Consensus        87 ~~ev~r~l~~-----------aD~aILVVDa  106 (600)
T 2ywe_A           87 SYEVSRALAA-----------CEGALLLIDA  106 (600)
T ss_dssp             HHHHHHHHHT-----------CSEEEEEEET
T ss_pred             HHHHHHHHHh-----------CCEEEEEEEC
Confidence            8777776666           8999999993

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.01  E-value=0.00033  Score=67.06  Aligned_cols=26  Identities=15%  Similarity=0.033  Sum_probs=24.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +.+|+.++|+|+||||||||++.|++
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            44899999999999999999999998

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.00  E-value=6.3e-05  Score=74.01  Aligned_cols=32  Identities=13%  Similarity=0.120  Sum_probs=27.6

Q ss_pred             cccccCCC---CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        188 HLSLFDFR---SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       188 ~~~l~~~~---G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+++.+.+   |++++|+|++||||||+.++|++.
T Consensus        37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34566667   999999999999999999999875

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.97  E-value=9.4e-05  Score=79.87  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=51.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc-----cccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII-----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP  269 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~  269 (537)
                      +-.+++++|..|+|||||++.|.+..+.     +...+.|.  ..+.+++ ..+.+||++|++++...+....       
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~--~~v~~~~-~~i~~iDTPGhe~f~~~~~~~~-------   72 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA--YHVETEN-GMITFLDTPGHAAFTSMRARGA-------   72 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC--CCCCTTS-SCCCEECCCTTTCCTTSBCSSS-------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE--EEEEECC-EEEEEEECCCcHHHHHHHHHHH-------
Confidence            3467999999999999999999864221     11222231  1223333 6789999999987764333222       


Q ss_pred             CCCCCccceeeEEeecC
Q psy16304        270 LGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       270 ~l~~~~~~~il~v~Ds~  286 (537)
                          ..++.+++++|++
T Consensus        73 ----~~aD~aILVVda~   85 (501)
T 1zo1_I           73 ----QATDIVVLVVAAD   85 (501)
T ss_dssp             ----BSCSSEEEEEETT
T ss_pred             ----hhCCEEEEEeecc
Confidence                2388899999943

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.96  E-value=0.00047  Score=64.11  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceee--ecccccc--cceeccCC-ceEEEEEecCchhh-HHHHHHHHHhcCCEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFN--RARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrv--s~ti~la--~all~~~e-~p~lllLDT~Gl~~-~~~l~~~~~~~~~~vIl  384 (537)
                      ..+.++|.+++||+++++.|.++...-.  .++.+..  ...+..++ ...+.+|||.|.+. ...++..+++.+++.++
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~   86 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLI   86 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEE
Confidence            5678999999999999999986442111  1222211  12233343 24667899988854 33355777888899999


Q ss_pred             EEeCCCcchhhhhhhhh---h----cCCcEEEEeccc-ch
Q psy16304        385 VSHSLSGRPDDRCQVYL---M----SCNCQVYLISAK-NL  416 (537)
Q Consensus       385 Vvdshd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl  416 (537)
                      |+|..+..+++....|.   .    ..+.++...+|| |+
T Consensus        87 v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  126 (192)
T 2cjw_A           87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  126 (192)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence            99999998887765322   1    136677788888 66

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.93  E-value=0.0011  Score=65.02  Aligned_cols=106  Identities=22%  Similarity=0.340  Sum_probs=72.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH------HHHHHHH--hc
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR------TIWKQYL--GT  378 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~------~l~~~~~--~~  378 (537)
                      ..+.++|.+++||+++++.|.|+... +....+.+    ...+..++ ..+.+|||+|.....      .+.+.|+  ..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   83 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSIDEKIARDYLLKGD   83 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence            45779999999999999999987632 32222322    22333334 789999999984332      2335555  46


Q ss_pred             CCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN  418 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~  418 (537)
                      .+++++|+|..+..........+.+.+.++....|+ |+..
T Consensus        84 ~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           84 ADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAK  124 (258)
T ss_dssp             CSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred             CCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence            789999999888765544445556678888888888 7643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.92  E-value=0.00027  Score=73.40  Aligned_cols=58  Identities=29%  Similarity=0.347  Sum_probs=41.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC-----CCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE-----PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~-----~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      ++..++++|.+|+|||||+|.|.|.     ......+..|+|++...+.-+..+.++|++|..
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~  223 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII  223 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCC
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcC
Confidence            4568999999999999999999985     223334555666655544311236889999975

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.89  E-value=0.00057  Score=64.29  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.+|.+++|+|++||||||+.+.|.+.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3557899999999999999999999997

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.89  E-value=0.00029  Score=63.53  Aligned_cols=25  Identities=28%  Similarity=0.431  Sum_probs=24.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|+.++|+|+||+|||||++++++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999999997

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.88  E-value=0.00032  Score=70.59  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .+|.+++|+|+|||||||++..|++.    +.++.|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~----l~~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAI----SMLEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHH----HHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH----HHHhcC
Confidence            36899999999999999999999998    777777

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.87  E-value=0.00068  Score=72.88  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchh-hHH--------HHHHHHHh
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE-DFR--------TIWKQYLG  377 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~-~~~--------~l~~~~~~  377 (537)
                      ..+.++|.+++||+++++.|++.++..+....++++.    .+..++ .++.+|||+|+. ...        .....+++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~  322 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQEIE  322 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence            5678999999999999999999876656554444433    344455 789999999986 321        22345677


Q ss_pred             cCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~  417 (537)
                      .++++++|+|..+..+.+...++-.-.++++....|| |+.
T Consensus       323 ~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~  363 (482)
T 1xzp_A          323 KADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV  363 (482)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSC
T ss_pred             cccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccc
Confidence            8899999999888766554443222246667777777 763

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.86  E-value=0.00095  Score=66.27  Aligned_cols=105  Identities=19%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeeccccccc----ceeccCCceEEEEEecCchhhHH------HHHHHHHh--c
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLG--T  378 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~----all~~~e~p~lllLDT~Gl~~~~------~l~~~~~~--~  378 (537)
                      ..+.++|.+++||+++++.|.|+. +.+....+.+.    ..+.. + ..+.+|||+|+..+.      .+++.|+.  .
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~-~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-N-KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-C-TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-C-CeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            357799999999999999999875 33333223222    12222 3 689999999985443      45677765  5


Q ss_pred             CCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN  418 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~  418 (537)
                      .+++++|+|..+..........+.+.|.++....|+ |+..
T Consensus        81 ~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           81 ADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLD  121 (272)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred             CCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence            789999998887654444334556678888888888 7643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=96.85  E-value=0.00052  Score=68.85  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             CCccEEEeccCccCccchhhhhcCCC-ceeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ....+.++|..++||+++++.|.++. .....+|.+. ....+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            34568899999999999999988776 2233333331 122222233 24566999999988888888888999999999


Q ss_pred             EeCCCcchhhhhh-hhh---h--cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQ-VYL---M--SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~-i~l---l--~~G~ii~~g~nk-dl~  417 (537)
                      +|..+..+++.+. .|+   .  ..+.++...+|| |+.
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  272 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR  272 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence            9999988877654 222   1  136677777777 763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.83  E-value=0.00054  Score=69.36  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      +...+|.+++|+|+||+||||++..|++.    +.+..|
T Consensus        99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~----l~~~g~  133 (306)
T 1vma_A           99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKM----FVDEGK  133 (306)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHH----HHHTTC
T ss_pred             ccCCCCeEEEEEcCCCChHHHHHHHHHHH----HHhcCC
Confidence            34557899999999999999999999998    777666

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.82  E-value=0.00021  Score=78.87  Aligned_cols=78  Identities=23%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCcc------------------------------ccCceeeeeEE----EEECCcE
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIIS------------------------------LVPTVGFNRAR----VEYGNKY  241 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~------------------------------~~Pt~G~t~~~----i~i~g~~  241 (537)
                      -.+|+++|..|+|||||++.|.+.....                              .....|+|.+.    +... +.
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-~~  255 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-KK  255 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-Ce
Confidence            3569999999999999999995310000                              00123444322    2233 37


Q ss_pred             EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      .+.+||++|+.++...+...+.           .++++++++|+
T Consensus       256 ~i~iiDTPGh~~f~~~~~~~~~-----------~aD~alLVVDa  288 (592)
T 3mca_A          256 IYEIGDAPGHRDFISGMIAGAS-----------SADFAVLVVDS  288 (592)
T ss_dssp             ---CCEEESSSEEEEECCC------------------CCSEEEE
T ss_pred             EEEEEECCChHHHHHHHHHHHh-----------hCCEEEEEEEC
Confidence            8999999999866532222222           37888999993

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.80  E-value=0.0015  Score=60.71  Aligned_cols=107  Identities=20%  Similarity=0.347  Sum_probs=73.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.|+... ...++.+..  ...+..++ +..+.+|||+|.+.+..++..+++..+++++|+
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   85 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVY   85 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEE
Confidence            45679999999999999999998732 233343322  22233343 246778999999877777888888889999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++....|+-      ..+.++....++ |+.
T Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~  123 (199)
T 2f9l_A           86 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR  123 (199)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence            9888877766543321      235666666777 764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.78  E-value=0.00028  Score=77.07  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ...+|+.++|+|+||||||||+++|++.    +.|+.|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~----L~~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAAR----LMEMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHH----HHTTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHh----hcccCC
Confidence            3558999999999999999999999998    888775

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.77  E-value=0.00041  Score=72.26  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=28.4

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+++.+.+|..++|+||||+|||||+++|+|.
T Consensus       161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34566789999999999999999999999985

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.76  E-value=0.00037  Score=66.26  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.+++|+|++||||||+.+.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.71  E-value=0.00071  Score=70.20  Aligned_cols=59  Identities=27%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCC------CccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEP------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                      ++..++++|.+|+|||||+|.|.|..      .....+..|+|+....+.-+..+.++|++|...
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~  223 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIIN  223 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCC
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCc
Confidence            46789999999999999999999852      222456667666554432112378899999753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.70  E-value=0.0014  Score=72.01  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccC-ceeeeeEEEEE------CCcEEEEEeecCCCch
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVP-TVGFNRARVEY------GNKYEVFLYDLGGSED  253 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~P-t~G~t~~~i~i------~g~~~i~~~D~~G~~~  253 (537)
                      +-.+|+|+|++|+|||||+|.|+|.... .+.. +.+.|.....+      .++..+.++||+|...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3467999999999999999999997532 1111 11222224332      2347899999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.70  E-value=0.00054  Score=69.75  Aligned_cols=38  Identities=11%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      .+++...++.+++++|+||+||||++..|++.    +.+..|
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~----l~~~g~  134 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANY----YAELGY  134 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH----HHHTTC
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHH----HHHCCC
Confidence            34555678999999999999999999999998    777656

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.69  E-value=0.00075  Score=63.52  Aligned_cols=26  Identities=19%  Similarity=0.029  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +.+|+.++|+|+||+|||||++.|++
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999999997

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.69  E-value=0.0017  Score=63.89  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH------HHHHHHH--hc
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR------TIWKQYL--GT  378 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~------~l~~~~~--~~  378 (537)
                      ..+.++|.+++||+++++.|.|... .+....+.+    ...+..++ ..+.+|||+|...+.      .+++.|+  ..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            3567999999999999999998764 443333322    22333344 789999999983322      2566666  56


Q ss_pred             CCEEEEEEeCCCcchhhhhhhhhhcCC-cEEEEeccc-chh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQVYLMSCN-CQVYLISAK-NLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~i~ll~~G-~ii~~g~nk-dl~  417 (537)
                      .+++++|+|..+..........+.+.+ .++....|+ |+.
T Consensus        82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLL  122 (271)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred             CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence            789999998887543333334455566 777788888 764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=96.67  E-value=0.0012  Score=71.77  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=69.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--------eeccCC---ceEEEEEecCchhhHHHHHHHHHh
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--------RVEYGN---KYEVFLYDLGGSEDFRTIWKQYLG  377 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--------ll~~~e---~p~lllLDT~Gl~~~~~l~~~~~~  377 (537)
                      ...+.++|.+++||+++++.|+++. .....+|++....        .+..+.   ...+.+|||+|.+.+...+..+++
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~  120 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT  120 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence            4568899999999999999999887 3444455553322        121111   278999999999887778888898


Q ss_pred             cCCEEEEEEeCCCcchhhhhhhhhh--cCCcEEEEeccc-chh
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQVYLM--SCNCQVYLISAK-NLS  417 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~i~ll--~~G~ii~~g~nk-dl~  417 (537)
                      ..+++++|+|..+.+........+.  ..+.++...+|| |+.
T Consensus       121 ~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~  163 (535)
T 3dpu_A          121 RSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDEN  163 (535)
T ss_dssp             SSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence            9999999998766533332222222  234677777777 764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.66  E-value=0.00059  Score=70.57  Aligned_cols=31  Identities=16%  Similarity=0.091  Sum_probs=0.0

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ..+++...+| +++|+||||+||||++.+|.+
T Consensus        18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.64  E-value=0.0016  Score=59.35  Aligned_cols=103  Identities=17%  Similarity=0.286  Sum_probs=61.7

Q ss_pred             cEEEeccCccCccchhhhhcCCCce-eeecccccccceeccCCceEEEEEecCc-----------hhhHHHHHHHHHhc-
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNRARVEYGNKYEVFLYDLGG-----------SEDFRTIWKQYLGT-  378 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~all~~~e~p~lllLDT~G-----------l~~~~~l~~~~~~~-  378 (537)
                      .+.++|..++||+++++.|.++... ...++.......+..+   .+.+|||+|           .+.+...+..+++. 
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC---CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            4678999999999999999988621 1112222222222212   588999999           66777778777765 


Q ss_pred             CCEEEEEEeCCCcchhhhh-h---------------hhhhcCCcEEEEeccc-chh
Q psy16304        379 VSQTLLVSHSLSGRPDDRC-Q---------------VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~-~---------------i~ll~~G~ii~~g~nk-dl~  417 (537)
                      .++++++++..|..++... .               ..+...+.++....|| |+.
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI  135 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence            5544444444444444332 1               1112346667777777 663

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.62  E-value=0.00077  Score=65.50  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.0

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++.+.+|  ++|+||||+|||||+++|++.
T Consensus        45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           45 GARIPKG--VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             TCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            3445566  999999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.60  E-value=0.00088  Score=68.21  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..++||+|+||||||||+++|.+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999987

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.60  E-value=0.00098  Score=62.50  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++|+|++||||||+.++|++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999985

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.59  E-value=0.0019  Score=59.84  Aligned_cols=107  Identities=20%  Similarity=0.356  Sum_probs=73.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..+.++|..++||+++++.|.++.. ....+|.+.  ....+..++ +..+.+|||+|++.+..++..+++..++.++|+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~  109 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY  109 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence            4577999999999999999998874 333344442  222333343 245667999999777777788888888999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..+++.+..|+-      ..+.++....++ |+.
T Consensus       110 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~  147 (191)
T 1oix_A          110 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR  147 (191)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            9888877665543321      134556666666 663

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.51  E-value=0.0009  Score=70.65  Aligned_cols=66  Identities=11%  Similarity=0.002  Sum_probs=43.0

Q ss_pred             hhhhcCCCceeeecccccccceecc--CCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCcchhhhhh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEY--GNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ  398 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~--~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~~~~~~~~  398 (537)
                      +..|||||++++    +++.+++..  .+ |++++||  +++++...  .+++.+.+  ..+..++++ +|+......++
T Consensus       331 ~~~lS~Gq~~~~----~la~~la~~~~~~-~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~-th~~~~~~~~d  404 (430)
T 1w1w_A          331 MEYLSGGEKTVA----ALALLFAINSYQP-SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI-SLKNTMFEKSD  404 (430)
T ss_dssp             GGGSCHHHHHHH----HHHHHHHHHTSSC-CSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEE-CSCHHHHTTCS
T ss_pred             cccCCcchHHHH----HHHHHHHHhcCCC-CCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEE-ECCHHHHHhCC
Confidence            567999999999    888877642  23 8999999  99994332  22232222  124567777 78866554443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.51  E-value=0.001  Score=65.74  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++.+.+|  ++|+||||+|||||+++|++.
T Consensus        69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           69 GARIPKG--VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             TCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence            3445567  999999999999999999997

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.50  E-value=0.0079  Score=58.42  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceee--ec---ccccccceeccCCceEEEEEecCchhhH-----------HHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISL--VP---TVGFNRARVEYGNKYEVFLYDLGGSEDF-----------RTIWK  373 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv--s~---ti~la~all~~~e~p~lllLDT~Gl~~~-----------~~l~~  373 (537)
                      ...+.++|..++||+++++.|.++.....  .+   |.......+..++ ..+.+|||+|+...           ...+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~  100 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCYL  100 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999998763222  11   2222223333344 78999999998321           22223


Q ss_pred             HHHhcCCEEEEEEeCCC
Q psy16304        374 QYLGTVSQTLLVSHSLS  390 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd  390 (537)
                      .+++..+++++|+|..+
T Consensus       101 ~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A          101 LSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             HHTTCCSEEEEEEETTC
T ss_pred             hcCCCCcEEEEEEeCCC
Confidence            45677899999998875

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.50  E-value=0.00094  Score=66.06  Aligned_cols=27  Identities=15%  Similarity=0.123  Sum_probs=24.5

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.+|+.++|+|+||+|||||++.+++.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            348999999999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.49  E-value=0.0055  Score=58.81  Aligned_cols=83  Identities=19%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceee-----ecccccccceeccCCceEEEEEecCch-----------hhHHHHHH
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISL-----VPTVGFNRARVEYGNKYEVFLYDLGGS-----------EDFRTIWK  373 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv-----s~ti~la~all~~~e~p~lllLDT~Gl-----------~~~~~l~~  373 (537)
                      ...+.++|..++||+++++.|.|......     ..|.......+..++ ..+.+|||+|+           +.+...+.
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~  107 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFDTEVPNAETSKEIIRCIL  107 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999998874221     111122222333344 78999999995           22333333


Q ss_pred             HHHhcCCEEEEEEeCCCcch
Q psy16304        374 QYLGTVSQTLLVSHSLSGRP  393 (537)
Q Consensus       374 ~~~~~~~~vIlVvdshd~~~  393 (537)
                      .+....+++++|++..+...
T Consensus       108 ~~~~~~~~~l~v~d~~~~~~  127 (239)
T 3lxx_A          108 LTSPGPHALLLVVPLGRYTE  127 (239)
T ss_dssp             HTTTCCSEEEEEEETTCCSS
T ss_pred             hcCCCCcEEEEEeeCCCCCH
Confidence            44445689999998765443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.47  E-value=0.00077  Score=68.70  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..++|+||||+|||||+++|+|.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            77999999999999999999997

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.47  E-value=0.0014  Score=61.70  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=23.8

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|..++|+|++||||||+.+.|...
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            37889999999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.46  E-value=0.0012  Score=61.82  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|+|+|+|||||||+.+.|++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-09
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-09
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-08
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-09
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-09
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-06
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-09
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-08
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-08
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-08
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-08
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-06
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-07
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-07
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-07
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-04
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-06
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-06
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-05
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-06
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-04
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-04
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-04
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-04
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-04
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-04
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-04
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	7e-04
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	0.001
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.002
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.002
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	0.002
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.002
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.002
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.002
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.002
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.002
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	0.002
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	0.003
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.002
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.003
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	0.003
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
           IL++G    GKS ++ R +  +   S + T+G  F    V+  G K ++ ++D  G E F
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
           RTI   Y       +LV      R     + +  + N    
Sbjct: 65  RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 105

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
           IL++G    GKS ++ R +  +   S + T+G  F    V+  G K ++ ++D  G E F
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64

Query: 255 RTIWKQYL 262
           RTI   Y 
Sbjct: 65  RTITTAYY 72

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           +L+LG   +GKS+I+K++    I+ +V T G    + +        ++D+GG  D R  W
Sbjct: 9   LLLLGAGESGKSTIVKQMR---ILHVVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKW 64

Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317
            Q    V+        S    V       +++    +   S  +      R++ +++  
Sbjct: 65  IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR--WLRTISVILFL 121

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L+LG   +GKS+I+K++    I+ +V T G    + +        ++D+GG  D R  W
Sbjct: 9   LLLLGAGESGKSTIVKQMR---ILHVVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKW 64

Query: 373 KQYLGTVSQTLLV----SHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
            Q    V+  + V    S+++  R D++      + N    + + + L         ++ 
Sbjct: 65  IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 124

Query: 429 NISNFQIKNSSENLQD 444
           ++   ++      ++D
Sbjct: 125 DLLAEKVLAGKSKIED 140

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + + IL+LGLD AGK++I+ R+    +++  PT+GFN   + Y N  ++ ++DLGG    
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSI 74

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
           R  W+ Y    +  + V  S            L     +  L  A  L    K+ +    
Sbjct: 75  RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134

Query: 429 NISNFQIKNSSENLQDNN 446
           + S    + +   L+D +
Sbjct: 135 SASEVSKELNLVELKDRS 152

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)

Query: 190 SLFDF-----RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVF 244
           S+FD      + + IL+LGLD AGK++I+ R+    +++  PT+GFN   + Y N  ++ 
Sbjct: 6   SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLN 64

Query: 245 LYDLGGSEDFRTIWKQY 261
           ++DLGG    R  W+ Y
Sbjct: 65  VWDLGGQTSIRPYWRCY 81

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 10/177 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           +L +GL ++GK+ +  R+L         ++  + A  +  N     L  +         +
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG- 317
           +      S             V        +V  + + L       +    S  +L+   
Sbjct: 63  QLLDRFKSSA------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 116

Query: 318 ---LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
              +  A  + +I++ L + + +L  T     + ++  +     L   G   +F  +
Sbjct: 117 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQL 173

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L +GL ++GK+ +  R+L         ++  + A  +  N     L  +         +
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 254
           +L++G    GKS ++ R          + T+G  F    VE   K  ++ ++D  G E F
Sbjct: 9   LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           RTI   Y              R     +I+  V               +      +V  L
Sbjct: 69  RTITSSYY-------------RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 115

Query: 315 VLG 317
           ++G
Sbjct: 116 LVG 118

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (127), Expect = 9e-09
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 368
           +L++G    GKS ++ R          + T+G  F    VE   K  ++ ++D  G E F
Sbjct: 9   LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68

Query: 369 RTIWKQYLGTVSQTLLV 385
           RTI   Y       ++V
Sbjct: 69  RTITSSYYRGSHGIIIV 85

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R V IL+LG   +GKS+ +K++    I    PT G +    E        + D+GG    
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM--RIIHGQDPTKGIHEYDFE-IKNVPFKMVDVGGQRSE 57

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R  W +   +V+        S   QV +     ++++   +   +  +     F +V I+
Sbjct: 58  RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR--VFSNVSII 115

Query: 315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY 355
           +          + +++    I         +   +    K+
Sbjct: 116 LFLNK---TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 153

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 368
           +L++G    GK+ ++ R        + + T+G  F    +E   K  ++ ++D  G E F
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68

Query: 369 RTIWKQYLGTVSQTLLV 385
           RTI   Y       +LV
Sbjct: 69  RTITTAYYRGAMGIMLV 85

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 254
           +L++G    GK+ ++ R        + + T+G  F    +E   K  ++ ++D  G E F
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68

Query: 255 RTIWKQY 261
           RTI   Y
Sbjct: 69  RTITTAY 75

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
           I+++G    GK+ +++R   G        T+G  F    VE  G K ++ ++D  G E F
Sbjct: 8   IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
           R+I + Y  + +  +L               +L        
Sbjct: 68  RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 108

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
           I+++G    GK+ +++R   G        T+G  F    VE  G K ++ ++D  G E F
Sbjct: 8   IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R+I + Y              R+    ++   +               +       V  +
Sbjct: 68  RSITQSYY-------------RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 114

Query: 315 VLG 317
           ++G
Sbjct: 115 LVG 117

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R + +L+LGLDNAGK++I+K+  GE + ++ PT+GFN  +      +++ ++D+GG +  
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKSL 59

Query: 255 RTIWKQY 261
           R+ W+ Y
Sbjct: 60  RSYWRNY 66

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LGLDNAGK++I+K+  GE + ++ PT+GFN  +      +++ ++D+GG +  
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKSL 59

Query: 369 RTIWKQY 375
           R+ W+ Y
Sbjct: 60  RSYWRNY 66

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
            +F  + + IL+LGLD AGK++I+ ++     ++ +PTVGFN          +  ++D+G
Sbjct: 6   KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV-ETVTYKNVKFNVWDVG 64

Query: 250 GSEDFRTIWKQY 261
           G +  R +W+ Y
Sbjct: 65  GQDKIRPLWRHY 76

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + + IL+LGLD AGK++I+ ++     ++ +PTVGFN          +  ++D+GG +  
Sbjct: 11  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV-ETVTYKNVKFNVWDVGGQDKI 69

Query: 369 RTIWKQY 375
           R +W+ Y
Sbjct: 70  RPLWRHY 76

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF 368
           IL++G  + GK+S + R   +       +      +V+       + ++ ++D  G E +
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
           RTI   Y       +L+    +    +  Q +        +
Sbjct: 68  RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF 254
           IL++G  + GK+S + R   +       +      +V+       + ++ ++D  G E +
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67

Query: 255 RTIWKQYL 262
           RTI   Y 
Sbjct: 68  RTITTAYY 75

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 14/112 (12%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-----------GNKYEVF 358
           +L LG    GK++ + R    +     + TVG  F   RV Y             K  + 
Sbjct: 8   LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67

Query: 359 LYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYL 410
           L+D  G E FR++   +       LL+    S +     + ++       Y 
Sbjct: 68  LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 119

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 192 FDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY----------- 237
           +D+  + +L LG    GK++ + R    +     + TVG  F   RV Y           
Sbjct: 2   YDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 238 GNKYEVFLYDLGGSEDFRTIWKQYL 262
             K  + L+D  G E FR++   + 
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFF 85

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 1/138 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+GG E  
Sbjct: 14  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESL 72

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
           R+ W  Y       ++V  S         +  L        L  A  L    K+  ++  
Sbjct: 73  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 132

Query: 429 NISNFQIKNSSENLQDNN 446
            ++         +++D+ 
Sbjct: 133 TVAEISQFLKLTSIKDHQ 150

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
            LF+ +   ++++GLDNAGK++I+ +     ++   PT+G N   +   N     ++D+G
Sbjct: 9   RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIG 67

Query: 250 GSEDFRTIWKQY 261
           G E  R+ W  Y
Sbjct: 68  GQESLRSSWNTY 79

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+GG +  R +W
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISN 432
           + Y       + V  S      +  +  LM    +  L  A  L    K+   +  N + 
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121

Query: 433 FQIKNSSENLQDNN 446
              K    +L+  N
Sbjct: 122 ITDKLGLHSLRHRN 135

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           IL++GLD AGK++I+ ++    I++ +PT+GFN   VEY N     ++D+GG +  R +W
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61

Query: 259 KQY 261
           + Y
Sbjct: 62  RHY 64

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 21/94 (22%), Positives = 35/94 (37%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           +L LGLDNAGK++++  +  + + +L PT       +  GN         G  +  R   
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62

Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNC 406
             +        LV  +   R D+         N 
Sbjct: 63  DYFPEVNGIVFLVDAADPERFDEARVELDALFNI 96

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD 247
           +L LGLDNAGK++++  +  + + +L PT       +  GN        
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDL 51

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 368
           IL++G    GKSS++ R   +     +        +V+     GNK ++ ++D  G E F
Sbjct: 10  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
           RT+   Y       +LV          +   +L      
Sbjct: 70  RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 108

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 254
           IL++G    GKSS++ R   +     +        +V+     GNK ++ ++D  G E F
Sbjct: 10  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69

Query: 255 RTIWKQYL 262
           RT+   Y 
Sbjct: 70  RTLTPSYY 77

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
           I++ G  N+GK+S++  +  + +   V       +  +Y     V L D  G    R   
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSG-VTLVDFPGHVKLRYKL 63

Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLG 317
             YL T ++            +        +++   + L    +         + IL+  
Sbjct: 64  SDYLKTRAKFV-----KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118

Query: 318 ----LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 362
               L  A   S IK  L   I  ++     +   VE     E +  + 
Sbjct: 119 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENT 167

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
           I++ G  N+GK+S++  +  + +   V       +  +Y     V L D  G    R   
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSG-VTLVDFPGHVKLRYKL 63

Query: 373 KQYL 376
             YL
Sbjct: 64  SDYL 67

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R + +L+LG   +GKS+ IK++      S VPT G               + D+GG    
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPF-DLQSVIFRMVDVGGQRSE 58

Query: 255 RTIWKQY 261
           R  W   
Sbjct: 59  RRKWIHC 65

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + +L+LG   +GKS+ IK++      S VPT G               + D+GG    
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPF-DLQSVIFRMVDVGGQRSE 58

Query: 369 RTIWKQY 375
           R  W   
Sbjct: 59  RRKWIHC 65

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 199 ILVLGLDNAGKSSIIKRILG-----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253
           ++++G    GK+ ++ R           IS V     N+     G K ++ ++D  G E 
Sbjct: 9   VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68

Query: 254 FRTIWKQY 261
           FR++   Y
Sbjct: 69  FRSVTHAY 76

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 313 ILVLGLDNAGKSSIIKRILG-----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
           ++++G    GK+ ++ R           IS V     N+     G K ++ ++D  G E 
Sbjct: 9   VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68

Query: 368 FRTIWKQY 375
           FR++   Y
Sbjct: 69  FRSVTHAY 76

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVF-LYDLGGSEDF 254
            LV+G    GKS ++ + + +           V F    +  G KY    ++D  G E F
Sbjct: 8   FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R++ + Y              R     L++  +             T   ++  +++ I+
Sbjct: 68  RSVTRSYY-------------RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII 114

Query: 315 VLG 317
           + G
Sbjct: 115 LCG 117

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVF-LYDLGGSEDF 368
            LV+G    GKS ++ + + +           V F    +  G KY    ++D  G E F
Sbjct: 8   FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
           R++ + Y    +  LLV    S    +    +L      
Sbjct: 68  RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 106

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           ++  ++ LGLDNAGK++++  +  + +   VPT+      +          +DLGG    
Sbjct: 12  KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT-FDLGGHIQA 70

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFK 421
           R +WK YL  ++  + +            +  L S      + +   L  G K
Sbjct: 71  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 123

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 189 LSLFDF--RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 246
           L       ++  ++ LGLDNAGK++++  +  + +   VPT+      +          +
Sbjct: 4   LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT-F 62

Query: 247 DLGGSEDFRTIWKQY 261
           DLGG    R +WK Y
Sbjct: 63  DLGGHIQARRVWKNY 77

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R V +L+LG   +GKS+I+K++            G       + + +    +D+GG    
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKM-FDVGGQRSE 55

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R  W      V+        S    V      ++++          +      F    I+
Sbjct: 56  RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD--SICNNKWFTDTSII 113

Query: 315 VLG 317
           +  
Sbjct: 114 LFL 116

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R V +L+LG   +GKS+I+K++            G       + + +    +D+GG    
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKM-FDVGGQRSE 55

Query: 369 RTIWKQYLGTVSQTLLVSHS 388
           R  W      V+  +     
Sbjct: 56  RKKWIHCFEGVTAIIFCVAL 75

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           + V IL+LGLDNAGK++++K++  E I  + PT GFN  +      +++ ++D+GG    
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI-KSVQSQGFKLNVWDIGGQRKI 73

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
           R  W+ Y       + V  S   +  +     L     +  L     L    K+      
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 429 NISNFQIKNSSENLQDNN 446
             S      +   ++D  
Sbjct: 134 PASEIAEGLNLHTIRDRV 151

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 19/147 (12%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           + V IL+LGLDNAGK++++K++  E I  + PT GFN  +      +++ ++D+GG    
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI-KSVQSQGFKLNVWDIGGQRKI 73

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVDFRSVPI 313
           R  W+ Y                  + + +          +     T L        VP+
Sbjct: 74  RPYWRSYF-------------ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120

Query: 314 LVLG----LDNAGKSSIIKRILGEPII 336
           L+      L  A  +S I   L    I
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTI 147

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 310 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGS 365
           S+ +++LG    GKSSI+ R +  +   +  PT+G            +  +  ++D  G 
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
           E F ++   Y       L+V      +   + + ++   + Q  
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS 106

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 9e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGS 251
           S+ +++LG    GKSSI+ R +  +   +  PT+G            +  +  ++D  G 
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 252 EDFRTIWKQY 261
           E F ++   Y
Sbjct: 63  ERFASLAPMY 72

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEYGNKYEVF-LYDLGGSEDF 254
           ++++G    GKS+++ R               V F    ++   K     ++D  G E +
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R I   Y              R     L++  + +     +       L      ++ I+
Sbjct: 67  RRITSAYY-------------RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 113

Query: 315 VLG 317
           ++G
Sbjct: 114 LVG 116

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 313 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEYGNKYEVF-LYDLGGSEDF 368
           ++++G    GKS+++ R               V F    ++   K     ++D  G E +
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM------SCNCQVYLISAKNLSNGFKK 422
           R I   Y       LLV         +  + +L         N  + L+  K+     + 
Sbjct: 67  RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 126

Query: 423 SERDE 427
              DE
Sbjct: 127 VPTDE 131

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 1/138 (0%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           R + IL+LGLD AGK++I+ R+    +++ +PT+GFN          +  ++DLGG    
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI 62

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
           R  W+ Y       + V  S         +  L++   +  L  A  +    K+      
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 429 NISNFQIKNSSENLQDNN 446
             S          L+D  
Sbjct: 123 TSSEMANSLGLPALKDRK 140

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           R + IL+LGLD AGK++I+ R+    +++ +PT+GFN          +  ++DLGG    
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI 62

Query: 255 RTIWKQY 261
           R  W+ Y
Sbjct: 63  RPYWRCY 69

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 304 PLVDFRSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFL 359
            +  F+   +++LG    GKSS++ R +     E   S +      +         +  +
Sbjct: 3   KICQFK---LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59

Query: 360 YDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
           +D  G E + ++   Y       ++V    +     R + ++     Q
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
           +++LG    GKSS++ R +     E   S +      +         +  ++D  G E +
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68

Query: 255 RTIWKQYL 262
            ++   Y 
Sbjct: 69  HSLAPMYY 76

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 254
            +++G    GKS ++ +   +  ++  P               G K ++ ++D  G E F
Sbjct: 7   YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R + + Y              R     L++  + + S      +  T    +   +  I+
Sbjct: 67  RAVTRSYY-------------RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 113

Query: 315 VLG 317
           ++G
Sbjct: 114 LIG 116

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 368
            +++G    GKS ++ +   +  ++  P               G K ++ ++D  G E F
Sbjct: 7   YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66

Query: 369 RTIWKQY 375
           R + + Y
Sbjct: 67  RAVTRSY 73

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEY---GNKYEVFLYDLGGSEDF 254
           ++ LG  + GK+S+I R +      +   T+G +              + L+D  G E F
Sbjct: 3   LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62

Query: 255 RTIWKQYL 262
           R++   Y+
Sbjct: 63  RSLIPSYI 70

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEY---GNKYEVFLYDLGGSEDF 368
           ++ LG  + GK+S+I R +      +   T+G +              + L+D  G E F
Sbjct: 3   LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62

Query: 369 RTIWKQYL 376
           R++   Y+
Sbjct: 63  RSLIPSYI 70

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 310 SVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 365
           ++ ++V+G    GKSS+I+R       +     +      R          + L+D  G 
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSER 425
           E+F  I K Y       +LV  +      DR     +S   +  +    ++     +++ 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFST-----TDRESFEAISSWREKVVAEVGDIPTALVQNKI 116

Query: 426 DETNISNFQIKNSSENLQDNN 446
           D  + S  + + +    +   
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLK 137

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 309 RSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
           R + + +LG    GKSSI+ R +       I   +      +        ++  ++D  G
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 365 SEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
            E FR +   Y    +  ++V            + ++      
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 105

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
           +++LG    GK+S++ R       +  I+ +      +     G +  + ++D  G E F
Sbjct: 6   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65

Query: 369 RTIWKQYLGTVSQTLLV-----SHSLSGRPDDRCQVYLMSCNCQVYLISAKN 415
             +   Y    +  +LV       S     +   ++  M  N     I    
Sbjct: 66  HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 117

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 195 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGS 251
           +++  +V+G    GK+ ++      +     VPTV  N A   +  G  Y + L+D  G 
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 252 EDFRTIWKQY 261
           ED+  +    
Sbjct: 62  EDYDRLRPLS 71

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGS 365
           +++  +V+G    GK+ ++      +     VPTV  N A   +  G  Y + L+D  G 
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 366 EDFRTIWKQY 375
           ED+  +    
Sbjct: 62  EDYDRLRPLS 71

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL----GGSED 367
           I+V+G  N GK+ +  R   G        T+G +          E     L    G    
Sbjct: 5   IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64

Query: 368 FRTIWKQYLGTVSQTLLVSH 387
            +++ + Y   V   + V  
Sbjct: 65  RKSMVQHYYRNVHAVVFVYD 84

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNK----YEVFLYDLGGSED 367
           +++LG    GK+S++ R +  +       T+G +    E          + ++D  G E 
Sbjct: 5   VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64

Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKN 415
           F+++   +       +LV    +    +  + +         + S + 
Sbjct: 65  FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 313 ILVLGLDNAGKSSIIKRILGE-PIISLVP--TVGFNRARVEYGNKYEVFLYDLGG----S 365
           + ++G  + GKS+++  +    P I+     T+  N   VE  +     + DL G    +
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
                +  Q+L  + +T ++ H +     +    Y         
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR 255
           ++++G    GK+ ++      +     VPTV  N       +  + E+ L+D  G ED+ 
Sbjct: 5   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64

Query: 256 TIWKQY 261
            +    
Sbjct: 65  RLRPLS 70

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR 369
           ++++G    GK+ ++      +     VPTV  N       +  + E+ L+D  G ED+ 
Sbjct: 5   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64

Query: 370 TIWKQY 375
            +    
Sbjct: 65  RLRPLS 70

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVF 244
           + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN     
Sbjct: 5   LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL 51

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVF 358
           + ++GL  +GK++ +  I  G+    ++PTVGFN  ++  GN     
Sbjct: 5   LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL 51

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVE---YGNKYEVFLYDLGGSEDF 254
           +++LG    GKSS++ R +  +    L  T+G      +    G+   + ++D  G E F
Sbjct: 9   VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R++   +        L      +     +     +            +  + +  S P +
Sbjct: 69  RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI---------YYADVKEPESFPFV 119

Query: 315 VLG 317
           +LG
Sbjct: 120 ILG 122

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVE---YGNKYEVFLYDLGGSEDF 368
           +++LG    GKSS++ R +  +    L  T+G      +    G+   + ++D  G E F
Sbjct: 9   VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM 402
           R++   +       LL       +       +  
Sbjct: 69  RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 102

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG---FNRARVEYGNKYEVFLYDLGGSEDF 254
           +++LG    GK+S++ + +  +       T+G     +  +       + ++D  G E F
Sbjct: 5   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQV 290
           +++   +        L    +       +     + 
Sbjct: 65  QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 100

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG---FNRARVEYGNKYEVFLYDLGGSEDF 368
           +++LG    GK+S++ + +  +       T+G     +  +       + ++D  G E F
Sbjct: 5   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64

Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLI 411
           +++   +       +          D        + +      
Sbjct: 65  QSLGVAFYRGADCCV-------LVFDVTAPNTFKTLDSWRDEF 100

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 17/123 (13%)

Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL---GGSEDF 254
            +++G    GKS ++ +            T+G            +     +    G E F
Sbjct: 6   YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65

Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
           R+I + Y              R     L++  + +        +           ++ I+
Sbjct: 66  RSITRSYY-------------RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 112

Query: 315 VLG 317
           ++G
Sbjct: 113 LIG 115

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 24/177 (13%)

Query: 290 VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE------PIISLVPTVG 343
            S I D L       L       + V G   +GKSS I  + G          + V  V 
Sbjct: 42  NSAISDALKEIDSSVLN------VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95

Query: 344 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL--GTVSQTLLVSHSLSGRP---DDRCQ 398
             R   ++ N   V  +DL G          YL      +        + R    D    
Sbjct: 96  MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 155

Query: 399 VYLMSCNCQVYLISAK------NLSNGFKKSERDETNISNFQIKNSSENLQDNNTSD 449
             +     + Y +  K      N ++G  ++   E  + + +  N     ++N  ++
Sbjct: 156 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR-LNCVNTFRENGIAE 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.94
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.92
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.92
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.92
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.89
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.82
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.82
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.76
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.06
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.87
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.87
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.86
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.82
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.79
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.77
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.77
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.77
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.74
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.74
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.71
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.7
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.66
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.61
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.61
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.6
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.6
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.6
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.56
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.55
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.53
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.49
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.48
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.37
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.33
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.33
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.31
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.26
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.26
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.21
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.21
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.09
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.08
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.07
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.03
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.02
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.02
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.01
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.87
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.86
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.85
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.85
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.81
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.79
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.78
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.75
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.73
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.62
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.6
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.59
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.57
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.54
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.51
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.48
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.46
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.43
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.42
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.37
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.32
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.29
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.26
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.14
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.11
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.11
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.09
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.05
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.04
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.02
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.98
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.77
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.74
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.72
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.57
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.56
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.56
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.32
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.32
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.27
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.23
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.2
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.14
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.12
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.08
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.04
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.03
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.02
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.01
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	96.0
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.97
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.95
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.94
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.93
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.91
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	95.9
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	95.79
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.78
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.67
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.67
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.64
d1okkd2	207	GTPase domain of the signal recognition particle r	95.62
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.61
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.61
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.6
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.6
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.56
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.52
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.46
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.43
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.32
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.31
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.29
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.23
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.23
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.17
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.14
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.93
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.85
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.77
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.56
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.53
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.46
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.46
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.13
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.05
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.0
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.87
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.77
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.64
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.63
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.55
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.51
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.5
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.47
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.39
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.35
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.19
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.06
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.9
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.89
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.59
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.41
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.36
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.22
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.16
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.1
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.09
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.09
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.86
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.86
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.79
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.69
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.59
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.55
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	91.34
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.99
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.98
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.56
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.48
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.46
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.36
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	90.34
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.25
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.18
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.16
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	89.78
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.63
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.59
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	89.5
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.77
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.71
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	88.4
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	88.04
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	87.73
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.62
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	87.24
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.04
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.98
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	86.55
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.37
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	86.25
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	86.21
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.11
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	85.94
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	85.93
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.35
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.62
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.76
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.11
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.42
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	81.23
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.68
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	80.26
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	80.03

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=2.2e-29  Score=244.81  Aligned_cols=210  Identities=16%  Similarity=0.132  Sum_probs=148.3

Q ss_pred             hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304        150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG  229 (537)
Q Consensus       150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G  229 (537)
                      ...+.++++++.||+..                  +...++|.+.+|++++|+||||||||||+++|+|.    +.|++|
T Consensus         4 M~~I~v~nlsk~yg~~~------------------al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl----~~p~sG   61 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFT------------------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL----EEPTEG   61 (239)
T ss_dssp             CCCEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE
T ss_pred             cCeEEEEEEEEEECCEE------------------EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCC
Confidence            34578899999887432                  23446788899999999999999999999999999    999999


Q ss_pred             eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304        230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV  306 (537)
Q Consensus       230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~  306 (537)
                          +|.++| .++     ......+    +.+|+|||++.+++.++.            .+++.... ...++.   ..
T Consensus        62 ----~I~i~g-~~i-----~~~~~~~----r~ig~v~Q~~~l~~~ltv------------~enl~~~~-~~~~~~~~~~~  114 (239)
T d1v43a3          62 ----RIYFGD-RDV-----TYLPPKD----RNISMVFQSYAVWPHMTV------------YENIAFPL-KIKKFPKDEID  114 (239)
T ss_dssp             ----EEEETT-EEC-----TTSCGGG----GTEEEEEC------CCCH------------HHHHHTTC-C--CCCHHHHH
T ss_pred             ----EEEEcc-eec-----ccCCccc----ceEEEEeechhhcccchH------------HHHHHHHH-HHcCCCHHHHH
Confidence                999997 443     2222222    569999999988776554            11111111 011111   11


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~  379 (537)
                      .+....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |+|++  ....+|   .++.++.
T Consensus       115 ~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv----aiAraL~~-~--P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~  186 (239)
T d1v43a3         115 KRVRWAAELLQIEELL-NRYPAQLSGGQRQRV----AVARAIVV-E--PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL  186 (239)
T ss_dssp             HHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----HHHhhhcc-C--CCceeecCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            2233455678888776 455999999999999    99999996 5  8999999  99993  333344   4554555


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+++++ +||+.+....+  +++|++|+++..|+++++.
T Consensus       187 g~tii~v-THd~~~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         187 KVTTIYV-THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             TCEEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6677777 89999887654  9999999999999999884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.7e-29  Score=240.95  Aligned_cols=206  Identities=16%  Similarity=0.132  Sum_probs=125.4

Q ss_pred             ccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE
Q psy16304        154 GIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA  233 (537)
Q Consensus       154 ~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~  233 (537)
                      .++|+++.|++..                  +..+++|.+.+|++++|+||||||||||+++|+|.    ..|++|    
T Consensus         2 ev~nv~k~yg~~~------------------~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl----~~p~sG----   55 (232)
T d2awna2           2 QLQNVTKAWGEVV------------------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----ETITSG----   55 (232)
T ss_dssp             EEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE----
T ss_pred             EEEEEEEEECCEE------------------EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC----CCCCCC----
Confidence            5677788776432                  33456788899999999999999999999999999    999999    


Q ss_pred             EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCC
Q psy16304        234 RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRS  310 (537)
Q Consensus       234 ~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~  310 (537)
                      +|.++| .++     ......    ++.+|+|||++.+++.++.            .+++...+. ...+.   ...+..
T Consensus        56 ~I~i~g-~~i-----~~~~~~----~r~ig~v~Q~~~l~~~~tv------------~eni~~~~~-~~~~~~~~~~~~v~  112 (232)
T d2awna2          56 DLFIGE-KRM-----NDTPPA----ERGVGMVFQSYALYPHLSV------------AENMSFGLK-LAGAKKEVINQRVN  112 (232)
T ss_dssp             EEEESS-SCC-----TTSCGG----GTCEEEECSSCCC----------------------------------CHHHHHHH
T ss_pred             EEEECC-EEC-----CCCchh----hceeeeeccccccccchhH------------HHHHHHHHH-HcCCCHHHHHHHHH
Confidence            999887 322     222222    2679999999988776554            122211111 11111   112234


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vI  383 (537)
                      ..+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |+++++|  |+|++..  ..+|   .++.++.+.++
T Consensus       113 ~~l~~~~l~~~~-~~~~~~LSGGqkQRv----aiAraL~~-~--P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~ti  184 (232)
T d2awna2         113 QVAEVLQLAHLL-DRKPKALSGGQRQRV----AIGRTLVA-E--PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM  184 (232)
T ss_dssp             HHHHHC--------------------------CHHHHHHT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHhCCChhhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            455577887665 556999999999999    99999996 5  8999999  9999322  3333   45555556677


Q ss_pred             EEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++ +||+.++...+  +++|++|+++..|.+.++.
T Consensus       185 i~v-THd~~~a~~~~dri~vm~~G~iv~~G~~~el~  219 (232)
T d2awna2         185 IYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELY  219 (232)
T ss_dssp             EEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEE-eCCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence            777 89998887754  9999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.94  E-value=1.1e-29  Score=247.27  Aligned_cols=214  Identities=17%  Similarity=0.101  Sum_probs=156.6

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++|+.|.||+..                  +.++++|.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~i~v~nl~k~yg~~~------------------al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl----~~p~sG--   58 (240)
T d1g2912           3 GVRLVDVWKVFGEVT------------------AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL----EEPSRG--   58 (240)
T ss_dssp             EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred             cEEEEeEEEEECCEE------------------EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC----CCCCCC--
Confidence            467788888886432                  33456788889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++...+.....   ...++.+|+|||++.+++.++.            .+++...+.. ..+.   ...+
T Consensus        59 --~I~~~g-~~i~~~~~~~~~---~~~~r~ig~v~Q~~~L~~~ltV------------~eni~~~~~~-~~~~~~e~~~~  119 (240)
T d1g2912          59 --QIYIGD-KLVADPEKGIFV---PPKDRDIAMVFQSYALYPHMTV------------YDNIAFPLKL-RKVPRQEIDQR  119 (240)
T ss_dssp             --EEEETT-EEEEEGGGTEEC---CGGGSSEEEECSCCCCCTTSCH------------HHHHHHHHHH-TTCCHHHHHHH
T ss_pred             --EEEECC-EEecccchhhhc---ccccccceecccchhhcchhhh------------hHhhhhhHHH-cCCCHHHHHHH
Confidence              999997 666554432111   1223679999999998877654            1222111111 1111   1123


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |+|++  ....+|   .++.++.+.
T Consensus       120 v~~~l~~~~l~~~~-~~~p~~LSGGqkQRv----~IAraL~~-~--P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~  191 (240)
T d1g2912         120 VREVAELLGLTELL-NRKPRELSGGQRQRV----ALGRAIVR-K--PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV  191 (240)
T ss_dssp             HHHHHHHHTCGGGT-TCCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEecCCCcccCHHHHHHHHHHHHHHHhccCC
Confidence            44556688888765 556999999999999    99999997 5  8999999  99993  233333   455555566


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||+.+....+  +++|++|+++..|+++++.
T Consensus       192 tvi~v-THd~~~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         192 TTIYV-THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            77777 89998887654  9999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.1e-29  Score=243.92  Aligned_cols=216  Identities=14%  Similarity=0.070  Sum_probs=150.4

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++++++.|+...-              .+.+.++++|.+.+|+++||+||||||||||+++|+|.    ..|++|  
T Consensus         1 mI~i~nlsk~y~~~~~--------------~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl----~~p~sG--   60 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEE--------------IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL----DKPTEG--   60 (230)
T ss_dssp             CEEEEEEEEEEEETTE--------------EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             CEEEEeEEEEeCCCCe--------------eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC----CCCCcc--
Confidence            3567888888764320              13345667888999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc--cccCcCCcc---
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL--TSATHLPLV---  306 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l--~~~~~l~~~---  306 (537)
                        +|.++| .++..++   ....+...++.+|+|||++.+++.++.            .+++...+  .........   
T Consensus        61 --~I~~~g-~~i~~~~---~~~~~~~r~~~ig~v~Q~~~l~~~~tv------------~eni~~~~~~~~~~~~~~~~~~  122 (230)
T d1l2ta_          61 --EVYIDN-IKTNDLD---DDELTKIRRDKIGFVFQQFNLIPLLTA------------LENVELPLIFKYRGAMSGEERR  122 (230)
T ss_dssp             --EEEETT-EECTTCC---HHHHHHHHHHHEEEECTTCCCCTTSCH------------HHHHHHHHHTCCSSCCCHHHHH
T ss_pred             --eeEECC-EEcCcCC---hhhcchhhcceEEEEecchhhCcCccH------------HHHHhHHHHHhccCCCCHHHHH
Confidence              999997 4432221   123334445779999999988876554            11111111  011111111   


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~  379 (537)
                      .+....+..+|+.......++.+|||||+||+    ++|++++. +  |+++++|  |++++     .+..++.++.++.
T Consensus       123 ~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv----aIAraL~~-~--P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~  195 (230)
T d1l2ta_         123 KRALECLKMAELEERFANHKPNQLSGGQQQRV----AIARALAN-N--PPIILADQPTGALDSKTGEKIMQLLKKLNEED  195 (230)
T ss_dssp             HHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhchhhhhhcCChhhCCHHHHHHH----HHHhhhhc-C--CCEEEecCCccccCHHHHHHHHHHHHHHHHhh
Confidence            11223344677765444667999999999999    99999996 5  8999999  99992     2333335555666


Q ss_pred             CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA  413 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n  413 (537)
                      +.+++++ +||++.+..++ +++|++|+++..+..
T Consensus       196 g~tii~v-THd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         196 GKTVVVV-THDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             CCEEEEE-CSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             CCEEEEE-CCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            6778888 89988765444 999999999988754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=2.1e-29  Score=245.08  Aligned_cols=215  Identities=18%  Similarity=0.143  Sum_probs=156.4

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.++|++|.|+...                +.+.++++|.+++|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         3 ~i~v~nlsk~y~~g~----------------~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl----~~p~~G--   60 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGK----------------VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL----DVPSTG--   60 (242)
T ss_dssp             CEEEEEEEEEEGGGT----------------EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS----SCCSEE--
T ss_pred             EEEEEeEEEEECCCC----------------EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC----cCCCCc--
Confidence            466788888875321                2344567788999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~  308 (537)
                        +|.++| .++...+......    .++.+|+|||++.+++.++.            .+++...+... .+.   ...+
T Consensus        61 --~I~~~g-~~i~~~~~~~~~~----~rr~ig~vfQ~~~L~p~ltv------------~eni~~~l~~~-~~~~~~~~~~  120 (242)
T d1oxxk2          61 --ELYFDD-RLVASNGKLIVPP----EDRKIGMVFQTWALYPNLTA------------FENIAFPLTNM-KMSKEEIRKR  120 (242)
T ss_dssp             --EEEETT-EEEEETTEESSCG----GGSCEEEEETTSCCCTTSCH------------HHHHHGGGTTS-SCCHHHHHHH
T ss_pred             --eEEECC-EEeecCchhhcch----hhccceEEeccccccccccH------------HHHhhhhhHhh-cCCHHHHHHH
Confidence              999997 6665432211112    23679999999998877654            22222222111 111   1123


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~  381 (537)
                      ....+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |+++     .....++.++.++.+.
T Consensus       121 v~~~l~~~gL~~~~-~~~p~~LSGGqkQRv----aiARaL~~-~--P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~  192 (242)
T d1oxxk2         121 VEEVAKILDIHHVL-NHFPRELSGAQQQRV----ALARALVK-D--PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV  192 (242)
T ss_dssp             HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhhcChHhhh-hCChhhCCHHHHhHH----HHHhHHhh-c--ccceeecCCccCCCHHHHHHHHHHHHHHHhccCC
Confidence            34556688888766 555999999999999    99999997 5  8999999  9998     2333334555555566


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +++++ +||+......+  +++|++|+++..|+++++.
T Consensus       193 tvi~v-THd~~~~~~~~dri~vm~~G~iv~~g~~~el~  229 (242)
T d1oxxk2         193 TLLVV-SHDPADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (242)
T ss_dssp             EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEE-ECCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            77777 89988876644  9999999999999999884

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.4e-29  Score=244.82  Aligned_cols=216  Identities=16%  Similarity=0.128  Sum_probs=157.0

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.++|+++.|+...-              .+.+.++++|.+.+|+++||+||||||||||+++|+|.    ..|++|  
T Consensus         1 mi~v~nlsk~y~~~~~--------------~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl----~~p~sG--   60 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTR--------------TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL----ERPTEG--   60 (240)
T ss_dssp             CEEEEEEEEEEECSSC--------------EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             CEEEEeEEEEeCCCCe--------------eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC----ccccCC--
Confidence            3577888888765321              12345677888999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF  308 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~  308 (537)
                        +|.++| .++..++.   ... ...++.+|+|||++.+++.++.            .+++...+. ..++..   ..+
T Consensus        61 --~I~~~g-~~i~~~~~---~~~-~~~rr~ig~VfQ~~~l~~~~tv------------~eni~~~l~-~~~~~~~~~~~~  120 (240)
T d3dhwc1          61 --SVLVDG-QELTTLSE---SEL-TKARRQIGMIFQHFNLLSSRTV------------FGNVALPLE-LDNTPKDEVKRR  120 (240)
T ss_dssp             --EEEETT-EEECTTCH---HHH-HHHHHHEEECCSSCCCCTTSBH------------HHHHHHHHH-TTTCCTTHHHHH
T ss_pred             --ceEEcC-eEeeeCCh---hhh-hhhhccccccccccccCCCccH------------HHHHHHHHH-HcCCCHHHHHHH
Confidence              999997 55532221   122 2233679999999987776554            222221111 111111   123


Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCE
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQ  381 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~  381 (537)
                      +...+..+|+.+.. ...+.+|||||+||+    ++|++++. +  |+++++|  |+|++     .+...+.++.++.+.
T Consensus       121 v~~~L~~vgL~~~~-~~~~~~LSGG~~QRv----aiAraL~~-~--P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~  192 (240)
T d3dhwc1         121 VTELLSLVGLGDKH-DSYPSNLSGGQKQRV----AIARALAS-N--PKVLLCDEATSALDPATTRSILELLKDINRRLGL  192 (240)
T ss_dssp             HHHHHHHHSTTTTT-SSCBSCCCHHHHHHH----HHHHHHHT-C--CSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHhhhhcc-C--CCeEEeccccccCCHHHhhHHHHHHHHHHhccCC
Confidence            34556678998775 566999999999999    99999996 5  8999999  99993     233333455555566


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl  416 (537)
                      +++++ +||+......+  +++|++|+++..|+++++
T Consensus       193 tvi~v-THdl~~~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         193 TILLI-THEMDVVKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             EEEEE-BSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             EEEEE-cCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            77777 89998887654  999999999999999988

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=1.2e-28  Score=237.99  Aligned_cols=207  Identities=15%  Similarity=0.087  Sum_probs=150.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      ++.+++++|.|+..                   +..++||.+.+|++++|+||||||||||+++|+|.    ..|++|  
T Consensus         1 mi~v~nlsk~y~~~-------------------aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl----~~p~sG--   55 (229)
T d3d31a2           1 MIEIESLSRKWKNF-------------------SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF----HVPDSG--   55 (229)
T ss_dssp             CEEEEEEEEECSSC-------------------EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS----SCCSEE--
T ss_pred             CEEEEEEEEEeCCE-------------------EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC----cCCCCC--
Confidence            35778888887531                   12356788999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV  311 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~  311 (537)
                        +|.++| .++     ......    ++.+|+|||++.+++.++.            .+++...+. ........+...
T Consensus        56 --~I~~~G-~~i-----~~~~~~----~r~ig~v~Q~~~l~~~~tV------------~enl~~~~~-~~~~~~~~~~~~  110 (229)
T d3d31a2          56 --RILLDG-KDV-----TDLSPE----KHDIAFVYQNYSLFPHMNV------------KKNLEFGMR-MKKIKDPKRVLD  110 (229)
T ss_dssp             --EEEETT-EEC-----TTSCHH----HHTCEEECTTCCCCTTSCH------------HHHHHHHHH-HHCCCCHHHHHH
T ss_pred             --EEEEcc-Eec-----cccchh----HhcceeeccccccCccccH------------HHHHHHHHh-hccccHHHHHHH
Confidence              999997 544     122222    3679999999998877554            111111110 111111122333


Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLL  384 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIl  384 (537)
                      .+..+|+.+.. .+.+.+|||||+||+    ++|++++. +  |+++++|  |+|++     .+..++..+.++.+.+++
T Consensus       111 ~l~~~~l~~~~-~~~~~~LSGG~~QRv----aiAraL~~-~--P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii  182 (229)
T d3d31a2         111 TARDLKIEHLL-DRNPLTLSGGEQQRV----ALARALVT-N--PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL  182 (229)
T ss_dssp             HHHHTTCTTTT-TSCGGGSCHHHHHHH----HHHHHTTS-C--CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhcchhhH-hCChhhCCHHHhcch----hhhhhhhc-c--CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence            44467777665 455999999999999    99999996 5  8999999  99993     223333455556667777


Q ss_pred             EEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++ +||+.+....+  +++|++|+++..|+++++.
T Consensus       183 ~v-tHd~~~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         183 HI-THDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             EE-ESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             EE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            77 89998887654  9999999999999999884

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=8.5e-28  Score=236.90  Aligned_cols=217  Identities=13%  Similarity=0.076  Sum_probs=154.2

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++|++|.||+..                  +...++|.+.+|+++||+|+||||||||+++|+|.    +.|++|   
T Consensus         3 Lev~nl~k~yg~~~------------------al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl----~~p~~G---   57 (258)
T d1b0ua_           3 LHVIDLHKRYGGHE------------------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL----EKPSEG---   57 (258)
T ss_dssp             EEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE---
T ss_pred             EEEEEEEEEECCEE------------------EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC----ccCCCC---
Confidence            57788888886432                  23456788999999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCC------CchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304        233 ARVEYGNKYEVFLYDLGG------SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--  304 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G------~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--  304 (537)
                       +|.++| .++.......      .......+++.+|+|||++.+++.++.            .+++.........+.  
T Consensus        58 -~I~~~G-~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv------------~env~~~~~~~~~~~~~  123 (258)
T d1b0ua_          58 -AIIVNG-QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV------------LENVMEAPIQVLGLSKH  123 (258)
T ss_dssp             -EEEETT-EECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH------------HHHHHHHHHHTTCCCHH
T ss_pred             -CEEECC-EEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhc------------chhhhhhHHHhcCCCHH
Confidence             999997 6654433211      112334566789999999987766544            111111100011111  


Q ss_pred             -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHH
Q psy16304        305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYL  376 (537)
Q Consensus       305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~  376 (537)
                       ...+....+..+|+.......++.+|||||+||+    ++|++++. +  |+++++|  |+|+     ..+..+++++.
T Consensus       124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv----~iAraL~~-~--P~llilDEPT~gLD~~~~~~i~~ll~~l~  196 (258)
T d1b0ua_         124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV----SIARALAM-E--PDVLLFDEPTSALDPELVGEVLRIMQQLA  196 (258)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH----HHHHHHhc-C--CCEEEeccccccCCHHHHHHHHHhhhhhc
Confidence             1112233455677766544566899999999999    99999996 5  8999999  9999     33333445555


Q ss_pred             hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      ++ +.+++++ +||+......+  +++|++|+++..|.++++.
T Consensus       197 ~~-g~til~v-tHdl~~~~~~adri~vm~~G~iv~~g~~~ev~  237 (258)
T d1b0ua_         197 EE-GKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF  237 (258)
T ss_dssp             HT-TCCEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             cc-CCceEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            54 4567777 89999887654  9999999999999999884

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.92  E-value=5.3e-28  Score=236.15  Aligned_cols=215  Identities=13%  Similarity=0.102  Sum_probs=147.4

Q ss_pred             HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304        148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  227 (537)
Q Consensus       148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt  227 (537)
                      |.+.++.++++++.||+...                  .++++|.+.+|+++||+||||||||||+++|+|.    +.|+
T Consensus         2 ~sd~~Lev~~l~k~yg~~~a------------------l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl----~~p~   59 (240)
T d1ji0a_           2 VSDIVLEVQSLHVYYGAIHA------------------IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQ   59 (240)
T ss_dssp             CCSEEEEEEEEEEEETTEEE------------------EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCS
T ss_pred             CcceEEEEeeEEEEECCEEE------------------EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC----CCCC
Confidence            55778899999999875332                  3446788889999999999999999999999999    9999


Q ss_pred             eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-c
Q psy16304        228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-V  306 (537)
Q Consensus       228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-~  306 (537)
                      +|    +|.++| .++     .... .....+..+++++|+..+++.++..            +++............ .
T Consensus        60 ~G----~I~~~G-~~i-----~~~~-~~~~~r~gi~~~~q~~~l~~~ltv~------------en~~~~~~~~~~~~~~~  116 (240)
T d1ji0a_          60 KG----KIIFNG-QDI-----TNKP-AHVINRMGIALVPEGRRIFPELTVY------------ENLMMGAYNRKDKEGIK  116 (240)
T ss_dssp             EE----EEEETT-EEC-----TTCC-HHHHHHTTEEEECSSCCCCTTSBHH------------HHHHGGGTTCCCSSHHH
T ss_pred             cc----EEEecc-ccc-----cccc-HHHHHHhcccccCcccccCCcccHH------------HHHHHHHHhcCCHHHHH
Confidence            99    999987 433     2211 1122234578999998887765541            111000000000000 0


Q ss_pred             ccCCccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhc
Q psy16304        307 DFRSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGT  378 (537)
Q Consensus       307 ~~~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~  378 (537)
                      ......+..+ ++.+.. ...+.+|||||+||+    ++|++++. +  |++++||  |+|+  .....+|   +++.++
T Consensus       117 ~~~~~~~~~~~~l~~~~-~~~~~~LSGG~~Qrv----~iAraL~~-~--P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~  188 (240)
T d1ji0a_         117 RDLEWIFSLFPRLKERL-KQLGGTLSGGEQQML----AIGRALMS-R--PKLLMMDEPSLGLAPILVSEVFEVIQKINQE  188 (240)
T ss_dssp             HHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHH----HHHHHHTT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhChHHHH-hCchhhCCHHHHHHH----HHHHHHHh-C--CCEeeecCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            0011112222 455444 445889999999999    99999997 5  8999999  9999  2333333   455444


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                       +.+++++ +||+.+....+  +++|++|+++..|+++++.
T Consensus       189 -g~til~~-tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         189 -GTTILLV-EQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             -TCCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             -CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence             4566666 89988776654  9999999999999998873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.7e-27  Score=232.10  Aligned_cols=219  Identities=14%  Similarity=0.066  Sum_probs=152.4

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.++|+.|.||...+.                  +.++|.+.+|+++||+||||||||||+++|+|.    +.|++|   
T Consensus         3 I~v~nl~k~yg~~~vl------------------~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~----~~p~~G---   57 (238)
T d1vpla_           3 VVVKDLRKRIGKKEIL------------------KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL----IKPSSG---   57 (238)
T ss_dssp             EEEEEEEEEETTEEEE------------------EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE---
T ss_pred             EEEEeEEEEECCEEEE------------------ccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCC---
Confidence            5678888887755433                  345678889999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccCC
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFRS  310 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~~  310 (537)
                       ++.++| .++     ..   .....+..++++||...+++.++..            +++..........  +......
T Consensus        58 -~i~i~G-~~i-----~~---~~~~~~~~i~~vpq~~~~~~~ltv~------------e~l~~~~~~~~~~~~~~~~~~~  115 (238)
T d1vpla_          58 -IVTVFG-KNV-----VE---EPHEVRKLISYLPEEAGAYRNMQGI------------EYLRFVAGFYASSSSEIEEMVE  115 (238)
T ss_dssp             -EEEETT-EET-----TT---CHHHHHTTEEEECTTCCCCTTSBHH------------HHHHHHHHHHCCCHHHHHHHHH
T ss_pred             -EEEECc-Eec-----cc---ChHHHHhhEeEeeeccccCCCccHH------------HHHHHHHHhcCCCHHHHHHHHH
Confidence             999987 332     11   1223457899999998876654431            1110000000000  0001112


Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTL  383 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vI  383 (537)
                      ..+..+|+.... ...+.+|||||+||+    ++|++++. +  |++++||  |+|++  ....+|   +++.++ +.++
T Consensus       116 ~~l~~~~l~~~~-~~~~~~lSgG~~qrv----~iA~al~~-~--p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~ti  186 (238)
T d1vpla_         116 RATEIAGLGEKI-KDRVSTYSKGMVRKL----LIARALMV-N--PRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTI  186 (238)
T ss_dssp             HHHHHHCCGGGG-GSBGGGCCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHhCCCHHHH-hhhhhhCCHHHHHHH----HHHHHHhc-C--CCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEE
Confidence            233456666554 444999999999999    99999997 5  8999999  99993  223333   444444 4566


Q ss_pred             EEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhccchhhhh
Q psy16304        384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKKSERDET  428 (537)
Q Consensus       384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~~~~~~~  428 (537)
                      +++ +|++.+....+  +++|++|+++..|+++++.+.+....+++.
T Consensus       187 i~~-tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~  232 (238)
T d1vpla_         187 LVS-SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEV  232 (238)
T ss_dssp             EEE-ECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHH
T ss_pred             EEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHH
Confidence            666 89999888655  999999999999999999776665555444

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=4.5e-27  Score=228.10  Aligned_cols=190  Identities=18%  Similarity=0.082  Sum_probs=138.1

Q ss_pred             ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304        189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT  268 (537)
Q Consensus       189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~  268 (537)
                      ++|.+. +++++|+||||||||||+++|+|.    ..|++|    +|.++| .++.     .....+    +.+|+|||+
T Consensus        18 vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl----~~p~~G----~I~~~G-~~i~-----~~~~~~----r~ig~v~Q~   78 (240)
T d2onka1          18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGI----VKPDRG----EVRLNG-ADIT-----PLPPER----RGIGFVPQD   78 (240)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHHTS----SCCSEE----EEEETT-EECT-----TSCTTT----SCCBCCCSS
T ss_pred             EEEEeC-CEEEEEECCCCChHHHHHHHHHcC----CCCCce----EEEECC-EECC-----cCCHHH----cCceeeccc
Confidence            556664 589999999999999999999999    999999    999997 5442     222222    679999999


Q ss_pred             CCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304        269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR  348 (537)
Q Consensus       269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al  348 (537)
                      +.+++.++.            .+++...+......+...+....+..+|+.+.. ...+.+|||||+||+    ++|+++
T Consensus        79 ~~l~~~ltV------------~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~-~~~~~~LSGG~kQRv----aiAral  141 (240)
T d2onka1          79 YALFPHLSV------------YRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRV----ALARAL  141 (240)
T ss_dssp             CCCCTTSCH------------HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHH----HHHHHH
T ss_pred             hhhcccchh------------hHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhh-hCChhhCCHHHHHHH----HHHHHH
Confidence            998876554            122211111111111112334555678888765 555999999999999    999999


Q ss_pred             eccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304        349 VEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       349 l~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~  418 (537)
                      ++ +  |+++++|  |+|++  ....+|   ..+.++.+.+++++ +||+.+....+  +++|++|+++..|++.++.+
T Consensus       142 ~~-~--P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v-tHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         142 VI-Q--PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV-THDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             TT-C--CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hc-c--CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            97 5  8999999  99993  233344   44445545667777 89988877644  99999999999999998843

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=2.4e-26  Score=226.25  Aligned_cols=223  Identities=15%  Similarity=0.108  Sum_probs=147.6

Q ss_pred             hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304        151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF  230 (537)
Q Consensus       151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~  230 (537)
                      .++.++|+++.||+..+                  .++++|.+.+|+++||+||||||||||+++|+|.    +.|++| 
T Consensus         3 ~iL~v~nlsk~yg~~~a------------------L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl----~~p~~G-   59 (254)
T d1g6ha_           3 EILRTENIVKYFGEFKA------------------LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF----LKADEG-   59 (254)
T ss_dssp             EEEEEEEEEEEETTEEE------------------EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE-
T ss_pred             ceEEEEEEEEEECCeEE------------------EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC----CcCCCc-
Confidence            36788999998875432                  3446788889999999999999999999999999    999999 


Q ss_pred             eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCc-ccc--cccCcC-Ccc
Q psy16304        231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIP-DEL--TSATHL-PLV  306 (537)
Q Consensus       231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~-~~l--~~~~~l-~~~  306 (537)
                         +|.++| .++     .+. ..+...+..++++||++.+++.++..--+.+. ......... ..+  .+.... ...
T Consensus        60 ---~I~~~g-~~i-----~~~-~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  128 (254)
T d1g6ha_          60 ---RVYFEN-KDI-----TNK-EPAELYHYGIVRTFQTPQPLKEMTVLENLLIG-EICPGESPLNSLFYKKWIPKEEEMV  128 (254)
T ss_dssp             ---EEEETT-EEC-----TTC-CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGG-GTSTTSCHHHHHHHCSSCCCCHHHH
T ss_pred             ---EEEECC-Eec-----cch-hHHHHHHhcCCccCCccccCCCCeeeeeeeeh-hhhccccchhhhhhhcccccHHHHH
Confidence               999997 443     222 12233446699999999866554431000000 000000000 000  000000 000


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcC
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTV  379 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~  379 (537)
                      .++...+..+|+.... ...+.+||||++||+    ++|++++. +  |++++||  |+|++  ....+|   .++.+ .
T Consensus       129 ~~~~~~l~~~~l~~~~-~~~~~~LSgG~~Qrv----~iAraL~~-~--P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~  199 (254)
T d1g6ha_         129 EKAFKILEFLKLSHLY-DRKAGELSGGQMKLV----EIGRALMT-N--PKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K  199 (254)
T ss_dssp             HHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHhcCcchhc-cCchhhCCcHHHHHH----HHHHHHHh-C--cCchhhcCCcccCCHHHHHHHHHHHHHHHH-C
Confidence            1122334456776654 455999999999999    99999996 5  8999999  99992  233333   44433 3


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS  417 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~  417 (537)
                      +.+|+++ +||+++...++  +++|++|+++..|++.++.
T Consensus       200 g~til~v-sHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~  238 (254)
T d1g6ha_         200 GITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI  238 (254)
T ss_dssp             TCEEEEE-CSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred             CCEEEEE-eCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence            5677777 89998887654  8999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.2e-26  Score=222.80  Aligned_cols=216  Identities=14%  Similarity=0.136  Sum_probs=142.2

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      .+.+++++..|++..   +            ..+..+++|.+++|++++|||+||||||||+++|+|.    +.|++|  
T Consensus        11 ~I~~~nvsf~Y~~~~---~------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl----~~p~~G--   69 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP---D------------VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL----YQPTGG--   69 (251)
T ss_dssp             CEEEEEEEECCTTST---T------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred             eEEEEEEEEECCCCC---C------------CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc----cCCCcC--
Confidence            477888888876432   1            1123456788999999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee--cCcccccCCc---ccccccCcCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM--CGVHQVSGIP---DELTSATHLPL  305 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D--s~~~~~~~l~---~~l~~~~~l~~  305 (537)
                        +|.++| .++..++.       ..+++.+++|+|++.++.. ..+.+.+...  ..........   .....+..+..
T Consensus        70 --~I~i~g-~~i~~~~~-------~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~  139 (251)
T d1jj7a_          70 --QLLLDG-KPLPQYEH-------RYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ  139 (251)
T ss_dssp             --EEEETT-EEGGGBCH-------HHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTT
T ss_pred             --EEEECC-Eecchhhh-------HHHHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccc
Confidence              999997 54432222       2345789999999987754 1222211111  0000000000   00000001100


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH---hc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL---GT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~---~~  378 (537)
                                 |+...- ......|||||+||+    ++||+++. +  |++++||  |++++..  ..+++.+.   +.
T Consensus       140 -----------g~~~~i-~~~~~~LSGGqkQRv----aiARal~~-~--p~ililDEpTs~LD~~~~~~i~~~l~~l~~~  200 (251)
T d1jj7a_         140 -----------GYDTEV-DEAGSQLSGGQRQAV----ALARALIR-K--PCVLILDDATSALDANSQLQVEQLLYESPER  200 (251)
T ss_dssp             -----------GGGCBC-CSSCSSSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHTCGGG
T ss_pred             -----------cchhhH-hccCccCChhHceEE----EEeecccc-C--CcEEEecCcCcccChhhHHHHHHHHHHHhhh
Confidence                       111111 112457999999999    99999996 5  8999999  9999433  33344443   23


Q ss_pred             CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      .+.+++++ +|+......++ +++|++|+++..|+++++.+
T Consensus       201 ~~~Tvi~i-tH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         201 YSRSVLLI-TQHLSLVEQADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             GGCEEEEE-CSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            35577777 89988777666 99999999999999999854

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.89  E-value=8e-26  Score=220.84  Aligned_cols=212  Identities=17%  Similarity=0.124  Sum_probs=137.8

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      +++++|++..|++..    +             +-.+++|.+.+|+++||+||||||||||+++|+|.    +.|++|  
T Consensus         1 mle~knvsf~Y~~~~----~-------------vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl----~~p~~G--   57 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE----Q-------------ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF----YQPTAG--   57 (242)
T ss_dssp             CEEEEEEEECSSSSS----C-------------SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS----SCCSBS--
T ss_pred             CEEEEEEEEECCCCC----c-------------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh----hCCCCC--
Confidence            356778888775322    0             12345688889999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee--cCcccccCCcccc---cccCcCCc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM--CGVHQVSGIPDEL---TSATHLPL  305 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D--s~~~~~~~l~~~l---~~~~~l~~  305 (537)
                        +|.++| .++.-++.   ..++    +.+++|||++.++.. ..+.+.+...  ...+......+..   ........
T Consensus        58 --~I~i~g-~~i~~~~~---~~~r----~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (242)
T d1mv5a_          58 --EITIDG-QPIDNISL---ENWR----SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD  127 (242)
T ss_dssp             --CEEETT-EESTTTSC---SCCT----TTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTT
T ss_pred             --EEEECC-EEeccccH---HHHH----hheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcc
Confidence              999997 54433322   2333    779999999987754 1111111111  0000000000000   00000000


Q ss_pred             cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhc
Q psy16304        306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGT  378 (537)
Q Consensus       306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~  378 (537)
                           ..-..+|..       ...|||||+||+    ++||+++. +  |++++||  |+++     ..+...++.+.+ 
T Consensus       128 -----~~~~~i~~~-------g~~LSGGqkQRv----~iARal~~-~--p~ililDEpts~LD~~~~~~i~~~l~~l~~-  187 (242)
T d1mv5a_         128 -----QLNTEVGER-------GVKISGGQRQRL----AIARAFLR-N--PKILMLDEATASLDSESESMVQKALDSLMK-  187 (242)
T ss_dssp             -----GGGCEESTT-------SBCCCHHHHHHH----HHHHHHHH-C--CSEEEEECCSCSSCSSSCCHHHHHHHHHHT-
T ss_pred             -----cccccccCC-------CCCCCHHHHHHH----HHHHHHhc-C--CCEEEecCCccccCHHHHHHHHHHHHHHcC-
Confidence                 000122211       345999999999    99999997 5  8999999  9998     333444444432 


Q ss_pred             CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                       +.+++++ +|+......++ +++|++|+++..|+++++.+
T Consensus       188 -~~Tvi~i-tH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         188 -GRTTLVI-AHRLSTIVDADKIYFIEKGQITGSGKHNELVA  226 (242)
T ss_dssp             -TSEEEEE-CCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred             -CCEEEEE-ECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence             4567777 89988777655 99999999999999998854

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.9e-25  Score=215.64  Aligned_cols=196  Identities=16%  Similarity=0.111  Sum_probs=128.2

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .+++|.+.+|+++||+|+||||||||+++|+|.    +.|++|    +|.++| .++..++.       ..+++.+++|+
T Consensus        20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl----~~p~~G----~I~i~g-~~i~~~~~-------~~lr~~i~~v~   83 (241)
T d2pmka1          20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENG----QVLIDG-HDLALADP-------NWLRRQVGVVL   83 (241)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EETTTSCH-------HHHHHHEEEEC
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----CCCCCC----EEEECC-EEecccch-------hhhhceEEEEe
Confidence            456788889999999999999999999999999    999999    999997 54432222       23447899999


Q ss_pred             cCCCCCCC-ccceeeEEee-cCcccccCCcc---cccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        267 QTPLGRPD-SRTCQVYLIM-CGVHQVSGIPD---ELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       267 Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~---~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      |++.++.. ..+.+.+... .+.+......+   ....+..+.           .|+...- ......|||||+||+   
T Consensus        84 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~t~i-~~~g~~LSGGq~QRv---  148 (241)
T d2pmka1          84 QDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR-----------EGYNTIV-GEQGAGLSGGQRQRI---  148 (241)
T ss_dssp             SSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTST-----------TGGGSBC-STTTTCCCHHHHHHH---
T ss_pred             cccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhh-----------cchhhhc-CCCCCccCHHHHHHH---
Confidence            99987754 1222211100 00000000000   000001100           0111110 111457999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccc
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKN  415 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkd  415 (537)
                       ++||+++. +  |++++||  |++++..  ..+++.+.+. .+.+++++ +|+...+..++ +++|++|+++..|++.+
T Consensus       149 -alARal~~-~--p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~i-tH~l~~~~~~D~i~vl~~G~Iv~~G~~~e  223 (241)
T d2pmka1         149 -AIARALVN-N--PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII-AHRLSTVKNADRIIVMEKGKIVEQGKHKE  223 (241)
T ss_dssp             -HHHHHHTT-C--CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEE-CSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred             -hhhhhhhc-c--cchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence             99999996 4  8999999  9999332  3333433221 23466777 89988877666 99999999999999998


Q ss_pred             hhh
Q psy16304        416 LSN  418 (537)
Q Consensus       416 l~~  418 (537)
                      +.+
T Consensus       224 ll~  226 (241)
T d2pmka1         224 LLS  226 (241)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            843

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=5.2e-25  Score=216.38  Aligned_cols=214  Identities=15%  Similarity=0.081  Sum_probs=139.1

Q ss_pred             cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304        153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  232 (537)
Q Consensus       153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~  232 (537)
                      +.+++++..|++...                .+..+++|.+.+|+++||||+||||||||+++|+|.    +.|+.|   
T Consensus        14 I~~~nvsf~Y~~~~~----------------~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl----~~p~~G---   70 (253)
T d3b60a1          14 LEFRNVTFTYPGREV----------------PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF----YDIDEG---   70 (253)
T ss_dssp             EEEEEEEECSSSSSC----------------CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT----TCCSEE---
T ss_pred             EEEEEEEEEeCCCCC----------------ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc----cCCCcc---
Confidence            567778777754321                123456788899999999999999999999999999    999999   


Q ss_pred             EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc-ceeeEEee--cCcccccCC---cccccccCcCCcc
Q psy16304        233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR-TCQVYLIM--CGVHQVSGI---PDELTSATHLPLV  306 (537)
Q Consensus       233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~-~~il~v~D--s~~~~~~~l---~~~l~~~~~l~~~  306 (537)
                       +|.++| .++..++.       ..++..+++++|++.++.... ..+.+...  .+.++...+   ....+.+..++  
T Consensus        71 -~I~i~g-~~i~~~~~-------~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~--  139 (253)
T d3b60a1          71 -HILMDG-HDLREYTL-------ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD--  139 (253)
T ss_dssp             -EEEETT-EETTTBCH-------HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHST--
T ss_pred             -EEEECC-cccchhhh-------hhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhcc--
Confidence             999997 44322221       344578999999998775422 11111000  000000000   00000000000  


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh-cCCE
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG-TVSQ  381 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~-~~~~  381 (537)
                               -|+...- ......|||||+||+    ++||+++. +  |++++||  |++++..  ..+++.+.+ ..+.
T Consensus       140 ---------~gl~t~~-~~~~~~LSGGqkQRv----aiARal~~-~--p~ililDEpts~LD~~~~~~i~~~l~~l~~~~  202 (253)
T d3b60a1         140 ---------NGLDTII-GENGVLLSGGQRQRI----AIARALLR-D--SPILILDEATSALDTESERAIQAALDELQKNR  202 (253)
T ss_dssp             ---------TGGGSBC-CTTSCSSCHHHHHHH----HHHHHHHH-C--CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTS
T ss_pred             ---------ccchhhh-cCCCCCcCHHHHHHH----HHHHHHhc-C--CCEEEeccccccCCHHHHHHHHHHHHHhccCC
Confidence                     0221111 112457999999999    99999997 5  8999999  9999433  223333322 1245


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      +++++ +|+......++ +++|++|+++..|++.++.+
T Consensus       203 Tvi~i-tH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         203 TSLVI-AHRLSTIEQADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             EEEEE-CSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEE-ECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            67777 89998887666 99999999999999999854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.87  E-value=1.5e-24  Score=213.04  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=140.9

Q ss_pred             hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304        152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN  231 (537)
Q Consensus       152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t  231 (537)
                      -+.+++++..|++...                .+-.+++|.+++|++++|+|+||||||||+++|+|.    +.|+.|  
T Consensus        16 ~I~~~nvsf~Y~~~~~----------------~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl----~~p~~G--   73 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEA----------------PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF----YDVTSG--   73 (255)
T ss_dssp             CEEEEEEEECSCSSSC----------------CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS----SCCSEE--
T ss_pred             EEEEEEEEEEeCCCCC----------------cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc----CCcccc--
Confidence            4677888887764321                123456788899999999999999999999999999    999999  


Q ss_pred             eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCcc
Q psy16304        232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLV  306 (537)
Q Consensus       232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~  306 (537)
                        +|.++| .++..++.       ..+++.+++|+|++.++.. ..+++.+... ...++...+.+..   +++..++  
T Consensus        74 --~I~i~g-~~i~~~~~-------~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp--  141 (255)
T d2hyda1          74 --QILIDG-HNIKDFLT-------GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP--  141 (255)
T ss_dssp             --EEEETT-EEGGGSCH-------HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTST--
T ss_pred             --ccccCC-EEcccCCH-------HHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhcc--
Confidence              999997 54433222       3345889999999987754 2222211111 1111100000000   0000110  


Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh-cCCE
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG-TVSQ  381 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~-~~~~  381 (537)
                               -|+...- ......|||||+||+    ++||+++. +  |++++||  |++++..  ..+++.+.+ ..+.
T Consensus       142 ---------~gl~t~i-~~~g~~LSgGq~QRi----~iARal~~-~--p~ililDEpts~LD~~t~~~i~~~l~~l~~~~  204 (255)
T d2hyda1         142 ---------QGYDTEV-GERGVKLSGGQKQRL----SIARIFLN-N--PPILILDEATSALDLESESIIQEALDVLSKDR  204 (255)
T ss_dssp             ---------TGGGCBC-CGGGTTSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS
T ss_pred             ---------ccccchh-cCCCCCcCHHHHHHH----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHhcCC
Confidence                     0111111 112456999999999    99999997 5  8999999  9999433  233343322 1244


Q ss_pred             EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304        382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN  418 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~  418 (537)
                      +++++ +|+......++ +++|++|+++..|+++++.+
T Consensus       205 TvI~i-tH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         205 TTLIV-AHRLSTITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             EEEEE-CSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEE-eCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            66777 89988887766 99999999999999999854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.9e-22  Score=199.49  Aligned_cols=184  Identities=15%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304        186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV  265 (537)
Q Consensus       186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v  265 (537)
                      -.+++|.+.+|+++||+||||||||||+++|+|.    +.|+.|    .|.++|                     .++++
T Consensus        52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl----~~p~~G----~I~~~g---------------------~i~~v  102 (281)
T d1r0wa_          52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE----LEASEG----IIKHSG---------------------RVSFC  102 (281)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS----SCCSEE----EEECCS---------------------CEEEE
T ss_pred             EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC----CcCCCc----EEEECC---------------------EEEEE
Confidence            3467788999999999999999999999999999    999999    888776                     15667


Q ss_pred             ccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304        266 SQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT  341 (537)
Q Consensus       266 ~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t  341 (537)
                      +|++.+++. ..+.+.+....+..++..+.+..   ..+..+...     .-..+|.       ....|||||+||+   
T Consensus       103 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-----~~~~~~~-------~~~~LSgGqkQRv---  167 (281)
T d1r0wa_         103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQ-----DNTVLGE-------GGVTLSGGQRARI---  167 (281)
T ss_dssp             CSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTG-----GGCEECT-------TCTTSCHHHHHHH---
T ss_pred             eccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhh-----hhhhhhh-------hccCCCHHHHHHH---
Confidence            777665543 11111100000000000000000   000000000     0001221       1346999999999   


Q ss_pred             cccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc--CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEeccc
Q psy16304        342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAK  414 (537)
Q Consensus       342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nk  414 (537)
                       ++|++++. +  |++++||  |++++..  ..+++.+...  .+.+++++ +|+.+.+..++ +++|++|+++..|++.
T Consensus       168 -~lARaL~~-~--p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~i-tH~~~~l~~aDrI~vl~~G~i~~~Gt~~  242 (281)
T d1r0wa_         168 -SLARAVYK-D--ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV-TSKMEHLRKADKILILHQGSSYFYGTFS  242 (281)
T ss_dssp             -HHHHHHHS-C--CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEE-CSCHHHHHTCSEEEEEETTEEEEEECHH
T ss_pred             -HHHHHHHh-C--ccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE-echHHHHHhCCEEEEEECCEEEEECCHH
Confidence             99999996 5  8999999  9999643  4455554332  34566777 78887776655 9999999999999999


Q ss_pred             chhh
Q psy16304        415 NLSN  418 (537)
Q Consensus       415 dl~~  418 (537)
                      ++.+
T Consensus       243 eL~~  246 (281)
T d1r0wa_         243 ELQS  246 (281)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.6e-22  Score=195.99  Aligned_cols=188  Identities=14%  Similarity=0.111  Sum_probs=121.0

Q ss_pred             cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304        188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  267 (537)
Q Consensus       188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q  267 (537)
                      .++|.+++|+++||+||||||||||+++|+|.    . |+.|    +|.++| .++..|     .  ...+....++++|
T Consensus        17 ~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl----~-~~~G----~I~~~g-~~i~~~-----~--~~~~~~~~~~~~~   79 (231)
T d1l7vc_          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----T-SGKG----SIQFAG-QPLEAW-----S--ATKLALHRAYLSQ   79 (231)
T ss_dssp             SEEEEEETTCEEECBCCTTSSHHHHHHHHHTS----C-CCSS----EEEESS-SBGGGS-----C--HHHHHHHEEEECS
T ss_pred             CEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----C-CCce----EEEECC-EECCcC-----C--HHHHHhhceeeec
Confidence            35678889999999999999999999999997    4 6889    888887 222111     1  1123345677777


Q ss_pred             CCCCCCCccceeeEEeecCcccccCCcccccccCc-CCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304        268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH-LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR  346 (537)
Q Consensus       268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~-l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~  346 (537)
                      .........                +.+.+..... ..........+..+|+.... ...+.+|||||+||+    ++|+
T Consensus        80 ~~~~~~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~LSgG~~Qrv----~iA~  138 (231)
T d1l7vc_          80 QQTPPFATP----------------VWHYLTLHQHDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRV----RLAA  138 (231)
T ss_dssp             CCCCCSSCB----------------HHHHHHHHCSCTTCHHHHHHHHHHTTCTTTT-TSBGGGCCHHHHHHH----HHHH
T ss_pred             cccCCcccc----------------HHHHhhhccchhhHHHHHHHHHHhcCCHhHh-CcChhhcCHHHHHHH----HHHH
Confidence            654211110                0110100000 00000111222345665554 344889999999999    9999


Q ss_pred             ceecc-----CCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304        347 ARVEY-----GNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS  412 (537)
Q Consensus       347 all~~-----~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~  412 (537)
                      ++++.     ++ |++++||  |+|++     .+..+++.+.++ +.+++++ +||+......+  +++|++|++++.|+
T Consensus       139 al~~~~p~~~p~-p~llllDEPt~gLD~~~~~~i~~~i~~l~~~-g~tii~v-tHdl~~~~~~~dri~vl~~G~iv~~G~  215 (231)
T d1l7vc_         139 VVLQITPQANPA-GQLLLLDEPMNSLDVAQQSALDKILSALCQQ-GLAIVMS-SHDLNHTLRHAHRAWLLKGGKMLASGR  215 (231)
T ss_dssp             HHHHHCTTTCTT-CCEEEESSCSTTCCHHHHHHHHHHHHHHHHT-TCEEEEC-CCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred             HHHhhCcccCCC-CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHHCCEEEEEECCEEEEECC
Confidence            98852     23 7999999  99993     222233454444 4566666 89988776544  99999999999998


Q ss_pred             ccch
Q psy16304        413 AKNL  416 (537)
Q Consensus       413 nkdl  416 (537)
                      ++++
T Consensus       216 ~~ev  219 (231)
T d1l7vc_         216 REEV  219 (231)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8887

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=2.7e-20  Score=176.43  Aligned_cols=160  Identities=11%  Similarity=0.120  Sum_probs=103.6

Q ss_pred             ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      .++++.+++|+++||+||||||||||+++|+|.    +.|++|    +|.++| ..+        ...    +..+++++
T Consensus        18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl----~~p~~G----~I~~~g-~~i--------~~~----~~~i~~~~   76 (200)
T d1sgwa_          18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY----LKPLKG----EIIYNG-VPI--------TKV----KGKIFFLP   76 (200)
T ss_dssp             EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EEG--------GGG----GGGEEEEC
T ss_pred             eceEEEEcCCCEEEEECCCCChHHHHHHHHhcc----cccCCC----EEEECC-Eeh--------hHh----cCcEEEEe
Confidence            456788889999999999999999999999999    999999    999987 332        122    25688888


Q ss_pred             cCCCCCCCccceeeEEeecCcccccCCccccccc---CcCCc-cccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304        267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA---THLPL-VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV  342 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~---~~l~~-~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti  342 (537)
                      |+..+....+.                .+.+...   ..... ..+....+..+++.+.  ...+.+|||||+||+    
T Consensus        77 ~~~~~~~~~t~----------------~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LSgG~~qrv----  134 (200)
T d1sgwa_          77 EEIIVPRKISV----------------EDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRV----  134 (200)
T ss_dssp             SSCCCCTTSBH----------------HHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHH----
T ss_pred             ecccCCCCcCH----------------HHHHHHHHHhcCCccCHHHHHHHHHHcCCccc--ccccCcCCCcHHHHH----
Confidence            88764433221                0111000   00000 0001111223333322  223789999999999    


Q ss_pred             ccccceeccCCceEEEEEe--cCch--hhHHHHHH---HHHhcCCEEEEEEeCCCcch
Q psy16304        343 GFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWK---QYLGTVSQTLLVSHSLSGRP  393 (537)
Q Consensus       343 ~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~---~~~~~~~~vIlVvdshd~~~  393 (537)
                      +++++++. +  |++++||  |+|+  .....+++   ++.++ .++++++|+|+...
T Consensus       135 ~ia~al~~-~--~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l~~  188 (200)
T d1sgwa_         135 QLASTLLV-N--AEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSY  188 (200)
T ss_dssp             HHHHHTTS-C--CSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTT
T ss_pred             HHHHHHhc-C--CCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechhhh
Confidence            99999996 5  8999999  9999  33333443   44444 35666666787654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.09  E-value=1.2e-10  Score=105.59  Aligned_cols=110  Identities=31%  Similarity=0.598  Sum_probs=85.1

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+..+++++|++|||||||++.|.+.++....|+.|++...+...+ +.+.+||++|.+.++..++.++..         
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~i~d~~g~~~~~~~~~~~~~~---------   83 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFEN---------   83 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTT---------
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCC-eeEeEeeccccccchhHHHHHhhc---------
Confidence            3567899999999999999999999988888899999999998886 999999999999998888888777         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...+.++..++.....  .......++.++|
T Consensus        84 --~~~ii~v~d~~d~~s~~~~~~~~~~~~~--~~~~~~~pillv~  124 (176)
T d1fzqa_          84 --TDILIYVIDSADRKRFEETGQELTELLE--EEKLSCVPVLIFA  124 (176)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHHHHHHHTT--CGGGTTCCEEEEE
T ss_pred             --cceeEEeeccccccchhhhhhhhhhhhh--hhccCCCeEEEEE
Confidence              999999999 666555444433322211  1122345566664

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.06  E-value=1.4e-10  Score=103.96  Aligned_cols=86  Identities=29%  Similarity=0.682  Sum_probs=71.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      ..+|+++|++|||||||++.|.+..+..+.||.|+....+...+ +.+.+||++|++.++..++.++..           
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~-----------   69 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFES-----------   69 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTT-----------
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccc-cceeeeecCcchhhhhHHHhhhhh-----------
Confidence            35799999999999999999999988888899998888888876 999999999998877666555554           


Q ss_pred             cceeeEEee-cCcccccCC
Q psy16304        276 RTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       276 ~~~il~v~D-s~~~~~~~l  293 (537)
                      .+++++++| ++.......
T Consensus        70 ~~~~i~v~d~~d~~~~~~~   88 (165)
T d1ksha_          70 TDGLIWVVDSADRQRMQDC   88 (165)
T ss_dssp             CSEEEEEEETTCGGGHHHH
T ss_pred             hhcceeeeecccchhHHHH
Confidence            889999999 665544333

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.00  E-value=2.8e-10  Score=102.19  Aligned_cols=107  Identities=28%  Similarity=0.629  Sum_probs=79.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      -+++|+|++|+|||||++.|.+.++ ..+.||.|++...+..++ +.+.+||++|+..+...+..++..           
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~-----------   70 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRG-----------   70 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTT-----------
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeee-EEEEEeeccccccccccccccccc-----------
Confidence            4789999999999999999988777 567899998888888876 999999999998888777776665           


Q ss_pred             cceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        276 RTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       276 ~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                      ++++++++| ++...+.....++..+..  .......++.++|
T Consensus        71 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~pi~lv~  111 (164)
T d1zd9a1          71 VSAIVYMVDAADQEKIEASKNELHNLLD--KPQLQGIPVLVLG  111 (164)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHT--CGGGTTCCEEEEE
T ss_pred             cchhhcccccccccccchhhhhhhhhhh--hhcccCCcEEEEE
Confidence            899999999 666555444433322211  1122345566665

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.93  E-value=2.7e-10  Score=103.93  Aligned_cols=111  Identities=28%  Similarity=0.569  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++..+++++|++|||||||++.+.+..+....||.|+....+...+ ..+.+||++|+..++..+..++..        
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~--------   84 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYAD--------   84 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTT--------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCC-EEEEEEecccccccchhHHhhhcc--------
Confidence            44678899999999999999999999877777899998888888876 999999999998877666666555        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++.....+...++...  +........++.++|
T Consensus        85 ---~~~ii~v~d~~d~~s~~~~~~~l~~~--~~~~~~~~~piliv~  125 (182)
T d1moza_          85 ---TAAVIFVVDSTDKDRMSTASKELHLM--LQEEELQDAALLVFA  125 (182)
T ss_dssp             ---EEEEEEEEETTCTTTHHHHHHHHHHH--TTSSTTSSCEEEEEE
T ss_pred             ---ceeEEEEeeecccccchhHHHHHHHH--HHhhccCCcceEEEE
Confidence               899999999 6665544444333221  111222345566664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.93  E-value=7.1e-10  Score=100.35  Aligned_cols=110  Identities=27%  Similarity=0.548  Sum_probs=81.4

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      ++..+++++|++|||||||++.+.+..+....||.|+......... +.+.+||++|+...+..+..++..         
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~---------   79 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG---------   79 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETT-EEEEEEEESCCGGGHHHHGGGTTT---------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccc-eeeEEecCCCcchhhhHHHhhhcc---------
Confidence            3567899999999999999999998877767788888777777765 999999999999888777766555         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++......+..++....  ........++.++|
T Consensus        80 --~~~ii~v~D~s~~~~~~~~~~~l~~~~--~~~~~~~~piiiv~  120 (173)
T d1e0sa_          80 --TQGLIFVVDCADRDRIDEARQELHRII--NDREMRDAIILIFA  120 (173)
T ss_dssp             --CCEEEEEEETTCGGGHHHHHHHHHHHH--TSGGGTTCEEEEEE
T ss_pred             --cceEEEEEecccchhHHHHHHHHHHHh--hhcccccceeeeee
Confidence              899999999 66655555544332221  11122345555654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.4e-10  Score=100.86  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=66.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      +|+|+|+.|+|||||++.+.+..+....|+.+.+. ..+.+++ .+.+.+||++|++.++.++..++..           
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~-----------   71 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAM-----------   71 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTS-----------
T ss_pred             EEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhh-----------
Confidence            68999999999999999999987655666666433 4566776 5788999999999888888887776           


Q ss_pred             cceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        276 RTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       276 ~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                      ++++++++| ++...+..+..++..+....  .....++.++|
T Consensus        72 ~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~--~~~~~piilvg  112 (168)
T d2gjsa1          72 GDAYVIVYSVTDKGSFEKASELRVQLRRAR--QTDDVPIILVG  112 (168)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHC--C--CCCEEEEE
T ss_pred             hhhhceeccccccccccccccccchhhccc--ccccceEEEee
Confidence            899999999 77766666655444332211  12234566665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.87  E-value=4.3e-10  Score=101.57  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             hhhhcCCCceeeecccccccceeccCCceEEEEEecCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hh
Q psy16304        327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VY  400 (537)
Q Consensus       327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~  400 (537)
                      ...+++|+.++.    +++.+... +  |+++++|-.|.     ......+...++....+++++ +|+......+. ++
T Consensus        79 ~~~~~~~~~~~~----~l~~~~~~-~--~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~-~h~~~~~~~~~~i~  150 (178)
T d1ye8a1          79 YFEELAIPILER----AYREAKKD-R--RKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT-IPIRDVHPLVKEIR  150 (178)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHC-T--TCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEE-CCSSCCSHHHHHHH
T ss_pred             hhhhhhhhhHHH----HHHHHHhc-C--CCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEE-EccHHHHHhhceEE
Confidence            456788888887    66766664 3  89999994333     233444456666656667766 77776555555 78


Q ss_pred             hhcCCcEEEEe
Q psy16304        401 LMSCNCQVYLI  411 (537)
Q Consensus       401 ll~~G~ii~~g  411 (537)
                      .+.+|+++...
T Consensus       151 ~~~~~~i~~v~  161 (178)
T d1ye8a1         151 RLPGAVLIELT  161 (178)
T ss_dssp             TCTTCEEEECC
T ss_pred             EEeCCEEEEEC
Confidence            88888887543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-09  Score=98.34  Aligned_cols=91  Identities=22%  Similarity=0.368  Sum_probs=69.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|++|+|||||++.+.+..+ ....|+.|  +....+.+++ .+++.+||++|++.++..+..++..        
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~--------   77 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS--------   77 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc--------
Confidence            4799999999999999999998766 44556555  4445666665 4778999999999888777776665        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++...+..+.++..
T Consensus        78 ---~~~~i~v~d~~~~~s~~~~~~~~~  101 (171)
T d2ew1a1          78 ---ANALILTYDITCEESFRCLPEWLR  101 (171)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             ---cceEEEeeecccchhhhhhhhhhh
Confidence               899999999 66666655555443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.4e-09  Score=98.14  Aligned_cols=88  Identities=22%  Similarity=0.390  Sum_probs=67.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|+|||||++.+.+..+ ..+.|+.|.+..  .+...+ .+.+.+||++|++++..++..++..        
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~--------   77 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRG--------   77 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhc--------
Confidence            4699999999999999999987765 556777874443  344443 4789999999999888777776665        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++.+.+..+..
T Consensus        78 ---ad~~ilv~d~~~~~s~~~~~~   98 (169)
T d3raba_          78 ---AMGFILMYDITNEESFNAVQD   98 (169)
T ss_dssp             ---CCEEEEEEETTCHHHHHTHHH
T ss_pred             ---CCEEEEEEECccchhhhhhhh
Confidence               899999999 66555544433

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2e-09  Score=96.98  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|+|.+|+|||||++.+.+..+ ..+.||.|... ....+++ .+.+.+||++|+..+...+..++..         
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~---------   73 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISK---------   73 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHH---------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccc---------
Confidence            4799999999999999999998776 55678888443 3344554 4678889999999888777777777         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++.+.+.++..++..+..... .....++.++|
T Consensus        74 --a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilVg  115 (171)
T d2erxa1          74 --GHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVG  115 (171)
T ss_dssp             --CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEE
T ss_pred             --eeEEEEEeecccccchhcccchhhhhhhhhc-cCCCCcEEEEe
Confidence              899999999 777777777665543322211 12344566665

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=7.3e-10  Score=99.47  Aligned_cols=87  Identities=24%  Similarity=0.416  Sum_probs=62.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +++++|.+|||||||++.+++.++ ..+.||.|.+.  ..+.+++ .+.+.+||++|++.++.++..++..         
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---------   74 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG---------   74 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT---------
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc---------
Confidence            689999999999999999988766 55678888444  4455555 5778899999998888777777666         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++...++.+..
T Consensus        75 --~~~~i~v~d~~~~~s~~~~~~   95 (166)
T d1g16a_          75 --AMGIILVYDITDERTFTNIKQ   95 (166)
T ss_dssp             --EEEEEEEEETTCHHHHHTHHH
T ss_pred             --CCEEEEEEECCCccCHHHHHh
Confidence              899999999 66655544443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.1e-09  Score=101.18  Aligned_cols=88  Identities=22%  Similarity=0.377  Sum_probs=67.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|+.|+|||||++.+.+..+ ..+.|+.|.+..  .+.+++ .+.+.+||++|+++++.++..++..        
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~--------   78 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG--------   78 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhcc--------
Confidence            4699999999999999999987765 556788885543  455555 5789999999999887776666655        


Q ss_pred             CCccceeeEEee-cCcccccCCcc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                         ++++++++| ++.+.+.....
T Consensus        79 ---a~~~i~v~d~t~~~s~~~~~~   99 (194)
T d2bcgy1          79 ---SHGIIIVYDVTDQESFNGVKM   99 (194)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHH
T ss_pred             ---CCEEEEEEeCcchhhhhhHhh
Confidence               899999999 65555444443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=4.3e-09  Score=95.83  Aligned_cols=82  Identities=21%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR  276 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~  276 (537)
                      .+++|||..|+|||||++.+...    ..|+.|+....+...+ ..+.+||++|++.++..|..++..           +
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~----~~~t~~~~~~~~~~~~-~~~~i~D~~Gq~~~~~~~~~~~~~-----------~   66 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEG-----------V   66 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH----HSCCCSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTT-----------C
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC----CCCCccEEEEEEEeee-eeeeeeccccccccccchhhcccC-----------C
Confidence            57999999999999999999877    6788898877888876 999999999999999888888777           8


Q ss_pred             ceeeEEee-cCcccccCCc
Q psy16304        277 TCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       277 ~~il~v~D-s~~~~~~~l~  294 (537)
                      +++++++| ++.+++....
T Consensus        67 ~~~i~v~d~~~~~~~~~~~   85 (195)
T d1svsa1          67 TAIIFCVALSDYDLVLAED   85 (195)
T ss_dssp             SEEEEEEEGGGGGCBCSSC
T ss_pred             ceeeeEEeecccchHHHHh
Confidence            99999999 6666554443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=98.71  Aligned_cols=106  Identities=18%  Similarity=0.357  Sum_probs=75.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEE--ECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~--i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++++|++|+|||||++.+++..+ ..+.||.|.......  .++ .+.+.+||++|+..++.+++.++..        
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~--------   75 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ--------   75 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhccc--------
Confidence            4799999999999999999998776 556788885544333  333 5889999999998877666666665        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++.+.++++.+++......    ....++.++|
T Consensus        76 ---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~----~~~~piilvg  114 (170)
T d1i2ma_          76 ---AQCAIIMFDVTSRVTYKNVPNWHRDLVRV----CENIPIVLCG  114 (170)
T ss_dssp             ---CCEEEEEEETTSGGGGTTHHHHHHHHHHH----HCSCCEEEEE
T ss_pred             ---ccchhhccccccccccchhHHHHHHHhhc----cCCCceeeec
Confidence               899999999 7887777776655433211    1245666666

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-09  Score=97.46  Aligned_cols=110  Identities=19%  Similarity=0.283  Sum_probs=76.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+|+|+|+.|+|||||++.+.+..+ ..+.||.|.. ...+.+++ .+.+.+||++|...+..+...++..       
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~-------   75 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID-------   75 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSS-------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhh-------
Confidence            346899999999999999999987666 5567888844 34566776 5788899999988766544444443       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          ++++++++| ++.+.+..+..++..+..  .......++.++|
T Consensus        76 ----~d~~ilv~d~~~~~s~~~~~~~~~~i~~--~~~~~~~piilvg  116 (167)
T d1xtqa1          76 ----INGYILVYSVTSIKSFEVIKVIHGKLLD--MVGKVQIPIMLVG  116 (167)
T ss_dssp             ----CCEEEEEEETTCHHHHHHHHHHHHHHHH--HHCSSCCCEEEEE
T ss_pred             ----hhhhhhhcccchhhhhhhhhhhhhhhhh--cccccccceeeec
Confidence                899999999 777766666554433321  1122345566665

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.6e-09  Score=95.40  Aligned_cols=91  Identities=16%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+|||.+|+|||||++.+.+..+ ..+.||.| +....+.+++ .+.+.+||++|...+......++..        
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--------   76 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT--------   76 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHH--------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccc--------
Confidence            35899999999999999999987766 56778888 3445566666 4689999999998887777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++.+.+..+..+.
T Consensus        77 ---~~~~ilv~d~~~~~s~~~~~~~~   99 (171)
T d2erya1          77 ---GEGFLLVFSVTDRGSFEEIYKFQ   99 (171)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ---cceEEEeeccccccchhhHHHHh
Confidence               899999999 7766666665544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=4.2e-09  Score=94.75  Aligned_cols=89  Identities=20%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++++||..|+|||||++.+.+.+| ..+.||.|.  ....+...+ .+.+.+||++|++.+..++..++..        
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~--------   75 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRN--------   75 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhc--------
Confidence            4799999999999999999988776 567788884  345566665 4789999999999887777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++...+.++..+
T Consensus        76 ---~~~~ilv~d~~~~~s~~~~~~~   97 (170)
T d1ek0a_          76 ---AQAALVVYDVTKPQSFIKARHW   97 (170)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ---cceEEEEEeCCcccchhhhhhh
Confidence               899999999 776665555443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.1e-09  Score=95.56  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|+|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..         
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~---------   73 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD---------   73 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT---------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhccc---------
Confidence            4789999999999999999998776 45678887322 3344544 5789999999999888777766665         


Q ss_pred             CccceeeEEee-cCcccccCCc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~  294 (537)
                        ++++++++| ++.+.++++.
T Consensus        74 --~~~~ilv~d~~~~~Sf~~~~   93 (177)
T d1kmqa_          74 --TDVILMCFSIDSPDSLENIP   93 (177)
T ss_dssp             --CSEEEEEEETTCHHHHHHHH
T ss_pred             --chhhhhhcccchhHHHHHHH
Confidence              899999999 6666555443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.9e-09  Score=96.34  Aligned_cols=109  Identities=16%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      -.+|+|||..|+|||||++.+.+..+ ..+.|+.+ +....+.++| .+.+.+||++|+.++...+..++..        
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~--------   77 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA--------   77 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH--------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhcc--------
Confidence            46899999999999999999988766 55667665 2335566776 5788899999999887777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...+..+..++..+...  ......++.++|
T Consensus        78 ---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ilvg  118 (173)
T d2fn4a1          78 ---GHGFLLVFAINDRQSFNEVGKLFTQILRV--KDRDDFPVVLVG  118 (173)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHHHHHHHH--HTSSCCCEEEEE
T ss_pred             ---ceeeeeecccccccccchhhhhhHHHHHH--hccCCCceEEEE
Confidence               899999999 7766666555544333211  112345566665

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.3e-09  Score=96.66  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +-.+++++|+.|+|||||++.+.+.++....|+.+.+ ...+.++| .+.+.+||++|+...+     ++..        
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~--------   70 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGW--------   70 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHH--------
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccc--------
Confidence            3478999999999999999999998886667776633 34566775 5778999999987543     3444        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEecc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGL  318 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl  318 (537)
                         ++++++|+| ++...++++..+..++..+........++.++|.
T Consensus        71 ---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~  114 (175)
T d2bmja1          71 ---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT  114 (175)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEE
T ss_pred             ---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEee
Confidence               889999999 7777666666655554333333333445666653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.77  E-value=3.7e-09  Score=95.26  Aligned_cols=108  Identities=18%  Similarity=0.320  Sum_probs=76.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++|+|..|+|||||++.+++.+| ..+.||.|.. ...+.+++ .+.+.+||++|+.+...++..++..         
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~---------   75 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS---------   75 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH---------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccc---------
Confidence            4799999999999999999987776 5678888843 34556665 5788899999998887777777777         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...++.+..++..+...  ......++.++|
T Consensus        76 --~~~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piiivg  116 (168)
T d1u8za_          76 --GEGFLCVFSITEMESFAATADFREQILRV--KEDENVPFLLVG  116 (168)
T ss_dssp             --CSEEEEEEETTCHHHHHHHHHHHHHHHHH--HCCTTSCEEEEE
T ss_pred             --cceeEEEeeccchhhhhhHHHHHHHHHHh--hCCCCCcEEEEe
Confidence              899999999 7777666665554433221  112344566665

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.6e-09  Score=94.19  Aligned_cols=90  Identities=18%  Similarity=0.320  Sum_probs=69.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+++|+|.+|+|||||++.+.+.++ ....|+.+  +....+.+++ .+.+.+||++|++.++..+..++..        
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~--------   76 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG--------   76 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcC--------
Confidence            4699999999999999999988766 44556555  3334555665 4689999999999888877777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++.+.+..+..++
T Consensus        77 ---~d~~ilv~d~~~~~s~~~~~~~~   99 (166)
T d1z0fa1          77 ---AAGALMVYDITRRSTYNHLSSWL   99 (166)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ---CcEEEEEeccCchHHHHHHHHHH
Confidence               899999999 6666665555444

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.1e-09  Score=94.97  Aligned_cols=92  Identities=22%  Similarity=0.361  Sum_probs=69.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+++|..|+|||||++.+.+.++ ..+.++.+.  ....+.+++ .+.+.+||++|+++++..++.++..        
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------   79 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG--------   79 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT--------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhc--------
Confidence            5799999999999999999998766 455566653  334455665 5789999999999888777777766        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTS  299 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~  299 (537)
                         ++++++++| ++...+..+..++..
T Consensus        80 ---~~~ii~v~d~~~~~s~~~~~~~~~~  104 (177)
T d1x3sa1          80 ---AQGVILVYDVTRRDTFVKLDNWLNE  104 (177)
T ss_dssp             ---CCEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             ---CCEEEEEEECCCccccccchhhhhh
Confidence               899999999 766666555554433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.7e-09  Score=93.73  Aligned_cols=106  Identities=20%  Similarity=0.348  Sum_probs=76.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +|+|||..|+|||||++.+.+.++ ..+.|+.|....  ....++ .+.+.+||++|++.++..+..++..         
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~---------   72 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRD---------   72 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTT---------
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhc---------
Confidence            799999999999999999998776 456777775443  333333 5788999999999888877777776         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...+.++..++.....   ......++.++|
T Consensus        73 --~~~~ilv~d~~~~~s~~~i~~~~~~~~~---~~~~~~~iilvg  112 (164)
T d1yzqa1          73 --SAAAVVVYDITNVNSFQQTTKWIDDVRT---ERGSDVIIMLVG  112 (164)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHHHHHHH---HHTTSSEEEEEE
T ss_pred             --cceEEEeeccccccchhhhHhhHHHHHH---hcCCCceEEEEe
Confidence              899999999 777666666554433221   112345566665

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=5.1e-09  Score=94.42  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      -.+++++|+.|+|||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|.+.+...+..++..        
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--------   75 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT--------   75 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH--------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhh--------
Confidence            36799999999999999999988766 5567887733 23455554 5788999999999887777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++++.+.++..++..+...  ......++.++|
T Consensus        76 ---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~--~~~~~~p~ilvg  116 (169)
T d1x1ra1          76 ---GDGFLIVYSVTDKASFEHVDRFHQLILRV--KDRESFPMILVA  116 (169)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHHHHHHHH--HTSSCCCEEEEE
T ss_pred             ---ccEEEEecccccchhhhccchhhHHHHhh--ccccCccEEEEe
Confidence               899999999 7877777776655433221  122344555665

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.6e-09  Score=93.77  Aligned_cols=90  Identities=18%  Similarity=0.340  Sum_probs=68.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEE--EEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRAR--VEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~--i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|+|..|+|||||++.+.+.++ ..+.|+.+.+...  +..++ ...+.+||++|++++..+++.++..        
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--------   77 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG--------   77 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhh--------
Confidence            4699999999999999999987766 5567787755433  33333 4688999999999888777776665        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++.+.+.++..++
T Consensus        78 ---~~~~i~v~d~~~~~s~~~~~~~~  100 (174)
T d2bmea1          78 ---AAGALLVYDITSRETYNALTNWL  100 (174)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             ---CCEEEEEEecccchhHHHHhhhh
Confidence               899999999 6666555554443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5e-09  Score=94.02  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=79.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|||.+|+|||||++.+.+..| ..+.|+.|... ..+.+++ .+.+.+||++|+..+...+..++..         
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~---------   74 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKN---------   74 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHH---------
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccc---------
Confidence            5799999999999999999998877 45678888333 3334443 5889999999999888777777777         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...++++..++..+...  ......++.++|
T Consensus        75 --~~~~ilv~d~~~~~sf~~~~~~~~~~~~~--~~~~~~p~ilvg  115 (167)
T d1c1ya_          75 --GQGFALVYSITAQSTFNDLQDLREQILRV--KDTEDVPMILVG  115 (167)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHHHHHHHH--HCCSCCCEEEEE
T ss_pred             --cceeEEeeeccchhhhHhHHHHHHHHHHh--cCCCCCeEEEEE
Confidence              899999999 7777777776655443221  112344566665

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.4e-09  Score=95.57  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|+|+.|+|||||++.+.+..| ..+.||.|... ....+++ .+.+.+||++|+++++..+..++..         
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~---------   74 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQ---------   74 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT---------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccc---------
Confidence            4799999999999999999988776 56778888433 3334444 4689999999999887766666655         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++.+.++++.+
T Consensus        75 --~~~~ilv~d~~~~~Sf~~~~~   95 (191)
T d2ngra_          75 --TDVFLVCFSVVSPSSFENVKE   95 (191)
T ss_dssp             --CSEEEEEEETTCHHHHHHHHH
T ss_pred             --cceeecccccchHHHHHHHHH
Confidence              899999999 77776655543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=4.5e-09  Score=94.02  Aligned_cols=106  Identities=20%  Similarity=0.327  Sum_probs=75.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      -+|+|+|++|+|||||++.+.+..+ ..+.||.|.+.  ..+..++ .+.+.+||++|+.++...+..++..        
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--------   74 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG--------   74 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhcc--------
Confidence            3689999999999999999987666 56778888443  3344444 4788999999998777666666665        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...++++..++..+...    ....++.++|
T Consensus        75 ---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~iilVg  113 (164)
T d1z2aa1          75 ---AQACVLVFSTTDRESFEAISSWREKVVAE----VGDIPTALVQ  113 (164)
T ss_dssp             ---CCEEEEEEETTCHHHHHTHHHHHHHHHHH----HCSCCEEEEE
T ss_pred             ---CceEEEEEeccchhhhhhccccccccccc----CCCceEEEee
Confidence               899999999 7777666665544333211    1234556665

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.2e-09  Score=92.88  Aligned_cols=109  Identities=17%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      ..+|+|||++|+|||||++.+++..+ ..+.|+.|.. ...+.+++ .+.+.+||++|+.........++..        
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~--------   74 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN--------   74 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH--------
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhc--------
Confidence            46899999999999999999998776 5567887732 34455554 5788999999998877777777776        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...+.++..+...+...  ......++.++|
T Consensus        75 ---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilvg  115 (167)
T d1kaoa_          75 ---GQGFILVYSLVNQQSFQDIKPMRDQIIRV--KRYEKVPVILVG  115 (167)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHHHHHHHH--TTTSCCCEEEEE
T ss_pred             ---ccceeeeeeecchhhhhhhhchhhhhhhh--ccCCCCCEEEEE
Confidence               899999999 7776666555544332211  112345566665

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.3e-09  Score=95.27  Aligned_cols=107  Identities=15%  Similarity=0.289  Sum_probs=73.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++++||++|||||||++.+.+..+ ..+.++.|..  ...+.+++ .+.+.+||++|++++...+...+..        
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~--------   76 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG--------   76 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhc--------
Confidence            4699999999999999999988765 4455555533  34455665 4688999999998877666666655        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++.+.+..+..++..+...   .....++.++|
T Consensus        77 ---~~~~i~v~d~~~~~S~~~~~~~~~~i~~~---~~~~~piilvg  116 (175)
T d2f9la1          77 ---AVGALLVYDIAKHLTYENVERWLKELRDH---ADSNIVIMLVG  116 (175)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEE
T ss_pred             ---cCeEEEEEECCCcccchhHHHHHHHHHHh---cCCCCcEEEEE
Confidence               889999999 7766666665554433221   22345666765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.4e-09  Score=98.52  Aligned_cols=89  Identities=19%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|||..|+|||||++.+++..+ ....|+.|.  ....+.+++ .+.+.+||++|++.+...+..++..        
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~--------   78 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG--------   78 (173)
T ss_dssp             EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccC--------
Confidence            4699999999999999999998765 455677773  345566665 4778889999998777665555544        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++...+..+..+
T Consensus        79 ---~~~~i~v~d~~~~~s~~~~~~~  100 (173)
T d2fu5c1          79 ---AMGIMLVYDITNEKSFDNIRNW  100 (173)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ---CCEEEEEEECCChhhHHHHHHH
Confidence               899999999 666555444443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.2e-09  Score=94.53  Aligned_cols=90  Identities=16%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|+|.+|+|||||++.+.+..| ..+.||.|...  ..+..++ ...+.+||++|+..++.++..++..        
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--------   75 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD--------   75 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccC--------
Confidence            4789999999999999999988776 55678888433  3444444 5889999999998877666655554        


Q ss_pred             CCccceeeEEee-cCcccccCCcccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                         ++++++++| ++.+.++++..++
T Consensus        76 ---~~~~i~v~d~~~~~Sf~~~~~~~   98 (167)
T d1z08a1          76 ---SNGAILVYDITDEDSFQKVKNWV   98 (167)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHHH
T ss_pred             ---CceeEEEEeCCchhHHHhhhhhh
Confidence               899999999 7777766665544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9e-09  Score=93.89  Aligned_cols=91  Identities=21%  Similarity=0.403  Sum_probs=68.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-----------cEEEEEeecCCCchhhHHHHhhh
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-----------~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      .+|+|+|++|+|||||++.+.+.++ ..+.++.+.+  ...+.+++           .+.+.+||++|+++++.++..++
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~   85 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF   85 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHH
Confidence            4699999999999999999998776 4556666632  33333321           36789999999999988888877


Q ss_pred             hccccCCCCCCCccceeeEEee-cCcccccCCccccc
Q psy16304        263 GTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       263 ~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                      ..           ++++++++| ++...++.+..++.
T Consensus        86 ~~-----------~~~~i~v~d~~~~~s~~~~~~~~~  111 (186)
T d2f7sa1          86 RD-----------AMGFLLMFDLTSQQSFLNVRNWMS  111 (186)
T ss_dssp             TT-----------CCEEEEEEETTCHHHHHHHHHHHH
T ss_pred             hc-----------CCEEEEEEeccccccceeeeeccc
Confidence            76           899999999 66666555554443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-08  Score=91.29  Aligned_cols=108  Identities=18%  Similarity=0.304  Sum_probs=77.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|||++|||||||++.+++..+ ..+.|+.|... ..+...+ .+.+.+||++|.+.+......++..         
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~---------   74 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---------   74 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHH---------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhc---------
Confidence            5799999999999999999998776 45678888433 2334444 5788999999999887777777776         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++...++.+..++..+....  .....++.++|
T Consensus        75 --~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~  115 (166)
T d1ctqa_          75 --GEGFLCVFAINNTKSFEDIHQYREQIKRVK--DSDDVPMVLVG  115 (166)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TCSSCCEEEEE
T ss_pred             --ccccceeecccccccHHHHHHHHHHHHHhc--CCCCCeEEEEe
Confidence              889999999 77776666666554432221  12234566665

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=6e-09  Score=95.34  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+|+|+|..|+|||||++.++...| ..+.||.|... ..+.+.+ .+.+.+||++|++.++..+..++..         
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~---------   80 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM---------   80 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT---------
T ss_pred             EEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccc---------
Confidence            5799999999999999999988766 55678887333 3344444 5788999999998887666666665         


Q ss_pred             CccceeeEEee-cCcccccCC
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGI  293 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l  293 (537)
                        ++++++++| ++.+.++++
T Consensus        81 --a~~~ilv~d~t~~~Sf~~~   99 (185)
T d2atxa1          81 --TDVFLICFSVVNPASFQNV   99 (185)
T ss_dssp             --CSEEEEEEETTCHHHHHHH
T ss_pred             --cceeeeccccchHHHHHHH
Confidence              899999999 776665443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.7e-08  Score=88.33  Aligned_cols=80  Identities=30%  Similarity=0.559  Sum_probs=64.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +++|||++|||||||++.|.+.+++.+.||.|++...+...+ .....||+.+.......++.+...           ++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   69 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPE-----------VN   69 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTT-CCEEEEECCCSGGGGGGGGGGCTT-----------CS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCC-eeEEEEeeccchhhhhhHhhhhhh-----------ee
Confidence            689999999999999999999988888999998887777765 778899998877665544454444           77


Q ss_pred             eeeEEee-cCccc
Q psy16304        278 CQVYLIM-CGVHQ  289 (537)
Q Consensus       278 ~il~v~D-s~~~~  289 (537)
                      +.++++| ++...
T Consensus        70 ~~~~~~d~~~~~~   82 (166)
T d2qtvb1          70 GIVFLVDAADPER   82 (166)
T ss_dssp             EEEEEEETTCGGG
T ss_pred             eeeeeccccchhh
Confidence            8888888 55443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=8.2e-09  Score=92.84  Aligned_cols=89  Identities=15%  Similarity=0.221  Sum_probs=69.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEE--ECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~--i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|++||..|+|||||++.+.+..+ ..+.|+.|.+.....  ..+ .+.+.+||++|++.+...+..++..        
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--------   78 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG--------   78 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhC--------
Confidence            4799999999999999999997776 567888886554333  333 4788999999999888888777776        


Q ss_pred             CCccceeeEEee-cCcccccCCccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDE  296 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~  296 (537)
                         ++++++++| ++.+.++++..+
T Consensus        79 ---~~~~ilv~d~~~~~s~~~~~~~  100 (170)
T d1r2qa_          79 ---AQAAIVVYDITNEESFARAKNW  100 (170)
T ss_dssp             ---CSEEEEEEETTCHHHHHHHHHH
T ss_pred             ---cceEEEEeccchhhHHHHHHHH
Confidence               889999999 766665554443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=8.1e-09  Score=93.07  Aligned_cols=90  Identities=18%  Similarity=0.304  Sum_probs=56.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEE--CC--cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEY--GN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i--~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      +++|||++|||||||++.+.+.++ ..+.|+.|........  .+  ...+.+||++|++.....+..++..        
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--------   75 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG--------   75 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT--------
T ss_pred             EEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhc--------
Confidence            689999999999999999998766 4567777744433333  22  3678999999987766555444444        


Q ss_pred             CCccceeeEEee-cCcccccCCccccc
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELT  298 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~  298 (537)
                         ++++++++| ++...+..+..++.
T Consensus        76 ---~~~~ilv~d~~~~~s~~~~~~~~~   99 (175)
T d1ky3a_          76 ---ADCCVLVYDVTNASSFENIKSWRD   99 (175)
T ss_dssp             ---CCEEEEEEETTCHHHHHTHHHHHH
T ss_pred             ---cceEEEEeecccccccchhhhcch
Confidence               899999999 66666665555443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=9.7e-09  Score=93.56  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++|+|..|+|||||++.+....| ..+.||.| +....+.+++ .+.+.+||++|++.+...+..++..         
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---------   73 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD---------   73 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTT---------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhh---------
Confidence            4789999999999999999987766 55778877 3333445544 5788999999998777555555544         


Q ss_pred             CccceeeEEee-cCcccccCCcc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                        ++++++++| ++.+.++.+..
T Consensus        74 --~~~~ilv~d~~~~~Sf~~~~~   94 (179)
T d1m7ba_          74 --SDAVLICFDISRPETLDSVLK   94 (179)
T ss_dssp             --CSEEEEEEETTCHHHHHHHHH
T ss_pred             --hhhhheeeecccCCCHHHHHH
Confidence              899999999 77766554443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.3e-08  Score=91.47  Aligned_cols=88  Identities=18%  Similarity=0.366  Sum_probs=59.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccccCceeeeeEE--EEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVGFNRAR--VEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G~t~~~--i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      .+++++|+.|||||||++.+.+.++  ....++.|.+...  +...+ .+.+.+||++|++.++.++..++..       
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~-------   79 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD-------   79 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG-------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcC-------
Confidence            4699999999999999999877655  2345666755544  44555 4688999999998887766666655       


Q ss_pred             CCCccceeeEEee-cCcccccCCcc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPD  295 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~  295 (537)
                          ++++++++| ++.+.+..+..
T Consensus        80 ----~d~~i~v~d~~~~~s~~~~~~  100 (170)
T d2g6ba1          80 ----AHALLLLYDVTNKASFDNIQA  100 (170)
T ss_dssp             ----CSEEEEEEETTCHHHHHTHHH
T ss_pred             ----CceeEEEecCCcccchhhhhh
Confidence                899999999 66655554443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.2e-08  Score=91.42  Aligned_cols=91  Identities=22%  Similarity=0.361  Sum_probs=69.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEE--EECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--EYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i--~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      ..+|+|||.+|+|||||++.+.+.+| ..+.||.+.+....  ..++ ...+.+||++|++.++.++..++..       
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-------   76 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG-------   76 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTT-------
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhh-------
Confidence            35799999999999999999998776 56678888554333  3333 4567899999999888777777666       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                          ++++++++| ++.+.+..+..+.
T Consensus        77 ----~~~~i~v~d~~~~~s~~~~~~~~   99 (167)
T d1z0ja1          77 ----SAAAIIVYDITKEETFSTLKNWV   99 (167)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHHHHH
T ss_pred             ----ccceEEEeeechhhhhhhHHHhh
Confidence                899999999 7666665555443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.3e-08  Score=89.85  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      .+++|||+.|+|||||++.+.+..| ..+.||.|... ..+..++ .+.+.+||++|...+. ....++..         
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~---------   72 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRW---------   72 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHH---------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcc---------
Confidence            5799999999999999999998876 56789988543 2334444 4788999999987654 33344554         


Q ss_pred             CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                        ++++++++| ++.+.+..+..+.......  ......++.++|
T Consensus        73 --~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilvg  113 (168)
T d2atva1          73 --GEGFVLVYDITDRGSFEEVLPLKNILDEI--KKPKNVTLILVG  113 (168)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHHHHHHHH--HTTSCCCEEEEE
T ss_pred             --cccceeecccCCccchhhhhhhccccccc--ccccCcceeeec
Confidence              889999999 7777666665433222111  112345566665

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=3.3e-08  Score=90.11  Aligned_cols=78  Identities=24%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR  276 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~  276 (537)
                      .+++|||..|||||||++.+....+. +.||.|+...++.... ..+..||++|++.++..|..++..           +
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~-----------~   69 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQS-VIFRMVDVGGQRSERRKWIHCFEN-----------V   69 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSS-CEEEEEECCCSTTGGGGGGGGCSS-----------C
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccc-eeeeeccccccccccccccccccc-----------c
Confidence            57999999999999999999877664 5799998888887775 999999999999998888777665           7


Q ss_pred             ceeeEEee-cCc
Q psy16304        277 TCQVYLIM-CGV  287 (537)
Q Consensus       277 ~~il~v~D-s~~  287 (537)
                      +.+++++| ++.
T Consensus        70 ~~~i~~~~~~~~   81 (200)
T d2bcjq2          70 TSIMFLVALSEY   81 (200)
T ss_dssp             SEEEEEEEGGGG
T ss_pred             ceeeEeeeccch
Confidence            78888888 444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.60  E-value=2.1e-08  Score=87.94  Aligned_cols=82  Identities=30%  Similarity=0.681  Sum_probs=61.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT  277 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~  277 (537)
                      +|+|+|++|||||||++.|++.++....++........... .+.+.+||++|....+..+..++..           .+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~-----------~~   69 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQN-----------TQ   69 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECS-SCEEEEEECCCCGGGHHHHHHHTTT-----------CS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeee-eEEEEEecCCCcccchhhhhhhhcc-----------ce
Confidence            68999999999999999999876644444333333344444 4899999999998887777776666           88


Q ss_pred             eeeEEee-cCccccc
Q psy16304        278 CQVYLIM-CGVHQVS  291 (537)
Q Consensus       278 ~il~v~D-s~~~~~~  291 (537)
                      ++++++| .+.....
T Consensus        70 ~~i~~~d~~~~~~~~   84 (160)
T d1r8sa_          70 GLIFVVDSNDRERVN   84 (160)
T ss_dssp             EEEEEEETTCGGGHH
T ss_pred             eEEEEEEecChHHHH
Confidence            8999999 5554433

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.3e-08  Score=90.97  Aligned_cols=89  Identities=17%  Similarity=0.227  Sum_probs=67.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG  271 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l  271 (537)
                      +..+++|||..|+|||||++.+.+..| ..+.||.|.. ...+..++ .+.+.+||++|++.+...+..++..       
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~-------   76 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ-------   76 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT-------
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccc-------
Confidence            346899999999999999999998776 5667888833 33455554 5778999999998877666555555       


Q ss_pred             CCCccceeeEEee-cCcccccCCc
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIP  294 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~  294 (537)
                          ++++++++| ++.+.++++.
T Consensus        77 ----~~~~ilv~d~~~~~sf~~i~   96 (183)
T d1mh1a_          77 ----TDVSLICFSLVSPASFENVR   96 (183)
T ss_dssp             ----CSEEEEEEETTCHHHHHHHH
T ss_pred             ----cceeeeeeccchHHHHHHHH
Confidence                899999999 6666655443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=4.2e-08  Score=92.44  Aligned_cols=77  Identities=25%  Similarity=0.472  Sum_probs=65.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      -.++.|||++|||||||++.+....   ..||.|+....+.+++ +.+..||++|++..+..|..++..           
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~-~~~~~~D~~Gq~~~r~~w~~~~~~-----------   70 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKWIQCFND-----------   70 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETT-EEEEEEECCCSTTTTTGGGGGCTT-----------
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECc-EEEEEEecCccceeccchhhhccc-----------
Confidence            4679999999999999999986431   5699999888888886 999999999999998888777665           


Q ss_pred             cceeeEEee-cCc
Q psy16304        276 RTCQVYLIM-CGV  287 (537)
Q Consensus       276 ~~~il~v~D-s~~  287 (537)
                      ..++++++| ++.
T Consensus        71 ~~~ii~v~d~s~~   83 (221)
T d1azta2          71 VTAIIFVVASSSY   83 (221)
T ss_dssp             CSEEEEEEETTGG
T ss_pred             ccceEEEEEcccc
Confidence            788899999 443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1.5e-08  Score=92.19  Aligned_cols=89  Identities=16%  Similarity=0.300  Sum_probs=65.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEE--CC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEY--GN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +|+|+|.+|+|||||++.+++.++ ..+.||.|.+.....+  .+ .+.+.+||++|.......+...+..         
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~---------   74 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG---------   74 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT---------
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccC---------
Confidence            689999999999999999998776 6677888865544333  22 5788999999987666544444444         


Q ss_pred             CccceeeEEee-cCcccccCCcccc
Q psy16304        274 DSRTCQVYLIM-CGVHQVSGIPDEL  297 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~~~~~l~~~l  297 (537)
                        ++++++++| ++...+..+..++
T Consensus        75 --~~~~i~~~d~~~~~~~~~~~~~~   97 (184)
T d1vg8a_          75 --ADCCVLVFDVTAPNTFKTLDSWR   97 (184)
T ss_dssp             --CSEEEEEEETTCHHHHHTHHHHH
T ss_pred             --ccEEEEeecccchhhhhcchhhH
Confidence              899999999 6666555555544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.6e-08  Score=91.29  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=71.3

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .++++||++|+|||||++.+.+.++ ..+.|+.+.+  .......+ ...+.+||++|+..++..++.++..        
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--------   75 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG--------   75 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhc--------
Confidence            4699999999999999999987765 4455555522  22333443 4788999999998887777776666        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...+..+..++..+..   ......++.++|
T Consensus        76 ---~d~~ilv~d~~~~~sf~~~~~~~~~~~~---~~~~~~piilv~  115 (173)
T d2a5ja1          76 ---AAGALLVYDITRRETFNHLTSWLEDARQ---HSSSNMVIMLIG  115 (173)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHHHHHHH---HSCTTCEEEEEE
T ss_pred             ---cCEEEEEEeecChHHHHhHHHHHHHHHH---hCCCCCeEEEEe
Confidence               899999999 777776666554433322   122345566665

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4e-08  Score=88.52  Aligned_cols=110  Identities=19%  Similarity=0.368  Sum_probs=71.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR  272 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~  272 (537)
                      .+|+|+|++|||||||++.+.+..+ ..+.+|.|.+  ...+..++ .+.+.+||++|....+..+...+..        
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--------   78 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG--------   78 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTT--------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhc--------
Confidence            4699999999999999999987665 4566777633  33444555 4777899999988777666666666        


Q ss_pred             CCccceeeEEee-cCcccccCCcccccccCcCC-ccccCCccEEEec
Q psy16304        273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLP-LVDFRSVPILVLG  317 (537)
Q Consensus       273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~-~~~~~~~~L~llG  317 (537)
                         ++++++++| ++...+..+..++..+..+. .......++.++|
T Consensus        79 ---~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVg  122 (174)
T d1wmsa_          79 ---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG  122 (174)
T ss_dssp             ---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred             ---cceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEec
Confidence               899999999 66655555554443322111 1112235666776

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=3.8e-08  Score=90.01  Aligned_cols=78  Identities=27%  Similarity=0.404  Sum_probs=57.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS  275 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~  275 (537)
                      ..+++|||.+|||||||++.+.-.  ..+.||.|+...++.+.+ ..+..||++|++..+..|..++..           
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~--~~~~pTiG~~~~~~~~~~-~~~~~~D~~gq~~~~~~~~~~~~~-----------   67 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHEYDFEIKN-VPFKMVDVGGQRSERKRWFECFDS-----------   67 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH--HSCCCCSSEEEEEEEETT-EEEEEEEECC-------CTTSCTT-----------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC--CCCCCeeeeEEEEEeeee-eeeeeecccceeeecccccccccc-----------
Confidence            358999999999999999999421  346799998888888886 999999999998887666655554           


Q ss_pred             cceeeEEee-cCc
Q psy16304        276 RTCQVYLIM-CGV  287 (537)
Q Consensus       276 ~~~il~v~D-s~~  287 (537)
                      ..++++++| ++.
T Consensus        68 ~~~~~~~~~~~~~   80 (200)
T d1zcba2          68 VTSILFLVSSSEF   80 (200)
T ss_dssp             CCEEEEEEETTCT
T ss_pred             cceeEEEEEcCCc
Confidence            777888888 443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.56  E-value=4.5e-08  Score=87.75  Aligned_cols=87  Identities=25%  Similarity=0.571  Sum_probs=67.2

Q ss_pred             ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304        191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL  270 (537)
Q Consensus       191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~  270 (537)
                      +.-++..+|+|+|.+|||||||++.|.+.++....++.|++.......+ ..+..+|.++....+..+...+..      
T Consensus        10 ~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~------   82 (177)
T d1zj6a1          10 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTN------   82 (177)
T ss_dssp             HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTT------
T ss_pred             HhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecc-eEEEEeccccccccccchhhhhcc------
Confidence            4456778999999999999999999999988777788887777777776 999999999887776666665554      


Q ss_pred             CCCCccceeeEEee-cCccc
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQ  289 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~  289 (537)
                           .+.+++++| ++...
T Consensus        83 -----~~~~i~v~d~~d~~~   97 (177)
T d1zj6a1          83 -----TEFVIVVVDSTDRER   97 (177)
T ss_dssp             -----CCEEEEEEETTCTTT
T ss_pred             -----ceeeeeecccccccc
Confidence                 778888888 55443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.55  E-value=7.6e-08  Score=86.15  Aligned_cols=83  Identities=27%  Similarity=0.474  Sum_probs=58.0

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      ++.-+++|||++|||||||++.|++..+....|+.+.+...+.+++ ..+..++..+.......+......         
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------   80 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPA---------   80 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGG---------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecc-cccccccccchhhhhhHHhhhhcc---------
Confidence            4567899999999999999999999887667788888888888886 888899998876655444444443         


Q ss_pred             CccceeeEEee-cCcc
Q psy16304        274 DSRTCQVYLIM-CGVH  288 (537)
Q Consensus       274 ~~~~~il~v~D-s~~~  288 (537)
                        .+.+++++| ++..
T Consensus        81 --~~~~~~~~d~~d~~   94 (186)
T d1f6ba_          81 --INGIVFLVDCADHE   94 (186)
T ss_dssp             --CSEEEEEEETTCGG
T ss_pred             --cceeeeeeeccCcc
Confidence              677788888 5443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.53  E-value=1.3e-07  Score=84.77  Aligned_cols=110  Identities=29%  Similarity=0.513  Sum_probs=90.3

Q ss_pred             ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ...+..+.++|.+++||++++++|.++....+.++.++....+..++ ..+.++|++|.+.+...|+.+++..+++++|+
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   91 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFENTDILIYVI   91 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCC-eeEeEeeccccccchhHHHHHhhccceeEEee
Confidence            34567788999999999999999999998888788887777776566 89999999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |..|..++..+..++.       ..+.++...+|| |+.
T Consensus        92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~  130 (176)
T d1fzqa_          92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL  130 (176)
T ss_dssp             ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred             ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccc
Confidence            9999888876652221       145677777777 663

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=9.2e-08  Score=85.01  Aligned_cols=108  Identities=19%  Similarity=0.390  Sum_probs=72.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhH-HHHhhhhccccCCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPLG  271 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~l  271 (537)
                      .+|+|||+.|||||||++.+.+.++ ....++.|..  ...+.+.+ ...+.+||..|...... .++.++..       
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   75 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN-------   75 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT-------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecC-------
Confidence            3689999999999999999987665 4556666633  23444443 57788999988765543 34445555       


Q ss_pred             CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          ++++++++| ++.+.++.+..++..+...  ......++.++|
T Consensus        76 ----~d~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~pi~lvg  116 (165)
T d1z06a1          76 ----VHAVVFVYDMTNMASFHSLPAWIEECKQH--LLANDIPRILVG  116 (165)
T ss_dssp             ----CCEEEEEEETTCHHHHHTHHHHHHHHHHH--CCCSCCCEEEEE
T ss_pred             ----CCceEEEEEeehhhhhhhhhhhhHHHHhh--ccCCCCeEEEEe
Confidence                899999999 7777777766555433221  112345666666

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.4e-07  Score=87.30  Aligned_cols=78  Identities=21%  Similarity=0.351  Sum_probs=62.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC--cEEEEEeecCCCchhh-HHHHhhhhccccCCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g--~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l~~~  274 (537)
                      .|+|+|++|||||||++.|.+..+....|+.|.+...+.+..  ++.+.+||++|++.++ ..+..++..          
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------   71 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS----------   71 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG----------
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhh----------
Confidence            589999999999999999998877666788887777777642  5889999999998775 345555555          


Q ss_pred             ccceeeEEee-cC
Q psy16304        275 SRTCQVYLIM-CG  286 (537)
Q Consensus       275 ~~~~il~v~D-s~  286 (537)
                       ++.+++++| ++
T Consensus        72 -~~~~i~v~D~~d   83 (207)
T d2fh5b1          72 -ARAVVFVVDSAA   83 (207)
T ss_dssp             -EEEEEEEEETTT
T ss_pred             -ccccceEEEccc
Confidence             788889999 44

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.47  E-value=2.6e-07  Score=81.19  Aligned_cols=78  Identities=36%  Similarity=0.744  Sum_probs=62.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD  274 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~  274 (537)
                      +..+++|||++|||||||++.+++.++....|+.|........++ ..+..++.++....+..+......          
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------   72 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSN----------   72 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTT----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCc-eEEEEeeccccccccccchhhhhh----------
Confidence            456799999999999999999999988777889887777777775 899999999887666544444333          


Q ss_pred             ccceeeEEee
Q psy16304        275 SRTCQVYLIM  284 (537)
Q Consensus       275 ~~~~il~v~D  284 (537)
                       .+..++++|
T Consensus        73 -~~~~~~~~~   81 (169)
T d1upta_          73 -TDAVIYVVD   81 (169)
T ss_dssp             -CSEEEEEEE
T ss_pred             -hhhhhhhhh
Confidence             667777777

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.37  E-value=2.4e-07  Score=82.21  Aligned_cols=105  Identities=30%  Similarity=0.640  Sum_probs=86.6

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLS  390 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd  390 (537)
                      .++.++|.+++||+++++.|+++....+.+|.+.....+..++ ..+.+|||+|.+.++..|+.+++..+++++++|..|
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d   81 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD   81 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccc-cceeeeecCcchhhhhHHHhhhhhhhcceeeeeccc
Confidence            4678999999999999999999998888888887777676566 899999999999998899999999999999999999


Q ss_pred             cchhhhhhhhh---h----cCCcEEEEeccc-ch
Q psy16304        391 GRPDDRCQVYL---M----SCNCQVYLISAK-NL  416 (537)
Q Consensus       391 ~~~~~~~~i~l---l----~~G~ii~~g~nk-dl  416 (537)
                      ...+.....++   +    ..+.++...+|| |+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  115 (165)
T d1ksha_          82 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDL  115 (165)
T ss_dssp             GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             chhHHHHHHhhhhhhhhcccCCCceEEEEecccc
Confidence            88776655221   1    255677777777 66

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.33  E-value=4.8e-07  Score=80.40  Aligned_cols=105  Identities=26%  Similarity=0.527  Sum_probs=84.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ..+.++|.+++||++++++|.++. .....+|.++....+..++ ..+.+||++|.+.+...|..++...+++++|+|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeee-EEEEEeeccccccccccccccccccchhhcccccc
Confidence            457799999999999999999888 4556778887666666566 89999999999999999999999999999999999


Q ss_pred             Ccchhhhhhhhh---hc----CCcEEEEeccc-ch
Q psy16304        390 SGRPDDRCQVYL---MS----CNCQVYLISAK-NL  416 (537)
Q Consensus       390 d~~~~~~~~i~l---l~----~G~ii~~g~nk-dl  416 (537)
                      +...++....++   ++    .+.++...+|+ |+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl  116 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL  116 (164)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred             cccccchhhhhhhhhhhhhcccCCcEEEEEecccc
Confidence            988877665322   11    35667667776 66

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4e-07  Score=81.80  Aligned_cols=108  Identities=11%  Similarity=0.149  Sum_probs=65.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee--eeeEEEEECC-cEEEEEeecCCCchh-hHHHHhhhhccccCCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDF-RTIWKQYLGTVSQTPL  270 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~-r~~~~~~i~~v~Q~~~  270 (537)
                      .+|+|+|..|+|||||++.+.+..+  ....++.|  +....+.+++ ...+..||.++.... +.++..++.       
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~-------   76 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ-------   76 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC-------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccc-------
Confidence            4799999999999999999998654  23345666  3345666776 466788887654321 112222222       


Q ss_pred             CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304        271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG  317 (537)
Q Consensus       271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG  317 (537)
                          .++++++++| ++...+.++..+...+....  .....++.++|
T Consensus        77 ----~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~--~~~~~piilvg  118 (172)
T d2g3ya1          77 ----VGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVG  118 (172)
T ss_dssp             ----CCSEEEEEEETTCHHHHHHHHHHHHHHHTSG--GGTTSCEEEEE
T ss_pred             ----ccceeeeeecccccchhhhhhhhhhhhhhcc--ccCCceEEEEe
Confidence                3899999999 77766665555443332211  12345666665

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.7e-07  Score=80.34  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ++.++|.+++||+++++.|.+.......++.+.. ...+..++ ...+.+|||+|++....+++.+++.++++++|+|.+
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t   82 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT   82 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETT
T ss_pred             EEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecccc
Confidence            4779999999999999999988754444444422 22222233 478889999999999999999999999999999999


Q ss_pred             Ccchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        390 SGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       390 d~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      ++.+++.+..|..+       ...++...+|| |+.
T Consensus        83 ~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  118 (168)
T d2gjsa1          83 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  118 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG
T ss_pred             ccccccccccccchhhcccccccceEEEeecccchh
Confidence            99999887744321       23456666777 764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.31  E-value=1.1e-06  Score=78.92  Aligned_cols=84  Identities=15%  Similarity=0.284  Sum_probs=53.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP  273 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~  273 (537)
                      +|+|+|.+|||||||++.|+|.+.....+..|++.    ...... +..+.++|++|...........+......   ..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~---~~   82 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYE---AL   82 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHH---HT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee-eeeeeecccccccccccccchhccccccc---cc
Confidence            69999999999999999999986544444444332    233444 48999999999854322222211110000   01


Q ss_pred             CccceeeEEeec
Q psy16304        274 DSRTCQVYLIMC  285 (537)
Q Consensus       274 ~~~~~il~v~Ds  285 (537)
                      ..++.+++++|.
T Consensus        83 ~~ad~il~v~D~   94 (178)
T d1wf3a1          83 ADVNAVVWVVDL   94 (178)
T ss_dssp             SSCSEEEEEEET
T ss_pred             ccccceeeeech
Confidence            237888999993

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.26  E-value=1e-06  Score=78.88  Aligned_cols=108  Identities=28%  Similarity=0.537  Sum_probs=87.4

Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+..+.++|.+++||++++++|.++......+|.++......... ..+.+||++|....+..|+.+++..+++++|+|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D   88 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   88 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETT-EEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccc-eeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence            3456788999999999999999999997777777776666665455 899999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhh---c----CCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM---S----CNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl  416 (537)
                      ..+...+..+..++.   +    ...++...+|| |+
T Consensus        89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl  125 (173)
T d1e0sa_          89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDL  125 (173)
T ss_dssp             TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             cccchhHHHHHHHHHHHhhhcccccceeeeeeecccc
Confidence            999888877653221   1    35677777787 65

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=2.8e-07  Score=82.97  Aligned_cols=52  Identities=27%  Similarity=0.353  Sum_probs=38.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS  251 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~  251 (537)
                      .|+|+|++|||||||+|.|+|.+.. ..+..|+|++...+.. ..+.++|++|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~-~~~~ivDtpG~   53 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW-KNHKIIDMPGF   53 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE-TTEEEEECCCB
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeeccccccc-ccceecccCCc
Confidence            5899999999999999999997542 3456666665554442 34677999985

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.21  E-value=3.7e-07  Score=82.48  Aligned_cols=108  Identities=27%  Similarity=0.515  Sum_probs=83.9

Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+..+.++|.+++||++++++|.++......+|.+........++ ..+.+||++|.+.++..|+.+++..+++++|+|
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d   93 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD   93 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCC-EEEEEEecccccccchhHHhhhccceeEEEEee
Confidence            3456788999999999999999999998777788876666665565 899999999998888889989988999999999


Q ss_pred             CCCcchhhhhhhhhh---c----CCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM---S----CNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl  416 (537)
                      ..|...+.....++.   .    .+.++...+|| |+
T Consensus        94 ~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl  130 (182)
T d1moza_          94 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ  130 (182)
T ss_dssp             TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred             ecccccchhHHHHHHHHHHhhccCCcceEEEEEeecc
Confidence            999988776653322   1    35677788887 66

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.5e-06  Score=73.88  Aligned_cols=57  Identities=21%  Similarity=0.419  Sum_probs=42.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCch
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~  253 (537)
                      |.+|+|+|++|||||||++.|+|.+.+......|+++    ..+...+ ..+..+|++|..+
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~~~   61 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLRE   61 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC-ceeeecccccccc
Confidence            6789999999999999999999987644433344332    3445554 8899999998653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=78.86  Aligned_cols=107  Identities=17%  Similarity=0.240  Sum_probs=79.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ..++.++|.+++||++++++|.+|. .....+|++...  ..+..++ ...+.+|||+|......+++.+++.++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            3467899999999999999999987 445556666432  2332232 37899999999998888899999999999999


Q ss_pred             EeCCCcchhhhhhhhhh-----cCCcEEEEeccc-ch
Q psy16304        386 SHSLSGRPDDRCQVYLM-----SCNCQVYLISAK-NL  416 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll-----~~G~ii~~g~nk-dl  416 (537)
                      +|.+++.+++.+..|+.     ..+.++...+|+ |+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl  119 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI  119 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCC
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhh
Confidence            99999999988774442     245667777777 65

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.8e-06  Score=75.54  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=79.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|.+++||++++++|.++. .....+|++... .....++ ...+.+||++|.+.+...+..+++.++++++|+|
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d   82 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   82 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEee
Confidence            467899999999999999999887 444556665322 1222233 3577889999999888889999999999999999


Q ss_pred             CCCcchhhhhhhhhh---c-----CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM---S-----CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll---~-----~G~ii~~g~nk-dl~  417 (537)
                      .+++.+++.+..|..   +     .+.++...+|+ |+.
T Consensus        83 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~  121 (171)
T d2erxa1          83 ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES  121 (171)
T ss_dssp             TTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred             cccccchhcccchhhhhhhhhccCCCCcEEEEeeccccc
Confidence            999999888773331   1     34466677777 763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3e-06  Score=75.56  Aligned_cols=106  Identities=23%  Similarity=0.332  Sum_probs=76.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccc--cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~--la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|.+++||++++++|.++. .....++..  +....+..++ ...+.+|||+|.+.+..+|+.+++.++++++|+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~   85 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTY   85 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEee
Confidence            357799999999999999999876 222222222  2222333232 256889999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      |..+..+++....+..      ..+.++...+|+ |+
T Consensus        86 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          86 DITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL  122 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             ecccchhhhhhhhhhhhhcccccccccEEEEEeeccc
Confidence            9999888877662221      234566666676 65

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=2.3e-06  Score=76.30  Aligned_cols=107  Identities=24%  Similarity=0.377  Sum_probs=77.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|.+++||++++++|.+++ .....++.+...  ..+.... ...+.+|||+|.+.+..+|+.+++.++++|+|+
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~   85 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY   85 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            347799999999999999999887 444444444322  2222222 257889999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-----c-CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-----S-CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-----~-~G~ii~~g~nk-dl~  417 (537)
                      |..+..++.....+..     . ...++...+|+ |+.
T Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  123 (169)
T d3raba_          86 DITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME  123 (169)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG
T ss_pred             ECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc
Confidence            9999988877652221     1 33455666666 653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=1.1e-06  Score=77.08  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeee----eEEEEECCcEEEEEeecCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +|+|+|.+|||||||+|.|+|.+.....+..|.+    ...+...+ ..+..||++|..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dt~G~~   59 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVR   59 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC-eeEEeccccccc
Confidence            6899999999999999999997654444444422    23455565 899999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=2.7e-06  Score=76.45  Aligned_cols=54  Identities=22%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhCCCCccccCceeeee---EEEEECCcEEEEEeecCCCc
Q psy16304        199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR---ARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~---~~i~i~g~~~i~~~D~~G~~  252 (537)
                      |||+|.+|||||||+|.|+|..........+.+.   ......++..+.+||++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~   60 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII   60 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeee
Confidence            8999999999999999999975432222122121   23444445789999999964

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=4.9e-06  Score=73.92  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=80.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|..++||++++++|.+|. .....+|.+.  ....+..++ ...+.+|||+|.+....+++.+++..+++++|+
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVY   83 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEE
Confidence            457799999999999999999888 4445566653  222333232 368889999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |.+++.+++....|..      ....++...+++ |+.
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~  121 (170)
T d1ek0a_          84 DVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML  121 (170)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             eCCcccchhhhhhhhhhhccccccccceeeeecccccc
Confidence            9999999988774432      234556666666 653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.02  E-value=6.4e-06  Score=73.30  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ++.++|..++||++++++|.+|+ .....+|.+.. ...+..++ ...+.+||+.|.+....+++.+++.++++++|+|.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~   85 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI   85 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEET
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeec
Confidence            57799999999999999998877 44455666532 12222233 36788999999988888899999999999999999


Q ss_pred             CCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        389 LSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       389 hd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      ++..+++.+..|+-       ..+.++...+|+ |+.
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~  122 (168)
T d1u8za_          86 TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  122 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred             cchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc
Confidence            99999988774432       245667777777 763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=2.9e-06  Score=77.62  Aligned_cols=65  Identities=23%  Similarity=0.371  Sum_probs=43.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL  262 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i  262 (537)
                      ..+|+|+|++|||||||++.|+|.++....++.+ ....+..+ +..+.+||++|+...+..+..++
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~~-~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~   67 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYD-GSGVTLVDFPGHVKLRYKLSDYL   67 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSS-CEEETTGG-GSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEecc-eEEEEEeC-CeEEEEEecccccchhhHHHHHH
Confidence            3579999999999999999999875422111111 11122233 47789999999987765554443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2.6e-06  Score=75.39  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=80.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|.+++||++++++|.+|+ .....+|++....  ....++ ...+.+|||+|.+....++..+++.++++++|+
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   82 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVF   82 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEE
Confidence            357799999999999999999877 4455566663322  222122 367889999999888888899999999999999


Q ss_pred             eCCCcchhhhhhhhhh-----cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-----~~G~ii~~g~nk-dl~  417 (537)
                      |.++..+++.+..|+-     ..+.++...+|| |+.
T Consensus        83 d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~  119 (164)
T d1z2aa1          83 STTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL  119 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred             eccchhhhhhcccccccccccCCCceEEEeeccCCcc
Confidence            9999999988764442     245566666777 764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.01  E-value=4.6e-06  Score=80.05  Aligned_cols=57  Identities=28%  Similarity=0.433  Sum_probs=43.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~  252 (537)
                      ....|+|+|.+|||||||+|.|.|...+...+..|.|+    ....++| ..+.++||||..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g-~~i~viDTPGl~   91 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGLI   91 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-EEEEEEECCCSE
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc-EEEEEEeeeccc
Confidence            35679999999999999999999987654555555443    2344554 899999999975

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1e-05  Score=72.83  Aligned_cols=107  Identities=25%  Similarity=0.388  Sum_probs=77.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-----------ceEEEEEecCchhhHHHHHHHHH
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQYL  376 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-----------~p~lllLDT~Gl~~~~~l~~~~~  376 (537)
                      .++.++|.+++||++++++|.++. .....++.+..  ...+..++           ...+.+|||+|.+.+..+|+.++
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~   85 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF   85 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHH
Confidence            357799999999999999999887 33333333321  11111110           14678999999999999999999


Q ss_pred             hcCCEEEEEEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        377 GTVSQTLLVSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       377 ~~~~~vIlVvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      +.++++++|+|.++..+++.+..|..+       .+.++...+|+ |+.
T Consensus        86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~  134 (186)
T d2f7sa1          86 RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP  134 (186)
T ss_dssp             TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred             hcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch
Confidence            999999999999999998887755432       23456666666 764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=3.4e-06  Score=74.88  Aligned_cols=108  Identities=22%  Similarity=0.339  Sum_probs=79.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      +.++.++|.+++||++++++|..+. .....+|.+....  ....++ ...+.+|||+|.+....+++.+++..+++++|
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV   83 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEE
Confidence            4568899999999999999999877 3333344442221  121122 25677999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      +|.+++.+++.+..|..      ....++...+|+ |+.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  122 (167)
T d1z0ja1          84 YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT  122 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred             eeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhc
Confidence            99999999988774432      255677777777 763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.1e-06  Score=71.90  Aligned_cols=107  Identities=21%  Similarity=0.359  Sum_probs=77.3

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|.+++||++++++|.++. .....++...  .......++ ...+.+|||+|++....++..+++.++++++|+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   84 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   84 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEe
Confidence            357799999999999999999877 3223233332  222222233 358889999999999999999999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      |..+..++.....|+.      ....++...+|+ |+.
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  122 (166)
T d1z0fa1          85 DITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE  122 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             ccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence            9999988877663221      244566777777 653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.5e-06  Score=74.64  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=79.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..++.++|.+++||++++++|.++. .....++.. .....+..++ +..+.+|||+|.+.....+..+++..+++++|+
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   85 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVF   85 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeec
Confidence            3568899999999999999999887 444444433 2222333343 467889999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      |.++..+++.+..|.   .    ..+.++...+|+ |+.
T Consensus        86 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~  124 (173)
T d2fn4a1          86 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE  124 (173)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred             ccccccccchhhhhhHHHHHHhccCCCceEEEEEeechh
Confidence            999999998776432   2    134566666666 764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.6e-06  Score=74.73  Aligned_cols=107  Identities=17%  Similarity=0.312  Sum_probs=72.0

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.+|. .....+|.+...  ..+..++ ...+.+||++|.+....+|+.+++..+++++|+|
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   84 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD   84 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEe
Confidence            57799999999999999998877 444445555322  2222222 3788899999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~  418 (537)
                      .++..+++.+..|+.      ....++...+++ |+..
T Consensus        85 ~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~  122 (167)
T d1z08a1          85 ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK  122 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred             CCchhHHHhhhhhhhhcccccccccceeeecccccccc
Confidence            999999988763332      234455555666 7643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-06  Score=77.40  Aligned_cols=106  Identities=21%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|..++||++++++|.++. .....+|++... .....++ ...+.+||++|.+.+..+|+.+++.++++++|+|
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   82 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS   82 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcc
Confidence            457799999999999999999887 444455554221 1122122 3678999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      .++..+++.+..+..      ..+.++...+|| |+
T Consensus        83 ~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl  118 (177)
T d1kmqa_          83 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  118 (177)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGG
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccc
Confidence            999998876652222      134567677777 66

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9.6e-06  Score=71.73  Aligned_cols=108  Identities=20%  Similarity=0.269  Sum_probs=79.8

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      +.++.++|.+++||++++++|.++. .....++++- .......++ ...+.+||+.|.+.....+..+++.++++++|+
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   82 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY   82 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeee
Confidence            3568899999999999999999887 3344444441 122222232 367889999999888888999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      |.+++.+++.+..|..       ..+.++...+|| |+.
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  121 (167)
T d1kaoa_          83 SLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE  121 (167)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             eecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh
Confidence            9999999988774432       134567777777 764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6.1e-06  Score=73.39  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccccce--eccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al--l~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      ..++.++|.+++||++++.+|.+|. .....++.+.....  ..... ...+.+|||+|.+.+..+|+.+++..++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            3467899999999999999999887 44555555543322  21122 36788999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhh------hcCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQVYL------MSCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i~l------l~~G~ii~~g~nk-dl~  417 (537)
                      +|.++..+++....|.      ...+.++...+|+ |+.
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  124 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA  124 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccc
Confidence            9999999888766222      1245566677777 764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=1.4e-06  Score=78.63  Aligned_cols=55  Identities=20%  Similarity=0.184  Sum_probs=38.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      .|||+|++|||||||+|.|+|.......   .|...+.....+.++..+.+||++|+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~   60 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI   60 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence            4899999999999999999986532111   111112225556555789999998863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=1.5e-05  Score=70.77  Aligned_cols=54  Identities=24%  Similarity=0.351  Sum_probs=33.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +|+|+|++|||||||++.|+|...+......|+|+    ..+...+ ..+..+|++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~   59 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVF   59 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc-ccccccccccee
Confidence            68999999999999999999976544444445332    2444444 889999998853

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1e-05  Score=71.23  Aligned_cols=106  Identities=19%  Similarity=0.358  Sum_probs=79.2

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|..++||++++++|.+++ .....++.+....  ....++ +..+.+||++|++.....++.+++.++++++|+|
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d   81 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD   81 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeec
Confidence            47799999999999999999887 3333444443222  222222 3678899999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhhc------CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLMS------CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~  417 (537)
                      .++..+++.+..|+.+      .+.++...+|+ |+.
T Consensus        82 ~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~  118 (164)
T d1yzqa1          82 ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA  118 (164)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred             cccccchhhhHhhHHHHHHhcCCCceEEEEecccchh
Confidence            9999999887744432      45667777777 763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=1.3e-05  Score=71.88  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=40.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee----eEEEEECCcEEEEEeecCCCch
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSED  253 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~~  253 (537)
                      .+.+|||+|..|||||||++.|+|...+......+.+    ...+.+++ ..+..+|++|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~d~~g~~~   68 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLRR   68 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EEEEESSCSCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC-ceeeeeccCCccc
Confidence            5688999999999999999999987542222222211    12566665 8899999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1e-05  Score=72.09  Aligned_cols=106  Identities=24%  Similarity=0.357  Sum_probs=77.6

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.++. .....++.+....  .+..+. ...+.+|||+|.+.+..+|+.+++.++++++|+|
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD   86 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEe
Confidence            47799999999999999999876 3333333343222  121122 2578899999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      ..+..++..+..+..      ..+.++...+++ |+.
T Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  123 (174)
T d2bmea1          87 ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD  123 (174)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             cccchhHHHHhhhhcccccccCCceEEEEEEeccccc
Confidence            999988887663332      245677777777 653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.88  E-value=1.1e-05  Score=79.50  Aligned_cols=83  Identities=19%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEE-----------------C--CcEEEEEeecCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEY-----------------G--NKYEVFLYDLGGS  251 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i-----------------~--g~~~i~~~D~~G~  251 (537)
                      +|||||.++||||||+|.|+|.+       |++..|..|++......                 .  ....+.++|++|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl   81 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCc
Confidence            68999999999999999999853       45567777843321110                 0  0257899999997


Q ss_pred             chhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       252 ~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      ...... ...++.  +. ......++++++++|
T Consensus        82 i~ga~~-g~~~~~--~~-l~~i~~~d~ii~VVd  110 (319)
T d1wxqa1          82 VPGAHE-GRGLGN--KF-LDDLRMASALIHVVD  110 (319)
T ss_dssp             ----------------C-CCSSTTCSEEEEEEE
T ss_pred             ccchhc-ccchHH--HH-HHhhccceEEEEEec
Confidence            533210 111221  11 112345889999999

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=9.9e-06  Score=71.94  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=69.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCC--ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP--IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~--rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      .++.++|.+++||++++++|.+|+  .....++.+....  .+..++ ...+.+|||+|++....+|..+++..+++++|
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v   86 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL   86 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEE
Confidence            458899999999999999998887  2344444443322  232233 35778999999999999999999999999999


Q ss_pred             EeCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      +|..+..++..+..+..      ....++...+++ ++
T Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~  124 (170)
T d2g6ba1          87 YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS  124 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCST
T ss_pred             ecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeech
Confidence            99999998887763332      234455555555 54

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.7e-06  Score=72.12  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|.+++||++++++|.+|. .....++++.. ...+..++ ...+.+||++|.+.....++.+++..+++++|+|
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d   83 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS   83 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeee
Confidence            467899999999999999999888 44445555521 11222122 3678899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhhh-----c--CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM-----S--CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll-----~--~G~ii~~g~nk-dl~  417 (537)
                      .++..+++.+..|+.     .  .+.++...+++ |+.
T Consensus        84 ~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~  121 (167)
T d1c1ya_          84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             ccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc
Confidence            999999998874432     1  34456666666 663

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=8e-06  Score=72.71  Aligned_cols=107  Identities=20%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|..++||++++++|-++. .....+|.+-. ...+..++ ...+.+||++|.+....+++.+++.++++++|+|
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d   84 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYS   84 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecc
Confidence            457799999999999999998876 33444444411 11222233 3677899999998888888999999999999999


Q ss_pred             CCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~  417 (537)
                      .+|+.+++.+..|+.+       .+.++...+|+ |+.
T Consensus        85 ~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~  122 (169)
T d1x1ra1          85 VTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM  122 (169)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred             cccchhhhccchhhHHHHhhccccCccEEEEecccchh
Confidence            9999999887744321       35566666676 763

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=6.9e-06  Score=79.59  Aligned_cols=77  Identities=17%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC-------CCccccCceeeeeEEEEECCc----------------EEEEEeecCCCc
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE-------PIISLVPTVGFNRARVEYGNK----------------YEVFLYDLGGSE  252 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~-------~~~~~~Pt~G~t~~~i~i~g~----------------~~i~~~D~~G~~  252 (537)
                      +-++||||.++||||||++.|++.       +|++..|..|    .+.+.+.                ..+.+.|.+|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g----vv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi   77 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG----VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS----EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE----EEecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence            458999999999999999999964       3577789999    7776531                357889999975


Q ss_pred             hhhH----HHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        253 DFRT----IWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       253 ~~r~----~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      .-..    +..+++..        .+.++++++|+|
T Consensus        78 ~ga~~g~Glg~~FL~~--------ir~~d~LihVVr  105 (278)
T d1jala1          78 AGASKGEGLGNKFLAN--------IRETDAIGHVVR  105 (278)
T ss_dssp             TTHHHHGGGTCCHHHH--------HHTCSEEEEEEE
T ss_pred             CCcccCCCccHHHHHH--------HHhccceEEEee
Confidence            3221    11111111        123889999998

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=6.3e-06  Score=73.57  Aligned_cols=105  Identities=20%  Similarity=0.403  Sum_probs=54.2

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.++. .....++.+..  ...+..++ +..+.+|||+|.+.+..+|..+++..+++++|+|
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d   87 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD   87 (173)
T ss_dssp             EEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEE
Confidence            47799999999999999999877 34444444422  22333333 3677899999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhh---h---cCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYL---M---SCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~l---l---~~G~ii~~g~nk-dl  416 (537)
                      ..++.+++.+..+.   .   ..+.++...+++ |+
T Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~  123 (173)
T d2fu5c1          88 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV  123 (173)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred             CCChhhHHHHHHHHHHhhhhccCCceEEEEEecccc
Confidence            99998887765221   1   233455555555 55

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.2e-05  Score=71.45  Aligned_cols=107  Identities=20%  Similarity=0.259  Sum_probs=74.5

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|.+++||++++++|.+|. .....+|.+ .....+..++ ...+.+||++|.+.....+..+++.++++++|+|
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d   85 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFS   85 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeec
Confidence            468899999999999999998877 444445544 2222222233 3678899999998888888889999999999999


Q ss_pred             CCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~  417 (537)
                      .++..+++.+..|..       ....++...+|+ |+.
T Consensus        86 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~  123 (171)
T d2erya1          86 VTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD  123 (171)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCT
T ss_pred             cccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchh
Confidence            999999988774432       134455566666 663

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.85  E-value=1.7e-05  Score=71.30  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCCcccc------Cceeeee----EEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPIISLV------PTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS  266 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~------Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~  266 (537)
                      -.|+|+|.++||||||++.|++.......      ...|++.    ..+.++ +..+..+|++|+.++..........  
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~l~~--   82 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE-NYRITLVDAPGHADLIRAVVSAADI--   82 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET-TEEEEECCCSSHHHHHHHHHHHTTS--
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccC-Cccccccccccccccccchhhhhhh--
Confidence            46999999999999999999985321111      1223221    223334 4888999999987766544444443  


Q ss_pred             cCCCCCCCccceeeEEeec
Q psy16304        267 QTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       267 Q~~~l~~~~~~~il~v~Ds  285 (537)
                               .+.+++++|+
T Consensus        83 ---------~d~~ilv~d~   92 (179)
T d1wb1a4          83 ---------IDLALIVVDA   92 (179)
T ss_dssp             ---------CCEEEEEEET
T ss_pred             ---------cccccccccc
Confidence                     7788888883

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.5e-05  Score=70.82  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=78.3

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV  385 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV  385 (537)
                      +.++.++|.+++||++++++|.++. .....||++..  ..... ++ ...+.+|||+|.+... .+..+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccc-cccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4578899999999999999999887 55666776633  22222 32 3678899999996553 456788889999999


Q ss_pred             EeCCCcchhhhhhh--hhh-----cCCcEEEEeccc-chh
Q psy16304        386 SHSLSGRPDDRCQV--YLM-----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       386 vdshd~~~~~~~~i--~ll-----~~G~ii~~g~nk-dl~  417 (537)
                      +|..++.+++.+..  +..     ..+.++...+|+ |+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  119 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  119 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence            99999999887762  221     245677778887 764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.5e-06  Score=75.91  Aligned_cols=107  Identities=20%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|..++||++++.+|.+|. .....+|++... .....++ ...+.+|||+|.+.+..++..+++.++++++|+|
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   83 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   83 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccc
Confidence            467899999999999999999888 444445555222 1222132 3678899999999998899999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      .+++++++.+..+..      ..+.++...+++ |+.
T Consensus        84 ~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~  120 (191)
T d2ngra_          84 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR  120 (191)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGG
T ss_pred             cchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            999999988763222      145566666666 763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.4e-05  Score=71.45  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=76.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|..++||++++++|.+++ .....++...  ....+..++ ...+.+|||+|.+....+|+.+++..+++++|+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~   87 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVY   87 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            457899999999999999999887 2222222222  222233232 357889999999888889999999999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEecccc
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAKN  415 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nkd  415 (537)
                      |..++.+++....++.       ....++...+++.
T Consensus        88 d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~  123 (177)
T d1x3sa1          88 DVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI  123 (177)
T ss_dssp             ETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred             ECCCccccccchhhhhhhcccccccceeeEEEeecc
Confidence            9999988887763332       2345666677773

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=8.6e-06  Score=72.00  Aligned_cols=87  Identities=26%  Similarity=0.412  Sum_probs=64.7

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.+|. .....+|.+...  ..+..++ ...+.+|||+|++.+..+|..+++..+++++|+|
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   83 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD   83 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            46799999999999999998887 444455555322  2232232 3677799999999888889999999999999999


Q ss_pred             CCCcchhhhhh
Q psy16304        388 SLSGRPDDRCQ  398 (537)
Q Consensus       388 shd~~~~~~~~  398 (537)
                      ..+..+++.+.
T Consensus        84 ~~~~~s~~~~~   94 (166)
T d1g16a_          84 ITDERTFTNIK   94 (166)
T ss_dssp             TTCHHHHHTHH
T ss_pred             CCCccCHHHHH
Confidence            99999888766

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.7e-06  Score=73.26  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|.+++||++++++|.++. .....+|.+.. ...+..++ ...+.+|||+|.+....++..+++.++++++|+|
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d   84 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS   84 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcc
Confidence            467899999999999999998877 44455666533 22333343 4677899999998777777888889999999999


Q ss_pred             CCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++.+..|+   .    ..+.++...+|+ |+.
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  122 (167)
T d1xtqa1          85 VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH  122 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG
T ss_pred             cchhhhhhhhhhhhhhhhhcccccccceeeeccccccc
Confidence            99999998876332   1    234567777777 763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=6.3e-06  Score=75.14  Aligned_cols=107  Identities=21%  Similarity=0.380  Sum_probs=78.6

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|..++||++++++|.++. .....++.+....  .+..++ +..+.+|||+|.+.+..+|..+++.++++++|+
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~   86 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY   86 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence            347799999999999999998776 4555556554332  222222 368889999999988888999999999999999


Q ss_pred             eCCCcchhhhhhhh---h---hcCCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVY---L---MSCNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~---l---l~~G~ii~~g~nk-dl~  417 (537)
                      |..+..++.....+   +   ...+.++...+++ |+.
T Consensus        87 d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~  124 (194)
T d2bcgy1          87 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK  124 (194)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             eCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccc
Confidence            99998888776622   1   1245566666666 653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=6.4e-06  Score=74.22  Aligned_cols=106  Identities=21%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|..++||++++.+|..|. .....+|++ ........++ ...+.+||++|.+.....++.+++.++++++|+|
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   82 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFD   82 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeee
Confidence            467899999999999999998887 334445544 2222222232 4788899999998888888888999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      .++..+++.+..++.      ..+.++...+|+ |+
T Consensus        83 ~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl  118 (179)
T d1m7ba_          83 ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL  118 (179)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred             cccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence            999999887663222      245677777777 65

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5e-06  Score=75.26  Aligned_cols=107  Identities=21%  Similarity=0.266  Sum_probs=77.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|..++||++++++|..+. .....+|++-. ...+..++ ...+.+|||+|++.+..++..+++.++++++|+|
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d   89 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   89 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccc
Confidence            457799999999999999999887 44444555422 22222222 3678899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~  417 (537)
                      ..+..+++....+..      ..+.++...+|| |+.
T Consensus        90 ~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~  126 (185)
T d2atxa1          90 VVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR  126 (185)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccc
Confidence            999998876552221      234456666666 763

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=4.8e-06  Score=80.61  Aligned_cols=58  Identities=26%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      .+.++++||.+++|||||+|.|.|...+...+..|+|+....+.-+.++.++|++|.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~  168 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL  168 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCcc
Confidence            5678999999999999999999998888888999988755443223458889999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.73  E-value=2.1e-05  Score=76.80  Aligned_cols=79  Identities=14%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCCC--------CccccCceeeeeEEEEECC----------------cEEEEEeecC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGEP--------IISLVPTVGFNRARVEYGN----------------KYEVFLYDLG  249 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~--------~~~~~Pt~G~t~~~i~i~g----------------~~~i~~~D~~  249 (537)
                      ..+-++||||.++||||||++.|++..        |++..|..|    .+.+.+                ...+.+.|.+
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g----~v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dva   83 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA----KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA   83 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE----EEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeE----EEeccccchhhhhhcccCCceecccceeeecc
Confidence            357889999999999999999999642        455678888    666553                1467888998


Q ss_pred             CCchhh----HHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        250 GSEDFR----TIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       250 G~~~~r----~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      |...-.    .+-.+++..        .+.++++++|+|
T Consensus        84 GLv~gA~~g~GLGn~fL~~--------ir~~d~lihVV~  114 (296)
T d1ni3a1          84 GLTKGASTGVGLGNAFLSH--------VRAVDAIYQVVR  114 (296)
T ss_dssp             GGCCCCCSSSSSCHHHHHH--------HTTCSEEEEEEE
T ss_pred             ccccccccccccHHHHHHH--------hhccceeEEEEe
Confidence            754211    011111111        123889999998

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=3.6e-05  Score=67.58  Aligned_cols=107  Identities=21%  Similarity=0.328  Sum_probs=74.8

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHH-HHHHHHhcCCEEEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLLVS  386 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIlVv  386 (537)
                      ++.++|.+++||++++++|.++. .....++.+...  ....... +..+.+||+.|...... .|+.+++..+++++|+
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~   83 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVY   83 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEE
Confidence            47799999999999999999887 333333333222  1111111 36788999888755544 5788899999999999


Q ss_pred             eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chhh
Q psy16304        387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~~  418 (537)
                      |.+++.+++.+..|+.       ..+.++...+|| |+..
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          84 DMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  123 (165)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             EeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh
Confidence            9999999988763332       135567777777 7743

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.6e-06  Score=73.34  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=79.9

Q ss_pred             CccEEEeccCccCccchhhhhcCCC-ceeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ..++.++|.+++||++++++|.+++ .....+|++- ....+..++ ...+.+||++|.+.+..+++.+++..+++++|+
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICF   84 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeee
Confidence            4568899999999999999999887 4444455552 222222233 367789999999988888899999999999999


Q ss_pred             eCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      |.++..+++.+..+..      ..+.++...+|| |+
T Consensus        85 d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl  121 (183)
T d1mh1a_          85 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL  121 (183)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccc
Confidence            9999999887763222      145567777777 76

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.4e-05  Score=69.74  Aligned_cols=107  Identities=20%  Similarity=0.352  Sum_probs=77.4

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.+|. .....++.+.  ....+..++ ...+.+||++|.+.+...|..+++..+++++|+|
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d   85 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD   85 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEE
Confidence            47799999999999999999887 3333333332  222233343 3578899999999888889999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN  418 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~  418 (537)
                      ..+..++.....++.      ..+.++...+|| |+..
T Consensus        86 ~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~  123 (175)
T d2f9la1          86 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH  123 (175)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             CCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc
Confidence            999988887663321      245677777788 7643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=70.02  Aligned_cols=105  Identities=23%  Similarity=0.343  Sum_probs=75.0

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.++. .....++....  ........ +..+.+||++|.+....+|+.+++.++++++|+|
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d   84 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   84 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEe
Confidence            47799999999999999998886 22222222211  11111121 3688899999999888899999999999999999


Q ss_pred             CCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM------SCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll------~~G~ii~~g~nk-dl  416 (537)
                      ..+..+++.+..|+.      ..+.++...+|+ |+
T Consensus        85 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~  120 (173)
T d2a5ja1          85 ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL  120 (173)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             ecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch
Confidence            999999988774331      245677777777 65

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.62  E-value=7.1e-05  Score=64.48  Aligned_cols=104  Identities=30%  Similarity=0.592  Sum_probs=75.4

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSG  391 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~  391 (537)
                      ++.++|.+++||++++++|.+++.....++............ ..+.++|++|.......+..+.+..+++++++|..+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSS-CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeee-EEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            467999999999999999998884433232233333333233 7899999999988888899999999999999999998


Q ss_pred             chhhhhhhhhhc-------CCcEEEEeccc-ch
Q psy16304        392 RPDDRCQVYLMS-------CNCQVYLISAK-NL  416 (537)
Q Consensus       392 ~~~~~~~i~ll~-------~G~ii~~g~nk-dl  416 (537)
                      ..+.....+..+       ...++...+++ ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~  113 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDL  113 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccc
Confidence            877766533221       34556666665 44

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.5e-05  Score=66.14  Aligned_cols=106  Identities=20%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      .++.++|.+++||++++++|.++. .....++.+..  ......+.+..+.+||+.|.+.....++.+++.++++++|+|
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d   83 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   83 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeec
Confidence            467899999999999999999887 33344444422  222221214678899999998888889999999999999999


Q ss_pred             CCCcchhhhhhhhhhc-------CCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLMS-------CNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl  416 (537)
                      .+++.+++.+..|+..       .+.++...+++ |+
T Consensus        84 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (166)
T d1ctqa_          84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL  120 (166)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC
T ss_pred             ccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc
Confidence            9999999887744431       34567777777 65

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.9e-05  Score=68.84  Aligned_cols=106  Identities=15%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccccce--eccCC--ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al--l~~~e--~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      ++.++|.+++||++++++|.+++ .....++.+.....  ....+  ...+.+|||+|.+.....+..+.+.++++++++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVY   83 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEe
Confidence            46799999999999999998877 33344444422211  11011  256789999999988888999999999999999


Q ss_pred             eCCCcchhhhhhhhhhc----------CCcEEEEeccc-chh
Q psy16304        387 HSLSGRPDDRCQVYLMS----------CNCQVYLISAK-NLS  417 (537)
Q Consensus       387 dshd~~~~~~~~i~ll~----------~G~ii~~g~nk-dl~  417 (537)
                      |.++..+++.+..|.-+          .+.++...+|| |+.
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~  125 (175)
T d1ky3a_          84 DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  125 (175)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             ecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence            99999988776644321          24567777777 663

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00013  Score=64.56  Aligned_cols=55  Identities=22%  Similarity=0.347  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCCccccCceeee---eEEEEECCcEEEEEeecCCCc
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN---RARVEYGNKYEVFLYDLGGSE  252 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t---~~~i~i~g~~~i~~~D~~G~~  252 (537)
                      +|+|+|.+|+|||||+|.|+|.+.+......+++   ...+...+...+..+|.++..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~   64 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   64 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCce
Confidence            4899999999999999999997543222111111   112333334666777877764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=1.7e-05  Score=71.87  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN  231 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t  231 (537)
                      .+|+|+|++|||||||+|.|+|.+. +...+..++|
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t   59 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT   59 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeeccccee
Confidence            3699999999999999999999643 3344444433

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=0.00014  Score=66.90  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC---C-----C---cccc--C---ceeeee----EEEEECCcEEEEEeecCCCchhhH
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE---P-----I---ISLV--P---TVGFNR----ARVEYGNKYEVFLYDLGGSEDFRT  256 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~---~-----~---~~~~--P---t~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~  256 (537)
                      ..|+++|..++|||||++.|.+.   .     +   ....  |   .-|+|.    -.+.+++ ..+.++|+||+.++..
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~-~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSGGGHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC-eEEEEEeCCCchhhHH
Confidence            45899999999999999999621   0     0   0000  0   013332    2344554 8999999999998875


Q ss_pred             HHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        257 IWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       257 ~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      .....+..           ++..++++|+.
T Consensus        83 ~~~~~~~~-----------aD~avlVvda~  101 (204)
T d2c78a3          83 NMITGAAQ-----------MDGAILVVSAA  101 (204)
T ss_dssp             HHHHHHTT-----------CSSEEEEEETT
T ss_pred             HHHHHHHH-----------CCEEEEEEECC
Confidence            55444444           78888898843

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=9.3e-05  Score=65.69  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCCce--eeeccccc--ccceeccCC-ceEEEEEe---cCchhhHHHHHHHHHhcCCEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGF--NRARVEYGN-KYEVFLYD---LGGSEDFRTIWKQYLGTVSQT  382 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rq--rvs~ti~l--a~all~~~e-~p~lllLD---T~Gl~~~~~l~~~~~~~~~~v  382 (537)
                      .++.++|.+++||+++++.|+++...  ...++.+.  ....+..++ ...+.+||   |+|++.+  ++..+++.++++
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~   81 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAY   81 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccccee
Confidence            45789999999999999999988732  22233332  222232233 36778899   4555543  467778889999


Q ss_pred             EEEEeCCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304        383 LLVSHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS  417 (537)
Q Consensus       383 IlVvdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~  417 (537)
                      ++|+|..+..+++.+..|.   ..    ...++...+|| |+.
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  124 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV  124 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc
Confidence            9999999999988776432   21    34566677777 764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=1.1e-05  Score=72.53  Aligned_cols=82  Identities=20%  Similarity=0.310  Sum_probs=67.2

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      +.++.++|..++||++++++|..+...    +.++....+..+. ..+.+|||+|++.++.+|..|++..++++++++..
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~~~~~~~~~~-~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA----GTGIVETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC----CCSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC----CccEEEEEEEeee-eeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            356889999999999999999766543    3365555555555 89999999999999999999999999999999988


Q ss_pred             Ccchhhh
Q psy16304        390 SGRPDDR  396 (537)
Q Consensus       390 d~~~~~~  396 (537)
                      +...+..
T Consensus        77 ~~~~~~~   83 (195)
T d1svsa1          77 DYDLVLA   83 (195)
T ss_dssp             GGGCBCS
T ss_pred             ccchHHH
Confidence            8876643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=4.9e-05  Score=77.38  Aligned_cols=58  Identities=26%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCCCCc--c--ccCceeeeeEEEE--ECCcEEEEEeecCCCch
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGEPII--S--LVPTVGFNRARVE--YGNKYEVFLYDLGGSED  253 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~~~~--~--~~Pt~G~t~~~i~--i~g~~~i~~~D~~G~~~  253 (537)
                      ...|+|+|.+|||||||+|.|.|....  .  .....++|++...  ..++..+.+||++|...
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~  119 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS  119 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccc
Confidence            467999999999999999999995431  1  1122234443333  33334578999999753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.42  E-value=0.00021  Score=62.81  Aligned_cols=108  Identities=22%  Similarity=0.462  Sum_probs=79.2

Q ss_pred             cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ..+..+.++|.+++||++++++|++++.....++.+.........+ .++.++|+.+.+.....|..+....+.++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d   91 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD   91 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecc-eEEEEeccccccccccchhhhhccceeeeeecc
Confidence            3456788999999999999999999997777666665555444444 899999999998888888889999999999999


Q ss_pred             CCCcchhhhhh--hhh-----hcCCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQ--VYL-----MSCNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~--i~l-----l~~G~ii~~g~nk-dl  416 (537)
                      .++........  ...     ...+.++...+++ |+
T Consensus        92 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  128 (177)
T d1zj6a1          92 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  128 (177)
T ss_dssp             TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             cccccchhhhhhhhhhhhhcccccceEEEEEEEcccc
Confidence            98888776544  111     1256667777777 65

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00019  Score=65.27  Aligned_cols=107  Identities=18%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCC--ceEEEEEecCchhhHH-HHHHHHHhcCCEEEEEEeC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e--~p~lllLDT~Gl~~~~-~l~~~~~~~~~~vIlVvds  388 (537)
                      .+.++|.+++||+++++.|.+++.....++.......+...+  ...+.++|+.|.+..+ ..|..+++..+++++|+|.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            367899999999999999999986656666665544443221  3678999999997664 5778888888999999999


Q ss_pred             CCcchh-hhhh----hhh-----hcCCcEEEEeccc-chhh
Q psy16304        389 LSGRPD-DRCQ----VYL-----MSCNCQVYLISAK-NLSN  418 (537)
Q Consensus       389 hd~~~~-~~~~----i~l-----l~~G~ii~~g~nk-dl~~  418 (537)
                      .+.... ....    .++     ...+.++....|| |+..
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            886543 2221    111     2245677788888 7743

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.34  E-value=5.6e-05  Score=70.69  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|+|+|..+||||||++.|++.
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhh
Confidence            356999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=7.9e-05  Score=69.71  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC---ccccC--cee--eee--EEEEECCcEEEEEeecCCCchh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI---ISLVP--TVG--FNR--ARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~---~~~~P--t~G--~t~--~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                      +|.+.+++|++|+|||||+|.|.+...   ..+..  ..|  +|+  +-+.++++  -.++|+||...+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g--g~iiDTPG~r~~  160 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG--GYVVDTPGFANL  160 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS--CEEESSCSSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC--cEEEeCCccccc
Confidence            588999999999999999999988532   11121  223  222  33444322  257899998644

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=3.9e-05  Score=71.43  Aligned_cols=79  Identities=28%  Similarity=0.453  Sum_probs=67.4

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      ..+++++|+.++||++++.+|..++   ..||+|+....+..++ ..+.+||++|++..+..|..+++...+++++++..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~-~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s   81 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS   81 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETT-EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECc-EEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence            4568899999999999999997664   4578887766666676 89999999999999999999999999999999877


Q ss_pred             Ccc
Q psy16304        390 SGR  392 (537)
Q Consensus       390 d~~  392 (537)
                      +..
T Consensus        82 ~~~   84 (221)
T d1azta2          82 SYN   84 (221)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0002  Score=63.92  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=62.6

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      +..+.++|..++||+++++++.++......++.+. ....+..++ ...+.+|||+|....     .|++.++++++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd   79 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFS   79 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEee
Confidence            45688999999999999999998885544444431 122222233 367889999998643     36788899999999


Q ss_pred             CCCcchhhhhh
Q psy16304        388 SLSGRPDDRCQ  398 (537)
Q Consensus       388 shd~~~~~~~~  398 (537)
                      ..+..+++.+.
T Consensus        80 ~~~~~Sf~~~~   90 (175)
T d2bmja1          80 LEDENSFQAVS   90 (175)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cccchhhhhhH
Confidence            99999888776

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=4.4e-05  Score=67.65  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      ...+|+|+|++|||||||+|.|++.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~   41 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKS   41 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            567899999999999999999999754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.26  E-value=5.4e-05  Score=71.10  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCCCC---ccccCc--ee--eee--EEEEECCcEEEEEeecCCCchh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGEPI---ISLVPT--VG--FNR--ARVEYGNKYEVFLYDLGGSEDF  254 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~---~~~~Pt--~G--~t~--~~i~i~g~~~i~~~D~~G~~~~  254 (537)
                      +|.+.+|+|++|+|||||+|.|.+...   ..++..  .|  +|+  +-+..+|+   .++|+||...+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg---~iiDTPG~r~~  161 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG---LVADTPGFSSL  161 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE---EEESSCSCSSC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC---EEEECCccccc
Confidence            578899999999999999999998632   112211  23  222  22344542   36799998644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.14  E-value=0.00074  Score=64.62  Aligned_cols=77  Identities=21%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHh---CCCC-----------cccc-------CceeeeeEEEEECCcEEEEEeecCCCchhhH
Q psy16304        198 PILVLGLDNAGKSSIIKRIL---GEPI-----------ISLV-------PTVGFNRARVEYGNKYEVFLYDLGGSEDFRT  256 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~---G~~~-----------~~~~-------Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~  256 (537)
                      .|+|+|.-|+|||||+..|.   |..-           ..+.       .|.......+.+.+ ..+.++|+||+.++..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc-cceeEEccCchhhhhh
Confidence            38999999999999999984   3210           0000       01112223566776 9999999999998877


Q ss_pred             HHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        257 IWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       257 ~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ....-+..           +++.++|+|+.
T Consensus        83 e~~~al~~-----------~D~avlvvda~  101 (267)
T d2dy1a2          83 EIRGALEA-----------ADAALVAVSAE  101 (267)
T ss_dssp             HHHHHHHH-----------CSEEEEEEETT
T ss_pred             hhhhhhcc-----------cCceEEEeecc
Confidence            66666666           89999999933

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=5.2e-05  Score=68.08  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL  389 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh  389 (537)
                      +.++.++|..++||++++.+|..|... ..||+|+....+.... ..+.+||++|++..+..|..+++...+++++++..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQS-VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSS-CEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccc-eeeeeccccccccccccccccccccceeeEeeecc
Confidence            356889999999999999999888865 4588887766665555 88999999999999999999999999999999887


Q ss_pred             Ccch
Q psy16304        390 SGRP  393 (537)
Q Consensus       390 d~~~  393 (537)
                      +...
T Consensus        80 ~~~~   83 (200)
T d2bcjq2          80 EYDQ   83 (200)
T ss_dssp             GGGC
T ss_pred             chhh
Confidence            7654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00014  Score=65.47  Aligned_cols=104  Identities=26%  Similarity=0.330  Sum_probs=71.7

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLS  390 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd  390 (537)
                      .++.++|.+++||++++++|.-  .....||+|+....+..+. ..+.+||++|++..+..|..+++...+++++++..+
T Consensus         3 iKivllG~~~vGKTsll~r~~f--~~~~~pTiG~~~~~~~~~~-~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~   79 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDFEIKN-VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE   79 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH--HHSCCCCSSEEEEEEEETT-EEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc--CCCCCCeeeeEEEEEeeee-eeeeeecccceeeecccccccccccceeEEEEEcCC
Confidence            4678999999999999999932  2334568887766666566 899999999999999999999999999999998887


Q ss_pred             cchhhhhh----------hh---hh----cCCcEEEEeccc-chh
Q psy16304        391 GRPDDRCQ----------VY---LM----SCNCQVYLISAK-NLS  417 (537)
Q Consensus       391 ~~~~~~~~----------i~---ll----~~G~ii~~g~nk-dl~  417 (537)
                      ...+....          .+   ++    ..+.++...+|| |+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          80 FDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             cceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            65442211          11   11    256788888888 663

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00019  Score=61.51  Aligned_cols=86  Identities=28%  Similarity=0.522  Sum_probs=71.1

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSG  391 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~  391 (537)
                      ++.++|.+++||+++++.|.++....+.++.+........++ ....++|+.+.......++.+....++.+++++..+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   80 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP   80 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTT-CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCC-eeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence            467999999999999999999997777777777666665555 7889999988877777788888888999999988887


Q ss_pred             chhhhhh
Q psy16304        392 RPDDRCQ  398 (537)
Q Consensus       392 ~~~~~~~  398 (537)
                      .......
T Consensus        81 ~~~~~~~   87 (166)
T d2qtvb1          81 ERFDEAR   87 (166)
T ss_dssp             GGHHHHH
T ss_pred             hhhhhhh
Confidence            7765544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.05  E-value=0.00062  Score=61.50  Aligned_cols=77  Identities=22%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee------eeeEEEEE--------------------CCcEEEEEeec
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG------FNRARVEY--------------------GNKYEVFLYDL  248 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G------~t~~~i~i--------------------~g~~~i~~~D~  248 (537)
                      ..||++|.-++|||||++.|+|...  .......|      +......-                    .+...+.++|+
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt   85 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   85 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence            3589999999999999999998421  11111112      11111100                    01256889999


Q ss_pred             CCCchhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304        249 GGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM  284 (537)
Q Consensus       249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D  284 (537)
                      +|+.++.....+....           ++..++++|
T Consensus        86 PGh~~f~~~~~~~~~~-----------~d~~ilvvd  110 (195)
T d1kk1a3          86 PGHEALMTTMLAGASL-----------MDGAILVIA  110 (195)
T ss_dssp             SSHHHHHHHHHHCGGG-----------CSEEEEEEE
T ss_pred             chhhhhhHHhhccccc-----------ccccccccc
Confidence            9998776544444444           677777777

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00039  Score=61.41  Aligned_cols=106  Identities=18%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS  386 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv  386 (537)
                      .++.++|.+++||++++++|..+. .....+|.+..  ......++ ...+.+||+.|.......+..++...+++++++
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~   86 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF   86 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEE
Confidence            357799999999999999998876 33344444422  22222233 356779999999888888888889999999999


Q ss_pred             eCCCcchhhhhhhhh---h-------cCCcEEEEeccc-ch
Q psy16304        387 HSLSGRPDDRCQVYL---M-------SCNCQVYLISAK-NL  416 (537)
Q Consensus       387 dshd~~~~~~~~i~l---l-------~~G~ii~~g~nk-dl  416 (537)
                      |..+..+++.+..|+   .       ..+.++...+|| |+
T Consensus        87 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl  127 (174)
T d1wmsa_          87 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI  127 (174)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred             eeecccccchhhhHHHHHHHHhccccCCCceEEEeccccch
Confidence            999998887766333   1       134556666676 76

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.04  E-value=0.00032  Score=64.04  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC-------CCc--------cccCceeeeeEE--EEE-CCcEEEEEeecCCCchhhHH
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE-------PII--------SLVPTVGFNRAR--VEY-GNKYEVFLYDLGGSEDFRTI  257 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~-------~~~--------~~~Pt~G~t~~~--i~i-~g~~~i~~~D~~G~~~~r~~  257 (537)
                      ...||++|.-++|||||++.|.+.       .+.        ......|+|.+.  +.+ ..+..+.++|++|+.++-..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            346899999999999999998741       000        011223444332  222 22488999999999876543


Q ss_pred             HHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       258 ~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      .......           ++..++++|+.
T Consensus        83 ~~~~~~~-----------aD~allVVda~  100 (196)
T d1d2ea3          83 MITGTAP-----------LDGCILVVAAN  100 (196)
T ss_dssp             HHHTSSC-----------CSEEEEEEETT
T ss_pred             HHHHHhh-----------cCeEEEEEEcC
Confidence            3333333           78888898843

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=9.6e-05  Score=66.15  Aligned_cols=105  Identities=16%  Similarity=0.244  Sum_probs=76.0

Q ss_pred             cEEEeccCccCccchhhhhcCCC-ceeeecccccccce--eccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al--l~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd  387 (537)
                      ++.++|.+++||++++++|.+|. .....+|.+.....  ....+ +..+.++||+|.......+..++..++++++++|
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   83 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFD   83 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeec
Confidence            46799999999999999999888 44455565543322  11121 3678899999998777778888889999999999


Q ss_pred             CCCcchhhhhhhhhh---c-------CCcEEEEeccc-ch
Q psy16304        388 SLSGRPDDRCQVYLM---S-------CNCQVYLISAK-NL  416 (537)
Q Consensus       388 shd~~~~~~~~i~ll---~-------~G~ii~~g~nk-dl  416 (537)
                      ..+..+++.+..|+-   +       .+.++...+|| |+
T Consensus        84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl  123 (184)
T d1vg8a_          84 VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL  123 (184)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred             ccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecc
Confidence            999888877664331   1       23356666777 76

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.0014  Score=57.83  Aligned_cols=104  Identities=17%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchh--------hHHHHHHHHHhcC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE--------DFRTIWKQYLGTV  379 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~--------~~~~l~~~~~~~~  379 (537)
                      .+.++|.+++||+++++.|.|.....++...+.+..    .....+ ..+.++||+|+.        ........+++.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-RQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee-eeeeecccccccccccccchhcccccccccccc
Confidence            467999999999999999999876555444443322    222344 789999999981        1122223445678


Q ss_pred             CEEEEEEeCCCcchhhhhh--hhhh--cCCcEEEEeccc-ch
Q psy16304        380 SQTLLVSHSLSGRPDDRCQ--VYLM--SCNCQVYLISAK-NL  416 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~--i~ll--~~G~ii~~g~nk-dl  416 (537)
                      +++++|+|..+........  .++.  ..+.++....|| |+
T Consensus        86 d~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl  127 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA  127 (178)
T ss_dssp             SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred             cceeeeechhhhhcccccchhhheeccccchhhhhhhccccc
Confidence            9999999887654433222  2221  234566667777 65

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.77  E-value=0.00069  Score=59.25  Aligned_cols=107  Identities=21%  Similarity=0.397  Sum_probs=71.5

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS  388 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds  388 (537)
                      ...++.++|.+++||++++++|+++......++.......+..++ ..+..+|+.+.......+..+....+..+++++.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   90 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC   90 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecc-cccccccccchhhhhhHHhhhhcccceeeeeeec
Confidence            345688999999999999999999997666666666655555565 7888889888877777788888888999999988


Q ss_pred             CCcchhhhhhhhh-------hcCCcEEEEeccc-ch
Q psy16304        389 LSGRPDDRCQVYL-------MSCNCQVYLISAK-NL  416 (537)
Q Consensus       389 hd~~~~~~~~i~l-------l~~G~ii~~g~nk-dl  416 (537)
                      .+...........       ...+.++....++ |+
T Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~  126 (186)
T d1f6ba_          91 ADHERLLESKEELDSLMTDETIANVPILILGNKIDR  126 (186)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred             cCccchHHHHHHHHHhhcccccCCCceEEEEeccCc
Confidence            8877666544111       1234555555555 54

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.0015  Score=62.58  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHh---CCCC-----------ccccC---cee----eeeEEEEECCcEEEEEeecCCCchhhH
Q psy16304        198 PILVLGLDNAGKSSIIKRIL---GEPI-----------ISLVP---TVG----FNRARVEYGNKYEVFLYDLGGSEDFRT  256 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~---G~~~-----------~~~~P---t~G----~t~~~i~i~g~~~i~~~D~~G~~~~r~  256 (537)
                      .|+|+|..|+|||||+-.|.   |...           ..+.|   ..|    .....+.+.+ ..+.++|+||+.++..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT-EEEEEECCCSSSSCST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC-eEEEEecCCchhhhHH
Confidence            48999999999999999984   3200           00000   011    1123556665 9999999999998876


Q ss_pred             HHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        257 IWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       257 ~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ....-+..           ++..++|+|+
T Consensus        87 e~~~~l~~-----------~D~avlVvda  104 (276)
T d2bv3a2          87 EVERSMRV-----------LDGAIVVFDS  104 (276)
T ss_dssp             THHHHHHH-----------CCEEEEEEET
T ss_pred             HHHHHHHh-----------hhheEEeccc
Confidence            66566666           8889999993

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.74  E-value=0.0028  Score=57.50  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++...|+++|.-++|||||++.|+|.
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhh
Confidence            35567999999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00033  Score=60.79  Aligned_cols=22  Identities=14%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++|+|++|||||||++.|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.72  E-value=0.00092  Score=57.44  Aligned_cols=105  Identities=28%  Similarity=0.534  Sum_probs=77.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLS  390 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd  390 (537)
                      ..+.++|.+++||+++++.|.+++.....++.+........+. ..+.++|..+.......+..+....+.++++++..+
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD   84 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCc-eEEEEeeccccccccccchhhhhhhhhhhhhhhhhh
Confidence            4578999999999999999999997766666665555544454 788899988887777777777788889999998887


Q ss_pred             cchhhhhhh---hhh----cCCcEEEEeccc-ch
Q psy16304        391 GRPDDRCQV---YLM----SCNCQVYLISAK-NL  416 (537)
Q Consensus       391 ~~~~~~~~i---~ll----~~G~ii~~g~nk-dl  416 (537)
                      .........   ...    ....++....++ |+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl  118 (169)
T d1upta_          85 RDRIGISKSELVAMLEEEELRKAILVVFANKQDM  118 (169)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             cchhhhccchhhhhhhhhccccceEEEEEeeccc
Confidence            776665441   111    234556566666 65

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00096  Score=57.49  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=66.2

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchh----------hHHHHHHHHHh
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE----------DFRTIWKQYLG  377 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~----------~~~~l~~~~~~  377 (537)
                      .+.++|.+++||+++++.|.|.....++...+..+.    .+..++ ..+.++||+|+.          .....+. .++
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~-~~~   79 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQ-EIE   79 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC-eeEEeccccccccCCccHHHHHHHHHHHH-HHH
Confidence            467899999999999999998776555544443322    233344 788899999851          1122333 345


Q ss_pred             cCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-ch
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl  416 (537)
                      ..+.+++|+|..+....+...++.......+....++ |+
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~  119 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV  119 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSS
T ss_pred             hCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccc
Confidence            6789999998888776665554333333434444444 54

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.57  E-value=0.00062  Score=59.27  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=23.6

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++.+|+|.|++||||||+.+.|+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            37889999999999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.00053  Score=61.12  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      |..|+|+||+|||||||++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            788999999999999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0043  Score=53.17  Aligned_cols=104  Identities=15%  Similarity=0.252  Sum_probs=68.5

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCch--------hhHHHHHHHHHhcC
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGS--------EDFRTIWKQYLGTV  379 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl--------~~~~~l~~~~~~~~  379 (537)
                      .+.++|.+++||++++++|.|.....+....+..+.    .+...+ .++.++|+.|+        .........++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC-ceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            567999999999999999998776555444443322    223344 78889998887        11111224556778


Q ss_pred             CEEEEEEeCCCcchhhhhhh--hh---hcCCcEEEEeccc-ch
Q psy16304        380 SQTLLVSHSLSGRPDDRCQV--YL---MSCNCQVYLISAK-NL  416 (537)
Q Consensus       380 ~~vIlVvdshd~~~~~~~~i--~l---l~~G~ii~~g~nk-dl  416 (537)
                      +.++++++..+....+....  .+   ...+.++....|| |+
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl  124 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI  124 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred             cccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhh
Confidence            89999998888766554441  12   2246667777887 65

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00048  Score=60.15  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|+|.|++|+|||||.+.|+..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.48  E-value=0.00071  Score=58.81  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++|.+|.|+|++||||||+-+.|+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999999853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.37  E-value=0.00097  Score=58.00  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=23.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|..|+|.|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999999999876

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.32  E-value=0.001  Score=59.42  Aligned_cols=25  Identities=24%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|.+++|+||+||||||+.+.|+..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999999843

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0055  Score=53.31  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCch---------hhHHHHHHHHHhc
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGS---------EDFRTIWKQYLGT  378 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl---------~~~~~l~~~~~~~  378 (537)
                      .+.++|.+++||++++++|.|.....++.+.+.++.    .+.... ..+.++|+.|.         ......+...+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc-cccccccccceeeeecccccccccccccccccc
Confidence            367899999999999999998776555444444332    233233 67889998885         2233334455667


Q ss_pred             CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      ++.++++++...........  .++...+.++....|| |+.
T Consensus        81 ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~  122 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL  122 (171)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred             CcEEEEeecccccccccccccccccccccccccccchhhhhh
Confidence            78888888766554443322  3344567777777788 763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.27  E-value=0.0047  Score=54.14  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCch-----------hhHHHHH----HHHHh
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS-----------EDFRTIW----KQYLG  377 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl-----------~~~~~l~----~~~~~  377 (537)
                      +.++|.+++||+++++.|.|. +.+++.+.+.++....... ..+.++||+|.           +.....+    ....+
T Consensus         3 I~lvG~~nvGKSsLin~l~~~-~~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC-CCSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             EEEECCCCCCHHHHHHHHhCC-CceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            678999999999999999864 3456666666666554343 45778999985           1111122    23345


Q ss_pred             cCCEEEEEEeCCCcchhhh-------------hhhhhhcCCcEEEEeccc-ch
Q psy16304        378 TVSQTLLVSHSLSGRPDDR-------------CQVYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~-------------~~i~ll~~G~ii~~g~nk-dl  416 (537)
                      ..+.+++|+|.........             ....+.+.+.++....|| |.
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~  133 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK  133 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeeh
Confidence            6788999997653221110             112233457777777777 64

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.001  Score=58.05  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++|+|.+|||||||+..|...
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5799999999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.22  E-value=0.00095  Score=57.79  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|+|.|++||||||+.+.|+-.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0017  Score=57.65  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+...|.++|++||||||+.+.+...
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            335678999999999999999988643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0013  Score=57.08  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+..+.|.|++||||||+.+.|+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0012  Score=57.47  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.|.|++|+|||||++.+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999876

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.08  E-value=0.0017  Score=58.09  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +..+|.|+||+||||||+.+.|+..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.04  E-value=0.0015  Score=55.60  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.|.|++|||||||.+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999988643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0019  Score=59.55  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+..++++|||+|+||||++-.|+-.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            445678999999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0017  Score=59.46  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|..+.|+||+|||||||++.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            4788999999999999999998753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0022  Score=57.48  Aligned_cols=104  Identities=18%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHh----cCCEEEEEEe
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG----TVSQTLLVSH  387 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~----~~~~vIlVvd  387 (537)
                      .+.++|.+++||+++++.|.++......++ ......+..++ ..+.++||+|.+.....|..++.    ..+.++++++
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~~~~~tt~-~~~~~~~~~~~-~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd   82 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD   82 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETTGGG-SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCeEEe-cceEEEEEeCC-eEEEEEecccccchhhHHHHHHHHHhhhccccceEEE
Confidence            467899999999999999998774322111 12222333344 78999999999766666654433    3457777887


Q ss_pred             CCC-cchhhhhhh----------hhhcCCcEEEEeccc-chh
Q psy16304        388 SLS-GRPDDRCQV----------YLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       388 shd-~~~~~~~~i----------~ll~~G~ii~~g~nk-dl~  417 (537)
                      +.+ ...++....          .....+.++....|| |+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~  124 (209)
T d1nrjb_          83 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  124 (209)
T ss_dssp             TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             EecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccc
Confidence            664 333333221          122367777778888 663

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=96.00  E-value=0.015  Score=53.59  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHh---CCCCc-------cccCceeeee--------------------------EEEEECCc
Q psy16304        197 VPILVLGLDNAGKSSIIKRIL---GEPII-------SLVPTVGFNR--------------------------ARVEYGNK  240 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~---G~~~~-------~~~Pt~G~t~--------------------------~~i~i~g~  240 (537)
                      .+++++|.-++|||||+..|.   |.-..       ......|++.                          ...... +
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~   88 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA-K   88 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS-S
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc-c
Confidence            348999999999999999994   22000       0001111111                          122223 4


Q ss_pred             EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304        241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC  285 (537)
Q Consensus       241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds  285 (537)
                      ..+.++|+||+.++-.........           ++..++++|+
T Consensus        89 ~~~~iiD~PGH~dfv~~~~~g~~~-----------aD~ailVvda  122 (222)
T d1zunb3          89 RKFIIADTPGHEQYTRNMATGAST-----------CDLAIILVDA  122 (222)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHTT-----------CSEEEEEEET
T ss_pred             eEEEEEeccchhhhhhhhcccccc-----------CceEEEEecc
Confidence            789999999999886554444444           7888888883

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.97  E-value=0.0016  Score=56.74  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|+|.|++||||||+.+.|...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.95  E-value=0.0017  Score=55.90  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.|.|++||||||+.+.|+..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.94  E-value=0.0016  Score=59.80  Aligned_cols=21  Identities=14%  Similarity=0.328  Sum_probs=19.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhC
Q psy16304        198 PILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +++++|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            589999999999999999974

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0017  Score=55.08  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.|+|++||||||+-+.|+-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.90  E-value=0.0057  Score=56.34  Aligned_cols=78  Identities=22%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHh---CCCC-c--------------------------cccCceeeee----EEEEECCcEE
Q psy16304        197 VPILVLGLDNAGKSSIIKRIL---GEPI-I--------------------------SLVPTVGFNR----ARVEYGNKYE  242 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~---G~~~-~--------------------------~~~Pt~G~t~----~~i~i~g~~~  242 (537)
                      ..||++|--++|||||+..|.   |.-. .                          ...-..|.+.    ....++ +..
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~-~~~   82 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-KYF   82 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-SCE
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC-Cce
Confidence            458999999999999998883   2100 0                          0001122221    233444 488


Q ss_pred             EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        243 VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       243 i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      +.++|+||+.+|..........           +++.++|+|+.
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~-----------~D~allVVda~  115 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQ-----------ADAAILVVSAK  115 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSC-----------CSEEEEEEECS
T ss_pred             eEEeeCCCcHHHHHHHHHHHHh-----------hceEEEEEecc
Confidence            9999999999887655554444           88888888843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0081  Score=56.07  Aligned_cols=78  Identities=22%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHh---CCCC---------------------cc---c---cCceeee----eEEEEECCcEE
Q psy16304        197 VPILVLGLDNAGKSSIIKRIL---GEPI---------------------IS---L---VPTVGFN----RARVEYGNKYE  242 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~---G~~~---------------------~~---~---~Pt~G~t----~~~i~i~g~~~  242 (537)
                      ..++++|--++|||||+..|.   |.-.                     +.   .   .-..|+|    ...+.+.+ .+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-~~   85 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-YQ   85 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-EE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-EE
Confidence            469999999999999998884   3200                     00   0   0012222    23455554 99


Q ss_pred             EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        243 VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       243 i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      +.++|+||+.+|-..+......           +++.++++|+.
T Consensus        86 i~iiDtPGH~df~~~~~~g~~~-----------~D~ailvvda~  118 (239)
T d1f60a3          86 VTVIDAPGHRDFIKNMITGTSQ-----------ADCAILIIAGG  118 (239)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSC-----------CSEEEEEEECS
T ss_pred             EEEEECCCcHHHHHHHHHHHHH-----------hCEEEEEEECC
Confidence            9999999999886544443333           78888888743

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.78  E-value=0.0025  Score=56.25  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|||-|++|||||||.+.|...
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0015  Score=57.81  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|.+|.|+|++||||||+-+.|+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.67  E-value=0.0025  Score=55.92  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|.|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.62  E-value=0.0031  Score=57.80  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++.+++|+||+||||||++-.|+..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.61  E-value=0.0034  Score=54.14  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...|.|.|++||||||+.+.|...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456888899999999999999876

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0034  Score=56.10  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +-.++.|+||+||||||+.+.|+..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0035  Score=57.62  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=21.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -.++++|||+|+||||++-.|+-.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0026  Score=56.82  Aligned_cols=21  Identities=33%  Similarity=0.738  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhCC
Q psy16304        199 ILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      |+|+||+|||||||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0029  Score=62.15  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +..+|||.|++|||||||++.|...
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.00089  Score=58.93  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             eEEEEeCCCCcHHHHHHHHh
Q psy16304        198 PILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~  217 (537)
                      ..+|+|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.0031  Score=56.44  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|+++|.+|+||||+.+.|+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.50  E-value=0.0031  Score=55.70  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|.|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.46  E-value=0.0039  Score=55.73  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++.+|.|+||+||||||+.+.|+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.43  E-value=0.0032  Score=55.97  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -+|.|+||+||||||+.+.|+-.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0036  Score=55.05  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ++.|+||+||||||..+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.36  E-value=0.0043  Score=55.58  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.-+++|+||+||||||+-+.|+-.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.32  E-value=0.0038  Score=54.32  Aligned_cols=21  Identities=24%  Similarity=0.581  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhCC
Q psy16304        199 ILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      |.|+|++||||||+-+.|+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.31  E-value=0.0037  Score=54.44  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++|+|++||||||+-+.|+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.29  E-value=0.0044  Score=54.13  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +++|.|++||||||+.+.|+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677899999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0044  Score=55.13  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|.|+||+||||||..+.|+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0041  Score=55.75  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhCC
Q psy16304        199 ILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      |+|+||+|||||||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.0031  Score=60.25  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=17.8

Q ss_pred             eEEEEeCCCCcHHHHHHHH
Q psy16304        198 PILVLGLDNAGKSSIIKRI  216 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L  216 (537)
                      ..+|+|+|||||||+|.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            6799999999999999887

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0042  Score=55.29  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..++|+||+|+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.20  E-value=0.0046  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|.|+||+||||||+.+.|+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999854

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.015  Score=57.11  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             EEEEeCCCCcHHHHHHHHh---CCCC---------ccccC---ceeeee----EEEEE--------------C-CcEEEE
Q psy16304        199 ILVLGLDNAGKSSIIKRIL---GEPI---------ISLVP---TVGFNR----ARVEY--------------G-NKYEVF  244 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~---G~~~---------~~~~P---t~G~t~----~~i~i--------------~-g~~~i~  244 (537)
                      |+|+|.-|+|||||+..|.   |.-.         ....+   ..|.|.    ..+.+              . +++.+.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~in   99 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLIN   99 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEEE
Confidence            9999999999999999984   3200         00000   112111    11211              0 236799


Q ss_pred             EeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304        245 LYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG  286 (537)
Q Consensus       245 ~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~  286 (537)
                      ++|+||+.++.......+..           +++.++|+|+.
T Consensus       100 liDtPGh~dF~~ev~~al~~-----------~D~allVVda~  130 (341)
T d1n0ua2         100 LIDSPGHVDFSSEVTAALRV-----------TDGALVVVDTI  130 (341)
T ss_dssp             EECCCCCCSSCHHHHHHHHT-----------CSEEEEEEETT
T ss_pred             EEcCCCcHHHHHHHHHHHhh-----------cCceEEEEecc
Confidence            99999999887666565665           89999999943

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0048  Score=54.47  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -+|.|+|++||||||+.+.|+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.027  Score=49.13  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHHHH------------HHH
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFRTI------------WKQ  374 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~~l------------~~~  374 (537)
                      ..+.++|..++||+++++.|.+.....+.......    ...+..++ ..+.++|+.|.......            +..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD   87 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EEEEESSCSCC-----------CCSCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC-ceeeeeccCCccccccccccccccchhHHHHH
Confidence            45779999999999999999988755443332222    22333344 78889998887433332            223


Q ss_pred             HHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                      ..+..+.+++|+|...........  .++...+.++....|+ |+
T Consensus        88 ~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~  132 (186)
T d1mkya2          88 SIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDL  132 (186)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred             HHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhh
Confidence            446678999999877654443333  3445567777777777 65

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.14  E-value=0.0053  Score=56.18  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+..+.|+||+|+||||++-.|+..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.09  E-value=0.005  Score=56.54  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=17.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...+++||||+|+||||++-.|+-.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.02  E-value=0.0055  Score=59.92  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +..++||.|++|||||||+..|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            567899999999999999999985

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.93  E-value=0.0057  Score=53.42  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=19.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.|+|++||||||+-+.|+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.90  E-value=0.0049  Score=57.34  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .-|.|.||+|+|||||.+.|++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999986

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.85  E-value=0.028  Score=49.28  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=67.8

Q ss_pred             cEEEeccCccCccchhhhhcCCCceeeec------cccc----ccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCE
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPIISLVP------TVGF----NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ  381 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~------ti~l----a~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~  381 (537)
                      .+.++|-+++||+++++.|++.......+      ..++    .......++ ..+.++|+.|...+.......+...+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~l~~~d~   85 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPGHADLIRAVVSAADIIDL   85 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSSHHHHHHHHHHHTTSCCE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC-ccccccccccccccccchhhhhhhccc
Confidence            46799999999999999998643211111      1111    112222244 788899999997777767667778899


Q ss_pred             EEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                      ++++++..+........  .++.+.|.++....|| |+
T Consensus        86 ~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~  123 (179)
T d1wb1a4          86 ALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDN  123 (179)
T ss_dssp             EEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTS
T ss_pred             cccccccccccchhhhhhhhhhhhcCCcceeccccccc
Confidence            99999888764433222  4445677777777788 65

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0086  Score=54.55  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|..|+|-|+.||||||+.+.|...
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.01  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +|..|+|-|+.||||||+++.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999999875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.0088  Score=59.14  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      +...+|+|+|||||||++..|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4467899999999999999983

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0089  Score=53.95  Aligned_cols=23  Identities=35%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|||-|+.||||||+.+.|...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.46  E-value=0.024  Score=52.89  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=17.9

Q ss_pred             eEEEEeCCCCcHHHHHHHH
Q psy16304        198 PILVLGLDNAGKSSIIKRI  216 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L  216 (537)
                      .|+++|.-++|||||+..|
T Consensus        26 Ni~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHH
Confidence            4899999999999999998

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.30  E-value=0.008  Score=53.37  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +..+|+|-|..||||||+++.|...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.012  Score=52.05  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|||.|+.||||||+.+.|.-.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            57999999999999999998643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.012  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|+|.||+||||||+-+.|+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.023  Score=54.05  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCCCC--c----cccCceeeeeEEEEE--CCcEEEEEeecCCCc
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGEPI--I----SLVPTVGFNRARVEY--GNKYEVFLYDLGGSE  252 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~----~~~Pt~G~t~~~i~i--~g~~~i~~~D~~G~~  252 (537)
                      .+|+++|+-++|||||+|.|.|..+  .    ....|.|+-.-...+  ..+..+-++|+.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            4699999999999999999998653  1    113566621111111  124567778887764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.011  Score=54.33  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+.+++++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.019  Score=52.86  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=21.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...+.|.||+|+||||+.+.|+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999986

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.014  Score=53.28  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+.|.||+|+||||+.+.|+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.64  E-value=0.019  Score=51.66  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+|+|-||+||||||+-+.|+..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            356888899999999999999865

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.63  E-value=0.017  Score=52.47  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.4

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .++|.+|-|.|.+||||||+-+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.02  Score=50.17  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=22.6

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .+|..+.|.|++|+|||||...++.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3799999999999999999988875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.51  E-value=0.016  Score=53.02  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..+.|.||+|+||||+.+.|+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            34899999999999999999976

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.50  E-value=0.021  Score=51.93  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|..|++=|+.||||||+++.|...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999999854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.50  E-value=0.021  Score=54.58  Aligned_cols=24  Identities=38%  Similarity=0.735  Sum_probs=22.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      .+++||.-+||||||+|.|.|.++
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.47  E-value=0.017  Score=56.26  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+..+.+.|+.|||||||++.|.+.
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             hCCCEEEEeeccccchHHHHHHhhh
Confidence            4566899999999999999999987

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.39  E-value=0.038  Score=48.08  Aligned_cols=103  Identities=14%  Similarity=0.034  Sum_probs=56.9

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhh-------HHHHHHHHHhcCCE
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSED-------FRTIWKQYLGTVSQ  381 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~-------~~~l~~~~~~~~~~  381 (537)
                      +.++|.+++||+++++.|+|...............    .....+ ..+.++||+|...       .....-......+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCC-CeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            56899999999999999998764332211111111    122122 6799999999621       11112233456678


Q ss_pred             EEEEEeCCCcchhh--hhhhhhh-----cCCcEEEEeccc-ch
Q psy16304        382 TLLVSHSLSGRPDD--RCQVYLM-----SCNCQVYLISAK-NL  416 (537)
Q Consensus       382 vIlVvdshd~~~~~--~~~i~ll-----~~G~ii~~g~nk-dl  416 (537)
                      ++++++........  ....++.     ..++++....|| |+
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~  125 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL  125 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT
T ss_pred             hhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhh
Confidence            88888654432211  1112221     134556666677 66

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.35  E-value=0.049  Score=51.57  Aligned_cols=24  Identities=38%  Similarity=0.638  Sum_probs=22.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGEPI  221 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~~~  221 (537)
                      .++++|.-+||||||+|.|+|.++
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.013  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +..|+|-|+-||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.06  E-value=0.026  Score=51.75  Aligned_cols=25  Identities=56%  Similarity=0.650  Sum_probs=21.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+..+.|.|+.|+|||||++.++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            4678999999999999999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.90  E-value=0.011  Score=54.40  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=64.0

Q ss_pred             EEEeccCccCccchhhhhcCCCc---e--eeecccc----------------cccceeccCCceEEEEEecCchhhHHHH
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPI---I--SLVPTVG----------------FNRARVEYGNKYEVFLYDLGGSEDFRTI  371 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~r---q--rvs~ti~----------------la~all~~~e~p~lllLDT~Gl~~~~~l  371 (537)
                      +.++|-.++||+++++.|.+...   +  .+.....                .....+..++ ..+.++||+|...+...
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL-PGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTC-CEEEEECCCTTSCCTTS
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccc-cccccccccceeccccc
Confidence            66899999999999998865320   0  0000000                0011122233 78999999997544333


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS  417 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~  417 (537)
                      ....+..++.+++|+|..+........  .++...+.++...-|| |+.
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~  135 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI  135 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred             chhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCC
Confidence            333345689999999887654443333  4555677788888888 763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.11  Score=46.69  Aligned_cols=105  Identities=12%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             ccEEEeccCccCccchhhhhcCC---Cc--eee---------------ecccccccceeccCCceEEEEEecCchhhHHH
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGE---PI--ISL---------------VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT  370 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG---~r--qrv---------------s~ti~la~all~~~e~p~lllLDT~Gl~~~~~  370 (537)
                      ..+..+|-.+.||++++++|.+-   .+  .++               .-|+..+...+..++ ..+.++||+|-..+..
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~-~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSGGGHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC-eEEEEEeCCCchhhHH
Confidence            34668899999999999988421   00  000               012222333344455 7999999999876666


Q ss_pred             HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc-EEEEeccc-ch
Q psy16304        371 IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC-QVYLISAK-NL  416 (537)
Q Consensus       371 l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~-ii~~g~nk-dl  416 (537)
                      ....-++.++++++|+|..+........  ......|. .+...-|| |+
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM  132 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEeccc
Confidence            5545557789999999888776654433  33334553 34444566 65

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.024  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3889999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.74  E-value=0.031  Score=51.22  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...+.|.||+|+||||+++.|+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999876

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.68  E-value=0.028  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|+|-|..||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999853

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.59  E-value=0.03  Score=53.88  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.-+.|+||+|+|||.|.+.|+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            345789999999999999999875

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.41  E-value=0.035  Score=48.25  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ++|.++.|-|+=|||||||.+.++.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            4799999999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.032  Score=50.32  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=20.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|||.|..||||||..+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            46899999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.25  E-value=0.033  Score=50.05  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+|||.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            46899999999999999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.22  E-value=0.027  Score=51.64  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+.+.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.033  Score=50.48  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+.+.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            3789999999999999998865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.10  E-value=0.04  Score=49.61  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=22.5

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .+|..+.|.|++|+|||||...++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999988764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=0.12  Score=51.51  Aligned_cols=102  Identities=18%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CccEEEeccCccCccchhhhhcCCCc--eeee--cccccccce---eccCCceEEEEEecCchhhH----HHHHHH-HHh
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPI--ISLV--PTVGFNRAR---VEYGNKYEVFLYDLGGSEDF----RTIWKQ-YLG  377 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~r--qrvs--~ti~la~al---l~~~e~p~lllLDT~Gl~~~----~~l~~~-~~~  377 (537)
                      ...+.++|.+++||+++++.|.|...  ....  .....++..   ...+. +.+.+|||+|....    ...... -..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            45578999999999999999987431  1111  111122211   11122 67899999998322    222222 133


Q ss_pred             cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ..+.++++. +++... .+..  ..+.+.|+.+..+-|+
T Consensus       135 ~~d~~l~~~-~~~~~~-~d~~l~~~l~~~~k~~~~V~nK  171 (400)
T d1tq4a_         135 EYDFFIIIS-ATRFKK-NDIDIAKAISMMKKEFYFVRTK  171 (400)
T ss_dssp             GCSEEEEEE-SSCCCH-HHHHHHHHHHHTTCEEEEEECC
T ss_pred             cceEEEEec-CCCCCH-HHHHHHHHHHHcCCCEEEEEeC
Confidence            456666666 444322 2222  4556678888888888

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.09  E-value=0.033  Score=51.84  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .-+.|.||+|+|||++.+.|+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            34899999999999999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.048  Score=52.00  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.+|.+.+|+|+.|+|||||+..|+..
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            558999999999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.79  E-value=0.037  Score=49.99  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+.++|+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.69  E-value=0.025  Score=52.26  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhCC
Q psy16304        199 ILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       199 vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.|.||+|+||||+++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            556699999999999999865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.05  Score=50.29  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHh
Q psy16304        196 SVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      +..+.|.|||.+||||+||.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4568899999999999999985

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.049  Score=52.49  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -.+|||-|++|||||||.+.|...
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHH
Confidence            468999999999999999888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.55  E-value=0.14  Score=44.78  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             cEEEeccCccCccchhhhhcCCCc-eeeeccccccccee--ccCCceEEEEEecCch----------hhHHHHHHHHH--
Q psy16304        312 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--EYGNKYEVFLYDLGGS----------EDFRTIWKQYL--  376 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~all--~~~e~p~lllLDT~Gl----------~~~~~l~~~~~--  376 (537)
                      .+.++|.+++||+++++.|+|... .+++.....+....  ...  ..+.++|+.+.          .....+...+.  
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKSEREAWGRMIETYITT  102 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc--ccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence            477999999999999999998652 23322222222211  112  34455664332          11112222222  


Q ss_pred             -hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304        377 -GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL  416 (537)
Q Consensus       377 -~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl  416 (537)
                       ...+.+++++|+..........  .++-..+.++....|+ |+
T Consensus       103 ~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~  146 (195)
T d1svia_         103 REELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK  146 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccchhhhhhhhhccccccccccccccccccccCcceechhhccc
Confidence             2345678888765443322222  3445567778888887 65

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.058  Score=50.49  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .-+.|.||+|+|||++.+.|+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45889999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.03  E-value=0.036  Score=52.29  Aligned_cols=54  Identities=28%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             CccEEEeccCccCccchhhhhcCCCceeeeccccccccee--ccCCceEEEEEecCch
Q psy16304        310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV--EYGNKYEVFLYDLGGS  365 (537)
Q Consensus       310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all--~~~e~p~lllLDT~Gl  365 (537)
                      ...+.++|.+++||+++++.|.|..+.+++++.|+++...  ..+  +.+.++||+|.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~--~~~~l~DTPGi  167 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG--KELELLDTPGI  167 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET--TTEEEEECCCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECC--CCeEEecCCCc
Confidence            4557799999999999999999998999999888887653  223  68999999998

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.00  E-value=0.064  Score=49.93  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ..+|+.+.|.|++|+|||||+..++-
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34899999999999999999887764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.99  E-value=0.052  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -+.|.||+|+|||+|.+.|++.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            3899999999999999999976

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.98  E-value=0.058  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             CeEEEEeCCCCcHHHHHHHHh
Q psy16304        197 VPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      ..+.|.|||.+||||++|.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            478999999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.068  Score=48.00  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ...-+.|||++|+|||+++.-|+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3456899999999999999888753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.56  E-value=0.066  Score=48.57  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=21.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      .+|..+.|.|++|+|||||.-.++
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHH
Confidence            379999999999999999987664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.48  E-value=0.07  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=0.105  Sum_probs=22.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .+|..+.|.|++|+|||||...++-
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3799999999999999999888863

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.46  E-value=0.064  Score=48.64  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +.+|..+.|.|++|+|||||...++-.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            347999999999999999999887653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.36  E-value=0.089  Score=49.00  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -+.|.||+|+|||++.+.++..
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            3899999999999999999985

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.34  E-value=0.068  Score=47.69  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      .+|..+.|.|++|+|||||...++
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            389999999999999999986554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.25  E-value=0.24  Score=45.82  Aligned_cols=56  Identities=29%  Similarity=0.452  Sum_probs=41.1

Q ss_pred             CCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCch
Q psy16304        309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGS  365 (537)
Q Consensus       309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl  365 (537)
                      ....+.++|.+++||+++++.+.|.....+++..+.++.    ....++ ..+.++||+|+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g-~~i~viDTPGl   90 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTPGL   90 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-EEEEEEECCCS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc-EEEEEEeeecc
Confidence            345688999999999999999998776555443333332    223355 78999999998

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.081  Score=49.87  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ...-+.|||++|+|||+++.-|+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345689999999999999998875

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.16  E-value=0.45  Score=44.41  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             EEEeccCccCccchhhhh---cCCCce--e----------------eecccccccceeccCCceEEEEEecCchhhHHHH
Q psy16304        313 ILVLGLDNAGKSSIIKRI---LGEPII--S----------------LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI  371 (537)
Q Consensus       313 L~llGl~~~gKs~li~~L---SgG~rq--r----------------vs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l  371 (537)
                      +.++|-.+.||++++..|   +|--.+  +                -..++..+...+..++ ..+.++||+|-..+...
T Consensus         5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc-cceeEEccCchhhhhhh
Confidence            457888889999988877   321100  0                0012223333444455 78999999999777766


Q ss_pred             HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304        372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK  414 (537)
Q Consensus       372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk  414 (537)
                      ...-++..+++++|+|..+........  ....+.|.+....-||
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk  128 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTK  128 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccc
Confidence            666667789999999988876665444  3445677777777777

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.084  Score=47.74  Aligned_cols=26  Identities=12%  Similarity=-0.023  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +.+|..+.|.|++|+|||||...++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999888763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.78  E-value=0.08  Score=50.38  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      -.+|||-|+.|||||||...|.-
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHH
Confidence            36799999999999999987754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.63  E-value=0.074  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.5

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      ..-+.|.||+|+|||+|.+.+++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            445899999999999999999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.59  E-value=0.16  Score=43.98  Aligned_cols=77  Identities=13%  Similarity=0.086  Sum_probs=44.9

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeecccccc----cceecc-CCceEEEEEecCchhh--------HHHHHHHHHhcC
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEY-GNKYEVFLYDLGGSED--------FRTIWKQYLGTV  379 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~-~e~p~lllLDT~Gl~~--------~~~l~~~~~~~~  379 (537)
                      +.++|.+++||+++++.|+|.... +....+.+    ...... ++ -.+.++||+|+..        ....+..+ ..+
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~-~~~   80 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHI-ERT   80 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHH-HHC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHH-HHh
Confidence            568999999999999999976642 22211211    111111 32 5788999999721        12233333 345


Q ss_pred             CEEEEEEeCCCcc
Q psy16304        380 SQTLLVSHSLSGR  392 (537)
Q Consensus       380 ~~vIlVvdshd~~  392 (537)
                      ...+++++.+...
T Consensus        81 ~~i~~~v~~~~~~   93 (185)
T d1lnza2          81 RVIVHVIDMSGLE   93 (185)
T ss_dssp             CEEEEEEESSCSS
T ss_pred             hhhhheeeecccc
Confidence            6666666555443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.50  E-value=0.051  Score=51.82  Aligned_cols=24  Identities=25%  Similarity=0.173  Sum_probs=18.0

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -.+|||-|++||||||+.+.|...
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999988764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.11  Score=47.03  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.4

Q ss_pred             eEEEEeCCCCcHHHHHHHHhC
Q psy16304        198 PILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .|+|=|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.093  Score=47.80  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++.|-|.=|||||||++.+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            35789999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=88.40  E-value=0.11  Score=51.05  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++..+.+.||+|+||||+.+.|++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999976

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.14  Score=47.14  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.4

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      +|..+.|.|++|+|||||+-.|+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            58899999999999999987664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=87.73  E-value=0.054  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -.+.|+|++|+|||||.+.+.+.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999999986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.62  E-value=0.15  Score=44.84  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .|.=|.|.|++|+||||+.-.|..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            577799999999999999877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.30  E-value=0.16  Score=44.64  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .|.-+.|.|++|+|||||...|...
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5777999999999999998777653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=1  Score=37.99  Aligned_cols=52  Identities=27%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             EEEeccCccCccchhhhhcCCCceeeeccccccc----ceeccCCceEEEEEecCch
Q psy16304        313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGS  365 (537)
Q Consensus       313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~----all~~~e~p~lllLDT~Gl  365 (537)
                      +.++|.+++||+++++.|+|.....++......+    .....+. ..+..+|+.+.
T Consensus         8 I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~   63 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGL   63 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC-ceeEeecCCCc
Confidence            5689999999999999999887554433323222    2222243 67777886665

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.04  E-value=0.16  Score=46.08  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      +|||.|.-||||||..+.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.98  E-value=0.16  Score=48.74  Aligned_cols=24  Identities=17%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .-.+.++||+|+|||.|.+.|+..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhh
Confidence            346889999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=86.55  E-value=0.17  Score=50.36  Aligned_cols=26  Identities=35%  Similarity=0.268  Sum_probs=22.6

Q ss_pred             CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        194 FRSVPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       194 ~~G~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .++-.+.+.||.|+||||++..+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            35667999999999999999999875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.37  E-value=0.19  Score=47.42  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        193 DFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       193 ~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      +.+|++++|+|+.|+|||||+..++.
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            55899999999999999999888764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.25  E-value=0.18  Score=47.20  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      ....++|+|..|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=86.21  E-value=0.21  Score=43.60  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             CCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        195 RSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       195 ~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .|.=|.|.|++|+||||+.-.|..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            577899999999999998766553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=86.11  E-value=0.88  Score=40.16  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             cEEEeccCccCccchhhhhcC------CCcee---------eec----ccccccceeccCCceEEEEEecCchhhHHHHH
Q psy16304        312 PILVLGLDNAGKSSIIKRILG------EPIIS---------LVP----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW  372 (537)
Q Consensus       312 ~L~llGl~~~gKs~li~~LSg------G~rqr---------vs~----ti~la~all~~~e~p~lllLDT~Gl~~~~~l~  372 (537)
                      .+..+|-.+.||+++++.|.+      +...+         ...    |+..+...+...+ ..+.++||+|-..+....
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~-~~~~~iDtPGh~~f~~~~   83 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA-RHYAHTDCPGHADYVKNM   83 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-CEEEEEECSSHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece-eeEEeecCcchHHHHHHH
Confidence            466888889999999988863      11100         000    1111222222233 688999999997766655


Q ss_pred             HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC-cEEEEeccc-ch
Q psy16304        373 KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN-CQVYLISAK-NL  416 (537)
Q Consensus       373 ~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G-~ii~~g~nk-dl  416 (537)
                      ..-...++++++|+|..+......-.  ......| +.+...-|| |+
T Consensus        84 ~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~  131 (196)
T d1d2ea3          84 ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA  131 (196)
T ss_dssp             HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             HHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccc
Confidence            55456789999999888765543322  2222333 455666677 65

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=85.94  E-value=1.1  Score=38.87  Aligned_cols=82  Identities=18%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             ccEEEeccCccCccchhhhhcCCCceeeec--ccccccce-------------------------eccCC-ceEEEEEec
Q psy16304        311 VPILVLGLDNAGKSSIIKRILGEPIISLVP--TVGFNRAR-------------------------VEYGN-KYEVFLYDL  362 (537)
Q Consensus       311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~--ti~la~al-------------------------l~~~e-~p~lllLDT  362 (537)
                      ..+..+|-.+.||+++++.|+|....+...  ..+++...                         ..... ...+.++||
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt   85 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   85 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence            346688988889999999998754222110  00111100                         00000 145789999


Q ss_pred             CchhhHHHHHHHHHhcCCEEEEEEeCCCcc
Q psy16304        363 GGSEDFRTIWKQYLGTVSQTLLVSHSLSGR  392 (537)
Q Consensus       363 ~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~  392 (537)
                      +|...+......-...++++++|++..+..
T Consensus        86 PGh~~f~~~~~~~~~~~d~~ilvvda~~g~  115 (195)
T d1kk1a3          86 PGHEALMTTMLAGASLMDGAILVIAANEPC  115 (195)
T ss_dssp             SSHHHHHHHHHHCGGGCSEEEEEEETTSCS
T ss_pred             chhhhhhHHhhcccccccccccccchhhhh
Confidence            999777666655566789999999888764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.93  E-value=0.14  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304        197 VPILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .-|.||||+|+|||-|.+.|++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999863

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.21  Score=44.72  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      -+.|.||+|+||||+.+.++..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4899999999999999988864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.62  E-value=0.23  Score=45.27  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.|.||+|+||||+.+.++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3788999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.76  E-value=0.25  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=18.4

Q ss_pred             CCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        196 SVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       196 G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .--+.|||++|+|||+++.-|+.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34469999999999999876653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.11  E-value=0.32  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.2

Q ss_pred             CeEEEEeCCCCcHHHHHHHHh
Q psy16304        197 VPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       197 ~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      ..+.|+|++|+|||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            468999999999999987654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.42  E-value=0.31  Score=45.84  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRILG  218 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G  218 (537)
                      .+-+|.+++|+|+.|+|||+|+..+.-
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             cccCCceEeeccCCCCChHHHHHHHHh
Confidence            456899999999999999999876543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=81.23  E-value=0.25  Score=45.90  Aligned_cols=16  Identities=44%  Similarity=0.696  Sum_probs=13.5

Q ss_pred             eEEEEeCCCCcHHHHH
Q psy16304        198 PILVLGLDNAGKSSII  213 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL  213 (537)
                      -+.|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3688999999999764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.68  E-value=0.41  Score=45.22  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             cCCCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304        192 FDFRSVPILVLGLDNAGKSSIIKRIL  217 (537)
Q Consensus       192 ~~~~G~~vgLVG~NGAGKSTLL~~L~  217 (537)
                      .+-+|++++|+|+.|+|||+|+..+.
T Consensus        64 pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          64 PIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             CccCCCEEEeecCCCCChHHHHHHHH
Confidence            35689999999999999999986554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=80.26  E-value=0.35  Score=45.35  Aligned_cols=16  Identities=25%  Similarity=0.721  Sum_probs=13.7

Q ss_pred             eEEEEeCCCCcHHHHH
Q psy16304        198 PILVLGLDNAGKSSII  213 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL  213 (537)
                      .+.|.|++|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3788999999999865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=80.03  E-value=0.36  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             eEEEEeCCCCcHHHHHHHHhCC
Q psy16304        198 PILVLGLDNAGKSSIIKRILGE  219 (537)
Q Consensus       198 ~vgLVG~NGAGKSTLL~~L~G~  219 (537)
                      .+.++||+|+|||.|.+.|++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4556799999999999999975