Psyllid ID: psy1630

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccccHHHHHHccccccEEHHHHHcHHHHHcccccHHHHHHHHHccccEEEcccccEEcccccccEEEcccccccccHHHHHHHccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEHEccHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHcccHHHHHHHHHcccEEEEcccccEEccccccEEEEEEEccccccHHHHHHHHcccccccEEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MYLTTYDLACVCCRENLANDAYLLSqmdndqyvpiwtvanfNQVKKLTKDIKLITEVLRespnvqvdeegikvrpnhKRCIVILreipdstpleeirglfsgkscprfiscefahnnswyitfenDEDAQKAYRYLREDVREFQNKESK
Flexible Loop (DISEMBL)
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITevlrespnvqvdeegikvrpnhkrcivilreipdstpleeIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK
Low Complexity Region (SEG)
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK
Disordered region (IsUnstruct)
*YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL*************
Disordered Region (DISOPRED)
*YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDV*E**N****
Disordered Region (DISEMBL)
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVR********
Disordered Region (DISPRO)
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9I7T7	1531	La-related protein CG1150	no	N/A	0.892	0.086	0.766	9e-61
Q71RC2	724	La-related protein 4 OS=H	no	N/A	0.899	0.185	0.671	7e-54
Q8BWW4	719	La-related protein 4 OS=M	yes	N/A	0.892	0.184	0.669	1e-51
Q92615	738	La-related protein 4B OS=	no	N/A	0.912	0.184	0.647	4e-49
Q6A0A2	741	La-related protein 4B OS=	no	N/A	0.912	0.183	0.654	8e-49
Q4G0J3	582	La-related protein 7 OS=H	no	N/A	0.798	0.204	0.323	4e-06
Q4R627	581	La-related protein 7 OS=M	N/A	N/A	0.798	0.204	0.323	4e-06
Q05CL8	570	La-related protein 7 OS=M	no	N/A	0.798	0.208	0.316	5e-06
Q7ZWE3	555	La-related protein 7 OS=D	no	N/A	0.805	0.216	0.289	8e-06
Q6ZQ58	1072	La-related protein 1 OS=M	no	N/A	0.402	0.055	0.4	1e-05

>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505 PE=1 SV=2

 Score =  231 bits (590), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/133 (76%), Positives = 121/133 (90%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMD+DQYVPI+TVA FN V+KLT DI LITEVLRESPNVQVD++G++V
Sbjct: 282 RENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRV 341

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPN KRCI+ILREI ++TPL++++ LFS +SCPR ISCEFA NNSWYITFE+DEDAQKAY
Sbjct: 342 RPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDEDAQKAY 401

Query: 134 RYLREDVREFQNK 146
           +YLRE+V+EFQ K
Sbjct: 402 KYLREEVKEFQGK 414

Drosophila melanogaster (taxid: 7227)

>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3

 Score =  209 bits (531), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 116/134 (86%)

Query: 13  CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
            RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G K
Sbjct: 132 SRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 191

Query: 73  VRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKA 132
           VRP+HKRCIVILREIP++TP+EE++GLF  ++CP+ ISCEFAHN++WYITF++D DAQ+A
Sbjct: 192 VRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQA 251

Query: 133 YRYLREDVREFQNK 146
           ++YLRE+V+ FQ K
Sbjct: 252 FKYLREEVKTFQGK 265

Plays a role in the regulation of cell morphology and cytoskeletal organization.

Homo sapiens (taxid: 9606)

>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2

 Score =  201 bits (512), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/133 (66%), Positives = 115/133 (86%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENL+ D YL+SQMD+DQ+VPIWTVAN  ++KKLT +  LI EVLR SP VQVDE+G KV
Sbjct: 129 RENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKV 188

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RP+HKRCIVILREIP++TP+EE++ LF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct: 189 RPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 248

Query: 134 RYLREDVREFQNK 146
           +YLRE+V+ FQ K
Sbjct: 249 KYLREEVKTFQGK 261

Plays a role in the regulation of cell morphology and cytoskeletal organization.

Mus musculus (taxid: 10090)

>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3

 Score =  193 bits (490), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 88/136 (64%), Positives = 111/136 (81%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLA+D YL+SQMD+DQYVPI TVAN + +KKL+ D+ LI EVLR  P VQVDE+G KV
Sbjct: 170 RENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKV 229

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPN  RCIVILREI +STP+EE+  LF G + P+FI+CEFA+N++W+ITFE + DAQ+AY
Sbjct: 230 RPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAY 289

Query: 134 RYLREDVREFQNKESK 149
           +YLRE+V+ FQ K  K
Sbjct: 290 KYLREEVKTFQGKPIK 305

Homo sapiens (taxid: 9606)

>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2

 Score =  192 bits (487), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 89/136 (65%), Positives = 111/136 (81%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLA+D YL+SQMD+DQYVPI TVAN + +KKL+ D+ LI EVLR  P VQVDE+G KV
Sbjct: 172 RENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKV 231

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPN  RCIVILREI +STP+EE+  LF G + P+FI+CEFA+N++W+ITFE + DAQ+AY
Sbjct: 232 RPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAY 291

Query: 134 RYLREDVREFQNKESK 149
           +YLRE+VR FQ K  K
Sbjct: 292 KYLREEVRTFQGKPIK 307

Mus musculus (taxid: 10090)

>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 16  NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           NL  D +L  Q++   D YV I  + +FN++KKLT D KLI   LR S  V++D EG ++
Sbjct: 50  NLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRI 109

Query: 74  R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
           R   P  +R        V +  +P +     I  +F GK C   +     H  S      
Sbjct: 110 RRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 167

Query: 119 -WYITFENDEDAQKAYRYL 136
             ++ FE  E A KA  +L
Sbjct: 168 FAFVEFETKEQAAKAIEFL 186

Negative transcriptional regulator of polymerase II genes, acting by means of the 7SK RNP system. Within the 7SK RNP complex, the positive transcription elongation factor b (P-TEFb) is sequestered in an inactive form, preventing RNA polymerase II phosphorylation and subsequent transcriptional elongation.

Homo sapiens (taxid: 9606)

>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 16  NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           NL  D +L  Q++   D YV I  + +FN++KKLT D KLI   LR S  V++D EG ++
Sbjct: 50  NLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRI 109

Query: 74  R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
           R   P  +R        V +  +P +     I  +F GK C   +     H  S      
Sbjct: 110 RRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 167

Query: 119 -WYITFENDEDAQKAYRYL 136
             ++ FE  E A KA  +L
Sbjct: 168 FAFVEFETKEQAAKAIEFL 186

Negative transcriptional regulator of polymerase II genes, acting by means of the 7SK RNP system. Within the 7SK RNP complex, the positive transcription elongation factor b (P-TEFb) is sequestered in an inactive form, preventing RNA polymerase II phosphorylation and subsequent transcriptional elongation.

Macaca fascicularis (taxid: 9541)

>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 16  NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           NL  D +L  Q++   D YV I  + +FN++KKLT D KLI   L+ S  V++D EG ++
Sbjct: 44  NLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRI 103

Query: 74  R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
           R   P  +R        V +  +P +     I  +F GK C   +     H  S      
Sbjct: 104 RRKKPLGERPKDEEERTVYVELLPKNVTHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 161

Query: 119 -WYITFENDEDAQKAYRYL 136
             ++ FE  E A KA  +L
Sbjct: 162 FAFVEFETKEQAAKAIEFL 180

Negative transcriptional regulator of polymerase II genes, acting by means of the 7SK RNP system. Within the 7SK RNP complex, the positive transcription elongation factor b (P-TEFb) is sequestered in an inactive form, preventing RNA polymerase II phosphorylation and subsequent transcriptional elongation.

Mus musculus (taxid: 10090)

>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%)

Query: 16  NLANDAYLLS--QMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           NL  D ++ S  +   D Y+ I  +  FN++K LT D+KLI   L+ S  V+V++EG ++
Sbjct: 58  NLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRI 117

Query: 74  RPNHKRC---------IVILREIPDSTPLEEIRGLFS--GK----SCPRFISCEFAHNNS 118
           R                V +  +P +     +  +FS  G     S PR+ S   +   +
Sbjct: 118 RRKEPLGETPKDVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFA 177

Query: 119 WYITFENDEDAQKAYRYL 136
            ++ FE  E AQKA   L
Sbjct: 178 -FVEFETQEQAQKAVEML 194

Danio rerio (taxid: 7955)

>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 15  ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
           +NL  D +L  +MD D ++PI  +A+F++V+ LT DI LI   L++S  V++ EE ++ R
Sbjct: 393 DNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKVRRR 452

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
307207798	690	La-related protein 4 [Harpegnathos salta	0.892	0.192	0.887	8e-70
322800400	734	hypothetical protein SINV_07518 [Solenop	0.892	0.181	0.887	2e-69
328781153	763	PREDICTED: la-related protein 4-like [Ap	0.892	0.174	0.894	3e-69
345495153	775	PREDICTED: hypothetical protein LOC10012	0.892	0.171	0.894	4e-69
332024012	719	La-related protein [Acromyrmex echinatio	0.892	0.184	0.879	5e-69
380028007	861	PREDICTED: uncharacterized protein LOC10	0.892	0.154	0.894	9e-69
383858676	765	PREDICTED: la-related protein 4-like [Me	0.892	0.173	0.887	9e-69
307179421	836	La-related protein 4 [Camponotus florida	0.892	0.159	0.872	2e-68
350401767	762	PREDICTED: hypothetical protein LOC10074	0.892	0.174	0.887	2e-68
158295876	1780	AGAP006460-PA [Anopheles gambiae str. PE	0.892	0.074	0.834	2e-67

>gi|307207798|gb|EFN85416.1| La-related protein 4 [Harpegnathos saltator]

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 118/133 (88%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 155 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 214

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPD+TPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 215 RPNHKRCIVILREIPDNTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 274

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 275 RFLREEVREFQGK 287

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800400|gb|EFZ21404.1| hypothetical protein SINV_07518 [Solenopsis invicta]

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/133 (88%), Positives = 127/133 (95%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 130 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 189

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPDSTPLE+++ LFSG+ CPR ISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 190 RPNHKRCIVILREIPDSTPLEDVKNLFSGEGCPRIISCEFAHNSSWYVTFESDEDAQKAY 249

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 250 RFLREEVREFQGK 262

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781153|ref|XP_394951.3| PREDICTED: la-related protein 4-like [Apis mellifera]

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 119/133 (89%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 231 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 290

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPDSTPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 291 RPNHKRCIVILREIPDSTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 350

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 351 RFLREEVREFQGK 363

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495153|ref|XP_001603906.2| PREDICTED: hypothetical protein LOC100120245 [Nasonia vitripennis]

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 119/133 (89%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLT DIKLITEVLRESPNVQVDEEG KV
Sbjct: 227 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTTDIKLITEVLRESPNVQVDEEGQKV 286

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPDSTPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 287 RPNHKRCIVILREIPDSTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 346

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 347 RFLREEVREFQGK 359

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024012|gb|EGI64230.1| La-related protein [Acromyrmex echinatior]

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/133 (87%), Positives = 127/133 (95%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVL+ESPNVQVDEEG KV
Sbjct: 124 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLKESPNVQVDEEGQKV 183

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPDSTPLE+++ LFSG+ CPR ISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 184 RPNHKRCIVILREIPDSTPLEDVKNLFSGEGCPRIISCEFAHNSSWYVTFESDEDAQKAY 243

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 244 RFLREEVREFQGK 256

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028007|ref|XP_003697703.1| PREDICTED: uncharacterized protein LOC100872910 [Apis florea]

 Score =  264 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 119/133 (89%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 231 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 290

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPDSTPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 291 RPNHKRCIVILREIPDSTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 350

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 351 RFLREEVREFQGK 363

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858676|ref|XP_003704825.1| PREDICTED: la-related protein 4-like [Megachile rotundata]

 Score =  264 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 118/133 (88%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 231 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 290

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPD+TPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 291 RPNHKRCIVILREIPDNTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 350

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 351 RFLREEVREFQGK 363

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179421|gb|EFN67745.1| La-related protein 4 [Camponotus floridanus]

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/133 (87%), Positives = 127/133 (95%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 236 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 295

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIP+STPLE+++ LFSG+ CPR ISCEFAHN+SWY+TFE+D+DAQKAY
Sbjct: 296 RPNHKRCIVILREIPESTPLEDVKNLFSGEGCPRLISCEFAHNSSWYVTFESDDDAQKAY 355

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 356 RFLREEVREFQGK 368

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401767|ref|XP_003486255.1| PREDICTED: hypothetical protein LOC100743128 [Bombus impatiens]

 Score =  263 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/133 (88%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG KV
Sbjct: 128 RENLANDTYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGQKV 187

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREIPD+TPLE+++ LFSG+ CPRFISCEFAHN+SWY+TFE+DEDAQKAY
Sbjct: 188 RPNHKRCIVILREIPDNTPLEDVKNLFSGEGCPRFISCEFAHNSSWYVTFESDEDAQKAY 247

Query: 134 RYLREDVREFQNK 146
           R+LRE+VREFQ K
Sbjct: 248 RFLREEVREFQGK 260

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295876|ref|XP_001688876.1| AGAP006460-PA [Anopheles gambiae str. PEST] gi|157016242|gb|EDO63882.1| AGAP006460-PA [Anopheles gambiae str. PEST]

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/133 (83%), Positives = 128/133 (96%)

Query: 14  RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
           RENLAND YLL+QMDNDQYVPIWT+ANFNQVKKLTKDIKLITEVLRESPNVQVDE+G+KV
Sbjct: 181 RENLANDTYLLTQMDNDQYVPIWTIANFNQVKKLTKDIKLITEVLRESPNVQVDEDGLKV 240

Query: 74  RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
           RPNHKRCIVILREI D+TP+E+++ +F G++CPRFISCEFAHNNSWYITFE+DEDAQ+A+
Sbjct: 241 RPNHKRCIVILREISDNTPVEDVKNIFQGENCPRFISCEFAHNNSWYITFESDEDAQRAF 300

Query: 134 RYLREDVREFQNK 146
           RYLRE+V+EFQ K
Sbjct: 301 RYLREEVKEFQGK 313

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0035424	1531	CG11505 [Drosophila melanogast	0.892	0.086	0.766	2.1e-52
UNIPROTKB|E9PDG5	445	LARP4 "La-related protein 4" [	0.892	0.298	0.676	1.5e-49
UNIPROTKB|G3XAA8	653	LARP4 "La-related protein 4" [	0.892	0.203	0.676	1.5e-49
UNIPROTKB|Q71RC2	724	LARP4 "La-related protein 4" [	0.892	0.183	0.676	1.5e-49
UNIPROTKB|Q96J85	375	LARP4 "La-related protein 4" [	0.892	0.354	0.676	1.5e-49
UNIPROTKB|F1MHD9	621	LARP4 "Uncharacterized protein	0.892	0.214	0.676	5.2e-49
UNIPROTKB|E2R028	721	LARP4 "Uncharacterized protein	0.892	0.184	0.669	6.7e-49
UNIPROTKB|F1PIU8	723	LARP4 "Uncharacterized protein	0.892	0.183	0.669	6.7e-49
UNIPROTKB|F1SH87	699	LARP4 "Uncharacterized protein	0.892	0.190	0.669	6.7e-49
UNIPROTKB|H9KZD5	750	LARP4 "Uncharacterized protein	0.892	0.177	0.661	6.8e-49

FB|FBgn0035424 CG11505 [Drosophila melanogaster (taxid:7227)]

 Score = 556 (200.8 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 102/133 (76%), Positives = 121/133 (90%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENLAND YLLSQMD+DQYVPI+TVA FN V+KLT DI LITEVLRESPNVQVD++G++V
Sbjct:   282 RENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRV 341

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RPN KRCI+ILREI ++TPL++++ LFS +SCPR ISCEFA NNSWYITFE+DEDAQKAY
Sbjct:   342 RPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDEDAQKAY 401

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+EFQ K
Sbjct:   402 KYLREEVKEFQGK 414

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PDG5 LARP4 "La-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/133 (67%), Positives = 116/133 (87%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   133 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 192

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++GLF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   193 RPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAF 252

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   253 KYLREEVKTFQGK 265

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3XAA8 LARP4 "La-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/133 (67%), Positives = 116/133 (87%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   133 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 192

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++GLF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   193 RPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAF 252

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   253 KYLREEVKTFQGK 265

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q71RC2 LARP4 "La-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/133 (67%), Positives = 116/133 (87%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   133 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 192

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++GLF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   193 RPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAF 252

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   253 KYLREEVKTFQGK 265

GO:0003723 "RNA binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0022604 "regulation of cell morphogenesis" evidence=IMP

UNIPROTKB|Q96J85 LARP4 "La-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/133 (67%), Positives = 116/133 (87%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:    63 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 122

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++GLF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   123 RPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAF 182

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   183 KYLREEVKTFQGK 195

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MHD9 LARP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 90/133 (67%), Positives = 115/133 (86%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ+VPIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   132 RENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 191

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++ LF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   192 RPSHKRCIVILREIPETTPIEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 251

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   252 KYLREEVKTFQGK 264

GO:0022604 "regulation of cell morphogenesis" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R028 LARP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 89/133 (66%), Positives = 115/133 (86%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   130 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 189

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++ LF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   190 RPSHKRCIVILREIPETTPIEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 249

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   250 KYLREEVKTFQGK 262

GO:0022604 "regulation of cell morphogenesis" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PIU8 LARP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 89/133 (66%), Positives = 115/133 (86%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   132 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 191

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++ LF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   192 RPSHKRCIVILREIPETTPIEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 251

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   252 KYLREEVKTFQGK 264

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SH87 LARP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 89/133 (66%), Positives = 115/133 (86%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct:   131 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 190

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RP+HKRCIVILREIP++TP+EE++ LF  ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct:   191 RPSHKRCIVILREIPETTPIEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 250

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   251 KYLREEVKTFQGK 263

GO:0022604 "regulation of cell morphogenesis" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H9KZD5 LARP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 512 (185.3 bits), Expect = 6.8e-49, P = 6.8e-49
 Identities = 88/133 (66%), Positives = 114/133 (85%)

Query:    14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
             RENL+ D YL+SQMD+DQ+VPIWT+AN   +KKLT D+ LI +VLR SP VQVDE G KV
Sbjct:   133 RENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKV 192

Query:    74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
             RPNHKRCI+ILREIP++TP+EE++ LF  ++CP+ ISCEFAHNN+WY+TF++D DAQ+A+
Sbjct:   193 RPNHKRCIIILREIPETTPVEEVKALFKNENCPKVISCEFAHNNNWYVTFQSDTDAQQAF 252

Query:   134 RYLREDVREFQNK 146
             +YLRE+V+ FQ K
Sbjct:   253 KYLREEVKTFQGK 265

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0022604 "regulation of cell morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BWW4	LARP4_MOUSE	No assigned EC number	0.6691	0.8926	0.1849	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
cd12430	76	cd12430, RRM_LARP4_5_like, RNA recognition motif i	2e-37
cd08031	75	cd08031, LARP_4_5_like, La RNA-binding domain of p	1e-35
cd12707	77	cd12707, RRM_LARP4, RNA recognition motif in verte	7e-32
cd12706	77	cd12706, RRM_LARP5, RNA recognition motif in verte	2e-29
smart00715	80	smart00715, LA, Domain in the RNA-binding Lupus La	9e-26
cd08035	75	cd08035, LARP_4, La RNA-binding domain of La-relat	2e-25
cd08036	75	cd08036, LARP_5, La RNA-binding domain of La-relat	5e-25
cd07323	75	cd07323, LAM, LA motif RNA-binding domain	1e-22
pfam05383	59	pfam05383, La, La domain	3e-18
cd08033	77	cd08033, LARP_6, La RNA-binding domain of La-relat	1e-15
cd08034	73	cd08034, LARP_1_2, La RNA-binding domain proteins	3e-11
cd08032	82	cd08032, LARP_7, La RNA-binding domain of La-relat	3e-09
cd08037	73	cd08037, LARP_1, La RNA-binding domain of La-relat	2e-08
cd08029	76	cd08029, LA_like_fungal, La-motif domain of fungal	1e-07
cd08028	82	cd08028, LARP_3, La RNA-binding domain of La-relat	2e-07
cd08038	73	cd08038, LARP_2, La RNA-binding domain of La-relat	3e-07
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	0.002
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	0.003

>gnl|CDD|240876 cd12430, RRM_LARP4_5_like, RNA recognition motif in La-related protein 4 (LARP4), La-related protein 5 (LARP5 or LARP4B) and similar proteins

 Score =  122 bits (308), Expect = 2e-37
 Identities = 46/67 (68%), Positives = 58/67 (86%)

Query: 80  CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139
           CIVILREIP+STP EE++ LFSG++CP+F SC F  NNSW++TFE +EDAQ+AYRYLRE+
Sbjct: 1   CIVILREIPESTPEEEVKALFSGQNCPKFTSCRFDINNSWFVTFETEEDAQEAYRYLREE 60

Query: 140 VREFQNK 146
           V+ FQ K
Sbjct: 61  VKTFQGK 67

This subfamily corresponds to the RRM of LARP4 and LARP5. LARP4 is a cytoplasmic factor that can bind poly(A) RNA and interact with poly(A) binding protein (PABP). It may play a role in promoting translation by stabilizing mRNA. LARP5 is a cytosolic protein that co-sediments with polysomes and accumulates upon stress induction in cellular stress granules. It can interact with the cytosolic poly(A) binding protein 1 (PABPC1) and the receptor for activated C Kinase (RACK1), a component of the 40S ribosomal subunit. LARP5 may function as a stimulatory factor of translation through bridging mRNA factors of the 3' end with initiating ribosomes. Both, LARP4 and LARP5, are structurally related to the La autoantigen. Like other La-related proteins (LARPs) family members, LARP4 and LARP5 contain a La motif (LAM) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|153400 cd08031, LARP_4_5_like, La RNA-binding domain of proteins similar to La-related proteins 4 and 5

 Score =  117 bits (295), Expect = 1e-35
 Identities = 52/62 (83%), Positives = 57/62 (91%)

Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
          RENLANDAYLLSQMD+DQYVPIWT+ANFN++KKLT DI LI E LRESPNVQVDE+G KV
Sbjct: 14 RENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKV 73

Query: 74 RP 75
          RP
Sbjct: 74 RP 75

This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|241151 cd12707, RRM_LARP4, RNA recognition motif in vertebrate La-related protein 4 (LARP4)

 Score =  108 bits (271), Expect = 7e-32
 Identities = 44/67 (65%), Positives = 60/67 (89%)

Query: 80  CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139
           CI+ILREIP++TP+EE++ LF  ++CP+ ISCEFAHNN+WYITF++D DAQ+A+RYLRE+
Sbjct: 1   CIIILREIPETTPVEEVKALFKSENCPKVISCEFAHNNNWYITFQSDTDAQQAFRYLREE 60

Query: 140 VREFQNK 146
           V+ FQ K
Sbjct: 61  VKTFQGK 67

This subgroup corresponds to the RRM of LARP4, a cytoplasmic factor that can bind poly(A) RNA and interact with poly(A) binding protein (PABP). It may play a role in promoting translation by stabilizing mRNA. LARP4 is structurally related to the La autoantigen. Like other La-related proteins (LARPs) family members, LARP4 contains a La motif (LAM) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 77

>gnl|CDD|241150 cd12706, RRM_LARP5, RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

 Score =  102 bits (254), Expect = 2e-29
 Identities = 44/70 (62%), Positives = 60/70 (85%)

Query: 80  CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139
           CIVILREIP+STP+EE+  LF G + P+FI+CEFA+N++W+ITFE++ DAQ+AY+YLRE+
Sbjct: 1   CIVILREIPESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFESEADAQQAYKYLREE 60

Query: 140 VREFQNKESK 149
           V+ FQ K  K
Sbjct: 61  VKTFQGKPIK 70

This subgroup corresponds to the RRM of LARP5, a cytosolic protein that co-sediments with polysomes and accumulates upon stress induction in cellular stress granules. It can interact with the cytosolic poly(A) binding protein 1 (PABPC1) and the receptor for activated C Kinase (RACK1), a component of the 40S ribosomal subunit. LARP5 may function as a stimulatory factor of translation through bridging mRNA factors of the 3' end with initiating ribosomes. Like other La-related proteins (LARPs) family members, LARP5 contains a La motif (LAM) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 77

>gnl|CDD|128955 smart00715, LA, Domain in the RNA-binding Lupus La protein; unknown function

 Score = 92.7 bits (231), Expect = 9e-26
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 14 RENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
           ENL  D +L  +MD ND YVPI T+A+F +VK LT D+ LI E LR SP ++V E+G+K
Sbjct: 17 DENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLK 76

Query: 73 VRPN 76
          VR  
Sbjct: 77 VRRR 80

Length = 80

>gnl|CDD|153404 cd08035, LARP_4, La RNA-binding domain of La-related protein 4

 Score = 92.0 bits (228), Expect = 2e-25
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
          RENL+ D YL+SQMD+DQ+VPIWTVAN   +KKLT D+ LI +VLR SP VQVDE G KV
Sbjct: 14 RENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKV 73

Query: 74 RP 75
          RP
Sbjct: 74 RP 75

This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|153405 cd08036, LARP_5, La RNA-binding domain of La-related protein 5

 Score = 90.9 bits (225), Expect = 5e-25
 Identities = 42/62 (67%), Positives = 51/62 (82%)

Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
          RENLA+D YL+SQMD+DQYVPI TVAN + +KKL+ D+ LI +VLR  P VQVDE+G KV
Sbjct: 14 RENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKV 73

Query: 74 RP 75
          RP
Sbjct: 74 RP 75

This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|153396 cd07323, LAM, LA motif RNA-binding domain

 Score = 84.9 bits (211), Expect = 1e-22
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
            ENL  D +L S MD+D +VP+  +A+FN+VKKLT D++LI E LR+S  V+V E+G K
Sbjct: 13 SDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTK 72

Query: 73 VRP 75
          VR 
Sbjct: 73 VRR 75

This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 75

>gnl|CDD|203243 pfam05383, La, La domain

 Score = 73.0 bits (180), Expect = 3e-18
 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 14 RENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRES 61
           ENL  D +L  QMD +  YVPI T+A+F ++KKLT D+ LI E LR S
Sbjct: 11 DENLPRDKFLRKQMDKDPGYVPISTIASFKRIKKLTTDVNLIVEALRSS 59

This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain. Length = 59

>gnl|CDD|153402 cd08033, LARP_6, La RNA-binding domain of La-related protein 6

 Score = 66.9 bits (164), Expect = 1e-15
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 15 ENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
          ENL  DA+LL  +  + + YVPI  +A+F +VK LT+D +++   LR S  + V E+G K
Sbjct: 15 ENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKK 74

Query: 73 VR 74
          VR
Sbjct: 75 VR 76

This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 77

>gnl|CDD|153403 cd08034, LARP_1_2, La RNA-binding domain proteins similar to La-related proteins 1 and 2

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
          +NL  D +L  +MD + Y+PI  +A+F++V+ LT D+ LI E L++S  V++ +E  KVR
Sbjct: 15 DNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDE--KVR 72

This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|153401 cd08032, LARP_7, La RNA-binding domain of La-related protein 7

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
          NL  D +L  Q++   D Y+ I  + +FN++KKLT D KLI   L+ S  V+++ EG ++
Sbjct: 21 NLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRI 80

Query: 74 R 74
          R
Sbjct: 81 R 81

LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation. Length = 82

>gnl|CDD|153406 cd08037, LARP_1, La RNA-binding domain of La-related protein 1

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 21/58 (36%), Positives = 39/58 (67%)

Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
          +NL  D +L  +MD D ++P+  +A+F++V+ LT DI LI + L++S  V++ +  I+
Sbjct: 15 DNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIR 72

This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|153398 cd08029, LA_like_fungal, La-motif domain of fungal proteins similar to the La autoantigen

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 14 RENLANDAYL--LSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI 71
            NL  D +L  L+   N+ +VPI T+A+F ++++  + ++ + E LRES  ++V E+G 
Sbjct: 14 DSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRF-QPLEAVVEALRESELLEVSEDGE 72

Query: 72 KVR 74
           VR
Sbjct: 73 NVR 75

This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 76

>gnl|CDD|153397 cd08028, LARP_3, La RNA-binding domain of La-related protein 3

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 16 NLANDAYLLSQM-DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRES--PNVQVDEEGIK 72
          NL  D +L  Q+ ++D +VP+  +  FN++K L+ D ++I + L++S    ++V E+  K
Sbjct: 20 NLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTK 79

Query: 73 VR 74
          +R
Sbjct: 80 IR 81

This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B). Length = 82

>gnl|CDD|153407 cd08038, LARP_2, La RNA-binding domain of La-related protein 2

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
          ENL  D +L  +MD   ++PI  +A F +V+ LT ++ LI E L++S  V++ ++ I+
Sbjct: 15 ENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKIR 72

This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Length = 73

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 82  VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW------YITFENDEDAQKAYRY 135
           + +  +P  T  E++R LFS        S     +         ++ FE+ EDA+KA   
Sbjct: 1   LFVGNLPPDTTEEDLRELFS--KFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEA 58

Query: 136 L 136
           L
Sbjct: 59  L 59

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 82  VILREIPDSTPLEEIRGLFSGKSCP---RFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138
           + +R +P S   E++R  FS        R +  +       ++ F + EDA+ A + L  
Sbjct: 1   LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAALKKL-- 58

Query: 139 DVREFQNK 146
           +      +
Sbjct: 59  NGLVLDGR 66

k.a. RRM, RBD, or RNP domain). Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG2591|consensus	684		100.0
cd08036	75	LARP_5 La RNA-binding domain of La-related protein	100.0
cd08035	75	LARP_4 La RNA-binding domain of La-related protein	100.0
KOG1855|consensus	484		99.98
cd08031	75	LARP_4_5_like La RNA-binding domain of proteins si	99.97
cd08033	77	LARP_6 La RNA-binding domain of La-related protein	99.97
cd08032	82	LARP_7 La RNA-binding domain of La-related protein	99.97
smart00715	80	LA Domain in the RNA-binding Lupus La protein; unk	99.97
cd08029	76	LA_like_fungal La-motif domain of fungal proteins	99.97
cd08028	82	LARP_3 La RNA-binding domain of La-related protein	99.96
cd08038	73	LARP_2 La RNA-binding domain of La-related protein	99.96
cd07323	75	LAM LA motif RNA-binding domain. This domain is fo	99.96
cd08037	73	LARP_1 La RNA-binding domain of La-related protein	99.96
cd08034	73	LARP_1_2 La RNA-binding domain proteins similar to	99.96
cd08030	90	LA_like_plant La-motif domain of plant proteins si	99.96
PF05383	61	La: La domain; InterPro: IPR006630 Human Ro ribonu	99.93
KOG4213|consensus	205		99.89
KOG0121|consensus	153		99.67
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.65
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.62
COG5193	438	LHP1 La protein, small RNA-binding pol III transcr	99.56
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.55
KOG0107|consensus	195		99.53
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.52
PLN03120	260	nucleic acid binding protein; Provisional	99.51
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.5
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.48
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.45
KOG0114|consensus	124		99.44
smart00362	72	RRM_2 RNA recognition motif.	99.41
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.41
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.39
KOG0125|consensus	376		99.38
PLN03121	243	nucleic acid binding protein; Provisional	99.36
KOG0122|consensus	270		99.35
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.34
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.33
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.32
KOG0131|consensus	203		99.32
PLN03213	759	repressor of silencing 3; Provisional	99.32
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.31
KOG0130|consensus	170		99.3
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.29
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.28
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.28
KOG0148|consensus	321		99.27
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.26
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.25
smart00360	71	RRM RNA recognition motif.	99.25
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.24
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.22
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.21
KOG0113|consensus	335		99.2
KOG4207|consensus	256		99.18
COG5193	438	LHP1 La protein, small RNA-binding pol III transcr	99.17
KOG0149|consensus	247		99.15
KOG0111|consensus	298		99.14
KOG0144|consensus	510		99.13
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.11
KOG0105|consensus	241		99.1
KOG0108|consensus	435		99.1
KOG0124|consensus	544		99.08
smart00361	70	RRM_1 RNA recognition motif.	99.05
KOG0127|consensus	678		99.04
KOG0117|consensus	506		99.03
KOG0123|consensus	369		99.02
KOG0145|consensus	360		99.01
KOG0117|consensus	506		99.0
KOG0126|consensus	219		98.99
KOG2590|consensus	448		98.97
KOG0144|consensus	510		98.97
KOG4212|consensus	608		98.95
KOG0127|consensus	678		98.88
KOG0145|consensus	360		98.87
KOG4660|consensus	549		98.87
KOG0148|consensus	321		98.86
KOG4206|consensus	221		98.79
KOG4212|consensus	608		98.77
KOG0147|consensus	549		98.76
KOG0153|consensus	377		98.67
KOG0132|consensus	894		98.65
KOG0110|consensus	725		98.65
KOG0110|consensus	725		98.58
KOG0146|consensus	371		98.55
KOG0109|consensus	346		98.53
KOG0123|consensus	369		98.52
KOG0124|consensus	544		98.5
KOG0533|consensus	243		98.49
KOG4208|consensus	214		98.47
KOG0415|consensus	479		98.45
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	98.44
KOG0109|consensus	346		98.43
KOG4209|consensus	231		98.4
KOG0116|consensus	419		98.33
KOG0106|consensus	216		98.32
KOG4454|consensus	267		98.22
KOG4211|consensus	510		98.19
KOG4205|consensus	311		98.14
KOG0131|consensus	203		98.14
KOG0146|consensus	371		98.12
KOG1457|consensus	284		98.04
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	98.04
KOG4661|consensus	940		97.98
KOG1548|consensus	382		97.98
KOG4205|consensus	311		97.94
KOG0106|consensus	216		97.88
KOG4211|consensus	510		97.85
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	97.85
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.81
KOG1995|consensus	351		97.81
KOG0151|consensus	877		97.8
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.66
KOG1457|consensus	284		97.54
KOG4307|consensus	944		97.42
KOG1190|consensus	492		97.41
KOG0226|consensus	290		97.25
KOG4206|consensus	221		97.25
KOG0120|consensus	500		97.25
KOG1190|consensus	492		97.24
KOG1548|consensus	382		97.05
KOG0129|consensus	520		97.04
KOG0120|consensus	500		97.03
KOG2314|consensus	698		96.88
KOG0147|consensus	549		96.84
KOG4210|consensus	285		96.79
KOG2202|consensus	260		96.76
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	96.76
KOG0105|consensus	241		96.7
KOG0128|consensus	881		96.63
KOG1365|consensus	508		96.57
KOG0129|consensus	520		96.52
KOG3152|consensus	278		96.43
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	96.43
KOG1365|consensus	508		96.39
PF09421	989	FRQ: Frequency clock protein; InterPro: IPR018554	96.22
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	96.1
KOG2416|consensus	718		95.53
KOG1456|consensus	494		95.11
KOG0128|consensus	881		95.05
KOG2068|consensus	327		94.76
KOG4849|consensus	498		94.63
KOG2193|consensus	584		94.56
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	94.51
KOG1456|consensus	494		94.27
KOG1996|consensus	378		94.01
KOG0112|consensus	975		93.75
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	93.66
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	93.07
KOG0115|consensus	275		92.79
KOG4676|consensus	479		92.7
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	91.86
KOG4307|consensus	944		91.84
KOG4676|consensus	479		90.86
KOG2135|consensus	526		90.22
KOG2278|consensus	207		87.84
PF01885	186	PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA	87.62
KOG4285|consensus	350		87.2
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	87.15
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	85.41
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	84.09
KOG0112|consensus	975		83.41
PRK00819	179	RNA 2'-phosphotransferase; Reviewed	82.56

>KOG2591|consensus

Probab=100.00  E-value=6.8e-36  Score=245.97  Aligned_cols=147  Identities=66%  Similarity=1.101  Sum_probs=144.1

Q ss_pred             ccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCceeEE
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIV   82 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl   82 (149)
                      .+++|||||||.+||..|.||..+|++|.||||.+++.|+.|++|++|+++|.++|++|+.|+|++++.+||+..++|.+
T Consensus        99 ~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekVrp~~kRcIv  178 (684)
T KOG2591|consen   99 LLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKVRPNHKRCIV  178 (684)
T ss_pred             HHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCccccccCcceeEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          83 ILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        83 ~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++.||+.+.+|+|+.+|+.-.++++|+|++..+..|||+|++.+||++|++.|+...++|.||+|+
T Consensus       179 ilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm  245 (684)
T KOG2591|consen  179 ILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM  245 (684)
T ss_pred             EEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999984

>cd08036 LARP_5 La RNA-binding domain of La-related protein 5

Probab=100.00  E-value=1.9e-35  Score=186.88  Aligned_cols=74  Identities=59%  Similarity=0.855  Sum_probs=72.2

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      .+|++||||||||+||++|.||+++|+++|||||+++++|+|||+||.|.+.|.+||+.|+.|+|+++|.+|||
T Consensus         2 e~i~kQvEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp   75 (75)
T cd08036           2 ELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP   75 (75)
T ss_pred             hhhhcceeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08035 LARP_4 La RNA-binding domain of La-related protein 4

Probab=100.00  E-value=6.7e-35  Score=185.54  Aligned_cols=74  Identities=59%  Similarity=0.881  Sum_probs=72.0

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      ..|++||||||||+||++|.||+++|+++|||||++|++|+||++||.|.+.|.+||+.|+.|+|+++|.+|||
T Consensus         2 e~i~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp   75 (75)
T cd08035           2 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP   75 (75)
T ss_pred             hHHHhhHHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>KOG1855|consensus

Probab=99.98  E-value=2.6e-33  Score=225.09  Aligned_cols=135  Identities=29%  Similarity=0.438  Sum_probs=125.3

Q ss_pred             cccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCC----
Q psy1630           4 TTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH----   77 (149)
Q Consensus         4 i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~----   77 (149)
                      |.+||||||||+||.+|.||.++|.  ++|||||.++++|+|||+||.|+..+..||+.|..|+||+|+.||||..    
T Consensus       144 Iv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~  223 (484)
T KOG1855|consen  144 IVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPE  223 (484)
T ss_pred             HHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCC
Confidence            6789999999999999999999996  8999999999999999999999999999999999999999999999863    


Q ss_pred             ------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------------------eecCeeEEEEeccHHHHHHH
Q psy1630          78 ------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------------------AHNNSWYITFENDEDAQKAY  133 (149)
Q Consensus        78 ------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------------------~~kg~afVeF~~~e~A~~Ai  133 (149)
                            +.+||.+.|||.+-.-+.|.++|+.+|.|+.|++-.                  ..+-+|+|||+..+.|.+|.
T Consensus       224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~  303 (484)
T KOG1855|consen  224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR  303 (484)
T ss_pred             ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence                  578999999999999999999999999999998721                  13678999999999999999


Q ss_pred             HHHHH
Q psy1630         134 RYLRE  138 (149)
Q Consensus       134 ~~l~~  138 (149)
                      +.++.
T Consensus       304 e~~~~  308 (484)
T KOG1855|consen  304 ELLNP  308 (484)
T ss_pred             Hhhch
Confidence            88855

>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5

Probab=99.97  E-value=1.4e-33  Score=180.53  Aligned_cols=74  Identities=73%  Similarity=1.053  Sum_probs=71.9

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      ..|++||||||||+||++|.||+++|+++|||||++|++|+||++++.|.+.|.+||+.|+.|+|++|+++|||
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~   75 (75)
T cd08031           2 ELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP   75 (75)
T ss_pred             hHHHHHHHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999996

This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08033 LARP_6 La RNA-binding domain of La-related protein 6

Probab=99.97  E-value=4e-33  Score=179.28  Aligned_cols=74  Identities=36%  Similarity=0.589  Sum_probs=71.4

Q ss_pred             cccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      ..|++||||||||+||++|.||+++|  +++|||||+++++|+||++++.|.+.|.+||+.|+.|||++|+++|||
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR   77 (77)
T cd08033           2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR   77 (77)
T ss_pred             hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence            45899999999999999999999999  589999999999999999999999999999999999999999999997

This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08032 LARP_7 La RNA-binding domain of La-related protein 7

Probab=99.97  E-value=3.8e-33  Score=181.13  Aligned_cols=74  Identities=32%  Similarity=0.460  Sum_probs=71.5

Q ss_pred             cccccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      ..|++||||||||+||++|.||+++|+  ++|||||+++++|+||++|+.|.+.|.+||+.|+.||+++++++|||
T Consensus         7 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR   82 (82)
T cd08032           7 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR   82 (82)
T ss_pred             HHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence            458999999999999999999999997  79999999999999999999999999999999999999999999997

LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.

>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function

Probab=99.97  E-value=3.6e-32  Score=176.50  Aligned_cols=74  Identities=45%  Similarity=0.713  Sum_probs=71.8

Q ss_pred             ccccccceeeccccccchhhhhhhcCC-CceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCC
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMDN-DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPN   76 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~-~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~   76 (149)
                      .|++||||||||+||++|.||+++|+. +|||||+++++|+||++++.|.+.|.+||+.|+.|++++|+.+|||.
T Consensus         6 ~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~   80 (80)
T smart00715        6 KIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR   80 (80)
T ss_pred             HHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence            589999999999999999999999996 99999999999999999999999999999999999999999999984

>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen

Probab=99.97  E-value=6.7e-32  Score=173.45  Aligned_cols=72  Identities=29%  Similarity=0.473  Sum_probs=69.2

Q ss_pred             ccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      .|++||||||||+||++|.||+++|  +++|||||++|++|+||++|+.+ +.|.+||+.|+.|+|++||.+|||
T Consensus         3 ~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR   76 (76)
T cd08029           3 EIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR   76 (76)
T ss_pred             HHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence            5899999999999999999999999  49999999999999999999976 999999999999999999999997

This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08028 LARP_3 La RNA-binding domain of La-related protein 3

Probab=99.96  E-value=1e-31  Score=174.67  Aligned_cols=73  Identities=27%  Similarity=0.457  Sum_probs=70.7

Q ss_pred             ccccccceeeccccccchhhhhhhcC-CCceeeeEEeechhhhhhhchhhhHHHHHHhhCC--CcccccccccccC
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEEGIKVRP   75 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~-~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~--~lev~~d~~~vrr   75 (149)
                      .|++||||||||+||++|.||+++|+ ++|||||++|++|+|||+++.|.+.|.+||+.|+  .|||++|+.+|||
T Consensus         7 ~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VRR   82 (82)
T cd08028           7 KIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIRR   82 (82)
T ss_pred             HHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccCC
Confidence            47899999999999999999999997 6999999999999999999999999999999999  9999999999997

This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).

>cd08038 LARP_2 La RNA-binding domain of La-related protein 2

Probab=99.96  E-value=9.6e-32  Score=170.54  Aligned_cols=70  Identities=30%  Similarity=0.495  Sum_probs=67.1

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccc
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI   71 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~   71 (149)
                      ..|++||||||||+||++|.||+++|+++|||||+++++|+||++|+.|.+.|.+||+.|+.||+++++.
T Consensus         2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~~   71 (73)
T cd08038           2 EYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKI   71 (73)
T ss_pred             hHHHhhHHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCcc
Confidence            3589999999999999999999999999999999999999999999999999999999999999998764

This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd07323 LAM LA motif RNA-binding domain

Probab=99.96  E-value=1.4e-31  Score=172.06  Aligned_cols=75  Identities=44%  Similarity=0.643  Sum_probs=72.5

Q ss_pred             CcccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           1 MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         1 ~~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      +..|++||||||||+||++|.||+++|+++|||||+++++|+||++++.|.+.|.+|++.|+.|++++++.+|||
T Consensus         1 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr   75 (75)
T cd07323           1 LEKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR   75 (75)
T ss_pred             ChHHHhhhHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999986

This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08037 LARP_1 La RNA-binding domain of La-related protein 1

Probab=99.96  E-value=8.4e-32  Score=170.82  Aligned_cols=70  Identities=30%  Similarity=0.494  Sum_probs=66.9

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccc
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI   71 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~   71 (149)
                      +.|++||||||||+||++|.||+++|+++|||||+++++|+||++|+.|.+.|.+||+.|+.||++++..
T Consensus         2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~~~   71 (73)
T cd08037           2 DYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKI   71 (73)
T ss_pred             hHHHHHHHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecchh
Confidence            3689999999999999999999999999999999999999999999999999999999999999998753

This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2

Probab=99.96  E-value=1.2e-31  Score=170.69  Aligned_cols=72  Identities=33%  Similarity=0.510  Sum_probs=68.0

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP   75 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr   75 (149)
                      ..|++||||||||+||++|.||+++|+++|||||+++++|+||++++.|.+.|.+||+.|+.|++++  .+||+
T Consensus         2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~   73 (73)
T cd08034           2 EYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC   73 (73)
T ss_pred             hHHHhhHHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence            3589999999999999999999999999999999999999999999999999999999999999998  55653

This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen

Probab=99.96  E-value=7.1e-31  Score=173.00  Aligned_cols=73  Identities=26%  Similarity=0.418  Sum_probs=68.7

Q ss_pred             ccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchh------------hhHHHHHHhhCCCccccc
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKD------------IKLITEVLRESPNVQVDE   68 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d------------~~~i~~al~~S~~lev~~   68 (149)
                      -|++||||||||+||++|.||+++|  +++|||||++|++|+||++|+.+            .+.|++||+.|+.|+|++
T Consensus         4 ~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levse   83 (90)
T cd08030           4 KVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVSE   83 (90)
T ss_pred             HHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEcC
Confidence            4789999999999999999999999  58999999999999999999853            679999999999999999


Q ss_pred             ccccccC
Q psy1630          69 EGIKVRP   75 (149)
Q Consensus        69 d~~~vrr   75 (149)
                      |+++|||
T Consensus        84 D~~~VRR   90 (90)
T cd08030          84 DGKRVGR   90 (90)
T ss_pred             CCCccCC
Confidence            9999997

This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La

Probab=99.93  E-value=1.6e-27  Score=147.33  Aligned_cols=58  Identities=45%  Similarity=0.676  Sum_probs=52.9

Q ss_pred             cccccceeeccccccchhhhhhhcCC--CceeeeEEeechhhhhhhc-hhhhHHHHHHhhC
Q psy1630           4 TTYDLACVCCRENLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLT-KDIKLITEVLRES   61 (149)
Q Consensus         4 i~~q~e~yfs~~Nl~~d~~l~~~~~~--~g~vpi~~~~~F~kvk~l~-~d~~~i~~al~~S   61 (149)
                      |++||||||||+||++|+||+++|+.  +|||||+++++|+||++++ .|.+.|.+||+.|
T Consensus         1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S   61 (61)
T PF05383_consen    1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS   61 (61)
T ss_dssp             HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred             ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence            68999999999999999999999985  9999999999999999999 8999999999987

The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.

>KOG4213|consensus

Probab=99.89  E-value=3.8e-24  Score=155.37  Aligned_cols=129  Identities=24%  Similarity=0.309  Sum_probs=109.9

Q ss_pred             cccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCC--CcccccccccccCCC--
Q psy1630           4 TTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEEGIKVRPNH--   77 (149)
Q Consensus         4 i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~--~lev~~d~~~vrr~~--   77 (149)
                      |..||||||+|.||+||+||+.++.  .+|||||.++..|+|+.++++|.+.|+.||+.|.  .+++|+|++++||.+  
T Consensus        17 ii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~rr~~sk   96 (205)
T KOG4213|consen   17 IIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK   96 (205)
T ss_pred             hhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhhhcCcCC
Confidence            5789999999999999999999994  8999999999999999999999999999999985  589999999999764  


Q ss_pred             -------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHH
Q psy1630          78 -------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYL  136 (149)
Q Consensus        78 -------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l  136 (149)
                                   ..+++|..  |.+...++|..+-+  |.+..+.+++      .++|..||+|.+.+.|...++.-
T Consensus        97 plpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~  170 (205)
T KOG4213|consen   97 PLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH  170 (205)
T ss_pred             CCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence                         24677766  55556666666666  7778888853      47899999999999998766543

>KOG0121|consensus

Probab=99.67  E-value=1.6e-16  Score=110.50  Aligned_cols=90  Identities=21%  Similarity=0.291  Sum_probs=75.7

Q ss_pred             chhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e
Q psy1630          40 NFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A  114 (149)
Q Consensus        40 ~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~  114 (149)
                      ++.+.+.+..+.+.-.+|++.|                  +||||+||+..+++|+|.++|+++|.|+.|-|..     .
T Consensus        15 s~Yr~~~f~gt~~e~~~a~r~S------------------~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kkt   76 (153)
T KOG0121|consen   15 SAYRDRRFRGTDEEQLEALRKS------------------CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKT   76 (153)
T ss_pred             hHHHHHHhcCchHHHHHHHhhc------------------ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcC
Confidence            3445555555556666666655                  4999999999999999999999999999998853     4


Q ss_pred             ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         115 HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       115 ~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||||||.+.++|+.|++.+++  ..++.++|+
T Consensus        77 pCGFCFVeyy~~~dA~~Alryisg--trLddr~ir  109 (153)
T KOG0121|consen   77 PCGFCFVEYYSRDDAEDALRYISG--TRLDDRPIR  109 (153)
T ss_pred             ccceEEEEEecchhHHHHHHHhcc--Cccccccee
Confidence            899999999999999999999999  699999884

>PF00076 RRM_1: RNA recognition motif

Probab=99.65  E-value=1e-16  Score=100.06  Aligned_cols=66  Identities=23%  Similarity=0.359  Sum_probs=60.8

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||+++|+++|+++|++||.+..+.+..    .++|+|||+|+++++|++|++.++|  ..+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g--~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG--KKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC--CEECccCcC
Confidence            79999999999999999999999998877754    3789999999999999999999999  799999875

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.62  E-value=5.7e-16  Score=111.27  Aligned_cols=71  Identities=10%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus        32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng--~~i~Gr~l~  107 (144)
T PLN03134         32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG--KELNGRHIR  107 (144)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            4567899999999999999999999999998888754     3689999999999999999999998  689998874

>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.9e-15  Score=121.59  Aligned_cols=130  Identities=21%  Similarity=0.283  Sum_probs=112.4

Q ss_pred             cccccceeec-----cccccchhhhhhhcC----CCceeeeEEeechhhhhhhchhhhHHHHHHhhC---CCcccccccc
Q psy1630           4 TTYDLACVCC-----RENLANDAYLLSQMD----NDQYVPIWTVANFNQVKKLTKDIKLITEVLRES---PNVQVDEEGI   71 (149)
Q Consensus         4 i~~q~e~yfs-----~~Nl~~d~~l~~~~~----~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S---~~lev~~d~~   71 (149)
                      +..|+|||||     |.|..+|+|++..-.    .+|||||.++.+|++|+..+...+.+..|++.|   ..++++.+|.
T Consensus        75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgs  154 (438)
T COG5193          75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGS  154 (438)
T ss_pred             cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccc
Confidence            5679999999     999999999999864    499999999999999999999999999999999   6899999998


Q ss_pred             cccCCC------------ceeEEEeecCCCCCc--------HHHHHhhhCC--CCCCceeeeee-----eecCeeEEEEe
Q psy1630          72 KVRPNH------------KRCIVILREIPDSTP--------LEEIRGLFSG--KSCPRFISCEF-----AHNNSWYITFE  124 (149)
Q Consensus        72 ~vrr~~------------~~~tl~v~~lp~~~t--------~~~l~~~F~~--~G~v~~v~~~~-----~~kg~afVeF~  124 (149)
                      .++|..            ..+.+|+.+++...+        .+++...|..  +|.+..+++++     .++|+.|++|.
T Consensus       155 n~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk  234 (438)
T COG5193         155 NKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFK  234 (438)
T ss_pred             cccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCccccccc
Confidence            877653            246789999987544        4489999999  67788888865     37899999999


Q ss_pred             ccHHHHHHH
Q psy1630         125 NDEDAQKAY  133 (149)
Q Consensus       125 ~~e~A~~Ai  133 (149)
                      ....|+++.
T Consensus       235 ~~~~~q~~n  243 (438)
T COG5193         235 YFREAQRFN  243 (438)
T ss_pred             ChHHHHHHh
Confidence            999999875

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.55  E-value=3.5e-15  Score=93.78  Aligned_cols=66  Identities=23%  Similarity=0.375  Sum_probs=57.6

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |+|+|||+++++++|+++|+.+|.|..+.+...    ++|+|||+|.++++|++|++.+++  ..++|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~--~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNG--KEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCC--cEECCEEcC
Confidence            789999999999999999999999888877543    589999999999999999999886  799999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0107|consensus

Probab=99.53  E-value=6.7e-15  Score=107.16  Aligned_cols=69  Identities=19%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      -.+.|||+||+..++..+|+..|+.||++..|++...+.|||||||+++-||+.|+..|||  +.|-|..|
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG--~~~cG~r~   77 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDG--KDICGSRI   77 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCC--ccccCceE
Confidence            3578999999999999999999999999999999889999999999999999999999999  78888654

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.52  E-value=8.8e-15  Score=117.68  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|||.++++++|+++|++||.|..+++..     .++|||||+|++.++|.+|++.|||  ..|+||+|+
T Consensus       271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG--~~~~gr~i~  342 (352)
T TIGR01661       271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG--YTLGNRVLQ  342 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            699999999999999999999999999988854     3699999999999999999999999  799999884

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.51  E-value=1.5e-14  Score=111.94  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA--HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+.+|+++|+++|+.||.|..+.+..+  ++|||||+|+++++|+.|+. |+|  ..+.|++|+
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG--~~l~gr~V~   73 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSG--ATIVDQSVT   73 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcC--CeeCCceEE
Confidence            368999999999999999999999999999998653  68999999999999999995 888  799999873

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.50  E-value=1.9e-14  Score=115.74  Aligned_cols=70  Identities=26%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +..+|||+|||.++|+++|+++|++||+|..+++.+     .++|||||+|.++++|++|++.|||  ..+.|++|+
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~   76 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIK   76 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEE
Confidence            357899999999999999999999999998888743     3789999999999999999999999  799998873

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.48  E-value=4.2e-14  Score=114.60  Aligned_cols=71  Identities=18%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||++||+++|+++|+++|++||.|..+++..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG--~~l~gr~i~  180 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG--ITVRNKRLK  180 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC--CccCCceee
Confidence            3578999999999999999999999999998887743     3679999999999999999999998  799999875

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.45  E-value=1.6e-13  Score=111.29  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=89.4

Q ss_pred             hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630          21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI   87 (149)
Q Consensus        21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l   87 (149)
                      .-|++.+...|-| .+.++..-+  +-+.+    -.|.+....|++.-....+.....+|...      ...++|||.||
T Consensus       122 ~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nL  201 (346)
T TIGR01659       122 RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNL  201 (346)
T ss_pred             HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCC
Confidence            4456666555543 455544322  11221    25788888999876666665555555321      23568999999


Q ss_pred             CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          88 PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        88 p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      |.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.|++  ..+.|+
T Consensus       202 p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~~~g~  263 (346)
T TIGR01659       202 PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN--VIPEGG  263 (346)
T ss_pred             CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CccCCC
Confidence            99999999999999999998887754     2579999999999999999999998  577663

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0114|consensus

Probab=99.44  E-value=1.6e-13  Score=92.32  Aligned_cols=69  Identities=23%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      -.+.|||+|||.++|.|+..++|++||.|+.|++.  ...+|.|||.|++..+|.+|+++|+|  -.+.++.+
T Consensus        17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg--~n~~~ryl   87 (124)
T KOG0114|consen   17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSG--YNVDNRYL   87 (124)
T ss_pred             hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcc--cccCCceE
Confidence            35789999999999999999999999999999884  35899999999999999999999999  57777754

>smart00362 RRM_2 RNA recognition motif

Probab=99.41  E-value=1.9e-13  Score=84.15  Aligned_cols=66  Identities=20%  Similarity=0.304  Sum_probs=59.1

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +|+|+|+|..++.++|+++|+++|.+..+.+...   ++|+|||+|.+.++|++|++.+++  ..+.|++|
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~--~~~~~~~i   69 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG--TKLGGRPL   69 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC--cEECCEEE
Confidence            5899999999999999999999999888777543   479999999999999999999987  68888876

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.41  E-value=4.2e-13  Score=115.03  Aligned_cols=129  Identities=11%  Similarity=0.050  Sum_probs=93.3

Q ss_pred             chhhhhhhcCCCcee-eeEEeech--hhhhhh----chhhhHHHHHHhhCCCcccccccccccCC---------------
Q psy1630          19 NDAYLLSQMDNDQYV-PIWTVANF--NQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN---------------   76 (149)
Q Consensus        19 ~d~~l~~~~~~~g~v-pi~~~~~F--~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~---------------   76 (149)
                      ++..|++.+..-|-| .+.++..-  .+-+.+    ..+.+....|++......+.....+|++.               
T Consensus       120 tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~  199 (612)
T TIGR01645       120 REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQE  199 (612)
T ss_pred             CHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccc
Confidence            356677777666643 44443321  122222    24678888888766555554443444321               


Q ss_pred             --CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 --HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 --~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                        ...++|||+|||.++++++|+++|+.||.|..+++..     .++|||||+|++.++|.+|++.||+  .+++|+.|+
T Consensus       200 ~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg--~elgGr~Lr  277 (612)
T TIGR01645       200 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL--FDLGGQYLR  277 (612)
T ss_pred             cccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence              1236899999999999999999999999999888754     3789999999999999999999999  799999874

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.39  E-value=2.9e-13  Score=116.00  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++++++|+++|++||.|..+++..     .++|||||+|+++++|++|++.|||  ..+.||+|+
T Consensus       106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~Ik  180 (612)
T TIGR01645       106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIK  180 (612)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceee
Confidence            357899999999999999999999999999888743     3799999999999999999999998  799999874

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0125|consensus

Probab=99.38  E-value=3e-13  Score=106.78  Aligned_cols=68  Identities=18%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeee---eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISC---EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~---~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.|+|.|||...-+.||+.+|.+||.|..|.|   ++++|||+||+|++++||++|=++|+|  ..++||.|
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHg--t~VEGRkI  166 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHG--TVVEGRKI  166 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhc--ceeeceEE
Confidence            467999999999999999999999999888877   468999999999999999999999999  69999987

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.36  E-value=6.1e-13  Score=101.83  Aligned_cols=67  Identities=10%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..||+|+||++.+|+++|+++|+.||.|..|.+.+  ..+|+|||+|+++++|+.|+ .|+|  .++.|++|
T Consensus         5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnG--a~l~d~~I   73 (243)
T PLN03121          5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSG--ATIVDQRV   73 (243)
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCC--CeeCCceE
Confidence            47999999999999999999999999999999865  36789999999999999999 6888  68988876

>KOG0122|consensus

Probab=99.35  E-value=1.5e-12  Score=99.28  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630          75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLRED  139 (149)
Q Consensus        75 r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~  139 (149)
                      .+.+.+||-|.|||.++++++|+++|.+||.+..+.+.+     .++|||||.|++.++|.+||+.|||.
T Consensus       185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~  254 (270)
T KOG0122|consen  185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY  254 (270)
T ss_pred             cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence            344678999999999999999999999999998887754     38999999999999999999999984

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.34  E-value=9.8e-13  Score=110.74  Aligned_cols=70  Identities=10%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++||.|..+.+.. .+|+|||+|+++++|++|++.++.++..+.|++|+
T Consensus         2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~   71 (481)
T TIGR01649         2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAF   71 (481)
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEE
Confidence            47899999999999999999999999998887653 68999999999999999999876555789998763

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.33  E-value=1.1e-12  Score=110.51  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=63.8

Q ss_pred             ceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+ .+|+++|+++|+.||.|..+.+....+|+|||+|++.++|+.|++.|+|  ..+.|++|+
T Consensus       274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng--~~l~g~~l~  344 (481)
T TIGR01649       274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNG--VKLFGKPLR  344 (481)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CEECCceEE
Confidence            457999999998 6999999999999999998887666789999999999999999999999  699999874

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.32  E-value=1.1e-12  Score=111.97  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|||.++|+++|+++|++||.|..|++.+     .++|||||+|.+.++|++|++.+++  ..+.|++|+
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~--~~i~gk~i~   73 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF--KRLGGKPIR   73 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeeEE
Confidence            799999999999999999999999998888743     3679999999999999999999988  679999874

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0131|consensus

Probab=99.32  E-value=1.7e-12  Score=95.17  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...||||+||+..++++.|.++|-+.|+|..+++++     .++||||+||.++|+|+-|++-||.  -.+-|||||
T Consensus         8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~--VkLYgrpIr   82 (203)
T KOG0131|consen    8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM--VKLYGRPIR   82 (203)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH--HHhcCceeE
Confidence            457999999999999999999999999999999875     3799999999999999999999998  599999986

>PLN03213 repressor of silencing 3; Provisional

Probab=99.32  E-value=1.8e-12  Score=107.27  Aligned_cols=68  Identities=10%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEecc--HHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFEND--EDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~--e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      -+|||+||++.+|+++|+..|++||.|..|.+.+ ..+|||||+|.+.  .++.+||..|||  .++.||.|+
T Consensus        11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNG--AEWKGR~LK   81 (759)
T PLN03213         11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNG--CVWKGGRLR   81 (759)
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcC--CeecCceeE
Confidence            4699999999999999999999999999988864 3499999999998  689999999999  799999885

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.31  E-value=3.7e-12  Score=108.81  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|++.++|.+|+..+++  ..++|++|+
T Consensus       285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g--~~~~gk~l~  357 (562)
T TIGR01628       285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG--RMLGGKPLY  357 (562)
T ss_pred             CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC--CeeCCceeE
Confidence            46799999999999999999999999998887743    3689999999999999999999999  799999873

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0130|consensus

Probab=99.30  E-value=3.8e-12  Score=89.49  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ....+.|+|.++.+.+|+++|.+.|..||+|+.+++..+     .||||.|||++.++|++|+..+||  .++-|.+|
T Consensus        69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng--~~ll~q~v  144 (170)
T KOG0130|consen   69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG--AELLGQNV  144 (170)
T ss_pred             ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc--hhhhCCce
Confidence            346899999999999999999999999999999988532     699999999999999999999999  58888776

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.29  E-value=3.2e-12  Score=78.97  Aligned_cols=66  Identities=23%  Similarity=0.348  Sum_probs=58.5

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +|+|+|||..++.++|+++|+.+|.+..+.+...    ++|+|||+|.+.++|+.|++.+++  ..++|+.+
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~--~~~~~~~~   70 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG--KELGGRPL   70 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--CeECCeEE
Confidence            4899999999999999999999999888877553    489999999999999999999988  56888765

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.28  E-value=3.2e-12  Score=106.38  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.++|||+|||..+++++|+++|++||.|..|.+..     .++|||||+|.+.++|++|+. ++|  ..+.|++|
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i  160 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPI  160 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeee
Confidence            367999999999999999999999999998888743     368999999999999999996 777  68889876

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.28  E-value=4.8e-12  Score=106.54  Aligned_cols=68  Identities=7%  Similarity=0.071  Sum_probs=61.2

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .++|||+|||..+|+++|+++|+.||.+..+.+..     .++|||||+|++.++|+.|++.|+|  ..+.|+.|
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g--~~~~~~~l  367 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG--KDTGDNKL  367 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEECCeEE
Confidence            46899999999999999999999999988877643     2789999999999999999999999  68988875

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0148|consensus

Probab=99.27  E-value=5.7e-12  Score=97.45  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++||||+|++.-.|++.++..|+.||.|..|++ ++.+|||||.|++.|.|-+||-.+|+  .++.|..+|
T Consensus       163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv-Fk~qGYaFVrF~tkEaAahAIv~mNn--tei~G~~Vk  231 (321)
T KOG0148|consen  163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV-FKDQGYAFVRFETKEAAAHAIVQMNN--TEIGGQLVR  231 (321)
T ss_pred             CCceEEeCCcCccccHHHHHHhcccCCcceEEEE-ecccceEEEEecchhhHHHHHHHhcC--ceeCceEEE
Confidence            5799999999999999999999999999998887 55799999999999999999999999  699887654

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.26  E-value=5.7e-12  Score=95.25  Aligned_cols=69  Identities=19%  Similarity=0.302  Sum_probs=62.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|.++|+++|.+..+.+..     .++|+|||+|+++++|..|++.+++  ..|.|++|+
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~--~~~~~~~~~  188 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG--KELEGRPLR  188 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC--CeECCceeE
Confidence            38999999999999999999999999997777643     4799999999999999999999997  799999873

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.25  E-value=4.7e-12  Score=105.34  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=62.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||..+|+++|+++|++||.|..+.+..     .++|||||+|.+.++|.+|++.|+|  ..+.|++|+
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~~i~  259 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG--FELAGRPIK  259 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC--cEECCEEEE
Confidence            47899999999999999999999999998887753     3689999999999999999999999  799998874

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>smart00360 RRM RNA recognition motif

Probab=99.25  E-value=5e-12  Score=77.36  Aligned_cols=63  Identities=25%  Similarity=0.355  Sum_probs=55.4

Q ss_pred             eecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        84 v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      |+|+|..++.++|+++|+++|.+..+.+...     ++|+|||+|.+.++|.+|++.+++  ..++|+.+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~--~~~~~~~~   68 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG--KELDGRPL   68 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC--CeeCCcEE
Confidence            5789999999999999999999888877542     479999999999999999999987  68888876

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.24  E-value=5.6e-12  Score=107.77  Aligned_cols=66  Identities=26%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++|  |.|..|.+   .++||||+|++.++|++|++.||+  .+|+|++|+
T Consensus       233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG--~~i~Gr~I~  300 (578)
T TIGR01648       233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNG--KELEGSEIE  300 (578)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence            4689999999999999999999999  98877654   578999999999999999999999  799999874

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.22  E-value=1e-11  Score=106.14  Aligned_cols=68  Identities=21%  Similarity=0.289  Sum_probs=59.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~i  148 (149)
                      .++|||+|||.++++++|+++|+++|.|..+++..    .++|||||+|.++|+|++|++.||+  .++. |+.|
T Consensus        58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng--~~i~~Gr~l  130 (578)
T TIGR01648        58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNN--YEIRPGRLL  130 (578)
T ss_pred             CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCC--CeecCCccc
Confidence            58999999999999999999999999988887643    4899999999999999999999998  4664 5543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>PF13893 RRM_5: RNA recognition motif

Probab=99.21  E-value=6.2e-12  Score=75.89  Aligned_cols=52  Identities=29%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             HHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          96 IRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        96 l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |.++|++||.|..+.+....+|+|||+|++.++|++|++.|||  ..|.|++|+
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~--~~~~g~~l~   52 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNG--RQFNGRPLK   52 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTT--SEETTEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            6789999999888887554469999999999999999999999  689999874

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0113|consensus

Probab=99.20  E-value=1.7e-11  Score=95.82  Aligned_cols=69  Identities=13%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +-+||||.-|+.+++++.|+..|+.||.|+.|++..     .++|||||||+++-+...|++..+|  ..++|+.|
T Consensus       100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG--~~Idgrri  173 (335)
T KOG0113|consen  100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG--IKIDGRRI  173 (335)
T ss_pred             ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC--ceecCcEE
Confidence            568999999999999999999999999999998854     4899999999999999999999998  79998865

>KOG4207|consensus

Probab=99.18  E-value=1.9e-11  Score=91.42  Aligned_cols=70  Identities=11%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...+|.|.||-+-+|.++|+.+|++||.|-.|-|+.     .++|||||-|....||++|++.|+|  ..++|+.|.
T Consensus        12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG--~~ldgRelr   86 (256)
T KOG4207|consen   12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG--AVLDGRELR   86 (256)
T ss_pred             cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc--eeeccceee
Confidence            356899999999999999999999999999888864     4899999999999999999999999  799999873

>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.9e-12  Score=103.46  Aligned_cols=59  Identities=19%  Similarity=0.359  Sum_probs=55.7

Q ss_pred             ccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhC
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRES   61 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S   61 (149)
                      .+++|||||||-+||..|.|||++|+.+||+|+.++..|.|..++..|.+++..|++.+
T Consensus       273 a~k~QiEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~  331 (438)
T COG5193         273 AKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV  331 (438)
T ss_pred             hHHhhhHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999875

>KOG0149|consensus

Probab=99.15  E-value=2.4e-11  Score=92.20  Aligned_cols=66  Identities=14%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      -..|||+||||.++.|.|++.|++||+|....+-     .++||++||+|.+.|+|.+|++.-+   ..++||.
T Consensus        12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~---piIdGR~   82 (247)
T KOG0149|consen   12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN---PIIDGRK   82 (247)
T ss_pred             EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC---Ccccccc
Confidence            4579999999999999999999999998765442     2599999999999999999998554   4888875

>KOG0111|consensus

Probab=99.14  E-value=1.9e-11  Score=92.27  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...|||||++|...+|+.-|...|-+||.|+.|+++.     +++||+||||+..|||..|+..||+  .++-||.|+
T Consensus         8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne--sEL~Grtir   83 (298)
T KOG0111|consen    8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE--SELFGRTIR   83 (298)
T ss_pred             ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch--hhhcceeEE
Confidence            3568999999999999999999999999999999875     4899999999999999999999999  799999874

>KOG0144|consensus

Probab=99.13  E-value=4.1e-11  Score=97.69  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=76.7

Q ss_pred             hhhHHHHHHhhCCCccccccccccc-------CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCe
Q psy1630          50 DIKLITEVLRESPNVQVDEEGIKVR-------PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNS  118 (149)
Q Consensus        50 d~~~i~~al~~S~~lev~~d~~~vr-------r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~  118 (149)
                      +.+....||..-..|.---....||       |..+.+.|||+-|++.+|+.+|+++|++||.|+.+.|-+    .++||
T Consensus        88 ~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc  167 (510)
T KOG0144|consen   88 EADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC  167 (510)
T ss_pred             HHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce
Confidence            5567778888766554433333343       224567899999999999999999999999999988855    38999


Q ss_pred             eEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630         119 WYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus       119 afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      |||.|++.|-|..|++.||+. .+.+|.
T Consensus       168 aFV~fstke~A~~Aika~ng~-~tmeGc  194 (510)
T KOG0144|consen  168 AFVKFSTKEMAVAAIKALNGT-QTMEGC  194 (510)
T ss_pred             eEEEEehHHHHHHHHHhhccc-eeeccC
Confidence            999999999999999999996 666664

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.11  E-value=3.9e-11  Score=100.99  Aligned_cols=68  Identities=18%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCC------------CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKS------------CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G------------~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ..++|||+|||+.+|+++|+++|++++            .|..+.+ ...+|||||+|.+.++|..|+ .|+|  ..|.|
T Consensus       174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g--~~~~g  249 (509)
T TIGR01642       174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDS--IIYSN  249 (509)
T ss_pred             cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCC--eEeeC
Confidence            468999999999999999999999752            1222222 246899999999999999999 4888  68999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      ++|+
T Consensus       250 ~~l~  253 (509)
T TIGR01642       250 VFLK  253 (509)
T ss_pred             ceeE
Confidence            8774

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0105|consensus

Probab=99.10  E-value=3.1e-11  Score=89.07  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .++|||+|||.++-+.+|+++|.+||.|..|.+.  ...-+||||||+++-+|+.||.--+|  -.++|..|
T Consensus         6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG--Ydydg~rL   75 (241)
T KOG0105|consen    6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG--YDYDGCRL   75 (241)
T ss_pred             cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc--cccCcceE
Confidence            4789999999999999999999999998888774  35679999999999999999988777  47777544

>KOG0108|consensus

Probab=99.10  E-value=6.6e-11  Score=98.10  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++||+|+|+++++++|.++|++.|.|..+++..     .++||+|++|.++++|+.|++.|||  .++.||+|+
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg--~~~~gr~l~   91 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG--AEFNGRKLR   91 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC--cccCCceEE
Confidence            7899999999999999999999999998888743     4899999999999999999999999  799999875

>KOG0124|consensus

Probab=99.08  E-value=1e-10  Score=94.04  Aligned_cols=69  Identities=20%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .|.|||+.+.....+|.|+..|..||+|+.|+|.     ..+||||||||+-+|.|+-|++.|||  ..+.||.||
T Consensus       113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg--~mlGGRNiK  186 (544)
T KOG0124|consen  113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIK  186 (544)
T ss_pred             hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc--ccccCcccc
Confidence            5789999999999999999999999999999884     35899999999999999999999999  699999987

>smart00361 RRM_1 RNA recognition motif

Probab=99.05  E-value=9.6e-11  Score=74.00  Aligned_cols=55  Identities=31%  Similarity=0.303  Sum_probs=46.8

Q ss_pred             HHHHHhhhC----CCCCCceee-e--e-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          93 LEEIRGLFS----GKSCPRFIS-C--E-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        93 ~~~l~~~F~----~~G~v~~v~-~--~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++|+++|+    +||.+..+. +  .     ..++|+|||+|+++++|++|++.|||  +.+.||+|+
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g--~~~~gr~l~   68 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG--RYFDGRTVK   68 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            578888898    999988764 3  2     23689999999999999999999999  799999874

>KOG0127|consensus

Probab=99.04  E-value=1.7e-10  Score=96.41  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.|+|+|||+.+..++|+.+|+.||.|..|.+++    ..+|||||.|...-+|.+|++.+|+  ..+.||||
T Consensus       117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~--~~i~gR~V  188 (678)
T KOG0127|consen  117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNG--NKIDGRPV  188 (678)
T ss_pred             cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccC--ceecCcee
Confidence            67899999999999999999999999998888865    3579999999999999999999999  69999997

>KOG0117|consensus

Probab=99.03  E-value=2.8e-10  Score=93.13  Aligned_cols=69  Identities=23%  Similarity=0.283  Sum_probs=60.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh-cCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF-QNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-~g~~i  148 (149)
                      ..|-|||+.||.++.+|+|..+|++.|.|-.+++-.     +++|||||+|.+.++|++||+.||+  .+| .||.|
T Consensus        82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn--~Eir~GK~i  156 (506)
T KOG0117|consen   82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN--YEIRPGKLL  156 (506)
T ss_pred             CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC--ccccCCCEe
Confidence            367899999999999999999999999988887632     4899999999999999999999999  466 45554

>KOG0123|consensus

Probab=99.02  E-value=4.5e-10  Score=91.86  Aligned_cols=122  Identities=15%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             hhhhhhcCCCc-eeeeEEeechhhhhhh------chhhhHHHHHHhhCCCcccccccccccCC-CceeEEEeecCCCCCc
Q psy1630          21 AYLLSQMDNDQ-YVPIWTVANFNQVKKL------TKDIKLITEVLRESPNVQVDEEGIKVRPN-HKRCIVILREIPDSTP   92 (149)
Q Consensus        21 ~~l~~~~~~~g-~vpi~~~~~F~kvk~l------~~d~~~i~~al~~S~~lev~~d~~~vrr~-~~~~tl~v~~lp~~~t   92 (149)
                      .-|....++-| .|++.+-... .  +|      -.++.+..+|+..-+.=.++....+|-.. .+...+||.|||++++
T Consensus        13 ~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~   89 (369)
T KOG0123|consen   13 AMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESID   89 (369)
T ss_pred             HHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccC
Confidence            33445555444 4566666555 3  44      24788999999987766665444333211 1234499999999999


Q ss_pred             HHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          93 LEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        93 ~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ...|.++|+.||+|..+.+..   +++|+ ||+|+++++|++|++.+||  .-+.|++|
T Consensus        90 ~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng--~ll~~kki  145 (369)
T KOG0123|consen   90 NKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNG--MLLNGKKI  145 (369)
T ss_pred             cHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcC--cccCCCee
Confidence            999999999999887776643   58999 9999999999999999999  68888765

>KOG0145|consensus

Probab=99.01  E-value=1.5e-10  Score=89.50  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=92.7

Q ss_pred             hhhhhhcCCC----ceeeeEEeechhhhhhh------------chhhhHHHHHHhhCCCcccccccccc---cCCC---c
Q psy1630          21 AYLLSQMDND----QYVPIWTVANFNQVKKL------------TKDIKLITEVLRESPNVQVDEEGIKV---RPNH---K   78 (149)
Q Consensus        21 ~~l~~~~~~~----g~vpi~~~~~F~kvk~l------------~~d~~~i~~al~~S~~lev~~d~~~v---rr~~---~   78 (149)
                      .||-+.|..|    -|-+|.-+.+++-++.-            -.++++.++|+..-..|.++..-.+|   ||..   +
T Consensus        47 NYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik  126 (360)
T KOG0145|consen   47 NYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIK  126 (360)
T ss_pred             eecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhc
Confidence            5677777632    34567777788766542            13678999999999999998777776   4432   4


Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLRED  139 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~  139 (149)
                      ...+||.+||...|..+|+.+|++||.|..-++-     .-++|.+||.|+..++|+.||+.|||.
T Consensus       127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~  192 (360)
T KOG0145|consen  127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ  192 (360)
T ss_pred             ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence            5689999999999999999999999975543331     238999999999999999999999984

>KOG0117|consensus

Probab=99.00  E-value=2.1e-10  Score=93.82  Aligned_cols=64  Identities=20%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..|||+||+.++|+|.|+++|++||.|..|..   .+.||||-|.+.++|-+|++.+|+  ++++|.+|
T Consensus       260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk---~rDYaFVHf~eR~davkAm~~~ng--keldG~~i  323 (506)
T KOG0117|consen  260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKK---PRDYAFVHFAEREDAVKAMKETNG--KELDGSPI  323 (506)
T ss_pred             eeeeeeccchhhhHHHHHHHHHhccceEEeec---ccceeEEeecchHHHHHHHHHhcC--ceecCceE
Confidence            46999999999999999999999999887754   466999999999999999999999  79999876

>KOG0126|consensus

Probab=98.99  E-value=2.2e-11  Score=89.46  Aligned_cols=70  Identities=11%  Similarity=0.092  Sum_probs=63.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +..=|||+|||.+.|+.+|-..||+||+|..|.+-+     .++||||.-|+++-+..-|+..|||  -.+.||.|+
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG--iki~gRtir  108 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG--IKILGRTIR  108 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC--ceecceeEE
Confidence            345699999999999999999999999999888754     4899999999999999999999999  589999875

>KOG2590|consensus

Probab=98.97  E-value=1.3e-10  Score=96.28  Aligned_cols=64  Identities=28%  Similarity=0.450  Sum_probs=57.8

Q ss_pred             CcccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccc
Q psy1630           1 MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEE   69 (149)
Q Consensus         1 ~~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d   69 (149)
                      |..+.+|||||||.+||++|.|++++     |+||++|.+|+||..++.|+++|.+||+.+..+++..+
T Consensus       301 ~~~~~~~ie~~FSeE~~~~d~~n~~k-----~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d  364 (448)
T KOG2590|consen  301 IAFIQEPIEFYFSEENLQRDRFNREK-----FVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD  364 (448)
T ss_pred             ccccccccccccchHHHhhhhhhhcc-----cchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence            34688999999999999999999875     57799999999999999999999999999998887654

>KOG0144|consensus

Probab=98.97  E-value=6.4e-10  Score=90.81  Aligned_cols=65  Identities=14%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      -.+||+.+|..++|.+|+++|++||.|-.|.+.+     .++|||||.|.+.++|.+|+.+|++. ++|-|
T Consensus        35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~-ktlpG  104 (510)
T KOG0144|consen   35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQ-KTLPG  104 (510)
T ss_pred             hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcc-cccCC
Confidence            3499999999999999999999999998887744     38999999999999999999999985 77766

>KOG4212|consensus

Probab=98.95  E-value=9e-10  Score=90.25  Aligned_cols=70  Identities=19%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCC-CCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSG-KSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~-~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..|++||.|+|+++.+++|+++|.+ .|+|.+|.+-.    +++|||.|||+++|.+++|++.||.  -++.||+|+
T Consensus        43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~  117 (608)
T KOG4212|consen   43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELV  117 (608)
T ss_pred             ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEE
Confidence            3578999999999999999999985 68999998743    5899999999999999999999999  699999974

>KOG0127|consensus

Probab=98.88  E-value=2.7e-09  Score=89.39  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYL  136 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l  136 (149)
                      ..||||+|||+++|+++|.+.|++||++.++.+-.     .++|+|||.|.++.+|++||...
T Consensus       292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A  354 (678)
T KOG0127|consen  292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA  354 (678)
T ss_pred             cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence            47999999999999999999999999999988743     38999999999999999999876

>KOG0145|consensus

Probab=98.87  E-value=2.1e-09  Score=83.13  Aligned_cols=70  Identities=21%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+..+.|.-||...|+|+++.+|+.+|+|+...+-+     .+-||+||.|-+++||++|+..|||  ..++.+.||
T Consensus        40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK  114 (360)
T KOG0145|consen   40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK  114 (360)
T ss_pred             ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence            456799999999999999999999999999887754     3679999999999999999999999  788888876

>KOG4660|consensus

Probab=98.87  E-value=2.6e-09  Score=89.37  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|.|-|||..++.++|+.+|+.||+|+-|++.....|.+||+|-+.-+|+.|++.|++  .++.|+.||
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~--~~~~~~~~k  143 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNR--REIAGKRIK  143 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHH--HHhhhhhhc
Confidence            4689999999999999999999999999999998888899999999999999999999999  799999875

>KOG0148|consensus

Probab=98.86  E-value=2.3e-09  Score=83.16  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      -++|+.|...++-+.|++.|.+||+|...++-+     ++|||+||.|-+.++|++||..|||  +=+.+|.|+
T Consensus        64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG--qWlG~R~IR  135 (321)
T KOG0148|consen   64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG--QWLGRRTIR  135 (321)
T ss_pred             eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC--eeeccceee
Confidence            499999999999999999999999988777644     4899999999999999999999999  567777764

>KOG4206|consensus

Probab=98.79  E-value=6.7e-09  Score=78.52  Aligned_cols=68  Identities=21%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             eEEEeecCCCCCcHHHHHh----hhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRG----LFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~----~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .||||.||+..+..++|+.    +|++||.|..|.+-  .+.+|-|||.|.+.+.|..|+..|+|  --|-|++++
T Consensus        10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~g--fpFygK~mr   83 (221)
T KOG4206|consen   10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQG--FPFYGKPMR   83 (221)
T ss_pred             ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcC--CcccCchhh
Confidence            4999999999999999988    99999988887763  36899999999999999999999999  689998864

>KOG4212|consensus

Probab=98.77  E-value=5.5e-09  Score=85.73  Aligned_cols=68  Identities=19%  Similarity=0.334  Sum_probs=61.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee--eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC--EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~--~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.|+|+|+|||.+.|+..|++-|.+||.|.+..|  +-.++|  .|.|.++++|+.|+..|++  ..++||.|+
T Consensus       535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mng--s~l~Gr~I~  604 (608)
T KOG4212|consen  535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNG--SRLDGRNIK  604 (608)
T ss_pred             cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhcc--CcccCceee
Confidence            5689999999999999999999999999998877  334666  8999999999999999999  799999985

>KOG0147|consensus

Probab=98.76  E-value=4.9e-09  Score=87.68  Aligned_cols=66  Identities=23%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +||+||..+.+++.++.+|+.||.|..|.+..     .++||+||+|.+.++|.+|+..|||  -++.||+||
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--felAGr~ik  351 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FELAGRLIK  351 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--ceecCceEE
Confidence            99999999999999999999999999988754     3799999999999999999999999  799999985

>KOG0153|consensus

Probab=98.67  E-value=1.6e-08  Score=80.79  Aligned_cols=68  Identities=18%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      -.||||++|...+++.+|++.|-+||+++.+++.. .+++|||+|.+.++|+.|....-+. ..++|+.|
T Consensus       228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl  295 (377)
T KOG0153|consen  228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNK-LVINGFRL  295 (377)
T ss_pred             eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcce-eeecceEE
Confidence            57999999988999999999999999999998854 5679999999999999998877553 56677655

>KOG0132|consensus

Probab=98.65  E-value=3.1e-08  Score=85.82  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=61.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||+|++||..+++.+|..+|+.||.|..|.+- .++|||||.+....+|++|+..|++  -.+.++.||
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n--~kv~~k~Ik  488 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSN--VKVADKTIK  488 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhc--ccccceeeE
Confidence            5899999999999999999999999999888763 4899999999999999999999997  588887774

>KOG0110|consensus

Probab=98.65  E-value=1.5e-08  Score=86.87  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--e------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--A------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +++||+|+++++|.+++...|+..|.|..+.|..  +      +.|||||||.++++|+.|++.|+|  ..++|.+|
T Consensus       516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvldGH~l  590 (725)
T KOG0110|consen  516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG--TVLDGHKL  590 (725)
T ss_pred             hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC--ceecCceE
Confidence            3499999999999999999999999988877642  1      459999999999999999999998  69999876

>KOG0110|consensus

Probab=98.58  E-value=4e-08  Score=84.37  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=61.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      -..|.|+|+|..++..+|+.+|+.||.++.|+++.     .++|||||+|-++.+|.+|+.+|.+  .++-||.+
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S--THlyGRrL  685 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS--THLYGRRL  685 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc--cceechhh
Confidence            35799999999999999999999999999999864     3699999999999999999999987  68888865

>KOG0146|consensus

Probab=98.55  E-value=6.7e-08  Score=75.18  Aligned_cols=67  Identities=12%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      +.+.+||+-|...-++|+++.+|..||.+..+.+-+    .+||||||.|.+..||+.||..|+|. ++.-|
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS-qTmpG   88 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS-QTMPG   88 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc-ccCCC
Confidence            567899999999999999999999999998877744    38999999999999999999999985 55444

>KOG0109|consensus

Probab=98.53  E-value=7.7e-08  Score=75.46  Aligned_cols=67  Identities=22%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...+++|+|+....+.+++++.|.+||+|....+   -++++||-|+-.++|..|++.||+  .+|+|++++
T Consensus        77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~--~~~~gk~m~  143 (346)
T KOG0109|consen   77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDN--TEFQGKRMH  143 (346)
T ss_pred             CccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccc--cccccceee
Confidence            3467999999999999999999999998665444   678999999999999999999999  699999864

>KOG0123|consensus

Probab=98.52  E-value=9.6e-08  Score=78.23  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ...+|||.|++..++.+.|++.|+.+|++..+++..    .++||+||+|+++++|.+|+..+|+  ..+.|++|
T Consensus       269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~--~~i~~k~l  341 (369)
T KOG0123|consen  269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNG--RLIGGKPL  341 (369)
T ss_pred             cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhCh--hhhcCCch
Confidence            346899999999999999999999999998877643    4899999999999999999999999  68888876

>KOG0124|consensus

Probab=98.50  E-value=2e-07  Score=75.29  Aligned_cols=95  Identities=12%  Similarity=0.081  Sum_probs=75.5

Q ss_pred             hHHHHHHhhCCCcccccccccccCCC-----------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-
Q psy1630          52 KLITEVLRESPNVQVDEEGIKVRPNH-----------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-  113 (149)
Q Consensus        52 ~~i~~al~~S~~lev~~d~~~vrr~~-----------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-  113 (149)
                      +...-||+..+...+..-+.+|.|..                 .-..|||..+.++.++++|+..|+.||+|.+..+.+ 
T Consensus       166 EaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~  245 (544)
T KOG0124|consen  166 EAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA  245 (544)
T ss_pred             HHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc
Confidence            34556677766666666667775431                 246799999999999999999999999888776643 


Q ss_pred             ----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630         114 ----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus       114 ----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                          .++||+|+||++..+...|+..||-  -++.|.-+
T Consensus       246 pt~~~HkGyGfiEy~n~qs~~eAiasMNl--FDLGGQyL  282 (544)
T KOG0124|consen  246 PTGRGHKGYGFIEYNNLQSQSEAIASMNL--FDLGGQYL  282 (544)
T ss_pred             CCCCCccceeeEEeccccchHHHhhhcch--hhcccceE
Confidence                5899999999999999999999987  57777544

>KOG0533|consensus

Probab=98.49  E-value=1.4e-07  Score=72.91  Aligned_cols=69  Identities=13%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+|+|.|||..++.++|+++|.++|.++.+.+..    .+.|+|-|.|+..+||..|++.+++  -.++|++++
T Consensus        83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~~mk  155 (243)
T KOG0533|consen   83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGRPMK  155 (243)
T ss_pred             cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC--cccCCceee
Confidence            35799999999999999999999999888777644    3789999999999999999999999  689998874

>KOG4208|consensus

Probab=98.47  E-value=2.4e-07  Score=69.44  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCC-CCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGK-SCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~-G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .--+|+..+|..+.+.++...|.++ |.+..+++-+     .++|||||||+++|.|+=|-+.||+.  -|.|+-+
T Consensus        49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY--Ll~e~lL  122 (214)
T KOG4208|consen   49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY--LLMEHLL  122 (214)
T ss_pred             ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh--hhhhhee
Confidence            4568899999999999999999998 6677777732     48999999999999999999999994  6666543

>KOG0415|consensus

Probab=98.45  E-value=1.8e-07  Score=75.24  Aligned_cols=70  Identities=16%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ++.+.|||..|++-+|.++|.-+||.||.|....+-+     ++--+|||||++.+++++|+-.|++  --++++.|
T Consensus       237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN--vLIDDrRI  311 (479)
T KOG0415|consen  237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN--VLIDDRRI  311 (479)
T ss_pred             CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc--eeeccceE
Confidence            4678999999999999999999999999877655533     3567899999999999999999988  46777665

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=98.44  E-value=3.8e-07  Score=62.13  Aligned_cols=58  Identities=28%  Similarity=0.448  Sum_probs=39.7

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      +.|.+.|++.+++.++|++.|+++|.|.+|....+ ...|||-|.++++|++|++.+..
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~   59 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKE   59 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHH
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHh
Confidence            56889999999999999999999999999987653 44799999999999999998876

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0109|consensus

Probab=98.43  E-value=8.6e-08  Score=75.19  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|+|||..+++.+|+.+|++||.|....+   -|.++||-.|+...|+.||..|++  -+++|..|+
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhg--YtLhg~nIn   67 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHG--YTLHGVNIN   67 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhccc--ceecceEEE
Confidence            4899999999999999999999997654433   688999999999999999999999  599998774

>KOG4209|consensus

Probab=98.40  E-value=2.1e-07  Score=71.73  Aligned_cols=70  Identities=16%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.+.++|+++...+|.++++..|+.||.+..+.+..     .++|||||+|.+.+.+++|++ ||+  ..+.|+.|+
T Consensus        99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g--s~i~~~~i~  173 (231)
T KOG4209|consen   99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG--SEIPGPAIE  173 (231)
T ss_pred             cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC--cccccccce
Confidence            4677899999999999999999999999998766642     379999999999999999998 988  799998874

>KOG0116|consensus

Probab=98.33  E-value=8.3e-07  Score=73.57  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=53.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      ..+|||+|||.+++.++|++.|+.||.|+...|..     ....||||+|++.++++.|+.+-   ...++|+.
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~k  358 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRK  358 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCee
Confidence            45699999999999999999999999999877643     12389999999999999999754   13555544

>KOG0106|consensus

Probab=98.32  E-value=2.2e-07  Score=70.58  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+||++||+.+.+.+|+++|.+||.+..+.|   ..||+||+|+++-+|..|+-.+++  ++|.|-
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~--~~l~~e   63 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDG--KELCGE   63 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcC--ceecce
Confidence            4899999999999999999999998887766   568899999999999999999988  677664

>KOG4454|consensus

Probab=98.22  E-value=2.7e-07  Score=69.92  Aligned_cols=69  Identities=13%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+||+|.|+...++++-|.|+|-+.|+|..|.++.    ..| ||||+|+++....-|++.+||  -.+.|++|+
T Consensus         8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng--~~l~~~e~q   80 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENG--DDLEEDEEQ   80 (267)
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhccc--chhccchhh
Confidence            358999999999999999999999999988777754    245 999999999999999999999  477777763

>KOG4211|consensus

Probab=98.19  E-value=3.6e-06  Score=70.06  Aligned_cols=56  Identities=29%  Similarity=0.337  Sum_probs=45.8

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHH
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLR  137 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~  137 (149)
                      -|-+++|||++|+++|.++|+.++. ..+.+.+   ++.|=|||||+++|++++|++.-+
T Consensus        12 ~vr~rGLPwsat~~ei~~Ff~~~~I-~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR   70 (510)
T KOG4211|consen   12 EVRLRGLPWSATEKEILDFFSNCGI-ENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDR   70 (510)
T ss_pred             EEEecCCCccccHHHHHHHHhcCce-eEEEEeccCCCcCcceEEEeechHHHHHHHHhhH
Confidence            4668999999999999999999973 3333332   478999999999999999997543

>KOG4205|consensus

Probab=98.14  E-value=1e-06  Score=70.58  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=55.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.+.++|++|+|++++|.|++.|+++|++....+-+     .++||+||+|++++....++..-.   .+++|+.|
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~---h~~dgr~v   77 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART---HKLDGRSV   77 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc---cccCCccc
Confidence            457899999999999999999999999877655422     478999999999998888774322   47888765

>KOG0131|consensus

Probab=98.14  E-value=2.2e-06  Score=63.30  Aligned_cols=97  Identities=9%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             hhhHHHHHHhhCCCcccccccccccCCC-------ceeEEEeecCCCCCcHHHHHhhhCCCCCCce----eeee--eeec
Q psy1630          50 DIKLITEVLRESPNVQVDEEGIKVRPNH-------KRCIVILREIPDSTPLEEIRGLFSGKSCPRF----ISCE--FAHN  116 (149)
Q Consensus        50 d~~~i~~al~~S~~lev~~d~~~vrr~~-------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~----v~~~--~~~k  116 (149)
                      +.++...|++--..+.+=....+|+...       -...++|+||.+.+++..|.+.|+.+|.+..    .+.+  ..++
T Consensus        60 ~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~  139 (203)
T KOG0131|consen   60 TEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPK  139 (203)
T ss_pred             chhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCC
Confidence            4556666666555554444434443221       1356999999999999999999999996332    2222  2478


Q ss_pred             CeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630         117 NSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus       117 g~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ||+||.|++.|.+.+|+..+||  +-+..++|
T Consensus       140 ~~g~i~~~sfeasd~ai~s~ng--q~l~nr~i  169 (203)
T KOG0131|consen  140 GFGFINYASFEASDAAIGSMNG--QYLCNRPI  169 (203)
T ss_pred             CCeEEechhHHHHHHHHHHhcc--chhcCCce
Confidence            9999999999999999999999  56666665

>KOG0146|consensus

Probab=98.12  E-value=3.5e-06  Score=65.75  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee--ee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC--EF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~--~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ++.|.|||--||......+|..+|-.||.|....+  .+   .+|-|+||.|+++.+|+.||..|||-  .+.=+.+
T Consensus       283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF--QIGMKRL  357 (371)
T KOG0146|consen  283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF--QIGMKRL  357 (371)
T ss_pred             CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcch--hhhhhhh
Confidence            46799999999999999999999999998765443  22   48999999999999999999999994  5544443

>KOG1457|consensus

Probab=98.04  E-value=9.8e-06  Score=61.78  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCce--eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRF--ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      -||+||.|||.++..-+|..+|..|---+-  +++..    ..+.+|||+|.+..+|+.|..+|||  -.|+
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG--vrFD  103 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG--VRFD  103 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC--eeec
Confidence            359999999999999999999998743222  22221    2457999999999999999999998  4554

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=98.04  E-value=1.2e-05  Score=53.95  Aligned_cols=64  Identities=16%  Similarity=0.327  Sum_probs=49.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      ++||.++|+|...|.+.|.+++.+.  |..-.+-++.     ...|||||.|.+++.|.+-.+.++|  ..+.
T Consensus         1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g--~~w~   71 (97)
T PF04059_consen    1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG--KKWP   71 (97)
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC--Cccc
Confidence            4689999999999999999988764  3333333332     2679999999999999998888877  4553

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG4661|consensus

Probab=97.98  E-value=9.5e-06  Score=69.01  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee---e--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE---F--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~---~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.+.|.+|...+-..+|+.+|++||.|.-..+.   +  ..+-|+||++.+.++|.+||.+|+.  .++.||-|
T Consensus       405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr--TELHGrmI  477 (940)
T KOG4661|consen  405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR--TELHGRMI  477 (940)
T ss_pred             ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh--hhhcceee
Confidence            4789999999999999999999999987544332   1  3677999999999999999999998  69999866

>KOG1548|consensus

Probab=97.98  E-value=6.9e-06  Score=65.88  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCcee-e-----eee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFI-S-----CEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v-~-----~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      +..|||.|||.++|.+++.++|++||.|..- +     +.+      ..||=|.+.|-..|+.+-|++.|++  ..|.|+
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe--~~~rg~  211 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE--DELRGK  211 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc--ccccCc
Confidence            3459999999999999999999999964321 1     111      3789999999999999999999999  599998


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      .|+
T Consensus       212 ~~r  214 (382)
T KOG1548|consen  212 KLR  214 (382)
T ss_pred             EEE
Confidence            763

>KOG4205|consensus

Probab=97.94  E-value=7e-06  Score=65.77  Aligned_cols=68  Identities=13%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .-..++|+++|.+++++++++.|.++|.|..+-+..     +.+||+||+|++++++.+++.   ....+|.|+.+
T Consensus        96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~---~~f~~~~gk~v  168 (311)
T KOG4205|consen   96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL---QKFHDFNGKKV  168 (311)
T ss_pred             ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc---cceeeecCcee
Confidence            345799999999999999999999999776655432     489999999999999998863   22246666543

>KOG0106|consensus

Probab=97.88  E-value=6.8e-06  Score=62.52  Aligned_cols=67  Identities=15%  Similarity=0.346  Sum_probs=58.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+.+.|.+++..+.+.+|.+.|.++|.+.+..+   ..+++||+|+++++|.+|+..+++  +++.|+.|.
T Consensus        98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~--~~~~~~~l~  164 (216)
T KOG0106|consen   98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG--KKLNGRRIS  164 (216)
T ss_pred             ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc--hhhcCceee
Confidence            4677899999999999999999999998855443   568999999999999999999999  799998763

>KOG4211|consensus

Probab=97.85  E-value=9e-05  Score=61.92  Aligned_cols=90  Identities=24%  Similarity=0.290  Sum_probs=63.0

Q ss_pred             hhhhHHHHHHhhC------CCccccccc----c-cccCC---C--ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eee
Q psy1630          49 KDIKLITEVLRES------PNVQVDEEG----I-KVRPN---H--KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISC  111 (149)
Q Consensus        49 ~d~~~i~~al~~S------~~lev~~d~----~-~vrr~---~--~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~  111 (149)
                      .+.+++..||+..      .-|||=.-+    . ..++-   .  ..-.|-+++||+.+|+++|.++|+..-.|.. +-+
T Consensus        57 ~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l  136 (510)
T KOG4211|consen   57 TSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL  136 (510)
T ss_pred             echHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceee
Confidence            3578889999864      346663321    1 12222   1  3557899999999999999999998654443 212


Q ss_pred             ----eeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630         112 ----EFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus       112 ----~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                          +.++.|=|||.|+++|.|++|+..-+.
T Consensus       137 ~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre  167 (510)
T KOG4211|consen  137 PMDQRGRPTGEAFVQFESQESAEIALGRHRE  167 (510)
T ss_pred             eccCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence                124789999999999999999865443

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=97.85  E-value=4.9e-05  Score=49.56  Aligned_cols=63  Identities=16%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             eEEEeecCCCCCcHHHH----HhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          80 CIVILREIPDSTPLEEI----RGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l----~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..|+|.|||.+.+...|    +.++..||- +.+.+   +.|.|.|-|.+++.|++|.+.|+|  .+.-|+.|
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v---~~~tAilrF~~~~~A~RA~KRmeg--EdVfG~kI   69 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSV---SGGTAILRFPNQEFAERAQKRMEG--EDVFGNKI   69 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE-----TT-EEEEESSHHHHHHHHHHHTT----SSSS--
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEE---eCCEEEEEeCCHHHHHHHHHhhcc--cccccceE
Confidence            46899999999887665    456668874 22333   579999999999999999999998  46667665

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.81  E-value=2.2e-05  Score=46.89  Aligned_cols=52  Identities=21%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY  133 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai  133 (149)
                      +.|-|.|+|.+. .+.+...|+.||+|..+..+ ....+.||.|+++.+|++|+
T Consensus         2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence            468899999764 46677799999988776664 25778999999999999985

>KOG1995|consensus

Probab=97.81  E-value=1.6e-05  Score=63.91  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee--------ee-----eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI--------SC-----EFAHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v--------~~-----~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      ...||||+++|..++++.+.++|.+||.++.-        .+     ...+||-|.|.|+++-.|+.|+.++++  +.|.
T Consensus        65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag--kdf~  142 (351)
T KOG1995|consen   65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG--KDFC  142 (351)
T ss_pred             ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc--cccc
Confidence            45689999999999999999999999965421        11     124899999999999999999999999  7999


Q ss_pred             CccCC
Q psy1630         145 NKESK  149 (149)
Q Consensus       145 g~~ik  149 (149)
                      |.+||
T Consensus       143 gn~ik  147 (351)
T KOG1995|consen  143 GNTIK  147 (351)
T ss_pred             CCCch
Confidence            98875

>KOG0151|consensus

Probab=97.80  E-value=2.1e-05  Score=68.24  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--------eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--------FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...+||+|+++.++++.|-..|+.||++..+.+-        +....|+||-|-+..||+.|++.|+|  ..+.+.++|
T Consensus       174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg--~iv~~~e~K  250 (877)
T KOG0151|consen  174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG--IIVMEYEMK  250 (877)
T ss_pred             ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc--eeeeeeeee
Confidence            3579999999999999999999999999888762        23678999999999999999999998  576666553

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.66  E-value=4.8e-05  Score=61.20  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             ceeEEEeecCCCCCcHHH----H--HhhhCCCCCCceeeeeee------ecCe--eEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          78 KRCIVILREIPDSTPLEE----I--RGLFSGKSCPRFISCEFA------HNNS--WYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~----l--~~~F~~~G~v~~v~~~~~------~kg~--afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      ..+-+||-++|+.+..|+    |  .++|++||.|.-|-+.++      ..+.  .||+|.+.|||..||...+|  .-+
T Consensus       113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg--s~~  190 (480)
T COG5175         113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG--SLL  190 (480)
T ss_pred             ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc--ccc
Confidence            345799999998876666    2  379999998877666432      2333  49999999999999999999  689


Q ss_pred             cCccCC
Q psy1630         144 QNKESK  149 (149)
Q Consensus       144 ~g~~ik  149 (149)
                      +||-||
T Consensus       191 DGr~lk  196 (480)
T COG5175         191 DGRVLK  196 (480)
T ss_pred             cCceEe
Confidence            998775

>KOG1457|consensus

Probab=97.54  E-value=4.9e-05  Score=58.04  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLRED  139 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~  139 (149)
                      .|+||-||..++|+|+|+.+|+.|---..++++- .-...||++|++.+.|..|+..|.|+
T Consensus       211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~  271 (284)
T KOG1457|consen  211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN  271 (284)
T ss_pred             hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence            3799999999999999999999997656666643 33456999999999999999888875

>KOG4307|consensus

Probab=97.42  E-value=0.00018  Score=62.52  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=55.8

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPR-FISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.|.+.|+|.+++.++|-++|..|-... .|.+++    ...|-|-|-|+++++|..|...+++  +.+..|.+
T Consensus       868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~--~~i~nr~V  939 (944)
T KOG4307|consen  868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDG--QKIRNRVV  939 (944)
T ss_pred             eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhcccc--CcccceeE
Confidence            4788999999999999999999997543 455554    3678899999999999999988888  67777665

>KOG1190|consensus

Probab=97.41  E-value=0.00026  Score=58.22  Aligned_cols=69  Identities=12%  Similarity=0.211  Sum_probs=61.3

Q ss_pred             eeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.|.|.|+.+ .+|.|.|-.+|+-||.|..|.+-...+..|.|++.+...|+-|+.+|+|  ..+.|++|+
T Consensus       297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g--~~l~gk~lr  366 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEG--HKLYGKKLR  366 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhc--ceecCceEE
Confidence            46788888864 5899999999999999999988777789999999999999999999999  688888874

>KOG0226|consensus

Probab=97.25  E-value=0.00036  Score=54.16  Aligned_cols=69  Identities=10%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .-.|+.+.|..+++.+.+...|++|-.   -+.++-.  -.++||+||.|.+++++..|+++|+|  +-.+.|+||
T Consensus       190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g--kyVgsrpik  263 (290)
T KOG0226|consen  190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG--KYVGSRPIK  263 (290)
T ss_pred             cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc--cccccchhH
Confidence            456999999999999999999998743   1222222  25899999999999999999999999  577778775

>KOG4206|consensus

Probab=97.25  E-value=0.00056  Score=52.04  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=53.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      +..++++.|+|..++.+.+..+|.+|..-+.+++-...+|.|||+|.+...|..|...+.+
T Consensus       145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~  205 (221)
T KOG4206|consen  145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQG  205 (221)
T ss_pred             CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhcc
Confidence            4578999999999999999999999987777777666789999999999998888877765

>KOG0120|consensus

Probab=97.25  E-value=0.00022  Score=60.37  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=43.8

Q ss_pred             HHHHhhhCCCCCCceeeeeee--------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          94 EEIRGLFSGKSCPRFISCEFA--------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        94 ~~l~~~F~~~G~v~~v~~~~~--------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      |+++.-+++||.|..|.+++.        ..|..||||.+.++|++|.+.|.|  ..|.||.+
T Consensus       424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G--rKF~nRtV  484 (500)
T KOG0120|consen  424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG--RKFANRTV  484 (500)
T ss_pred             HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC--ceeCCcEE
Confidence            334455578999998888653        468899999999999999999999  79999875

>KOG1190|consensus

Probab=97.24  E-value=0.0001  Score=60.47  Aligned_cols=70  Identities=16%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.+.++++++|++++++++-+++.+||.|..+.+-. -+.-||+||.+++.|-.-+.........+.|++|
T Consensus        27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~   96 (492)
T KOG1190|consen   27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPI   96 (492)
T ss_pred             CcceeEeccCCccccHHHHHHhcccccceeeeeeec-cchhhhhhhcchhhhhheeecccccCccccCcce
Confidence            567899999999999999999999999888776644 3458999999999988744444443344555544

>KOG1548|consensus

Probab=97.05  E-value=0.00054  Score=55.23  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=55.8

Q ss_pred             eeEEEeecC--CC--CCc-------HHHHHhhhCCCCCCceeee-eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          79 RCIVILREI--PD--STP-------LEEIRGLFSGKSCPRFISC-EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        79 ~~tl~v~~l--p~--~~t-------~~~l~~~F~~~G~v~~v~~-~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+||.++|+  |.  ..+       .++|++-.++||.|..|.+ .+.+.|-+-|.|.+.++|..||+.|+|  +=|+||
T Consensus       265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~G--R~fdgR  342 (382)
T KOG1548|consen  265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDG--RWFDGR  342 (382)
T ss_pred             CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcC--eeecce
Confidence            579999998  22  122       4566777889999998876 456899999999999999999999999  799998


Q ss_pred             cC
Q psy1630         147 ES  148 (149)
Q Consensus       147 ~i  148 (149)
                      .|
T Consensus       343 ql  344 (382)
T KOG1548|consen  343 QL  344 (382)
T ss_pred             EE
Confidence            76

>KOG0129|consensus

Probab=97.04  E-value=0.0011  Score=55.75  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhC-CCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFS-GKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRY  135 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~-~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~  135 (149)
                      +++||||+++|..++.++|..+|+ -||.|.++-|..+     ++|.+=|+|.+..+-.+||.+
T Consensus       369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa  432 (520)
T KOG0129|consen  369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA  432 (520)
T ss_pred             ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence            689999999999999999999999 6999999888543     799999999999999999864

>KOG0120|consensus

Probab=97.03  E-value=0.00043  Score=58.60  Aligned_cols=68  Identities=7%  Similarity=0.054  Sum_probs=58.0

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.++|++||...++++++|+.+.+|..+..++-.     -++||||.||-++.....|++.|||  ..+.|+.+
T Consensus       289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG--m~lgd~~l  361 (500)
T KOG0120|consen  289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG--MQLGDKKL  361 (500)
T ss_pred             cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch--hhhcCcee
Confidence            46799999999999999999999999877554421     3799999999999999999999999  67776654

>KOG2314|consensus

Probab=96.88  E-value=0.0012  Score=56.31  Aligned_cols=61  Identities=18%  Similarity=0.281  Sum_probs=47.4

Q ss_pred             eeEEEeecCCCC--CcHHH----HHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDS--TPLEE----IRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLRED  139 (149)
Q Consensus        79 ~~tl~v~~lp~~--~t~~~----l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~  139 (149)
                      ...|+|.|+|--  .-.+.    |..+|+++|++...-++.    +.+|+.|+||++..+|+.|++.+||.
T Consensus        58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~  128 (698)
T KOG2314|consen   58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK  128 (698)
T ss_pred             ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence            456889999853  22333    567899999766555542    58999999999999999999999983

>KOG0147|consensus

Probab=96.84  E-value=0.0015  Score=55.44  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          93 LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        93 ~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .|+|.+-.+++|.|..|.+...+-|+.||-|++.++|..|+.+|+|  .=|.||-|+
T Consensus       467 ~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhg--rWF~gr~It  521 (549)
T KOG0147|consen  467 REDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHG--RWFAGRMIT  521 (549)
T ss_pred             HHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhh--hhhccceeE
Confidence            4556666699998888888766679999999999999999999999  689998774

>KOG4210|consensus

Probab=96.79  E-value=0.00053  Score=54.52  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             eeEEE-eecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVI-LREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~-v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..+++ |.+++.+++.++|+..|..+|.+..++++.     ..+|+|||+|.+..++..|+.. ..  ..+.|+++
T Consensus       184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~--~~~~~~~~  256 (285)
T KOG4210|consen  184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT--RSIGGRPL  256 (285)
T ss_pred             cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc--CcccCccc
Confidence            34566 999999999999999999999999888853     4799999999999999998865 34  56666654

>KOG2202|consensus

Probab=96.76  E-value=0.00038  Score=53.98  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=38.7

Q ss_pred             CCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630         102 GKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus       102 ~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +||+++.+.+..    -..|-+||.|..+|+|++|++.||+  .=|.|+||
T Consensus        92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn--Rw~~G~pi  140 (260)
T KOG2202|consen   92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN--RWYNGRPI  140 (260)
T ss_pred             HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC--ccccCCcc
Confidence            799988775422    3679999999999999999999999  79999987

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=96.76  E-value=0.0053  Score=40.01  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ||--.+|...-..+|.++|+.||.|..-.+   ...+|||...+.+.|..|+..++.
T Consensus        11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen   11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             EEEEE--TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred             EEEEeCchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence            444459999999999999999997654444   568999999999999999887754

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG0105|consensus

Probab=96.70  E-value=0.0034  Score=46.92  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .-.|.|.+||.+.++++|++...+.|.|.+..+.++  |.+.|+|-..|+++-|+..|+.
T Consensus       115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~  172 (241)
T KOG0105|consen  115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDD  172 (241)
T ss_pred             ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcc
Confidence            346999999999999999999999998887766543  6889999999999999999987

>KOG0128|consensus

Probab=96.63  E-value=0.00032  Score=61.98  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ++++|+|++....++++...|+.+|.+..+++.     .+++|.||++|..+++|.+||...++
T Consensus       668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~  731 (881)
T KOG0128|consen  668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS  731 (881)
T ss_pred             HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence            578999999999999999999999998887764     35899999999999999999987776

>KOG1365|consensus

Probab=96.57  E-value=0.0068  Score=49.81  Aligned_cols=59  Identities=22%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCC-----CCceeeeee---eecCeeEEEEeccHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKS-----CPRFISCEF---AHNNSWYITFENDEDAQKAYRYLR  137 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-----~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~  137 (149)
                      .-.|..+|||.+.+..++.++|..-.     ....+-+.+   +..|-|||.|+.+++|+.|+..-+
T Consensus       161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr  227 (508)
T KOG1365|consen  161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR  227 (508)
T ss_pred             ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH
Confidence            44677889999999999999998532     222222222   478999999999999999986443

>KOG0129|consensus

Probab=96.52  E-value=0.0042  Score=52.42  Aligned_cols=57  Identities=12%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-------eeecC---eeEEEEeccHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-------FAHNN---SWYITFENDEDAQKAYRY  135 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~kg---~afVeF~~~e~A~~Ai~~  135 (149)
                      .+.|+|++||++++++.|...|..||.+..-.-.       ..++|   |+|+-|+++-..+.-+.+
T Consensus       259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a  325 (520)
T KOG0129|consen  259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA  325 (520)
T ss_pred             ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence            4679999999999999999999999975432221       13677   999999998777665543

>KOG3152|consensus

Probab=96.43  E-value=0.0012  Score=51.32  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------------ee--cC--eeEEEEeccHHHHHHHHHHHHHhhh
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------------AH--NN--SWYITFENDEDAQKAYRYLREDVRE  142 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------------~~--kg--~afVeF~~~e~A~~Ai~~l~~~~~~  142 (149)
                      -.||++++|+......|+++|+.||.|-.|-+..             +.  +-  =++|||.+.-.|......||+  ..
T Consensus        75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn--~~  152 (278)
T KOG3152|consen   75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN--TP  152 (278)
T ss_pred             eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC--Cc
Confidence            4699999999999999999999999887665521             01  11  178999999999999999998  57


Q ss_pred             hcCcc
Q psy1630         143 FQNKE  147 (149)
Q Consensus       143 ~~g~~  147 (149)
                      +.|+.
T Consensus       153 Iggkk  157 (278)
T KOG3152|consen  153 IGGKK  157 (278)
T ss_pred             cCCCC
Confidence            77764

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=96.43  E-value=0.0033  Score=42.44  Aligned_cols=64  Identities=20%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceee-e-----------eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFIS-C-----------EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~-~-----------~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+.|.|=|+|+. ....|-+.|++||.|.... +           .....+...|+|+++.+|++|+. -||  ..+.|.
T Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG--~i~~g~   81 (100)
T PF05172_consen    6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG--TIFSGS   81 (100)
T ss_dssp             CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT--EEETTC
T ss_pred             CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC--eEEcCc
Confidence            456888899998 6678888999999765442 1           11245667899999999999984 233  566653

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG1365|consensus

Probab=96.39  E-value=0.0028  Score=52.02  Aligned_cols=61  Identities=21%  Similarity=0.310  Sum_probs=50.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCC-Cce--eeeee----eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSC-PRF--ISCEF----AHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~--v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .+..|..+|||+.++.|+|-.+|+.|.. +++  |+|..    .+.|=|||+|.++|+|..|....++
T Consensus       279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk  346 (508)
T KOG1365|consen  279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHK  346 (508)
T ss_pred             CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence            3557899999999999999999999864 333  56532    4789999999999999999877666

>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []

Probab=96.22  E-value=0.0023  Score=57.73  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=44.1

Q ss_pred             CCCceeeeEEeechhhhhhhchhhhHHHHHHhh-CCCccccccccccc
Q psy1630          28 DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRE-SPNVQVDEEGIKVR   74 (149)
Q Consensus        28 ~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~-S~~lev~~d~~~vr   74 (149)
                      +.+|||.|.+|++.-.+--+..+++.|..|+.. |..++|+.||.|||
T Consensus       474 DaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIR  521 (989)
T PF09421_consen  474 DAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIR  521 (989)
T ss_pred             ccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeee
Confidence            478999999999999999999999999999986 88999999999998

This protein has been shown to interact with itself via a coiled-coil [].

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=96.10  E-value=0.016  Score=35.64  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCC----CCCceeeeeeeecCeeEEEEeccHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGK----SCPRFISCEFAHNNSWYITFENDEDAQKAYRYL  136 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~----G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l  136 (149)
                      ..|+++|+.. .+.++|+.+|..|    ++ ..|..  -.-.+|=|-|.+++.|.+|+.+|
T Consensus         6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEW--IdDtScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEW--IDDTSCNVVFKDEETAARALVAL   62 (62)
T ss_pred             ceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEE--ecCCcEEEEECCHHHHHHHHHcC
Confidence            4699999855 7889999999998    43 22221  23457889999999999998754

>KOG2416|consensus

Probab=95.53  E-value=0.0099  Score=51.19  Aligned_cols=60  Identities=10%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhC-CCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFS-GKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~-~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ..+.|||.||=...|..+|+++++ ..|.|...+|.. -|..|||.|.+.++|-....+|+|
T Consensus       443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-IKShCyV~yss~eEA~atr~Alhn  503 (718)
T KOG2416|consen  443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-IKSHCYVSYSSVEEAAATREALHN  503 (718)
T ss_pred             ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-hhcceeEecccHHHHHHHHHHHhc
Confidence            457899999999999999999999 577777777754 678899999999999999999988

>KOG1456|consensus

Probab=95.11  E-value=0.044  Score=45.02  Aligned_cols=67  Identities=7%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             eeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .+.+.|-+|... .+-|.|-.+|-.||.|..|+.-+...|.|.||+.++.+.++|+.+||+.  .+-|..
T Consensus       287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~--~lfG~k  354 (494)
T KOG1456|consen  287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI--PLFGGK  354 (494)
T ss_pred             CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC--ccccce
Confidence            356778888754 6788999999999999888765556799999999999999999999985  444443

>KOG0128|consensus

Probab=95.05  E-value=0.013  Score=52.21  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=52.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ...++|+|.|...|.+.++.++++.|.+..++..    ..++|-|+|.|.++.+|.+++...+.
T Consensus       736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~  799 (881)
T KOG0128|consen  736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV  799 (881)
T ss_pred             hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh
Confidence            4579999999999999999999999998887653    25899999999999999999876655

>KOG2068|consensus

Probab=94.76  E-value=0.019  Score=46.27  Aligned_cols=68  Identities=21%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             eEEEeecCCCCCcHHH-HH--hhhCCCCCCceeeeeee--------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          80 CIVILREIPDSTPLEE-IR--GLFSGKSCPRFISCEFA--------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~-l~--~~F~~~G~v~~v~~~~~--------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +-+||.++|.....+. |+  +.|++||.+..|.+..+        ..-.+||+|+..|+|..||...+|  ...+|+.+
T Consensus        78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g--~~~dg~~l  155 (327)
T KOG2068|consen   78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG--FVDDGRAL  155 (327)
T ss_pred             hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh--HHhhhhhh
Confidence            4588889987754444 44  58999998887766432        223499999999999999999998  57788765


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      |
T Consensus       156 k  156 (327)
T KOG2068|consen  156 K  156 (327)
T ss_pred             H
Confidence            3

>KOG4849|consensus

Probab=94.63  E-value=0.028  Score=45.76  Aligned_cols=67  Identities=7%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+-.+||+||-|.+|.++|.+....-|.-.+..|.+       .+||||.|-..+....++-++.|-.  +++.|.
T Consensus        79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~--k~iHGQ  152 (498)
T KOG4849|consen   79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT--KTIHGQ  152 (498)
T ss_pred             ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc--ceecCC
Confidence            345699999999999999998888777544444432       4899999999998888888877765  566664

>KOG2193|consensus

Probab=94.56  E-value=0.043  Score=45.79  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+|++||.+.++.++++.+|+....+-  +-.+ ...|+|||...++.-|.+|++.++|. .++.|+++
T Consensus         3 klyignL~p~~~psdl~svfg~ak~~~--~g~fl~k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~   68 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDAKIPG--SGQFLVKSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQ   68 (584)
T ss_pred             cccccccCCCCChHHHHHHhccccCCC--CcceeeecceeeccCCchhhhhhhHHhhchh-hhhcCcee
Confidence            589999999999999999998752111  1111 36799999999999999999999996 78888764

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=94.51  E-value=0.042  Score=40.70  Aligned_cols=60  Identities=20%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCC-CCCC---ceeeeee-------eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSG-KSCP---RFISCEF-------AHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~-~G~v---~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ...|.|+.||+..|++++.+..+. ++.-   .++.-..       ..-.-|||.|.+.+++..-.+.++|
T Consensus         7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g   77 (176)
T PF03467_consen    7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG   77 (176)
T ss_dssp             --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred             CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence            457999999999999999997777 4432   2332111       1223499999999998887766666

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG1456|consensus

Probab=94.27  E-value=0.13  Score=42.37  Aligned_cols=61  Identities=23%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .+.++|+.-|.|..+|+|.+.++|...+.+ .++++.     ....++.+||++.++|..|+..+|-
T Consensus       404 ~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH  469 (494)
T KOG1456|consen  404 PPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNH  469 (494)
T ss_pred             CCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccccccccceeeeehHHHHHHHHHHhcc
Confidence            367889999999999999999999998865 444431     2345679999999999999988875

>KOG1996|consensus

Probab=94.01  E-value=0.042  Score=43.82  Aligned_cols=54  Identities=19%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             HHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          93 LEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        93 ~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ++++++-.++||.|..+-+--      +-.--.||+|+..++|.+|+-.|||  +=|.||.+
T Consensus       300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG--RyFGGr~v  359 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG--RYFGGRVV  359 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC--ceecceee
Confidence            667888889999877654411      1223379999999999999999999  68888865

>KOG0112|consensus

Probab=93.75  E-value=0.11  Score=46.95  Aligned_cols=60  Identities=18%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ..+.+.+++++.+.....+...|..||.++.|..+. ...+|||.+++...|+.|+..+.|
T Consensus       454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-gq~yayi~yes~~~aq~a~~~~rg  513 (975)
T KOG0112|consen  454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-GQPYAYIQYESPPAAQAATHDMRG  513 (975)
T ss_pred             cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-CCcceeeecccCccchhhHHHHhc
Confidence            345688999999999999999999999999887755 567999999999999999999988

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=93.66  E-value=0.054  Score=38.92  Aligned_cols=65  Identities=14%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             ceeEEEeecCCC------CCc---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPD------STP---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~------~~t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.-||.|.-..+      ..+   .++|-+.|++||.+.-++.   ..+.-+|+|.+-+.|-+|+. ++|  .++.|+.|
T Consensus        26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRf---v~~~mwVTF~dg~sALaals-~dg--~~v~g~~l   99 (146)
T PF08952_consen   26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRF---VGDTMWVTFRDGQSALAALS-LDG--IQVNGRTL   99 (146)
T ss_dssp             TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEE---ETTCEEEEESSCHHHHHHHH-GCC--SEETTEEE
T ss_pred             CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEE---eCCeEEEEECccHHHHHHHc-cCC--cEECCEEE
Confidence            456777776651      122   3467788899998666544   44677899999988888874 555  68888765

; PDB: 1UFW_A 2DNR_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=93.07  E-value=0.28  Score=35.34  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             ceeEEEeecCCCCC----cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDST----PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~----t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      +-.||.|+-++.+.    +...|..-++.||+|..|..  -.+-+|.|.|++..+|=+|+.++..
T Consensus        85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--cGrqsavVvF~d~~SAC~Av~Af~s  147 (166)
T PF15023_consen   85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--CGRQSAVVVFKDITSACKAVSAFQS  147 (166)
T ss_pred             CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--cCCceEEEEehhhHHHHHHHHhhcC
Confidence            45789999887764    33345556788999888765  2456899999999999999987754

>KOG0115|consensus

Probab=92.79  E-value=0.11  Score=40.52  Aligned_cols=59  Identities=14%  Similarity=0.087  Sum_probs=49.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCce----eeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRF----ISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~----v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      ..|||.|++..++.|.+..-|+.||.+..    +..+....+=.+|+|...-.|.+|....+.
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~   94 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE   94 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence            68999999999999999999999998653    333334667789999999999999987754

>KOG4676|consensus

Probab=92.70  E-value=0.08  Score=43.74  Aligned_cols=64  Identities=14%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeee-e--e-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISC-E--F-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-~--~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .|.|.||.+.+|.|+++.+|+..|.|..+.+ +  .     ...-.|||-|.+...+..| ++|.+  ..|=|+.
T Consensus         9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtn--tvfvdra   80 (479)
T KOG4676|consen    9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTN--TVFVDRA   80 (479)
T ss_pred             eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhcc--ceeeeee
Confidence            6889999999999999999999998877655 1  1     1456799999998877554 56666  3555543

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=91.86  E-value=0.26  Score=30.64  Aligned_cols=45  Identities=13%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          90 STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        90 ~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .++.++++.-+.+|+-.   ++..+..| -||.|.+..+|+++....++
T Consensus        11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-fYIvF~~~~Ea~rC~~~~~~   55 (66)
T PF11767_consen   11 GVTVEDFKKRLRKYRWD---RIRDDRTG-FYIVFNDSKEAERCFRAEDG   55 (66)
T ss_pred             CccHHHHHHHHhcCCcc---eEEecCCE-EEEEECChHHHHHHHHhcCC
Confidence            57899999999999843   33334445 48999999999999987777

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>KOG4307|consensus

Probab=91.84  E-value=0.2  Score=44.31  Aligned_cols=55  Identities=29%  Similarity=0.414  Sum_probs=42.7

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeeeeecCeeEEEEeccHHHHHHHHH
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPR-FISCEFAHNNSWYITFENDEDAQKAYRY  135 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~~~kg~afVeF~~~e~A~~Ai~~  135 (149)
                      .|-..|||+.+..-+|+.+|+..--+. -|+|--+--|-|||-|.+-|||.-|+..
T Consensus         4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~k   59 (944)
T KOG4307|consen    4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTK   59 (944)
T ss_pred             EEEecCCcccccchHHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhh
Confidence            356789999999999999999753221 2445445678999999999999998743

>KOG4676|consensus

Probab=90.86  E-value=0.019  Score=47.33  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-ecCeeEEEEeccHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-HNNSWYITFENDEDAQKAYRYL  136 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-~kg~afVeF~~~e~A~~Ai~~l  136 (149)
                      .+|++|.+|+..+...++-+.|..+|.|.+.++.-+ ...+|-|+|........|+...
T Consensus       151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~  209 (479)
T KOG4676|consen  151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH  209 (479)
T ss_pred             HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence            479999999999999999999999999999887543 4556679999999888887654

>KOG2135|consensus

Probab=90.22  E-value=0.065  Score=45.13  Aligned_cols=68  Identities=16%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.+++-+.-.|.. -|.++|...|.+||.|..+.+.. +.-.|.|+|.+..+|-.|.. ..+  ..|+||.||
T Consensus       371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~--avlnnr~iK  439 (526)
T KOG2135|consen  371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHG--AVLNNRFIK  439 (526)
T ss_pred             ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-ccc--ceecCceeE
Confidence            3566666666655 47899999999999988877754 35679999999999988874 334  588998886

>KOG2278|consensus

Probab=87.84  E-value=0.2  Score=37.12  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=32.8

Q ss_pred             hcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCC
Q psy1630          26 QMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP   62 (149)
Q Consensus        26 ~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~   62 (149)
                      +|.+|||||+..+++.|+.+....+.++|.++.+.-.
T Consensus        28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd   64 (207)
T KOG2278|consen   28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND   64 (207)
T ss_pred             cccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence            4569999999999999999999888999999998754

>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate

Probab=87.62  E-value=0.22  Score=37.22  Aligned_cols=50  Identities=24%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccc---cccccccCC
Q psy1630          27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVD---EEGIKVRPN   76 (149)
Q Consensus        27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~---~d~~~vrr~   76 (149)
                      |+++|||+++-++...+.+....+.+.|.+.+..++.  .++.   +++.+||-.
T Consensus        27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~   81 (186)
T PF01885_consen   27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRAN   81 (186)
T ss_dssp             --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEES
T ss_pred             cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEEC
Confidence            5689999999999999988777788999999988775  4555   556777743

Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.

>KOG4285|consensus

Probab=87.20  E-value=0.85  Score=36.64  Aligned_cols=60  Identities=18%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      |-|-|+|.. ...-|-..|++||.|...... ....+-+|.|.+.-+|++|+   +.+++.|+|.
T Consensus       200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KAL---skng~ii~g~  259 (350)
T KOG4285|consen  200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKAL---SKNGTIIDGD  259 (350)
T ss_pred             EEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhh---hhcCeeeccc
Confidence            555688765 345677899999987654443 34456789999999999997   4443666664

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=87.15  E-value=2.1  Score=29.31  Aligned_cols=61  Identities=18%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCC-CCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKS-CPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      +.+-..|..++.+.|..+.+.+- .+..+++.++   .+-.+.+.|.++++|..-+...||  +.|.
T Consensus        16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNG--k~Fn   80 (110)
T PF07576_consen   16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNG--KPFN   80 (110)
T ss_pred             EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCC--CccC
Confidence            33344455566667765555543 3445666554   334689999999999998887777  5654

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=85.41  E-value=1.6  Score=27.39  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             CCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          90 STPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        90 ~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++..+|-.++...+.+..-.+..  -...|+||+-.. +.|+++++.|++  ..+.|++++
T Consensus        12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~--~~~~gk~v~   70 (74)
T PF03880_consen   12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNG--KKIKGKKVR   70 (74)
T ss_dssp             T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT----SSS----
T ss_pred             CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcC--CCCCCeeEE
Confidence            456778888777765444333321  267899999887 578899999998  699999874

; PDB: 2G0C_A 3MOJ_B.

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=84.09  E-value=0.66  Score=34.63  Aligned_cols=56  Identities=30%  Similarity=0.320  Sum_probs=37.2

Q ss_pred             cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          92 PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        92 t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..+.|+++|..++.+..... ..+-+=..|.|.+.++|..|...++..+..|.|..+
T Consensus         8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l   63 (184)
T PF04847_consen    8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRL   63 (184)
T ss_dssp             -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-
T ss_pred             hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCce
Confidence            46889999999996554432 234445789999999999999988722257777654

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG0112|consensus

Probab=83.41  E-value=0.19  Score=45.40  Aligned_cols=60  Identities=12%  Similarity=0.069  Sum_probs=52.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .+||+++|++..+++.+|+-.|..+|.+..|.+...    -.-+|||.|.+...+..|...+.+
T Consensus       372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~  435 (975)
T KOG0112|consen  372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESG  435 (975)
T ss_pred             hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcC
Confidence            579999999999999999999999999999988542    356799999999999998877765

>PRK00819 RNA 2'-phosphotransferase; Reviewed

Probab=82.56  E-value=0.65  Score=34.53  Aligned_cols=48  Identities=15%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccccccccccCC
Q psy1630          27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIKVRPN   76 (149)
Q Consensus        27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~~d~~~vrr~   76 (149)
                      |+++|||+++.++...+.+....+.+.|.+...+++.  .+++  +.+||-.
T Consensus        28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~   77 (179)
T PRK00819         28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRAR   77 (179)
T ss_pred             cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEec
Confidence            5689999999999776644334577888888888775  3444  5677744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2cqk_A	101	Solution Structure Of The La Domain Of C-Mpl Bindin		6e-24

>pdb|2CQK|A Chain A, Solution Structure Of The La Domain Of C-Mpl Binding Protein Length = 101

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
          RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G KV
Sbjct: 28 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 87
Query: 74 RPNHKRCI 81
          RP+HKRCI
Sbjct: 88 RPSHKRCI 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2cqk_A	101	C-MPL binding protein; LA domain, structural genom	5e-28
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	7e-23
1s29_A	92	LA protein; winged helix-turn-helix, autoantigen,	4e-20

>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46 Length = 101

 Score = 98.8 bits (246), Expect = 5e-28
 Identities = 48/69 (69%), Positives = 57/69 (82%)

Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
           RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G K
Sbjct: 27 SRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 86

Query: 73 VRPNHKRCI 81
          VRP+HKRCI
Sbjct: 87 VRPSHKRCI 95

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193

 Score = 88.4 bits (218), Expect = 7e-23
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 13  CRENLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI 71
              NL  D +L  Q+  D+ +VP+  +  FN++ +LT D  +I E L +S    ++    
Sbjct: 25  GDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 84

Query: 72  KVR-----------------PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFIS---- 110
           K +                  + K   V ++  P    L++I+     K     I     
Sbjct: 85  KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144

Query: 111 CEFAHNNSWYITFENDEDAQKAYRYLREDVRE 142
              A   S ++ F++ E A+K      +  +E
Sbjct: 145 LHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176

>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46 Length = 92

 Score = 78.3 bits (193), Expect = 4e-20
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 13 CRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG 70
             N+  D +L  +M  + + +V + T+  F +V  +T D+K + E +R S  + + E+G
Sbjct: 23 SDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDG 82

Query: 71 IKVR 74
          + VR
Sbjct: 83 LMVR 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	100.0
2cqk_A	101	C-MPL binding protein; LA domain, structural genom	99.97
1s29_A	92	LA protein; winged helix-turn-helix, autoantigen,	99.97
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.75
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.75
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.75
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.75
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.74
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.74
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.73
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.73
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.73
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.72
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.72
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.72
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.71
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.71
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.7
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.7
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.7
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.7
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.7
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.7
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.69
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.69
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.69
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.68
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.68
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.68
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.68
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.68
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.68
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.68
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.67
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.67
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.67
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.67
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.67
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.67
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.67
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.67
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.67
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.67
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.67
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.67
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.67
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.67
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.67
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.67
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.67
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.66
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.66
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.66
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.66
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.66
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.66
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.66
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.66
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.66
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.66
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.66
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.65
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.65
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.65
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.65
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.65
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.65
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.65
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.65
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.65
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.65
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.65
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.65
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.65
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.65
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.65
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.64
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.64
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.64
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.64
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.64
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.64
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.64
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.64
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.64
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.64
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.64
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.64
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.64
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.63
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.63
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.63
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.63
2div_A	99	TRNA selenocysteine associated protein; structural	99.63
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.63
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.63
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.63
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.63
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.63
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.63
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.63
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.63
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.63
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.63
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.63
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.62
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.62
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.62
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.62
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.62
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.62
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.62
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.61
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.61
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.61
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.61
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.61
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.6
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.6
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.6
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.6
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.6
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.6
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.6
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.6
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.6
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.6
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.6
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.59
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.59
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.59
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.59
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.59
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.58
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.58
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.58
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.58
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.58
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.58
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.58
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.57
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.57
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.57
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.57
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.57
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.57
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.57
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.57
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.35
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.57
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.57
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.56
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.56
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.56
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.56
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.56
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.56
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.56
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.56
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.56
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.56
1x5p_A	97	Negative elongation factor E; structure genomics,	99.55
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.55
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.55
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.55
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.54
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.54
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.54
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.54
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.54
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.53
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.53
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.52
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.52
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.52
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.51
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.51
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.51
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.5
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.5
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.5
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.5
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.49
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.47
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.47
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.46
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.46
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.46
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.46
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.46
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.46
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.45
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.43
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.42
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.42
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.4
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.39
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.39
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.38
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.37
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.37
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.35
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.32
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.31
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.29
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.26
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.21
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.74
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.72
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.6
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.43
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	97.78
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	97.76
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.21
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	97.01
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	96.94
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.85
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	95.6
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	94.96
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	94.03
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	93.29
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	86.05

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=100.00  E-value=7.2e-44  Score=265.91  Aligned_cols=144  Identities=22%  Similarity=0.367  Sum_probs=132.4

Q ss_pred             ccccccceeeccccccchhhhhhhcC-CCceeeeEEeechhhhhhhchhhhHHHHHHhhC--CCcccccccccccCCC--
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRES--PNVQVDEEGIKVRPNH--   77 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~-~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S--~~lev~~d~~~vrr~~--   77 (149)
                      .|++||||||||+||++|.||+++|+ ++|||||.++++|+||++|+.|.+.|..||+.|  ..+++++++.+|||.+  
T Consensus        15 ~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~   94 (193)
T 2voo_A           15 KICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK   94 (193)
T ss_dssp             HHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEEECTTS
T ss_pred             HHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEEecccC
Confidence            58899999999999999999999998 799999999999999999999999999999999  8999999999998763  


Q ss_pred             -------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630          78 -------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDV  140 (149)
Q Consensus        78 -------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~  140 (149)
                                   +.++|||+|||+++|+++|+++|++||.|..+++.+    .++|||||+|+++++|++|++.++   
T Consensus        95 p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~---  171 (193)
T 2voo_A           95 PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG---  171 (193)
T ss_dssp             CCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT---
T ss_pred             CCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC---
Confidence                         147999999999999999999999999999988864    378999999999999999997653   


Q ss_pred             hhhcCccCC
Q psy1630         141 REFQNKESK  149 (149)
Q Consensus       141 ~~~~g~~ik  149 (149)
                      ..++|++|+
T Consensus       172 ~~~~Gr~l~  180 (193)
T 2voo_A          172 QKYKETDLL  180 (193)
T ss_dssp             CEETTEECE
T ss_pred             CeECCEEEE
Confidence            489999873

>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46

Probab=99.97  E-value=1.4e-33  Score=189.11  Aligned_cols=79  Identities=61%  Similarity=0.934  Sum_probs=75.2

Q ss_pred             cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCcee
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRC   80 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~   80 (149)
                      ..|++||||||||+||++|.||+++|+++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++|+.+|||+++.+
T Consensus        16 ~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr~~~~~   94 (101)
T 2cqk_A           16 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRC   94 (101)
T ss_dssp             HHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEECCSCC
T ss_pred             HHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeeeCCCCC
Confidence            3588999999999999999999999999999999999999999999999999999999999999999999999987643

>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46

Probab=99.97  E-value=7.7e-33  Score=183.15  Aligned_cols=76  Identities=24%  Similarity=0.420  Sum_probs=72.8

Q ss_pred             cccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCC
Q psy1630           2 YLTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH   77 (149)
Q Consensus         2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~   77 (149)
                      ..|++||||||||+||++|.||+++|  +++|||||++|++|+|||+++.|.+.|.+||+.|+.|+|++||.+|||+.
T Consensus        12 ~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR~~   89 (92)
T 1s29_A           12 QKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRD   89 (92)
T ss_dssp             HHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESS
T ss_pred             HHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeCCC
Confidence            35889999999999999999999999  68999999999999999999999999999999999999999999999875

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.75  E-value=5.2e-19  Score=118.13  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|||  ..+.|++|+
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng--~~~~gr~l~   92 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG--LRLQSKTIK   92 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            356899999999999999999999999998888753     3789999999999999999999999  799999874

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=3e-19  Score=120.91  Aligned_cols=71  Identities=13%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++.+..+.||+|+
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~   85 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY   85 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            568999999999999999999999999999888765 48999999999999999999987644689999885

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=1.7e-18  Score=119.62  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++.+..+.|++|+
T Consensus        29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~  100 (119)
T 2ad9_A           29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY  100 (119)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence            3568999999999999999999999999999988865 48999999999999999999999854679999884

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.75  E-value=1.1e-18  Score=117.65  Aligned_cols=72  Identities=17%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+ ++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|++....+.||+|+
T Consensus        13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~   85 (102)
T 1x4d_A           13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR   85 (102)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence            4678999999999 999999999999999998888754 57999999999999999999999854469999874

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.74  E-value=1.6e-18  Score=116.48  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++++..+.|++|+
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~   84 (101)
T 2cq1_A           13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY   84 (101)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence            4567999999999999999999999999998887755 48999999999999999999998765679999874

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.74  E-value=3.5e-18  Score=116.93  Aligned_cols=72  Identities=17%  Similarity=0.071  Sum_probs=64.9

Q ss_pred             CceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||++ +|+++|+++|++||.|..+.+.+ .+|||||+|+++++|++|++.|++....+.||+|+
T Consensus        23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~   95 (112)
T 1x4f_A           23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK   95 (112)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred             CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            35789999999998 99999999999999999988853 68999999999999999999999864569999874

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.73  E-value=5.2e-18  Score=114.49  Aligned_cols=72  Identities=10%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++....+.|++|+
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~   84 (104)
T 1wex_A           13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF   84 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            4567999999999999999999999999998887754 58999999999999999999999854459999874

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.73  E-value=1.6e-18  Score=116.34  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|+|||+|++.++|++|++.+++....+.||+|+
T Consensus        19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~   90 (100)
T 3r27_A           19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF   90 (100)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence            3567999999999999999999999999998887753 68999999999999999999999842247899873

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=116.72  Aligned_cols=71  Identities=8%  Similarity=0.009  Sum_probs=64.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.||+  ..+.|++|+
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng--~~~~gr~i~   79 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL--TSVMGNIIH   79 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            3567999999999999999999999999999888753     3789999999999999999999999  799999874

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.72  E-value=3.9e-18  Score=113.34  Aligned_cols=72  Identities=17%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCC--ceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHh--hhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCP--RFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDV--REFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v--~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~--~~~~g~~i  148 (149)
                      .-.||||+|||+++|+++|+++|++||.+  ..|++.+     .++|||||+|+++++|++|++.||+..  ..++||+|
T Consensus         8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i   87 (95)
T 2lkz_A            8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI   87 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred             ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence            45699999999999999999999999964  4555533     378999999999999999999999831  13789887


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      +
T Consensus        88 ~   88 (95)
T 2lkz_A           88 G   88 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=1.5e-17  Score=107.14  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=63.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++++++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.||+  ..++|+.|+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~   78 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA--SGVQAQMAK   78 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH--HTCCEESCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC--CeEeeEEEe
Confidence            467999999999999999999999999998888753     3589999999999999999999999  699999875

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.72  E-value=3.3e-18  Score=116.87  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+|||+|||+++|+++|+++|++||.|..+++..   .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~--~~~~g~~i~   76 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF   76 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            35799999999999999999999999998888754   3689999999999999999999999  799999874

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.71  E-value=3.9e-18  Score=111.47  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=59.5

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+|||+|||+++|+++|+++|++||  .|..+++..     .++|||||+|+++++|++|++.|||  ..++|++|+
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g--~~~~gr~i~   76 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQNPV   76 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG--SCSSSCCCE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC--CeeCCEEEE
Confidence            5899999999999999999999999  888877743     3789999999999999999999999  799999874

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.71  E-value=5.6e-18  Score=109.02  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++++++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   80 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR   80 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            3567999999999999999999999999998888744     3799999999999999999999999  799999874

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.70  E-value=2.3e-18  Score=112.83  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=62.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...|+|+||++.+|+++|+++|++||+|..+++.. ++|||||||.++++|++|++.||+  ..+.||+|+
T Consensus         7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~--~~l~gr~I~   74 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNN--CVLANTTIF   74 (89)
T ss_dssp             CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcC--CEECCcEEE
Confidence            34699999999999999999999999999888755 899999999999999999999999  799999884

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=4.4e-18  Score=114.54  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=63.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+++..    .++|||||+|+++++|++|++ +++  ..++|++|+
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~--~~~~gr~l~   82 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPG--QKYKETDLL   82 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSC--CCCTTTTCE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCC--CEECCEEEE
Confidence            4568999999999999999999999999999888864    378999999999999999998 776  799999873

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.70  E-value=4.5e-18  Score=109.04  Aligned_cols=68  Identities=9%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             eEEEeecCCCCC------cHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc-cCC
Q psy1630          80 CIVILREIPDST------PLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNK-ESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~------t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~-~ik  149 (149)
                      ++|||+|||.++      |+++|+++|++||.|..+.+..   .++|||||+|+++++|++|++.|||  ..+.|+ +|+
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~~~l~   79 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YKLDKQHTFR   79 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS--CCCSSSSCCC
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC--cccCCceeEE
Confidence            689999999999      7899999999999988887753   4789999999999999999999999  799999 875

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.70  E-value=1e-17  Score=108.27  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+     ++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   79 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGGRQIR   79 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            45689999999999999999999999999988887542     689999999999999999999998  789999874

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=107.87  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=63.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e-ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A-HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~-~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     . ++|+|||+|+++++|++|++.|+|  ..++|++|+
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   78 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG--GQIDGQEIT   78 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC--CeECCeEEE
Confidence            357899999999999999999999999998887743     2 799999999999999999999999  799999874

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.70  E-value=4.8e-18  Score=116.01  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=64.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++|| .|..+.+. ..++|||||+|+++++|++|++.|||  ..++|++|+
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng--~~l~Gr~i~   98 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNN--IEFRGSVIT   98 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTT--EEETTEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            457899999999999999999999999 89988874 45899999999999999999999999  799999874

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.69  E-value=1.5e-17  Score=110.52  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||.++|+++|+++|++||.|..+.+..+++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   68 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG--KVICGSRVR   68 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHH--SCSSSCCCE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCC--CeECCcEEE
Confidence            48999999999999999999999999998888666899999999999999999999999  689999874

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.69  E-value=2.1e-18  Score=113.37  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||.++|+++|+++|++|| .|..+++..     .++|||||+|+++++|++|++.+++. ..++|++|+
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~   76 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVS   76 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEE
Confidence            5899999999999999999999999 788887743     47899999999999999999877542 578998873

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.69  E-value=2.3e-17  Score=112.09  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.||+  ..+.|++|+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   77 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAY--SKFHHVPLY   77 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCC--CEECCeEEE
Confidence            468999999999999999999999999988877754 789999999999999999999999  799999874

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.68  E-value=2.8e-17  Score=105.24  Aligned_cols=68  Identities=12%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+|||+|||.++|+++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++.|+|  ..+.|++|+
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~   74 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG--QDLNGRPLR   74 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC--CeeCCcEEE
Confidence            5899999999999999999999999998887753     3589999999999999999999998  689999874

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.68  E-value=1.1e-17  Score=111.60  Aligned_cols=69  Identities=10%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             eeEEEeecCCC------CCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC-c
Q psy1630          79 RCIVILREIPD------STPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN-K  146 (149)
Q Consensus        79 ~~tl~v~~lp~------~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g-~  146 (149)
                      .++|||+|||.      ++++++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|||  ..+.| +
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng--~~~~g~r   83 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG--KRLDLKH   83 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CBSSSSC
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC--cccCCCe
Confidence            57899999999      999999999999999999888753     4789999999999999999999999  79999 8


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +|+
T Consensus        84 ~l~   86 (100)
T 3ns6_A           84 RLF   86 (100)
T ss_dssp             BCE
T ss_pred             EEE
Confidence            874

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=5.4e-17  Score=107.58  Aligned_cols=70  Identities=19%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~   82 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDN--MPLRGKQLR   82 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTT--CCBTTBCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCC--CEeCCceEE
Confidence            3567999999999999999999999999999888764 589999999999999999999999  689999874

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=3.1e-17  Score=109.42  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   88 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYDHLILN   88 (103)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence            35678999999999999999999999999998888753     3689999999999999999999998  689999874

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.68  E-value=8.6e-17  Score=106.21  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+ ++|+++|+++|++||.|..+.+   ++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   76 (96)
T 2kvi_A            8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQ--EMNFGKKLI   76 (96)
T ss_dssp             -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTC--SSCBTTTBC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence            4578999999998 9999999999999999998877   589999999999999999999998  699999875

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5e-17  Score=106.65  Aligned_cols=70  Identities=17%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   78 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG--FELAGRPMR   78 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence            467999999999999999999999999988887754     2689999999999999999999999  799999874

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.68  E-value=5.2e-17  Score=107.67  Aligned_cols=71  Identities=13%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCce--------eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF--------ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--------v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..        +.+..     .++|||||+|++.++|++|++.|+|  ..+
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g--~~~   88 (99)
T 2la6_A           11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG--KEF   88 (99)
T ss_dssp             CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT--CBS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEe
Confidence            45689999999999999999999999999987        77643     3689999999999999999999999  799


Q ss_pred             cCccCC
Q psy1630         144 QNKESK  149 (149)
Q Consensus       144 ~g~~ik  149 (149)
                      +|++|+
T Consensus        89 ~g~~l~   94 (99)
T 2la6_A           89 SGNPIK   94 (99)
T ss_dssp             SSSBCE
T ss_pred             CCcEEE
Confidence            999874

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.8e-17  Score=106.07  Aligned_cols=68  Identities=18%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.   +|||||+|+++++|++|++.+++  ..+.|++|+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   73 (90)
T 2dnq_A            6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHH--YKLHGVNIN   73 (90)
T ss_dssp             SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcC--CccCCcEEE
Confidence            356899999999999999999999999998887764   89999999999999999999998  789999874

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.67  E-value=5.4e-17  Score=105.92  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..   .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~   79 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG--MKLSGREID   79 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT--CCBTTBCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            4568999999999999999999999999998887754   3689999999999999999999999  689999875

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.67  E-value=7.1e-17  Score=109.17  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.++|  ..+.|++|+
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~i~g~~l~   99 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMK   99 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            4678999999999999999999999999998888753     3689999999999999999999999  799999874

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=107.78  Aligned_cols=71  Identities=11%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++++++|+++|++||.|..+.+..    .++|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   88 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG--IRLYGRPIN   88 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC--CEECCCEEE
Confidence            4568999999999999999999999999998888754    2689999999999999999999999  689999874

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.67  E-value=4.4e-17  Score=106.92  Aligned_cols=70  Identities=19%  Similarity=0.297  Sum_probs=62.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~gr~l~   88 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGSRKVK   88 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC--CeECCcEEE
Confidence            458999999999999999999999999987665533     3789999999999999999999999  799999874

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.67  E-value=2.2e-17  Score=109.11  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+..        .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   81 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HTVDGHKLE   81 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence            457899999999999999999999999998888753        3579999999999999999999998  689998873

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.2e-17  Score=107.91  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.++|+++|+++|++||.|..+.+. .++|||||+|++.++|++|+..|++  ..++|++|+
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   94 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALAN--FPFQGRNLR   94 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTT--CEETTEECC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            45799999999999999999999999999988876 4799999999999999999999998  799999875

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.67  E-value=3.3e-17  Score=108.04  Aligned_cols=69  Identities=23%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++++++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.|+|  ..++|++|+
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   75 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG--YQLGSRFLK   75 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            47899999999999999999999999988887743     3589999999999999999999999  799998874

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=5.3e-17  Score=109.83  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..   .++|||||+|++.++|++|++.|+|  ..++|++|+
T Consensus        27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~  100 (109)
T 2err_A           27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEGRKIE  100 (109)
T ss_dssp             TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            3568999999999999999999999999999888753   3689999999999999999999999  689999874

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=3e-17  Score=109.16  Aligned_cols=71  Identities=14%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   85 (102)
T 1x5s_A           10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG--KSVDGRQIR   85 (102)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT--CCTTSCCCE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            3567999999999999999999999999999888854     2689999999999999999999999  689999874

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5.6e-17  Score=107.60  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus        15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   89 (100)
T 2do4_A           15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG--MTIKENIIK   89 (100)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--EESSSCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            4568999999999999999999999999988888754    3679999999999999999999998  799998874

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=5e-17  Score=108.39  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   86 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG--AELDGRELR   86 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS--CCBTTBCCE
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence            3568999999999999999999999999988887743     3689999999999999999999999  689999874

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=5.2e-17  Score=108.28  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..   .++|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   86 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG--RIVATKPLY   86 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            3568999999999999999999999999988888754   3789999999999999999999999  689999874

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=2.5e-17  Score=109.60  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   85 (102)
T 2cqb_A           10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR   85 (102)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            3567899999999999999999999999999888743     3789999999999999999999998  789998863

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.67  E-value=3.2e-17  Score=108.51  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   81 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQGRMLH   81 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESSSCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            568999999999999999999999999988887743     3689999999999999999999998  799998863

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.67  E-value=6.1e-17  Score=108.46  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=63.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee------ecCeeEEEEeccHHHHHHHHHH-HHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA------HNNSWYITFENDEDAQKAYRYL-REDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~------~kg~afVeF~~~e~A~~Ai~~l-~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+      ++|||||+|+++++|++|++.| ++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~~g~~l~   90 (107)
T 2cph_A           13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS--THLYGRRLV   90 (107)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC--CBSSSCBCE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC--CeECCCEEE
Confidence            45689999999999999999999999999988887443      5899999999999999999999 77  799999874

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=2.5e-17  Score=108.33  Aligned_cols=70  Identities=9%  Similarity=0.033  Sum_probs=63.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee-eeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI-SCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v-~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+ .+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   79 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG--QYLCNRPIT   79 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            46799999999999999999999999999887 7744     2689999999999999999999998  689999874

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=6e-17  Score=108.42  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   96 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLMGQPIS   96 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC--CEECCcEEE
Confidence            4578999999999999999999999999998888753     3689999999999999999999999  799999874

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.66  E-value=5.6e-17  Score=107.11  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc--CccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ--NKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~--g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+... +|||||+|+++++|++|++.|++  ..+.  |++|+
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g--~~~~~~g~~l~   86 (97)
T 1why_A           15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRG--FPLGGPDRRLR   86 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTT--CBCSSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCC--CEeCCCCcEEE
Confidence            45689999999999999999999999999888877653 89999999999999999999998  6898  88873

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=5.1e-17  Score=106.52  Aligned_cols=71  Identities=18%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   88 (95)
T 2cqc_A           13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIR   88 (95)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            4568999999999999999999999999998888753     3689999999999999999999998  799999874

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=3.1e-17  Score=108.42  Aligned_cols=71  Identities=15%  Similarity=0.070  Sum_probs=63.6

Q ss_pred             CceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeeee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEFA--HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++++++|+    ++|++||.|..+.+..+  .+|||||+|+++++|++|++.||+  ..+.|++|+
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~~gr~l~   83 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR--YKIGSKKIL   83 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            356799999999999999999    99999999988887532  389999999999999999999999  799999874

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7.2e-17  Score=106.86  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++ +++  ..+.|++|+
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~--~~~~g~~l~   82 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF--HDIMGKKVE   82 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC--CBSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC--CEECCeEEE
Confidence            3567999999999999999999999999998888743     268999999999999999998 887  799999874

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=6.9e-17  Score=107.68  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+   ++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   86 (103)
T 2cq3_A           13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEGRKIE   86 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            35689999999999999999999999999988887542   589999999999999999999998  689999874

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.66  E-value=7.4e-17  Score=108.73  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|+|  ..+.|++|+
T Consensus        24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   99 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMGQTIQ   99 (110)
T ss_dssp             TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence            4678999999999999999999999999998888743     3589999999999999999999999  699999874

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=7.6e-17  Score=108.62  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..  .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   92 (109)
T 1x4a_A           20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGYRLR   92 (109)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            3568999999999999999999999999988887743  3689999999999999999999998  689998874

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4.4e-17  Score=104.85  Aligned_cols=70  Identities=13%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHH-HHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL-REDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l-~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.| ++  ..+.|++|+
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~--~~~~g~~l~   80 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNK--LIVNGRRLN   80 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTT--CEETTEECC
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCC--eeECCCEEE
Confidence            3467899999999999999999999999988887764 6899999999999999999988 77  789999875

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.66  E-value=8.6e-17  Score=108.82  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=62.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.   +|||||+|++.++|++|++.|+|  ..++|++|+
T Consensus        29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   96 (108)
T 2jvo_A           29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHG--KSFANQPLE   96 (108)
T ss_dssp             CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            356899999999999999999999999999888775   89999999999999999999999  689999873

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.66  E-value=3.6e-17  Score=110.91  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             CceeEEEeecCCCCCcHHHHH---hhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          77 HKRCIVILREIPDSTPLEEIR---GLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~---~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ...++|||+|||+++++++|+   ++|++||.|..+.+..        .++|||||+|+++++|++|++.||+  ..++|
T Consensus        13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng--~~~~g   90 (111)
T 2cpi_A           13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN--VVVDG   90 (111)
T ss_dssp             CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC--CEECC
Confidence            356789999999999999999   9999999998888753        2458999999999999999999999  68999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      ++|+
T Consensus        91 r~l~   94 (111)
T 2cpi_A           91 RTLK   94 (111)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.65  E-value=1.5e-16  Score=107.44  Aligned_cols=67  Identities=13%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||++ +|+++|+++|++||.|..+.+   ++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   93 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENG--RVLAGQTLD   93 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTT--CEETTEECC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            4579999999999 999999999999999998877   799999999999999999999999  789999875

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.65  E-value=9.8e-17  Score=108.95  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..  .++|||||+|++.++|++|++.|+|  ..+.|++|+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   78 (115)
T 3lqv_A            6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG--FNVSNRYLV   78 (115)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT--CBSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            3467999999999999999999999999998888754  3689999999999999999999999  799999874

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=7.5e-17  Score=106.60  Aligned_cols=69  Identities=9%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|. +.+. ..++|||||+|+++++|++|++.||+  ..+.|++|+
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   87 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG--LRLGTDTLR   87 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            467999999999999999999999999986 4443 35799999999999999999999999  799999874

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.5e-17  Score=107.22  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++++++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   89 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQLFGRVIK   89 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EEETTEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence            3567899999999999999999999999988887743     3689999999999999999999998  799999873

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=5.4e-17  Score=108.22  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..   ..+|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   86 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG--RKILGKEVK   86 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC--CCcCCCeEE
Confidence            4568999999999999999999999999998888754   2689999999999999999999998  689998873

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.6e-16  Score=104.00  Aligned_cols=68  Identities=22%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.   ++||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   75 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDN--TEFQGKRMH   75 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence            456899999999999999999999999999888774   67999999999999999999999  689998763

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.65  E-value=1.1e-16  Score=107.26  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+.+|+++|+++|++||.|..+.+..    .++|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus        27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  101 (107)
T 3ulh_A           27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLDGRPMN  101 (107)
T ss_dssp             CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            4578999999999999999999999999998887754    3689999999999999999999999  799999874

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.65  E-value=1.4e-16  Score=109.80  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   95 (126)
T 3ex7_B           20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLMGQPIS   95 (126)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence            4578999999999999999999999999998887753     2589999999999999999999999  799999874

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.65  E-value=8.9e-17  Score=106.13  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=61.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~   88 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGSRKVK   88 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence            457899999999999999999999999987655432     3689999999999999999999998  699999874

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=8.9e-17  Score=107.40  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   88 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IKLYGKPIR   88 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CBCSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            3567999999999999999999999999988887743     3689999999999999999999998  689999874

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.65  E-value=9.1e-17  Score=109.58  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.||+  ..++|++|+
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~  113 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQVGTKRLK  113 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CEETTEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            568999999999999999999999999988887743     3689999999999999999999998  789999885

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.65  E-value=6.5e-17  Score=110.44  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..+  |||||+|+++++|++|++.||+  .+++|++|
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g--~~~~gr~~   81 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDN--TKFRSHEG   81 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTT--CBCCCTTS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCC--CEECCcEe
Confidence            3578999999999999999999999999888877544  9999999999999999999999  79999884

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.65  E-value=1.5e-16  Score=106.33  Aligned_cols=71  Identities=11%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC---ccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQN---KESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g---~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+    ++|||||+|++.++|++|++.|++  ..+.|   ++|+
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~gg~~~~l~   90 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG--SQTMPGASSSLV   90 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS--CCCCTTCSSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC--CccCCCCCccEE
Confidence            45689999999999999999999999999888887542    589999999999999999999998  68887   7763

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.65  E-value=8.6e-17  Score=110.05  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g~~l~   79 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG--KSLHGKAIK   79 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            457999999999999999999999999999888754    2679999999999999999999998  799999874

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.65  E-value=4.7e-17  Score=105.48  Aligned_cols=68  Identities=18%  Similarity=0.261  Sum_probs=61.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+.+..+     ++|+|||+|+++++|++|+ .+++  ..+.|++|+
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g--~~~~g~~l~   78 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE--SLFRGRQIK   78 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT--CEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC--CEECCcEEE
Confidence            578999999999999999999999999988887542     5899999999999999999 8988  689999874

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.64  E-value=1.4e-16  Score=106.67  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=63.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh---cCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF---QNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~---~g~~i  148 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+   .|++|
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l   88 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE--QKTLPGMNRPI   88 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT--TCCCTTCSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC--CcccCCCCceE
Confidence            4568999999999999999999999999999988754     2689999999999999999999998  576   77876


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      +
T Consensus        89 ~   89 (106)
T 2dgp_A           89 Q   89 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=6.1e-17  Score=107.92  Aligned_cols=70  Identities=20%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.+++  ..+.|++|+
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   81 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSGRALR   81 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSSSCBE
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence            357899999999999999999999999999888754     2589999999999999999999998  799999874

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.64  E-value=9e-17  Score=106.61  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             ceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||. ++++++|+++|++||.|..+.+   .+|||||+|++.++|++|++.++|  ..+.|++|+
T Consensus        21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   88 (97)
T 2xnq_A           21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQ--EMNFGKKLI   88 (97)
T ss_dssp             TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTT--SEETTEECE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            568999999998 9999999999999999888776   589999999999999999999998  689998874

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.64  E-value=7.2e-17  Score=104.98  Aligned_cols=68  Identities=16%  Similarity=0.353  Sum_probs=62.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++| .|..+.+. .++|||||+|+++++|++|++.+++  ..+.|++|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~   71 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKDLI   71 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCC--CeECCcEEE
Confidence            35789999999999999999999999 88888775 6899999999999999999999998  799999874

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=8.1e-17  Score=101.66  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||.++|+++|+++|+++|.|..+.+..     .++|+|||+|+++++|++|++.++   ..++|++|+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~   72 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTID   72 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCCE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEEE
Confidence            4799999999999999999999999999888754     258999999999999999999887   489999874

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.64  E-value=8.2e-17  Score=109.43  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   98 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIGMKRLK   98 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            457999999999999999999999999999888754     3679999999999999999999998  789999874

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.64  E-value=8.1e-17  Score=109.37  Aligned_cols=71  Identities=13%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+     ++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   88 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGGRQIR   88 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CEETTEECE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            46789999999999999999999999999988887542     589999999999999999999998  689998874

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=1.5e-16  Score=107.70  Aligned_cols=71  Identities=15%  Similarity=0.343  Sum_probs=62.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCc--------eeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPR--------FISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~--------~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      .+.++|||+|||.++|+++|+++|++||.|.        .+.+..     .++|||||+|+++++|++|++.|++  ..+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~   90 (113)
T 2cpe_A           13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG--KDF   90 (113)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT--CEE
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC--Ccc
Confidence            3568999999999999999999999999988        466643     3689999999999999999999999  689


Q ss_pred             cCccCC
Q psy1630         144 QNKESK  149 (149)
Q Consensus       144 ~g~~ik  149 (149)
                      .|++|+
T Consensus        91 ~g~~l~   96 (113)
T 2cpe_A           91 QGSKLK   96 (113)
T ss_dssp             TTEECE
T ss_pred             CCCEEE
Confidence            999874

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.64  E-value=5.4e-17  Score=115.23  Aligned_cols=70  Identities=19%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+++..+++|||||+|+++++|++|++.|+|  ..+.|++|+
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  141 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG--RTLCGCRVR  141 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSS--SCSSSSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence            5689999999999999999999999999998888777899999999999999999999999  689999874

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=9.7e-17  Score=107.04  Aligned_cols=70  Identities=7%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCC-CCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhh-hcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSG-KSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVRE-FQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~-~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++ ||.|..+.+..+    ++|||||+|+++++|++|++.|++  .. +.|++|+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~g~~l~   83 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG--AVGLGSKPVR   83 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT--CCSSSSSCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC--CcccCCEeEE
Confidence            4578999999999999999999999 999988887543    789999999999999999999998  67 9999874

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=6.3e-17  Score=109.12  Aligned_cols=70  Identities=19%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||+|||.++|+++|+++|++||.|..+.+..+ +|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   92 (109)
T 1x4g_A           23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNG--TTIEGHVVK   92 (109)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence            45689999999999999999999999999888877654 89999999999999999999998  799999874

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.64  E-value=2.3e-16  Score=108.65  Aligned_cols=70  Identities=13%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++++++|+++|++||.|..+.+..+    ++|||||+|++.++|++|++.+++  ..++|++|+
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~  107 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPLDGRPMD  107 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT--EESSSCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence            5689999999999999999999999999998888542    689999999999999999999999  699999874

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.64  E-value=5.4e-17  Score=109.03  Aligned_cols=69  Identities=9%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             eeEEEeecCCCCC------cHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc-cC
Q psy1630          79 RCIVILREIPDST------PLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNK-ES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~------t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~-~i  148 (149)
                      .++|||+|||+.+      |+++|+++|++||.|..+.+..   .++|||||+|+++++|++|++.|||  ..+.|+ +|
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~l   92 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YKLDKQHTF   92 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS--EECSTTCEE
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC--cccCCCceE
Confidence            5799999999999      7899999999999998887753   3689999999999999999999999  799998 76


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      +
T Consensus        93 ~   93 (105)
T 2nlw_A           93 R   93 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=7.1e-17  Score=108.86  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ...++|||+|||+++|+++|+++|++||.|..+.+..+  |||||+|+++++|++|++.||+  ..+.|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g--~~~~g   77 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDN--TKFRS   77 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSS--EEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCc--CCccC
Confidence            35689999999999999999999999999888877554  9999999999999999999998  78998

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.63  E-value=6.8e-17  Score=101.74  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=59.3

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++ +++  ..++|++|+
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~--~~~~g~~l~   71 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF--HEINNKMVE   71 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC--CCSSSCCCE
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC--CEECCEEEE
Confidence            489999999999999999999999999888754     258999999999999999997 777  799999874

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.63  E-value=6.8e-17  Score=105.13  Aligned_cols=67  Identities=12%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||.++++++|+++|++||.|..+.+..     .++|||||+|++++ |++|++.|+|  ..++|++|+
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g--~~~~g~~l~   73 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN--TDFMGRTIR   73 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS--SCCSSSSCS
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC--CEECCeEEE
Confidence            6899999999999999999999999999888753     36899999999999 9999999998  789999885

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.8e-16  Score=105.88  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++|| |..+.+..      .++|||||+|+++++|++|+ .|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~   87 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESLGNKRIR   87 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC--CEeCCcEEE
Confidence            4678999999999999999999999999 88887743      35899999999999999999 8988  689998874

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-16  Score=105.83  Aligned_cols=68  Identities=7%  Similarity=0.056  Sum_probs=62.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPR-FISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      +.++|||+|||+++|+++|+++|++||.|. .+.+..     .++|||||+|+++++|++|++.||+  ..+.|++
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~   81 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPLPGAT   81 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEESSCS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--CccCCCC
Confidence            457999999999999999999999999988 887743     3679999999999999999999998  7999998

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.63  E-value=6.8e-17  Score=112.68  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=62.7

Q ss_pred             CceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+.+++++|+    ++|++||.|..|.+..  .++|||||+|++.++|++|++.|||  ..+.|++|+
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng--~~l~gr~l~  103 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG--YPFQGNPLV  103 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT--CCCTTSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC--CEeCCCEEE
Confidence            346799999999999999876    6999999988777643  4799999999999999999999999  799999884

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=1.1e-16  Score=107.81  Aligned_cols=71  Identities=13%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHH------HHhhhhcC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLR------EDVREFQN  145 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~------~~~~~~~g  145 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.++      +  ..+.|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~--~~~~g   90 (111)
T 1x4h_A           13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG--LKLDG   90 (111)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC--EESSS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC--cEEcC
Confidence            3567999999999999999999999999998888753     378999999999999999999998      6  68999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      ++|+
T Consensus        91 ~~l~   94 (111)
T 1x4h_A           91 RQLK   94 (111)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            8763

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.63  E-value=9.4e-17  Score=105.73  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             ceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++++++|+    ++|++||.|..+.+..  .++|||||+|+++++|++|++.|+|  ..+.|++|+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   82 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMR   82 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC--CEECCcEEE
Confidence            46799999999999999999    9999999988887753  4789999999999999999999999  789998874

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.63  E-value=1.2e-16  Score=106.31  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.++|+++|+++|++|| |..+.+..      .++|||||+|++.++|++|+ .+++  ..++|++|+
T Consensus        18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~~~~g~~l~   91 (100)
T 2j76_E           18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESLGNRRIR   91 (100)
T ss_dssp             --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--CCBTTBCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--CEECCeEEE
Confidence            468999999999999999999999999 88888743      25899999999999999999 8998  799999874

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.7e-16  Score=107.47  Aligned_cols=71  Identities=11%  Similarity=0.082  Sum_probs=63.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+    ++|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   87 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG--QLLFDRPMH   87 (114)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEeCCCEEE
Confidence            35679999999999999999999999999888877542    689999999999999999999998  689998873

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1e-16  Score=104.48  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=61.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.   +|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus         7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   74 (90)
T 2dnp_A            7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNG--KEVKGKRIN   74 (90)
T ss_dssp             CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            356789999999999999999999999998877764   67999999999999999999998  789999874

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.63  E-value=1.6e-16  Score=110.85  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~i~g~~l~  119 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIR  119 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            567999999999999999999999999998888753     3789999999999999999999999  799999874

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.7e-16  Score=107.75  Aligned_cols=69  Identities=12%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|+ .|++  ..+.|++|+
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~   97 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG--QRLLGVPII   97 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT--EEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC--CEeCCeEEE
Confidence            357999999999999999999999999998888743     36899999999999999999 9998  699998863

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.63  E-value=1.1e-16  Score=103.49  Aligned_cols=70  Identities=9%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++. ++  ..++|++|+
T Consensus         9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~--~~~~g~~i~   83 (87)
T 3s7r_A            9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KE--HRLDGRVID   83 (87)
T ss_dssp             SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SC--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CC--CEECCEEEE
Confidence            3567999999999999999999999999999888753     3689999999999999999965 55  579998863

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.63  E-value=2.1e-16  Score=110.10  Aligned_cols=70  Identities=13%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCce--eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhh----hhcC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF--ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVR----EFQN  145 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~----~~~g  145 (149)
                      ...++|||+|||+++|+++|+++|++||.|..  |++..     .++|||||+|+++ +|.+|+..|++  .    .++|
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g--~~~~~~~~g   97 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA--LHPPLTIDG   97 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT--CCCSCCGGG
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC--CCCCccCCC
Confidence            35679999999999999999999999999966  66643     3789999999999 99999999998  7    8999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      |+|+
T Consensus        98 r~l~  101 (131)
T 2m2b_A           98 KTIN  101 (131)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            9885

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=2e-16  Score=105.99  Aligned_cols=70  Identities=21%  Similarity=0.278  Sum_probs=60.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|.. +.+..    .++|||||+|+++++|++|++. ++  ..+.||+|+
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~--~~~~gr~i~   87 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HK--ERIGHRYIE   87 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TT--CCSSSSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Cc--chhCCcEEE
Confidence            35679999999999999999999999998775 66532    4789999999999999999987 76  799999873

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=8e-17  Score=108.32  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             ccCCCceeEEEeecCCCCCcHHHHHhhhCCCCC-Cceeeee-e-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          73 VRPNHKRCIVILREIPDSTPLEEIRGLFSGKSC-PRFISCE-F-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        73 vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~v~~~-~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      |++..+.++|||+|||+++|+++|+++|++||. |..+.+. .     .++|||||+|+++++|++|++.|++....+.|
T Consensus         2 v~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g   81 (109)
T 2dis_A            2 SSGSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG   81 (109)
T ss_dssp             CSCCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred             cccccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence            344456789999999999999999999999998 8887775 2     37899999999999999999999611158999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      ++|+
T Consensus        82 ~~l~   85 (109)
T 2dis_A           82 HQIA   85 (109)
T ss_dssp             BCCE
T ss_pred             CeEE
Confidence            8874

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.62  E-value=8.5e-17  Score=105.86  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.....++|||||+|+++++|++|++.+++  ..+.|++|+
T Consensus        14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   84 (96)
T 1fjc_A           14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVS   84 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            45689999999999999999999999998877722235799999999999999999999998  789998863

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.62  E-value=1.2e-16  Score=114.99  Aligned_cols=70  Identities=7%  Similarity=0.032  Sum_probs=61.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||  .|..+.+..     .++|||||+|+++++|++|++.|||  ..++|++|+
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~~Gr~l~  130 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG--KVLNGEKVD  130 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCeEeE
Confidence            457999999999999999999999999  777776643     3789999999999999999999998  799999874

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.62  E-value=2.2e-16  Score=118.07  Aligned_cols=70  Identities=4%  Similarity=0.044  Sum_probs=64.5

Q ss_pred             ceeEEEeecCC-CCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIP-DSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp-~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+||| +.+|+++|+++|++||.|..+.+..+.+|||||+|+++++|++|++.|||  ..+.|++|+
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~~l~   73 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNN--NFMFGQKMN   73 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCC--CEECCceEE
Confidence            35799999999 89999999999999999998888766799999999999999999999999  799999874

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-16  Score=106.32  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.   |..+++..    .++|||||+|+++++|++|++ +++  ..++||+|+
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~~~gr~i~   85 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR--MYMGQRYVE   85 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT--CCSSSSCCC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc--ceeCCeEEE
Confidence            4678999999999999999999999987   77777743    378999999999999999999 887  789999875

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.62  E-value=3.9e-16  Score=111.70  Aligned_cols=98  Identities=9%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccCCC------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecC
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRPNH------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNN  117 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg  117 (149)
                      .+.+....|+ ......+.....+|++..      ..++|+|+|||.++|+++|+++|++||.|..+.+..+     ++|
T Consensus        59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g  137 (172)
T 2g4b_A           59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG  137 (172)
T ss_dssp             SSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred             CCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence            4678888888 545555554444554322      3578999999999999999999999999988887543     589


Q ss_pred             eeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         118 SWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       118 ~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|+++++|++|++.|+|  ..++|++|+
T Consensus       138 ~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~  167 (172)
T 2g4b_A          138 YAFCEYVDINVTDQAIAGLNG--MQLGDKKLL  167 (172)
T ss_dssp             EEEEEESSTTHHHHHHHHHTT--CEETTEECE
T ss_pred             EEEEEeCCHHHHHHHHHHcCC--CEECCeEEE
Confidence            999999999999999999999  799999874

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.62  E-value=1.8e-16  Score=111.81  Aligned_cols=70  Identities=13%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.   |..+.+..    .++|||||+|+++++|++|++ +++  ..++||+|+
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g--~~l~gr~i~  118 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR--ESMGHRYIE  118 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE--EESSSSEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CEECCEEEE
Confidence            35679999999999999999999999998   77777753    378999999999999999999 888  799999873

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.61  E-value=1.3e-16  Score=109.46  Aligned_cols=69  Identities=14%  Similarity=0.300  Sum_probs=61.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.   |..+++..    .++|||||+|+++++|++|++ +++  ..+.||+|+
T Consensus        16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~~gr~i~   91 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR--ESMGHRYIE   91 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT--EEETTEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CeECCeEEE
Confidence            4678999999999999999999999998   67777743    378999999999999999999 887  799999863

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=2.8e-16  Score=105.31  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=58.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.+ .+.+..    .++|||||+|+++++|++|++ +++  ..+.||.|+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~~~gr~i~   85 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK--ANMQHRYVE   85 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS--CCSSSSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCC--CeECCcEEE
Confidence            45789999999999999999999999954 666643    378999999999999999995 676  799999874

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.61  E-value=1.2e-16  Score=100.41  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=58.9

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++. ++  ..+.|++|+
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~   71 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY--HNVGLSKCE   71 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS--CCBTTBCCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC--CeECCEEEE
Confidence            589999999999999999999999999888743     3689999999999999999985 55  689999874

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.61  E-value=1.4e-16  Score=106.40  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+   .+|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   76 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNG--KDLEGENIE   76 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCC--CccCCCEEE
Confidence            4578999999999999999999999998887766   478999999999999999999999  689998763

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.9e-16  Score=103.68  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCC-CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSC-PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||. +..+.+  .++|||||+|+++++|++|++.|++. ..+.|++|+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~   76 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGK-VELHGKIME   76 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTT-CEETTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCC-eeECCEEEE
Confidence            4578999999999999999999999998 665554  47999999999999999999999872 378888774

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.60  E-value=1.1e-16  Score=103.25  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCC----C-------CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGK----S-------CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      +.++|||+|||+++|+++|+++|++|    |       .+..+.+.. .+|||||+|+++++|++|+ .+|+  ..+.|+
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g--~~~~g~   80 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDG--IIFQGQ   80 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTT--CEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCC--CEECCe
Confidence            46799999999999999999999999    8       666666544 5899999999999999999 9998  799999


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +|+
T Consensus        81 ~l~   83 (87)
T 2hzc_A           81 SLK   83 (87)
T ss_dssp             ECE
T ss_pred             EEE
Confidence            874

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-16  Score=105.76  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+... ..++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   84 (101)
T 2fc9_A           13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK--REIEGRAIR   84 (101)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC--CEeCCeEEE
Confidence            356899999999999999999999999977443321 24789999999999999999999998  689998763

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=5.1e-16  Score=103.51  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++|| |..+.+..     .++|||||+|+++++|++|+ .|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~   86 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG--ALLGDRSLR   86 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT--CEETTEECE
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC--CeECCeEEE
Confidence            4578999999999999999999999997 77777753     36899999999999999999 8988  799999874

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=3.7e-16  Score=103.53  Aligned_cols=68  Identities=21%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++|  |.|..+.+   .+|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   82 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNG--KVLDGSPIE   82 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSS--EEETTEEEE
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            356799999999999999999999999  76665543   689999999999999999999999  689998763

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.2e-16  Score=105.55  Aligned_cols=70  Identities=11%  Similarity=0.061  Sum_probs=62.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++. ++  ..+.|++|+
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~--~~~~g~~l~   88 (105)
T 2dh8_A           14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP--HTLDGRNID   88 (105)
T ss_dssp             SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS--EEETTEEEB
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC--CeECCEEEE
Confidence            4568999999999999999999999999998888754     3679999999999999999988 76  789998764

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=3.2e-16  Score=108.09  Aligned_cols=69  Identities=14%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|.. +.+..    .++|||||+|+++++|++|++ +++  ..+.|++|+
T Consensus        24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~~gr~i~   97 (124)
T 1wel_A           24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK--QYMGNRFIQ   97 (124)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS--BCSTTSCBE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC--CeECCcEEE
Confidence            4689999999999999999999999998876 33321    378999999999999999999 888  799999874

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.1e-16  Score=107.54  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCC-ceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCP-RFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v-~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++||.| ..+.+..    .++|||||+|+++++|++|++. ++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~--~~~~gr~i~   87 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HR--KKLNGREAF   87 (114)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CS--EEETTEEEE
T ss_pred             CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CC--CccCCeEEE
Confidence            356799999999999999999999999998 7777743    3799999999999999999987 66  789998863

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.9e-16  Score=108.53  Aligned_cols=99  Identities=11%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccC--------CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----ee
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRP--------NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AH  115 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr--------~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~  115 (149)
                      .+.+....|++......+......|..        ..+.++|+|+|||.++|+++|+++|++||.|..+.+..     .+
T Consensus        49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~  128 (166)
T 3md3_A           49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS  128 (166)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred             CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence            366778888866555555444344421        23578999999999999999999999999998887753     36


Q ss_pred             cCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         116 NNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       116 kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|+|||+|+++++|++|++.|+|  ..++|++|+
T Consensus       129 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~  160 (166)
T 3md3_A          129 RGYGFVSFTSQDDAQNAMDSMQG--QDLNGRPLR  160 (166)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEE
Confidence            89999999999999999999999  799999874

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.60  E-value=2.4e-16  Score=110.00  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  136 (140)
T 2ku7_A           61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR  136 (140)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EEETTEEEE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            3578999999999999999999999999998888743     3789999999999999999999998  689999874

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.60  E-value=3.3e-16  Score=102.46  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+++..+++|||||+|+++++|++    +++....++|++|
T Consensus         9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v   76 (89)
T 3d2w_A            9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISV   76 (89)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence            4568999999999999999999999999999988877799999999999999984    4553122346554

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.60  E-value=6.2e-16  Score=108.24  Aligned_cols=69  Identities=16%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCe-eEEEEeccHHHHHHHHHHHHHhhhhcC--ccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-WYITFENDEDAQKAYRYLREDVREFQN--KES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~-afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~i  148 (149)
                      +-..|||+|||+.+|+++|+++|++||.|..|.+..+.+|| |||+|++.++|++|++.|||  ..+.|  ++|
T Consensus        27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG--~~i~g~~~~L   98 (130)
T 3zzy_A           27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG--QNIYNACCTL   98 (130)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTT--CEEETTEEEE
T ss_pred             ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCC--CeecCCCcEE
Confidence            34579999999999999999999999999998886667888 99999999999999999999  68887  544

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=1.6e-16  Score=108.99  Aligned_cols=68  Identities=9%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             ceeEEEe--ecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh-----cCccC
Q psy1630          78 KRCIVIL--REIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF-----QNKES  148 (149)
Q Consensus        78 ~~~tl~v--~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-----~g~~i  148 (149)
                      +.++|||  +|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|||  +++     +|++|
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG--~~~~~~lg~g~~l   98 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNG--KEVVDDLGQKITL   98 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTT--CEEECTTSCEEEC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--CEEccccCCCcEE
Confidence            4568999  67999999999999999999988887754 589999999999999999999999  666     56654

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.6e-16  Score=101.05  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||+|||+++|+++|+++|++| .|..+.+..    .++|+|||+|+++++|++|++ +++  ..+.|++|+
T Consensus         8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~gr~i~   80 (91)
T 2dgw_A            8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMGGRYIE   80 (91)
T ss_dssp             CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS--EEETTEEEE
T ss_pred             CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC--ceeCCcEEE
Confidence            346799999999999999999999999 888887754    368999999999999999999 988  799998873

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.59  E-value=6.7e-16  Score=111.43  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+.+|+++|+++|++||.|..+.+...     ++|||||+|++.++|++|++.|++  ..|.|++|+
T Consensus        70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~  145 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMGQTIQ  145 (165)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            35689999999999999999999999999988887543     689999999999999999999999  689999874

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.59  E-value=5e-16  Score=110.89  Aligned_cols=70  Identities=20%  Similarity=0.321  Sum_probs=63.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..|.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~  112 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLDDRIIR  112 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            568999999999999999999999999998888753     3689999999999999999999998  689998874

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=1.4e-15  Score=103.08  Aligned_cols=69  Identities=7%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++.||+  ..++|++
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~~~   95 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG--KFIKTPP   95 (114)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT--CCCCCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEcCCc
Confidence            3568999999999999999999999999988888754    3689999999999999999999998  6885443

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.3e-16  Score=105.07  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.++|||+|||+++|+++|+++|++| .|..|++..    .++|||||+|+++++|++|+ .+++  ..++||.|
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~--~~~~gr~i   85 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNR--MLMIQRYV   85 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTT--EEETTEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCC--CeECCeEE
Confidence            45799999999999999999999999 777777743    37899999999999999999 5777  79999876

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.58  E-value=3.9e-16  Score=107.26  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|+ .+++  ..|.|++|+
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~  108 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE--TVFRGRTIK  108 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC--CeECCeEEE
Confidence            357999999999999999999999999998888754     25899999999999999999 7988  689999874

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.58  E-value=3.3e-16  Score=109.62  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  115 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--FNILNKRLK  115 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--EECSSCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            457999999999999999999999999998888753     3689999999999999999999998  689998863

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=3.3e-16  Score=106.53  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.+++   .+.|++|+
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l~   89 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKAN   89 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cCCCEEEE
Confidence            3568999999999999999999999999998888743     3689999999999999999998875   78888773

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.58  E-value=1.1e-15  Score=114.08  Aligned_cols=128  Identities=9%  Similarity=0.077  Sum_probs=89.9

Q ss_pred             hhhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC--------CceeEEEe
Q psy1630          20 DAYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN--------HKRCIVIL   84 (149)
Q Consensus        20 d~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~--------~~~~tl~v   84 (149)
                      +.-|++.+..-|-| .+.++..-.  +-+.+    -.+.+....|++......+.....++...        ...++|||
T Consensus        29 e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v  108 (213)
T 4f02_A           29 EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFI  108 (213)
T ss_dssp             HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEE
T ss_pred             HHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceE
Confidence            35566666655543 444443211  11111    24677888888765544433322233211        13468999


Q ss_pred             ecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          85 REIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        85 ~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+++|+++|+++|++||.|..+++..   .++|||||+|++.++|++|++.|||  ..++|++|+
T Consensus       109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng--~~~~g~~i~  174 (213)
T 4f02_A          109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF  174 (213)
T ss_dssp             ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence            99999999999999999999998888754   3789999999999999999999999  799999874

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=5.3e-16  Score=105.17  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee----e-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC----E-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~----~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+    . ..++|||||+|++.++|++|++.|++  ..+.|++|+
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~   98 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG--YKLYGKILV   98 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT--CBCSSCBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            5689999999999999999999999998854322    2 24689999999999999999999999  689999874

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.58  E-value=4.1e-16  Score=109.46  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g--~~i~g~~l~  120 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLDGRELR  120 (135)
T ss_dssp             GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT--CCSSSSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            567999999999999999999999999999888743     3689999999999999999999998  689999874

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6.6e-16  Score=102.59  Aligned_cols=71  Identities=15%  Similarity=0.314  Sum_probs=59.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++++.+..+.-.  ..++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~   85 (102)
T 2fc8_A           13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEIDGNKVT   85 (102)
T ss_dssp             CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            456899999999999999999999988644433221  13689999999999999999999999  699999874

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.57  E-value=9.6e-16  Score=114.46  Aligned_cols=71  Identities=13%  Similarity=0.075  Sum_probs=62.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.+||||+|||+++|+++|+++|++||.|..+++..     .++|||||+|+++++|++|++.+++  ..+.|++|+
T Consensus        13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~--~~~~g~~i~   88 (213)
T 4f02_A           13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIKGKPVR   88 (213)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh--hhcCCcccc
Confidence            3567999999999999999999999999998888753     3789999999999999999999998  688888763

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.57  E-value=3.3e-15  Score=110.43  Aligned_cols=99  Identities=12%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccCC-----------------CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRPN-----------------HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC  111 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr~-----------------~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~  111 (149)
                      .+.+....|++......+......|.+.                 ...++|||+|||.++|+++|+++|++||.|..+.+
T Consensus        78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i  157 (216)
T 2qfj_A           78 EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL  157 (216)
T ss_dssp             SSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred             CCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence            4677888888754444444444444321                 13479999999999999999999999999988887


Q ss_pred             ee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         112 EF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       112 ~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..     .++|+|||+|++.++|.+|++.|++  ..++|++|+
T Consensus       158 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~i~  198 (216)
T 2qfj_A          158 ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL--FDLGGQYLR  198 (216)
T ss_dssp             EECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred             EecCCCCCcCceEEEEecCHHHHHHHHHHccC--CEeCCcEEE
Confidence            54     2589999999999999999999999  799999874

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=7.1e-16  Score=106.97  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCC----ceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCP----RFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v----~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.++|||+|||+++|+++|+++|++||.|    ..|.+..    .++|||||+|+++++|++|++. ++  ..+.||.|
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~l~gR~i   97 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HK--DLLGKRYI   97 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TT--EESSSCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CC--CeeCCeEE
Confidence            456799999999999999999999999976    4566643    3789999999999999999986 66  78999876


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      .
T Consensus        98 ~   98 (123)
T 2dha_A           98 E   98 (123)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.3e-15  Score=100.70  Aligned_cols=63  Identities=14%  Similarity=0.182  Sum_probs=55.9

Q ss_pred             eEEEeecCCCCCcHHH----HHhhhCCC-CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEE----IRGLFSGK-SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~----l~~~F~~~-G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+|||+|||+++++++    |+++|++| |.|..|     ..|+|||+|++.++|++|++.|+|  ..+.||+|+
T Consensus        10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G--~~l~gr~i~   77 (96)
T 2diu_A           10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMEN--EDVFGNRII   77 (96)
T ss_dssp             EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred             eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcC--CccCCceEE
Confidence            3499999999999988    55899999 587776     349999999999999999999999  799999985

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-15  Score=100.29  Aligned_cols=69  Identities=4%  Similarity=0.002  Sum_probs=58.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+........||||+|+++++|++|++ +++  ..++|++|+
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g--~~~~g~~l~   75 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQ--HSLGGHRLR   75 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSC--CEETTEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCC--eEECCEEEE
Confidence            456899999999999999999999999988773322222299999999999999999 988  799999874

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.57  E-value=5.2e-16  Score=104.99  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.+ +  ..++|++|
T Consensus        23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~--~~l~g~~l   96 (109)
T 2rs2_A           23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R--HELDSKTI   96 (109)
T ss_dssp             ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C--EEETTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C--CcCCCEEE
Confidence            3567999999999999999999999999998888743     36899999999999999999876 3  58899876

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=7.9e-16  Score=104.68  Aligned_cols=69  Identities=10%  Similarity=0.061  Sum_probs=61.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++. ++  ..+.|++|+
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~   99 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP--HSIDGRVVE   99 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS--EEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC--cEECCEEEE
Confidence            458999999999999999999999999999888754     2689999999999999999987 66  689998763

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.35  E-value=1.9e-16  Score=107.85  Aligned_cols=70  Identities=13%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCce--------eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF--------ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--------v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      +.++|||+|||.++|+++|+++|++||.|..        +.+..     .++|||||+|+++++|++|++.|++  ..+.
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~   83 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG--KEFS   83 (116)
Confidence            4678999999999999999999999999887        65532     3689999999999999999999999  6999


Q ss_pred             CccCC
Q psy1630         145 NKESK  149 (149)
Q Consensus       145 g~~ik  149 (149)
                      |++|+
T Consensus        84 g~~l~   88 (116)
T 2lcw_A           84 GNPIK   88 (116)
Confidence            99874

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.57  E-value=1e-15  Score=107.78  Aligned_cols=71  Identities=11%  Similarity=0.105  Sum_probs=61.8

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCcee--------eee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFI--------SCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v--------~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+.++|||+|||+++|+++|+++|++||.|..+        .+.  ..++|||||+|.+.++|++|+..|||  ..+.|+
T Consensus        43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~  120 (143)
T 3egn_A           43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG--YVLFGK  120 (143)
T ss_dssp             SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT--BEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC--CEeCCc
Confidence            456799999999999999999999999998763        222  24789999999999999999999999  799999


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +|+
T Consensus       121 ~l~  123 (143)
T 3egn_A          121 PMV  123 (143)
T ss_dssp             ECE
T ss_pred             EEE
Confidence            874

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.57  E-value=5.6e-16  Score=110.55  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.|+|  ..+.|++|+
T Consensus        69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  143 (158)
T 2kn4_A           69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLDGRELR  143 (158)
T ss_dssp             BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EESSSSEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            468999999999999999999999999988887743     3789999999999999999999999  689999873

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.56  E-value=3.1e-15  Score=106.44  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=78.7

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccC------CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecC
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRP------NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNN  117 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr------~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg  117 (149)
                      .+.+....|++......+......|..      ..+.++|+|+|||.++|+++|+++|++||.|..+.+..+     ++|
T Consensus        53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g  132 (168)
T 1b7f_A           53 TSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG  132 (168)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred             CCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcce
Confidence            467788888875555555444444431      124689999999999999999999999999988887542     579


Q ss_pred             eeEEEEeccHHHHHHHHHHHHHhhhhcC--ccCC
Q psy1630         118 SWYITFENDEDAQKAYRYLREDVREFQN--KESK  149 (149)
Q Consensus       118 ~afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~ik  149 (149)
                      +|||+|++.++|.+|++.|+|  ..+.|  ++|+
T Consensus       133 ~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~l~  164 (168)
T 1b7f_A          133 VAFVRYNKREEAQEAISALNN--VIPEGGSQPLS  164 (168)
T ss_dssp             EEEEEESSHHHHHHHHHHHTT--CCCTTCSSCCE
T ss_pred             EEEEEECCHHHHHHHHHHhcC--CEecCCCeEEE
Confidence            999999999999999999999  68877  7763

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.56  E-value=6.4e-16  Score=109.34  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=59.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++|| +..|.+..    .++|||||+|+++++|++|+ .+++  ..+.||+|+
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g--~~l~gR~i~  116 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDR--ANMQHRYIE  116 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCS--CSSSSCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCC--CEECCEEEE
Confidence            457899999999999999999999999 66777643    37899999999999999999 6777  799999874

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.1e-15  Score=100.40  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceee-eee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFIS-CEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~-~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||+|||+++|+++|+++|++||.|..++ +.. ...|.|||+|+++++|++|++.||+  ..++|++|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~   85 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG--FQLENFTLK   85 (96)
T ss_dssp             CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence            3467899999999999999999999999988884 543 2445599999999999999999999  799999874

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.56  E-value=7.2e-16  Score=102.51  Aligned_cols=67  Identities=21%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++  ++  ..++|++|
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~--~~~~g~~l   78 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQ--INFHGKKL   78 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CC--CEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CC--CeECCEEE
Confidence            468999999999999999999999999998888754    278999999999999999998  44  57788766

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.56  E-value=4.4e-16  Score=103.38  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.+....+.    ..++|||||+|++.++|++|++ |++  ..+.|++|+
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g~~l~   88 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG--LKVFGNEIK   88 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG--CCBTTBCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC--cEECCcEEE
Confidence            46899999999999999999999999976552221    1378999999999999999998 988  799999874

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.56  E-value=2.3e-15  Score=104.86  Aligned_cols=69  Identities=23%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCc--eeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPR--FISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~--~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||+++|+++|+++|++|+ |.  .|.+..    .++|||||+|+++++|++|++. ++  ..++||+|+
T Consensus        40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~--~~l~gR~I~  114 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HK--ERIGHRYIE  114 (126)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TT--CCBTTBCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CC--CEECCEEEE
Confidence            3467899999999999999999999994 44  566543    3789999999999999999985 55  699999884

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.56  E-value=3.6e-15  Score=105.71  Aligned_cols=126  Identities=14%  Similarity=0.092  Sum_probs=89.3

Q ss_pred             hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630          21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI   87 (149)
Q Consensus        21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l   87 (149)
                      .-|++.+..-|-| .+.++..-.  +-+.+    -.+.+....|++......+......|...      .+.++|+|+||
T Consensus        17 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl   96 (167)
T 1fxl_A           17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL   96 (167)
T ss_dssp             HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESC
T ss_pred             HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCC
Confidence            4466666655643 344433210  11111    24677888888754445554444444321      24578999999


Q ss_pred             CCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          88 PDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        88 p~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      |.++|+++|+++|++||.|..+.+..+     ++|+|||+|++.++|++|++.|+|  ..+.|+.+
T Consensus        97 ~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~~  160 (167)
T 1fxl_A           97 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG--QKPSGATE  160 (167)
T ss_dssp             CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CCCTTCSS
T ss_pred             CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC--CccCCCcc
Confidence            999999999999999999988887543     589999999999999999999999  79999763

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.56  E-value=3.4e-15  Score=103.71  Aligned_cols=64  Identities=14%  Similarity=0.010  Sum_probs=57.1

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCe-eEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-WYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~-afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      ..|||+|||+.+|+++|+++|++||.|..|.+..+ .|| |||+|++.++|++|++.|||  ..+.|+
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG--~~i~g~   90 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNG--ADIYAG   90 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTT--CCCBTT
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--CEecCC
Confidence            45789999999999999999999999998887443 596 99999999999999999999  688773

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.56  E-value=2.1e-15  Score=106.95  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+.+..     .++|+|||+|.++++|++|++.+++  ..+.|++|+
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~   75 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIK   75 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCceEE
Confidence            47899999999999999999999999988887744     2579999999999999999999998  799998873

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.56  E-value=1.2e-15  Score=115.90  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||  .|..|.+..     .++|||||+|++.++|++||+.||+  ..|.|++|+
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~Gr~l~  143 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQNPV  143 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTTBCCE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECCEEeE
Confidence            457899999999999999999999999  788777743     3789999999999999999999998  799999874

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=2.8e-15  Score=98.99  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=60.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|+  ++|+++|+++|++||.|..+.+. .++|||||+|+++++|++|++.|++  ..+.|++|+
T Consensus        13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~   80 (97)
T 1x5p_A           13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNG--TQVESVQLK   80 (97)
T ss_dssp             CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTT--EEETTEEEE
T ss_pred             CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            35679999995  89999999999999998888774 4799999999999999999999998  689998763

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.55  E-value=2.7e-15  Score=106.75  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|+|||+|.++++|++|++.+++  ..+.|++|+
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~   76 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNKRLK   76 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC--CEeCCcEEE
Confidence            357999999999999999999999999988887743     2679999999999999999999998  689998873

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.55  E-value=3.3e-15  Score=109.06  Aligned_cols=70  Identities=7%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|+|+|||.++|+++|+++|++||.|..+.+..+     ++|+|||+|+++++|++|++.|+|  ..++|++|+
T Consensus       113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~  187 (198)
T 2yh0_A          113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGDKKLL  187 (198)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            4589999999999999999999999999988887543     589999999999999999999999  799999874

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.7e-15  Score=100.82  Aligned_cols=68  Identities=13%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.  +  ..++|++|
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~--~~~~g~~l   85 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R--HMIDGRWC   85 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C--EEETTEEE
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--C--CeeCCeEE
Confidence            4568999999999999999999999999998888754     3689999999999999999973  4  57888876

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.54  E-value=3.2e-15  Score=109.47  Aligned_cols=69  Identities=13%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++.+++  ..++|++|+
T Consensus        88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng--~~l~Gr~l~  160 (177)
T 2f3j_A           88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPLDGRPMD  160 (177)
T ss_dssp             CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTT--CBCSSSBCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence            58999999999999999999999999999888754    3689999999999999999999998  699999874

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.9e-15  Score=107.01  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |+|||+|||.++|+++|+++|++||.|..+.+..    .++|+|||+|.++++|++|++.+++  ..+.|++|+
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~i~   72 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG--KQIENNIVK   72 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCC--CccCCCeeE
Confidence            5899999999999999999999999988887743    3689999999999999999999998  689998763

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.54  E-value=3.8e-15  Score=109.29  Aligned_cols=69  Identities=12%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             eeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||. ++|+++|+++|++||.|..+.+..+.+|+|||+|.++++|++|++.+++  ..+.|++|+
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~   72 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR   72 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTT--CCCSSCCCE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CeecCeEEE
Confidence            47999999999 9999999999999999999888766799999999999999999999999  799999873

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.54  E-value=2.3e-15  Score=109.16  Aligned_cols=71  Identities=14%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC--ccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQN--KESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~ik  149 (149)
                      ..-.+|||+|||+.+|+++|+++|++||.|..|.+.. ..+|||||+|+++++|++|++.|||  ..+.|  ++|+
T Consensus        44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG--~~i~g~g~~L~  117 (164)
T 1sjr_A           44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG--QNIYNACCTLR  117 (164)
T ss_dssp             CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTT--BCSSSSCSCEE
T ss_pred             CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCC--CEecCCCcEEE
Confidence            3456799999999999999999999999999888743 3578999999999999999999999  68855  7653

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.54  E-value=2.2e-15  Score=108.34  Aligned_cols=98  Identities=15%  Similarity=0.231  Sum_probs=75.8

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccCC--------CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeE
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRPN--------HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWY  120 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr~--------~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~af  120 (149)
                      .+.+....|++ .....+......|.+.        .+.++|||+|||.++|+++|+++|++||.|..+.....++|+||
T Consensus        62 ~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~af  140 (175)
T 1fje_B           62 ESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAY  140 (175)
T ss_dssp             SSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEE
T ss_pred             CCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEE
Confidence            46678888884 3334444333333321        24679999999999999999999999998877722235799999


Q ss_pred             EEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         121 ITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       121 VeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |+|+++++|.+|++.|+|  ..++|++|+
T Consensus       141 V~f~~~~~A~~A~~~l~g--~~~~g~~i~  167 (175)
T 1fje_B          141 IEFKSEADAEKNLEEKQG--AEIDGRSVS  167 (175)
T ss_dssp             EECSSHHHHHHHHHHHTE--EEETTEEEE
T ss_pred             EEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence            999999999999999998  799999873

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.2e-15  Score=101.68  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYL  136 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l  136 (149)
                      ..++|||+|||+++|+++|+++|++||.|. +.+..        .++|||||+|+++++|++|++.+
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~   72 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC   72 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence            457899999999999999999999999988 54421        46899999999999999999887

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=8.3e-15  Score=94.92  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+..+++|||||+|+++++|++|    ++....+.|++|
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l   70 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISV   70 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEE
Confidence            4579999999999999999999999999999988777899999999999999865    332133466554

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.52  E-value=1.7e-14  Score=103.02  Aligned_cols=70  Identities=14%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhc---CccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQ---NKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~---g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..+    ++|+|||+|+++++|++|++.|||  ..+.   |++|+
T Consensus        94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~~~l~  170 (175)
T 3nmr_A           94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ--AQTMEGCSSPMV  170 (175)
T ss_dssp             GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--SCCCTTCSSCCE
T ss_pred             CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC--CcccCCCCCCeE
Confidence            5689999999999999999999999999988887543    689999999999999999999998  4554   37763

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.52  E-value=7.2e-15  Score=104.58  Aligned_cols=124  Identities=10%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             hhhhhhcCCCcee-eeEEeech--hhhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630          21 AYLLSQMDNDQYV-PIWTVANF--NQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI   87 (149)
Q Consensus        21 ~~l~~~~~~~g~v-pi~~~~~F--~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l   87 (149)
                      .-|++.+..-|-| .+.++..-  .+-+.+    -.+.+....|++..  ..++.....+.+.      .+.++|||+||
T Consensus        18 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~~~~g~~i~v~~~~~~~~~~~~~~l~V~nl   95 (167)
T 2cjk_A           18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ--HILDGKVIDPKRAIPRDEQDKTGKIFVGGI   95 (167)
T ss_dssp             HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC--CEETTEECCCEECCCHHHHHHCEEEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc--cccCCeEcccccccchhhccCCCeEEECCC
Confidence            4566666666643 34333221  111111    24677888888852  2333322333322      24679999999


Q ss_pred             CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          88 PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        88 p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |.++|+++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++ +++  ..++|++|+
T Consensus        96 p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~--~~~~g~~i~  159 (167)
T 2cjk_A           96 GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF--IDFKDRKIE  159 (167)
T ss_dssp             CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE--ECSSSSCEE
T ss_pred             CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC--EEeCCeEEE
Confidence            99999999999999999999888743     367999999999999999997 666  799999874

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.51  E-value=9.9e-15  Score=106.36  Aligned_cols=125  Identities=10%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------------CceeE
Q psy1630          21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------------HKRCI   81 (149)
Q Consensus        21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------------~~~~t   81 (149)
                      .-|++.+..-|-| .+.++..-.  +-+.+    -.+.+....|+.. ....+......|.+.            ...++
T Consensus        28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~  106 (196)
T 1l3k_A           28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK  106 (196)
T ss_dssp             HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSE
T ss_pred             HHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcce
Confidence            4466666655543 444443211  11111    2467888888876 333443333333211            13478


Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|.+|++. ++  ..++|++|+
T Consensus       107 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~--~~~~G~~i~  176 (196)
T 1l3k_A          107 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY--HTVNGHNCE  176 (196)
T ss_dssp             EEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC--CEETTEECE
T ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC--cEECCEEEE
Confidence            99999999999999999999999998888754     2689999999999999999976 55  689998873

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.51  E-value=1.4e-14  Score=103.56  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------AHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..       .++|+|||+|.++++|++|++.+++  ..+.
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~   73 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN--MKVL   73 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT--TCCC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC--cEEc
Confidence            458999999999999999999999999998887743       4689999999999999999999988  4554

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.51  E-value=5.1e-15  Score=111.65  Aligned_cols=71  Identities=11%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||. ++|+++|+++|++||.|..+.+..+.+|||||+|.++++|++|++.+++  ..+.|++|+
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g~~l~  103 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR  103 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence            3568999999999 9999999999999999988888776789999999999999999999999  799999873

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.50  E-value=2.8e-14  Score=107.55  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++|| .|..+.+-...+|+|||+|++.++|.+|++.|+|  ..+. |++|+
T Consensus       151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~~g~~l~  221 (229)
T 2adc_A          151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN--HDLGENHHLR  221 (229)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTT--CBSSSSCBCE
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCC--CccCCCCeEE
Confidence            57899999999999999999999999 8888887445789999999999999999999999  7898 88874

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.50  E-value=9.9e-15  Score=107.87  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|.++++|++|++.+++  ..+.|++|+
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~  101 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLGGRNIK  101 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC-CCCE
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeCCeeEE
Confidence            457999999999999999999999999988888743     3689999999999999999999998  689998873

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.50  E-value=3.3e-14  Score=109.17  Aligned_cols=98  Identities=11%  Similarity=0.105  Sum_probs=79.9

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEe
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFE  124 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~  124 (149)
                      .+.+....|+.......+......|....+.++|||+|||..+|+++|+++|++||.|..+.+..+    ++|+|||+|+
T Consensus        66 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~  145 (261)
T 3sde_A           66 ESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFA  145 (261)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEES
T ss_pred             CCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeC
Confidence            466778888876555556555556666667789999999999999999999999999988887543    6899999999


Q ss_pred             ccHHHHHHHHHHHHHhhhhc----CccC
Q psy1630         125 NDEDAQKAYRYLREDVREFQ----NKES  148 (149)
Q Consensus       125 ~~e~A~~Ai~~l~~~~~~~~----g~~i  148 (149)
                      +.++|.+|+..+++  ..+-    |++|
T Consensus       146 ~~~~A~~A~~~l~~--~~~~~~~~~r~i  171 (261)
T 3sde_A          146 AKPPARKALERCGD--GAFLLTTTPRPV  171 (261)
T ss_dssp             SHHHHHHHHHHHHH--SCEESSSSCCBC
T ss_pred             CHHHHHHHHHHhcC--CeEEecCCCceE
Confidence            99999999999976  4554    6665

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.50  E-value=2.4e-14  Score=105.00  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik  149 (149)
                      .++|+|+|||.++|+++|+++|++|| .|..+++-...+|+|||+|++.++|.+|++.|+|  ..+. |++|+
T Consensus       120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~l~  190 (198)
T 1qm9_A          120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN--HDLGENHHLR  190 (198)
T ss_dssp             CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTS--SCCSSCCSCC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCCCeEE
Confidence            67899999999999999999999999 9998888445689999999999999999999999  7888 88875

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.49  E-value=1.7e-14  Score=111.39  Aligned_cols=128  Identities=9%  Similarity=0.097  Sum_probs=96.8

Q ss_pred             cccch---hhhhhhcCCCceeeeEEeechhhhhhh----chhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCC
Q psy1630          16 NLAND---AYLLSQMDNDQYVPIWTVANFNQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIP   88 (149)
Q Consensus        16 Nl~~d---~~l~~~~~~~g~vpi~~~~~F~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp   88 (149)
                      ||+.+   .-|++.+..-|-+.+.+    .+-+.+    -.+.+....|+.......+......|......++|||+|||
T Consensus        29 nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp  104 (284)
T 3smz_A           29 GLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLP  104 (284)
T ss_dssp             CCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCC
T ss_pred             CCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCC
Confidence            55443   45677777777333333    222222    34678888888765555566555566666677899999999


Q ss_pred             CCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          89 DSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        89 ~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|+++|+++|++||.|..+.+..     .++|+|||+|.++++|.+|++.+++  ..+.|++|+
T Consensus       105 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~i~  168 (284)
T 3smz_A          105 PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG--KPLGPRTLY  168 (284)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            9999999999999999988887643     2689999999999999999999998  799998873

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.47  E-value=2.8e-14  Score=101.50  Aligned_cols=68  Identities=10%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.  +  ..++|++|+
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~--~~~~g~~i~   74 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q--HILDGKVID   74 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C--CEETTEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c--cccCCeEcc
Confidence            357999999999999999999999999988887743     3689999999999999999973  3  578887763

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.47  E-value=5e-14  Score=116.11  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||..+|+++|+++|++||.|..|.+..     .++|||||+|+++++|++||+.|||  ..|.|++|+
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~gr~i~  175 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRVL  175 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEECCEEEE
Confidence            457999999999999999999999999999888753     3689999999999999999999999  699998874

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.46  E-value=5.4e-14  Score=108.52  Aligned_cols=99  Identities=9%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccC---------CCceeEEEeecCCCCC-cHHHHHhhhCCCCCCceeeeeee----
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRP---------NHKRCIVILREIPDST-PLEEIRGLFSGKSCPRFISCEFA----  114 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr---------~~~~~tl~v~~lp~~~-t~~~l~~~F~~~G~v~~v~~~~~----  114 (149)
                      .+.+....|++......+......|..         ..+.++|||+|||.++ |+++|+++|++||.|..+.+..+    
T Consensus       145 ~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~  224 (284)
T 3smz_A          145 MKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQ  224 (284)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCC
Confidence            456777778765544444433333321         1246799999999995 99999999999999998887543    


Q ss_pred             ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         115 HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       115 ~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|+|||+|+++++|.+|++.|+|  ..+.|++|+
T Consensus       225 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~  257 (284)
T 3smz_A          225 LKGFAVLEYETAEMAEEAQQQADG--LSLGGSHLR  257 (284)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             cccEEEEEeCCHHHHHHHHHHhCC--CccCCeEEE
Confidence            689999999999999999999999  799999874

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.46  E-value=2.8e-14  Score=109.62  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|.++++|++|+..+++  ..+.|++|+
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~   89 (261)
T 3sde_A           21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDG--TILKSRPLR   89 (261)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCC--cEECCceeE
Confidence            568999999999999999999999999999888754 689999999999999999999998  689998873

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.46  E-value=1.6e-14  Score=105.19  Aligned_cols=68  Identities=12%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|.++++|++|++. ++  ..+.|++|
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~--~~~~g~~l   84 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RP--HKVDGRVV   84 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CS--CEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CC--CEECCEEe
Confidence            467999999999999999999999999988887754     2689999999999999999976 55  68888876

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.46  E-value=2.9e-14  Score=109.93  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+++..+.+|+|||+|++.++|.+|++.|+|  ..+. |++|+
T Consensus       206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~l~  276 (282)
T 3pgw_A          206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQG--FKITQNNAMK  276 (282)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCC--cEeCCCCEEE
Confidence            4578999999999999999999999999999888766679999999999999999999999  6888 98874

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.46  E-value=3.1e-14  Score=96.00  Aligned_cols=70  Identities=20%  Similarity=0.091  Sum_probs=59.8

Q ss_pred             ceeEEEeecCCC-----CCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          78 KRCIVILREIPD-----STPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        78 ~~~tl~v~~lp~-----~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      +.++|++.|+..     +.++++|++.|++||.|..+.+..      .++|+|||+|+++++|++|++.|||  +.|+||
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG--~~~~Gr   84 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG--RYFGGR   84 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC--CEECCc
Confidence            457899999963     237899999999999999888754      2589999999999999999999999  799999


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +|+
T Consensus        85 ~i~   87 (105)
T 2pe8_A           85 VVK   87 (105)
T ss_dssp             ECE
T ss_pred             EEE
Confidence            874

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.46  E-value=3.9e-14  Score=109.18  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             ceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+    ++|++||.|..+.+..  .++|||||+|++.++|++|++.+++  ..+.|++|+
T Consensus         8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~   83 (282)
T 3pgw_A            8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMR   83 (282)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC--CeeCCcEEE
Confidence            46899999999999999977    8999999998887743  4789999999999999999999999  799998874

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.45  E-value=3.4e-14  Score=108.76  Aligned_cols=68  Identities=16%  Similarity=0.119  Sum_probs=62.0

Q ss_pred             ceeEEEeecCCCCC---------cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh-----
Q psy1630          78 KRCIVILREIPDST---------PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF-----  143 (149)
Q Consensus        78 ~~~tl~v~~lp~~~---------t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-----  143 (149)
                      ..+||||+|||..+         ++++|+++|++||.|..|++.. .+|||||+|++.++|+.|++.|++  ..+     
T Consensus       133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g--~~l~~~~~  209 (240)
T 3u1l_A          133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSN--QTLLLPSD  209 (240)
T ss_dssp             CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTT--CCCCCTTS
T ss_pred             CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCC--CEEecccc
Confidence            46899999999988         7999999999999999888754 799999999999999999999999  688     


Q ss_pred             -------cCccC
Q psy1630         144 -------QNKES  148 (149)
Q Consensus       144 -------~g~~i  148 (149)
                             .|++|
T Consensus       210 ~e~~~~~~gr~L  221 (240)
T 3u1l_A          210 KEWDDRREGTGL  221 (240)
T ss_dssp             TTGGGGGGSCCC
T ss_pred             ccccccCCCCEE
Confidence                   78876

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.6e-14  Score=98.96  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=56.9

Q ss_pred             eEEEeecC----CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEec----cHH----HHHHHH--HHHHHh
Q psy1630          80 CIVILREI----PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFEN----DED----AQKAYR--YLREDV  140 (149)
Q Consensus        80 ~tl~v~~l----p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~----~e~----A~~Ai~--~l~~~~  140 (149)
                      ..|||+||    |+.+++++|+++|++||+|..+.+..     .++|||||+|.+    +++    |.+|+.  .++|  
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng--   80 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG--   80 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC--
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC--
Confidence            47999999    99999999999999999999888754     379999999996    444    788887  5676  


Q ss_pred             hhhcCccCC
Q psy1630         141 REFQNKESK  149 (149)
Q Consensus       141 ~~~~g~~ik  149 (149)
                      ..++|++|+
T Consensus        81 ~~I~Gr~ir   89 (136)
T 2j8a_A           81 CFIMGFKFE   89 (136)
T ss_dssp             EEETTEEEE
T ss_pred             CeecCcEEE
Confidence            799999874

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=1.1e-13  Score=93.79  Aligned_cols=71  Identities=17%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CceeEEEeecCCCCCc-----------HHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          77 HKRCIVILREIPDSTP-----------LEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t-----------~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      .+.++|++.|+....+           +++|+++|++||.|..+.+. ..++|||||+|+++++|++|++.|||  ..|+
T Consensus        13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng--~~~~   90 (112)
T 2dit_A           13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDG--RWFG   90 (112)
T ss_dssp             CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTT--CEET
T ss_pred             CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence            4568999999954432           68999999999999988763 24799999999999999999999999  7999


Q ss_pred             CccCC
Q psy1630         145 NKESK  149 (149)
Q Consensus       145 g~~ik  149 (149)
                      ||+|+
T Consensus        91 gr~l~   95 (112)
T 2dit_A           91 GRQIT   95 (112)
T ss_dssp             TEECE
T ss_pred             CcEEE
Confidence            99874

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.42  E-value=2.5e-14  Score=102.19  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=56.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCC----CC-------CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGK----SC-------PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~----G~-------v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      +.++|||+|||.++|+++|+++|++|    |.       +..+.+. .++|+|||+|.++++|++|+ .+++  ..+.|+
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~--~~~~g~   78 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQ   78 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTT--CEETTE
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCC--cEecCc
Confidence            45799999999999999999999999    62       2333332 36999999999999999999 7888  689998


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +|+
T Consensus        79 ~i~   81 (172)
T 2g4b_A           79 SLK   81 (172)
T ss_dssp             ECE
T ss_pred             eee
Confidence            873

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.40  E-value=1.1e-13  Score=103.25  Aligned_cols=67  Identities=10%  Similarity=0.149  Sum_probs=58.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCC--ceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCP--RFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v--~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .++|||+|||+++|+++|+++|++||.|  ..+.+..   ..+|+|||+|++.++|.+|+..|||  .++.|+.
T Consensus       123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng--~~~~g~~  194 (205)
T 3tyt_A          123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH--YQMKNPN  194 (205)
T ss_dssp             CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT--CEECCSS
T ss_pred             cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC--CCccCCC
Confidence            4689999999999999999999999998  6666532   2469999999999999999999999  6888874

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.39  E-value=2.7e-13  Score=104.90  Aligned_cols=97  Identities=16%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             hhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeee----eecCeeEEEE
Q psy1630          49 KDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEF----AHNNSWYITF  123 (149)
Q Consensus        49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~----~~kg~afVeF  123 (149)
                      .+.+....|++ .....+......|.+ .+.++|||+|||.++|+++|+++|++|| .|..+.+..    .++|||||+|
T Consensus        89 ~~~~~A~~A~~-~~~~~~~g~~i~v~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f  166 (292)
T 2ghp_A           89 ARYDGALAAIT-KTHKVVGQNEIIVSH-LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDV  166 (292)
T ss_dssp             SSHHHHHHHHT-TTTCEETTEECEEEE-CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEEC
T ss_pred             CCHHHHHHHHH-hCCcEeCCcEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEE
Confidence            46788888885 444555444444443 3567999999999999999999999999 999888743    3789999999


Q ss_pred             eccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630         124 ENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus       124 ~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++++|++|++.|++  ..+.|++|+
T Consensus       167 ~~~~~a~~A~~~l~g--~~~~g~~l~  190 (292)
T 2ghp_A          167 TSKEDARYCVEKLNG--LKIEGYTLV  190 (292)
T ss_dssp             SSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCHHHHHHHHHHhCC--CEeCCcEEE
Confidence            999999999999998  789998773

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.39  E-value=5.9e-14  Score=102.37  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCC----CC-------CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGK----SC-------PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~----G~-------v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .++|||+|||+++|+++|+++|++|    |.       +..+.+ ..++|||||+|.++++|++|+ .+++  ..+.|++
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g--~~~~g~~   79 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQS   79 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTT--EEETTEE
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcC--CEEcCce
Confidence            4799999999999999999999999    42       222222 237999999999999999999 7888  6899987


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus        80 i~   81 (198)
T 2yh0_A           80 LK   81 (198)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.38  E-value=1.1e-13  Score=107.25  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+..+   .+|+|||+|.++++|++|++ +++  ..+.|++|+
T Consensus        39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~--~~~~g~~i~  111 (292)
T 2ghp_A           39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTH--KVVGQNEII  111 (292)
T ss_dssp             ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCC--cEeCCcEEE
Confidence            46789999999999999999999999999988887542   58999999999999999995 777  799998873

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.37  E-value=1.8e-13  Score=92.17  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             ceeEEEeecC--CCCC--------cHHHHHhhhCCCCCCceeeeeee-------ecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630          78 KRCIVILREI--PDST--------PLEEIRGLFSGKSCPRFISCEFA-------HNNSWYITFENDEDAQKAYRYLREDV  140 (149)
Q Consensus        78 ~~~tl~v~~l--p~~~--------t~~~l~~~F~~~G~v~~v~~~~~-------~kg~afVeF~~~e~A~~Ai~~l~~~~  140 (149)
                      +.+.|.+.|+  |.+.        ..++|++.|++||.|..+.+..+       ++|+|||+|+++++|++|++.|||  
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG--   81 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG--   81 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT--
T ss_pred             CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC--
Confidence            3456788887  3333        35789999999999998888542       579999999999999999999999  


Q ss_pred             hhhcCccCC
Q psy1630         141 REFQNKESK  149 (149)
Q Consensus       141 ~~~~g~~ik  149 (149)
                      +.|+||+|+
T Consensus        82 ~~f~GR~i~   90 (105)
T 3v4m_A           82 RKFANRVVV   90 (105)
T ss_dssp             CEETTEECE
T ss_pred             CEeCCCEEE
Confidence            799999874

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.37  E-value=5e-14  Score=101.15  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|+++|.+..+.+.    ..++|||||+|+++++|++|+ .+++  ..+.|++|+
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~   84 (175)
T 1fje_B           11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTG--LKVFGNEIK   84 (175)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGG--EEETTEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCC--CEeCCeEEE
Confidence            457899999999999999999999999865432221    237899999999999999999 4888  799998763

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.35  E-value=4.8e-14  Score=94.84  Aligned_cols=64  Identities=17%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             eecCCCCCcHHHHHhhh------------CCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          84 LREIPDSTPLEEIRGLF------------SGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        84 v~~lp~~~t~~~l~~~F------------~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      +.|||+.+++++|++.|            ++||.|..+.+..+    ++|||||+|+++++|++|++.|||  +.|+||+
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng--~~~~Gr~   97 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN--RWFNGQP   97 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT--CEETTEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC--CEECCEE
Confidence            45666677777776666            99999998888543    589999999999999999999999  7999999


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus        98 i~   99 (104)
T 1jmt_A           98 IH   99 (104)
T ss_dssp             CC
T ss_pred             EE
Confidence            85

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.32  E-value=1.2e-12  Score=89.93  Aligned_cols=70  Identities=13%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             ceeEEEeecCC--CC---CcHHHHHhhhCCCCCCceeeeeee---------ecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          78 KRCIVILREIP--DS---TPLEEIRGLFSGKSCPRFISCEFA---------HNNSWYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        78 ~~~tl~v~~lp--~~---~t~~~l~~~F~~~G~v~~v~~~~~---------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      +.++|++.|+-  .+   -.+++|++.|++||.|..+.+..+         .+|++||+|+++++|++|++.|||  +.|
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG--r~f   96 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG--RWF   96 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC--CEE
Confidence            56788899883  22   247899999999999998887542         359999999999999999999999  799


Q ss_pred             cCccCC
Q psy1630         144 QNKESK  149 (149)
Q Consensus       144 ~g~~ik  149 (149)
                      +||+|+
T Consensus        97 ~GR~i~  102 (118)
T 3ue2_A           97 AGRKVV  102 (118)
T ss_dssp             TTEECE
T ss_pred             CCcEEE
Confidence            999874

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.31  E-value=7e-13  Score=106.29  Aligned_cols=64  Identities=8%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             CceeEEEeec--CCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          77 HKRCIVILRE--IPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        77 ~~~~tl~v~~--lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      .+.++|||+|  |+..+|+++|+++|++||.|..|.+.. .||||||+|++.++|++|++.|||  +++
T Consensus        16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG--~~~   81 (345)
T 3tht_A           16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNG--KEV   81 (345)
T ss_dssp             SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred             CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--Ccc
Confidence            4567899998  578999999999999999998887754 789999999999999999999999  555

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=87.04  Aligned_cols=57  Identities=9%  Similarity=-0.025  Sum_probs=49.6

Q ss_pred             CCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          89 DSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        89 ~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+|+++|+++|++||.|..+.+...++|||||+|+++++|++|++.+    ..+.|++|+
T Consensus        27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~----~~~~g~~l~   83 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE----VGLVDNPLK   83 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC----CBCSSSBCE
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc----CCCCCCeEE
Confidence            568999999999999999998887678999999999999999999863    356788763

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.26  E-value=2.1e-12  Score=88.24  Aligned_cols=69  Identities=14%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             eeEEEeecC--CCC--------CcHHHHHhhhCCCCCCceeeeeee-ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREI--PDS--------TPLEEIRGLFSGKSCPRFISCEFA-HNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~l--p~~--------~t~~~l~~~F~~~G~v~~v~~~~~-~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .+.|.+.|+  |.+        -.+++|++.|++||.|..+.+.+. .+|+|||+|+++++|++|++.|||  +.|+||+
T Consensus         7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG--~~f~GR~   84 (114)
T 3s6e_A            7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG--RWFAGKM   84 (114)
T ss_dssp             CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTT--CEETTEE
T ss_pred             CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEE
Confidence            345777776  222        135689999999999999888654 589999999999999999999999  7999998


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus        85 i~   86 (114)
T 3s6e_A           85 IT   86 (114)
T ss_dssp             CE
T ss_pred             EE
Confidence            74

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.21  E-value=7.5e-12  Score=86.37  Aligned_cols=70  Identities=20%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEec-cHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFEN-DEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~-~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +.+.|+|+|+|.+ ++.++|+++|++||.|.+|.+..+.. .|||+|.+ +++|.+|++.++..+.+++|..+
T Consensus        17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~   88 (121)
T 1owx_A           17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEV   88 (121)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred             CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence            5688999999999 99999999999999999998865433 69999999 79999999998765567777543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.74  E-value=6e-09  Score=77.79  Aligned_cols=57  Identities=12%  Similarity=0.048  Sum_probs=50.2

Q ss_pred             CcHHHHHhhhCCCCCCceeeeee---------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          91 TPLEEIRGLFSGKSCPRFISCEF---------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        91 ~t~~~l~~~F~~~G~v~~v~~~~---------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      -.+++|++.|++||.|..+.+..         .++|++||+|++.++|++|++.|||  +.|+||+|.
T Consensus       141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g--r~~~gr~i~  206 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG--RWFAGRKVV  206 (222)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC--ceECCeEEE
Confidence            46788999999999998887742         3679999999999999999999999  799999983

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.2e-09  Score=69.44  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             ceeEEEeecCCC----CC-c---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPD----ST-P---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~----~~-t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.-||.|.-.|.    .. +   ..+|.+.|++||.|..+++.   .+.+||+|++.++|.+|++ |||  .++.||.||
T Consensus         6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~---~d~~fVtF~d~~sAlaAi~-mnG--~~v~Gr~Lk   79 (91)
T 2dnr_A            6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV---EDKMWVTFLEGSSALNVLS-LNG--KELLNRTIT   79 (91)
T ss_dssp             SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC---SSSEEEEESSHHHHHHGGG-GTT--CEETTEEEE
T ss_pred             CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe---cCCEEEEECChHHHHHHHh-cCC--eEeCCeEEE
Confidence            445788877762    22 2   36799999999987777663   3559999999999999998 999  799999875

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=1.4e-08  Score=66.69  Aligned_cols=67  Identities=10%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CceeEEEeecCCCC-----C-c---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          77 HKRCIVILREIPDS-----T-P---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        77 ~~~~tl~v~~lp~~-----~-t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      ++.-||.|.-++.+     . +   ..+|.+.|++||.|..+++..+   -+||+|.+.++|.+|++ |||  ..+.||.
T Consensus        13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG--~~v~Gr~   86 (95)
T 1ufw_A           13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDG--MKVKGRA   86 (95)
T ss_dssp             CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGG--SEETTEE
T ss_pred             CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCC--eeeCCeE
Confidence            35678999888643     2 2   2568999999998888877443   39999999999999998 999  7999998


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus        87 L~   88 (95)
T 1ufw_A           87 VK   88 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.43  E-value=5.9e-08  Score=65.36  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCceeEEEeecCCCCCcHHHHHhhhCCC-----CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          76 NHKRCIVILREIPDSTPLEEIRGLFSGK-----SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~-----G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +...+||-+-|+|..++.+.|+.+..++     |.+.-+-+.. .-|-|+|+|++...|-+|--.|+|  .+|+||.|+
T Consensus        18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G--~ef~gr~Lr   93 (117)
T 2l9w_A           18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNG--SQFQGKVIR   93 (117)
T ss_dssp             TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSS--EEETTEEEE
T ss_pred             ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCC--eeecCeEEE
Confidence            3457899999999999999999999999     8766655544 356699999999999999999999  799999874

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=97.78  E-value=6.2e-05  Score=49.65  Aligned_cols=54  Identities=15%  Similarity=0.258  Sum_probs=44.8

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLR  137 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~  137 (149)
                      ..+++ ++|+.+...+|..+|+.||   .+.+.--...+|||.|.+++.|..|+..++
T Consensus         7 HV~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            7 HVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred             eEEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence            34555 9999999999999999999   344433457899999999999999998774

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=97.76  E-value=9.4e-05  Score=48.66  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .+++ ++|+.+...+|..+|+.||.+..-.+   ...+|||.|.+++.|..|+..++.
T Consensus        18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~k   71 (100)
T 1whv_A           18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY   71 (100)
T ss_dssp             EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhccc
Confidence            4555 99999999999999999995443333   568999999999999999988764

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.00091  Score=44.35  Aligned_cols=53  Identities=19%  Similarity=0.173  Sum_probs=42.9

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCC---C--CCCceeeeeeeecCeeEEEEeccHHHHHHHH
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSG---K--SCPRFISCEFAHNNSWYITFENDEDAQKAYR  134 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~---~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~  134 (149)
                      .++|.|.|+|.+++++.|+-.|+.   -  |++..+..  .. +.|+|+|.+.+.|++.++
T Consensus         8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-~~AvItF~d~~va~rVL~   65 (104)
T 2dhx_A            8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-CGGVLTFREPADAERVLA   65 (104)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-TEEEEEESSHHHHHHHHT
T ss_pred             ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-CcEEEEEcChHHHHHHhc
Confidence            357999999999999999999987   2  34554443  23 899999999999999875

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=97.01  E-value=0.00012  Score=60.51  Aligned_cols=56  Identities=9%  Similarity=-0.033  Sum_probs=43.2

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHH
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY  133 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai  133 (149)
                      ...|+|+|. .|...++.+|.+.|++||.|..+.+-....-||.|||.+.+++..++
T Consensus        51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~  106 (464)
T 3pq1_A           51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ  106 (464)
T ss_dssp             HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred             HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence            357899998 79999999999999999999998886666679999999999998664

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.94  E-value=0.00045  Score=45.92  Aligned_cols=68  Identities=24%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             eeEEEeecCCCCC----c-HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDST----P-LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~----t-~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||+|.|+|.++    . .+.++++|..++....-.. .++-.=.-|.|.++++|.+|=..|++  ..|.|++||
T Consensus         5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~--~~f~g~~~r   77 (104)
T 1wey_A            5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHK--TEFLGKEMK   77 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTT--SEETTEECE
T ss_pred             CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhcc--ceecCceeE
Confidence            4689999998754    2 2678999999996554322 12222367999999999999999998  689998774

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.85  E-value=0.0025  Score=41.30  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=47.6

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A--HNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      +.|.|+.||+..|++++.+.++..+...+..-..     +  .-.-|||.|.+.|++..-.+.++|  ..|.+
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g--~~F~D   72 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG--YVFLD   72 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT--CEEEC
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEEEc
Confidence            3589999999999999999999886433222111     1  224499999999999998888877  46644

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=95.60  E-value=0.016  Score=39.26  Aligned_cols=63  Identities=17%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ..+-|.|-|+|.. ..+.|-..|++||.|...... .......|.|+++.+|++|+.. ||  ..+.|
T Consensus        23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~k-NG--~ii~g   85 (119)
T 1wwh_A           23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSK-DG--RIFGE   85 (119)
T ss_dssp             GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHTT-TT--CEETT
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHHh-CC--eEecC
Confidence            4567889999987 477888899999976654432 2457789999999999999853 44  45554

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=94.96  E-value=0.022  Score=37.27  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeee-e----ee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISC-E----FA--HNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-~----~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ..|.|+.||+..|++++.+.++..-...+..- +    .+  .-.-|||.|.++|+...-.+..+|  ..|.+
T Consensus        10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g--~~F~D   80 (97)
T 2l08_A           10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG--YIFLD   80 (97)
T ss_dssp             CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT--EEEEC
T ss_pred             eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--cEEEe
Confidence            45899999999999999988886432111110 0    01  224499999999998887776666  45543

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=94.03  E-value=0.07  Score=44.49  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      +++.++|..+...+|.++|+.+|.+..   ..-...+|||.|.+++.|..+++.++.
T Consensus       442 vl~v~f~~~~~~~~i~~~fs~fg~v~V---~widdt~a~V~~~~~~~a~~~l~~~~~  495 (507)
T 3d45_A          442 VLHVTFPKEWKTSDLYQLFSAFGNIQI---SWIDDTSAFVSLSQPEQVQIAVNTSKY  495 (507)
T ss_dssp             EEEEECCTTCCHHHHHHHGGGGCCCEE---EECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcCCEEE---EEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence            555569999999999999999995443   333667899999999999999988865

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=93.29  E-value=0.045  Score=37.72  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=43.0

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee------------------eecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF------------------AHNNSWYITFENDEDAQKAYRYLREDV  140 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~------------------~~kg~afVeF~~~e~A~~Ai~~l~~~~  140 (149)
                      .-|.|-|+|++. ...|-+.|++||.|.. ..+..                  ...+...|+|+++.+|++|+.   .++
T Consensus         8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~---~NG   83 (132)
T 3p3d_A            8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL---ENG   83 (132)
T ss_dssp             CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT---TTT
T ss_pred             eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH---hCC
Confidence            457778998764 4567778999997654 21110                  124567899999999999984   333


Q ss_pred             hhhcCc
Q psy1630         141 REFQNK  146 (149)
Q Consensus       141 ~~~~g~  146 (149)
                      ..|.|.
T Consensus        84 ~ii~G~   89 (132)
T 3p3d_A           84 AVFNGV   89 (132)
T ss_dssp             CEETTE
T ss_pred             eEeCcE
Confidence            677663

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=86.05  E-value=0.22  Score=32.56  Aligned_cols=76  Identities=8%  Similarity=0.060  Sum_probs=29.1

Q ss_pred             hhhhhhhcCCCcee-eeEEeechhhhhhh----chhhhHHHHHHhhCCCcccccccccccC--------------CCcee
Q psy1630          20 DAYLLSQMDNDQYV-PIWTVANFNQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRP--------------NHKRC   80 (149)
Q Consensus        20 d~~l~~~~~~~g~v-pi~~~~~F~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr--------------~~~~~   80 (149)
                      +.-|++.+..-|-| .+.++..-++-+.+    -.+.+....|++.....++.....+|..              .....
T Consensus        19 e~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~   98 (115)
T 4f25_A           19 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT   98 (115)
T ss_dssp             HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-------------
T ss_pred             HHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCC
Confidence            34566666666653 55555432221222    2467788888876555455433333321              01345


Q ss_pred             EEEeecCCCCCcHHH
Q psy1630          81 IVILREIPDSTPLEE   95 (149)
Q Consensus        81 tl~v~~lp~~~t~~~   95 (149)
                      +|||+|||+++|++.
T Consensus        99 ~lyv~Nl~~~~T~~a  113 (115)
T 4f25_A           99 NVYIKNFGPGSTRAA  113 (115)
T ss_dssp             ---------------
T ss_pred             ceEeCCCCCCccccc
Confidence            799999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d2cqka1	88	a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Hu	2e-28
d1zh5a1	99	a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal	5e-20
d1s29a_	92	a.4.5.46 (A:) Lupus La autoantigen N-terminal doma	6e-20
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.001
d2cq2a1	101	d.58.7.1 (A:25-125) Alkylation repair AlkB homolog	0.001
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	0.003
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	0.003
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	0.003

>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: La-related protein 4 LARP4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (245), Expect = 2e-28
 Identities = 48/69 (69%), Positives = 57/69 (82%)

Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
           RENL+ D YL+SQMD+DQ++PIWTVAN  ++KKLT D  LI EVLR SP VQVDE+G K
Sbjct: 20 SRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 79

Query: 73 VRPNHKRCI 81
          VRP+HKRCI
Sbjct: 80 VRPSHKRCI 88

>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (190), Expect = 5e-20
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 13 CRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEE 69
             NL  D +L  Q+  ++ +VP+  +  FN++ +LT D  +I E L +S    +++ E+
Sbjct: 22 GDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 81

Query: 70 GIKVRPNHKRCIVILREIPDST 91
            K+R +        + +P+ T
Sbjct: 82 KTKIRRSPS------KPLPEVT 97

>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

 Score = 76.7 bits (189), Expect = 6e-20
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 13 CRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG 70
             N+  D +L  +M  + + +V + T+  F +V  +T D+K + E +R S  + + E+G
Sbjct: 23 SDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDG 82

Query: 71 IKVRPNH 77
          + VR   
Sbjct: 83 LMVRRRD 89

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 82  VILREIPDSTPLEEIRGLFSG----KSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
           +++  +       +I+ LF+     K              +  + FE   DA KA +  
Sbjct: 3   LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 8/75 (10%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 63  NVQVDEEGIKVRPNHKRCIVILR-EIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYI 121
           +  +  EGI+      + +V+    + +     ++  +         +     +    + 
Sbjct: 3   HTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFA 61

Query: 122 TFENDEDAQKAYRYL 136
            +   E++++AY  L
Sbjct: 62  RYRTTEESKRAYVTL 76

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 33.1 bits (75), Expect = 0.003
 Identities = 11/69 (15%), Positives = 28/69 (40%)

Query: 68  EEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDE 127
           E+    +       ++ + +  +   +E++ +F      R +S +       YI F+++ 
Sbjct: 5   EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 64

Query: 128 DAQKAYRYL 136
           DA+K     
Sbjct: 65  DAEKNLEEK 73

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 78  KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
           +R  + +  +P     EE+R LF  K                +I  E    A+ A   L
Sbjct: 7   QRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 64

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 78  KRCIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKA 132
           K   + +  +P +   +++  +F   G    + I  +          ++ +   E+AQ+A
Sbjct: 5   KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64

Query: 133 YRYL 136
              L
Sbjct: 65  ISAL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2cqka1	88	La-related protein 4 LARP4 {Human (Homo sapiens) [	99.97
d1s29a_	92	Lupus La autoantigen N-terminal domain {Trypanosom	99.97
d1zh5a1	99	Lupus La autoantigen N-terminal domain {Human (Hom	99.96
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.77
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.76
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.75
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.75
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.75
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.74
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.74
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.74
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.74
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.74
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.74
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.73
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.73
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.73
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.73
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.73
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.73
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.72
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.72
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.72
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.72
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.72
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.72
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.71
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.71
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.71
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.71
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.71
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.71
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.71
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.7
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.7
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.7
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.7
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.7
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.7
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.7
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.7
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.7
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.69
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.69
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.69
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.69
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.69
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.69
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.69
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.68
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.68
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.68
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.67
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.67
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.67
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.67
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.67
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.67
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.66
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.66
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.66
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.66
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.66
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.66
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.65
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.65
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.65
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.65
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.64
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.62
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.62
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.62
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.62
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.61
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.59
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.59
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.58
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.57
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.49
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.47
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.46
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.42
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.41
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.39
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.36
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.27
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.23
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.97
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	96.72
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	95.36
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	94.41
d1wfxa_	180	Probable RNA 2'-phosphotransferase KptA {Aeropyrum	81.24

>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: La-related protein 4 LARP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-33  Score=182.75  Aligned_cols=78  Identities=62%  Similarity=0.957  Sum_probs=74.8

Q ss_pred             ccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCcee
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRC   80 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~   80 (149)
                      .|++||||||||+||++|.||+++|+++|||||+++++||||++|+.|++.|.+||+.|+.|+|++|+.+|||+++++
T Consensus        10 ~i~~QvEfYFSd~NL~~D~fL~~~m~~~G~V~l~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~~d~~~VRr~~~r~   87 (88)
T d2cqka1          10 CLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRC   87 (88)
T ss_dssp             HHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEECCSCC
T ss_pred             HHHHHHHhhCCHhhhCcCHHHHHhhcCCCCEEhHHHhcChHHHHHcCCHHHHHHHHhcCCeEEEeCCCCEeccCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999987643

>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.97  E-value=5.9e-33  Score=181.79  Aligned_cols=75  Identities=24%  Similarity=0.433  Sum_probs=72.2

Q ss_pred             ccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCC
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH   77 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~   77 (149)
                      .|++||||||||+||++|.||+++|  +++|||||++|++|+|||+|+.|.+.|.+||+.|+.|+|++||.+|||+.
T Consensus        13 ~I~~QvEfYFSd~NL~~D~fL~~~m~~~~~G~V~i~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRRk~   89 (92)
T d1s29a_          13 KLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRD   89 (92)
T ss_dssp             HHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESS
T ss_pred             HHHHHHHHHccHhhhccCHHHHHHHhccCCCcEEhHHHhcCcCHHHhcCCHHHHHHHHhhCCeEEEeCCCCEEeeCC
Confidence            4889999999999999999999999  58999999999999999999999999999999999999999999999875

>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: Lupus La autoantigen N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-31  Score=177.30  Aligned_cols=76  Identities=25%  Similarity=0.436  Sum_probs=71.9

Q ss_pred             ccccccceeeccccccchhhhhhhcC-CCceeeeEEeechhhhhhhchhhhHHHHHHhhCC--CcccccccccccCCCc
Q psy1630           3 LTTYDLACVCCRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEEGIKVRPNHK   78 (149)
Q Consensus         3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~-~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~--~lev~~d~~~vrr~~~   78 (149)
                      .|++||||||||+||++|.||+++|+ ++|||||++|++|+|||+|+.|.+.|.+||+.|+  .|++++|+.+|||++.
T Consensus        12 ~I~~QvEfYFSd~NL~~D~fL~~~m~~~eG~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~S~~~~lev~~d~~~vRR~~~   90 (99)
T d1zh5a1          12 KICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPS   90 (99)
T ss_dssp             HHHHHHHHHTSTTTGGGCHHHHHHHTTTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEEECTT
T ss_pred             HHHHHHHHhcCHhhhccCHHHHHHHhcCCCcccHHHHhcchHHHHHcCCHHHHHHHHHhCCCCeEEEcCCCceeCCCCC
Confidence            58899999999999999999999999 6899999999999999999999999999999987  4999999999998754

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-19  Score=111.51  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||.++|+++|+++|++||.|..+.+..     .++|+|||+|+++++|++|++.|||  ..|+|+.||
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng--~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA--SGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH--HTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCC--CEECCEECc
Confidence            79999999999999999999999988776632     3789999999999999999999999  799999987

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.76  E-value=2.2e-19  Score=114.36  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+++.+     .++|||||+|+++++|++|++.|||  ..+.|++|+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng--~~~~g~~l~   75 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNKRLK   75 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            46899999999999999999999999988887743     4789999999999999999999999  799999874

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-19  Score=120.31  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+||||+|||.++|+++|+++|++||.|..|++..  .++|||||+|++.++|..|++.|+|  ..|.|++|+
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~~~gr~l~   77 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG--FNVCNRYLV   77 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            357999999999999999999999999999888754  4789999999999999999999999  799999874

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.5e-19  Score=117.15  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=62.4

Q ss_pred             ceeEEEeecCCCCCcHHHH---HhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          78 KRCIVILREIPDSTPLEEI---RGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l---~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+++|||+|||+++++++|   +++|++||.|..+.+..        .++|||||+|+++++|++|++.|||  ..++||
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng--~~~~gr   84 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN--VVVDGR   84 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--EEETTE
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCC--CEECCE
Confidence            3468999999999999999   78999999999888743        2458999999999999999999999  799999


Q ss_pred             cCC
Q psy1630         147 ESK  149 (149)
Q Consensus       147 ~ik  149 (149)
                      +||
T Consensus        85 ~lk   87 (89)
T d2cpia1          85 TLK   87 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-19  Score=114.69  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..|+||+|+
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~gr~i~   82 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIR   82 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCC--CEECCEEeE
Confidence            457899999999999999999999999988887743     3789999999999999999999998  799999874

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.8e-19  Score=113.11  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=62.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++|||+|||.++|+++|+++|++||.|..+++..     .++|||||+|.++++|++|++.|||  ..++|++|+
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~   75 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIK   75 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            35799999999999999999999999988887743     4789999999999999999999998  799999874

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.1e-19  Score=115.57  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+||||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.+|+  ..++|++|+
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~--~~i~g~~l~   78 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR   78 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            357999999999999999999999999999887743     4789999999999999999999998  699999873

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.1e-19  Score=112.85  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||||+|||+++|+++|+++|++||.+..+.+.     ..++|||||+|+++++|++|++.|||  ..++|++|+
T Consensus         1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~i~   74 (81)
T d2ghpa1           1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG--LKIEGYTLV   74 (81)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            3799999999999999999999999998765442     24789999999999999999999999  799999874

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=6.6e-19  Score=115.15  Aligned_cols=73  Identities=23%  Similarity=0.329  Sum_probs=64.1

Q ss_pred             CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHH-HHHhhhhcCcc
Q psy1630          75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYL-REDVREFQNKE  147 (149)
Q Consensus        75 r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l-~~~~~~~~g~~  147 (149)
                      ++.+.++|||+|||+++++++|+++|++||.|..+++..      .++|||||+|+++++|++|++.| ++  ..+.|++
T Consensus         4 ~~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~--~~~~Gr~   81 (94)
T d2cpha1           4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS--THLYGRR   81 (94)
T ss_dssp             CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC--CBSSSCB
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCC--cEECCEE
Confidence            445567899999999999999999999999998888732      36899999999999999999998 56  6899998


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus        82 l~   83 (94)
T d2cpha1          82 LV   83 (94)
T ss_dssp             CE
T ss_pred             EE
Confidence            74

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.5e-19  Score=113.91  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+.++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.|+|  ..++|++|+
T Consensus         5 ~~~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~   81 (90)
T d2cq0a1           5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYDHLILN   81 (90)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEETTEECE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            34668999999999999999999999999998887743     3789999999999999999999998  799999874

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=8e-19  Score=117.42  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+||||+|||.++++++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|||  ..|.|++|+
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~-~kg~afV~f~~~~~A~~A~~~lng--~~~~gr~l~   77 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAY--SKFHHVPLY   77 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCccEEEeec-cCceEEEEEcCHHHHHHHHHHHcC--CccCCCeEE
Confidence            357999999999999999999999999998887753 789999999999999999999999  799999873

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.9e-19  Score=115.57  Aligned_cols=70  Identities=20%  Similarity=0.321  Sum_probs=63.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+||||+|||+++|+++|+++|+++|.|..+.+..     .++|||||+|.++++|+.|++.|||  ..++|++|+
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~gr~i~   80 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLDDRIIR   80 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            457999999999999999999999999998888743     3789999999999999999999998  799999874

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-18  Score=114.95  Aligned_cols=70  Identities=7%  Similarity=0.034  Sum_probs=62.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++.|||  ..+.||+++
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng--~~i~gr~~~   90 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG--KFIKTPPGV   90 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT--CCCCCCTTS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCC--CEECCcCCc
Confidence            457899999999999999999999999987776643    3689999999999999999999999  799999874

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.1e-18  Score=112.78  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+++..     .++|||||+|++.++|++|++.|||  ..++|++|+
T Consensus         5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng--~~l~g~~l~   80 (88)
T d1rk8a_           5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMGQTIQ   80 (88)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            3568999999999999999999999999998888754     3789999999999999999999998  799999874

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.1e-18  Score=111.04  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|++.++|++|++.|||  ..++|++|+
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~-~k~~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~   75 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDN--MPLRGKQLR   75 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTT--CCBTTBCCE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeec-ccceEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            45799999999999999999999999999888754 689999999999999999999998  799999874

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.73  E-value=1.6e-18  Score=110.70  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh-cCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF-QNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-~g~~ik  149 (149)
                      ++.+||||+|||.++|+++|+++|++||.+..+++..+.+|+|||+|++.++|+.|++.|+|  ..+ +|++|+
T Consensus         6 pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~~i~   77 (83)
T d2b0ga1           6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG--FKITPTHAMK   77 (83)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTT--CBSSTTCBCE
T ss_pred             CCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHHhCC--cEeCCCcEEE
Confidence            45679999999999999999999999999988888666789999999999999999999998  577 567774

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.3e-19  Score=112.86  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=59.5

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .|||+|||+++|+++|+++|++||.|..+.+.  .+|||||+|+++++|++|++.|+|  ..|.|+.|+
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~i~   66 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKLDN--TKFRSHEGE   66 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEEC--TTSEEEEEESSHHHHHHHHHHHTT--CBCCCTTSC
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhccccccccc--ccceeeEEeCCHHHHHHHHHHhCC--CEECCcEeE
Confidence            59999999999999999999999988777653  569999999999999999999999  799999875

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.1e-18  Score=110.24  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |.|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++ +++  ..++||+|+
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~--~~i~Gr~i~   72 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSR--HELDSKTID   72 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTT--CCCSSCCCE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCC--CEECCeEEE
Confidence            5799999999999999999999999998888743     378999999999999999997 566  799999873

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=7.7e-19  Score=111.04  Aligned_cols=67  Identities=13%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .|||+|||+++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++.+||  ..+.|++|+
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~l~   72 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLDGRPMN   72 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            489999999999999999999999998888753    3789999999999999999999998  799999884

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.72  E-value=2.3e-18  Score=110.41  Aligned_cols=69  Identities=10%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC--ccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN--KESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++||.|..+++..     .++|||||+|+++++|++|++.+|+  ..+.|  ++|+
T Consensus         6 ~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~~l~   81 (85)
T d1b7fa2           6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN--VIPEGGSQPLS   81 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CCCTTCSSCCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCC--CEeCCCCeEEE
Confidence            45799999999999999999999999998888753     3789999999999999999999998  67776  7763

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.3e-19  Score=111.92  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|||+|||+++|+++|+++|++||+|..+++..     .++|||||+|.++++|+.|++.|+|  ..+.|++|+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g--~~~~gr~i~   73 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIKGKPVR   73 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTT--CEETTEECE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            699999999999999999999999998888754     3689999999999999999999998  799999885

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-18  Score=112.57  Aligned_cols=70  Identities=14%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.|++  ..|.|++|+
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~--~~~~g~~l~   78 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG--KSVDGRQIR   78 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT--CCTTSCCCE
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            346799999999999999999999999998876532     3789999999999999999999998  799999874

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.3e-19  Score=113.70  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.+||||+|||.++|+++|+++|++||.|..+.+..   ..+|||||+|++.++|++|++.++|  ..+.|++|+
T Consensus         6 ~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~   79 (90)
T d2cqia1           6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG--RKILGKEVK   79 (90)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            3457999999999999999999999999988887743   3689999999999999999999998  689999874

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-18  Score=113.52  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.+||||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|.++++|++|++.|++  ..+.|++|+
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   82 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IKLYGKPIR   82 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CBCSSCBCE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            347999999999999999999999999988877633     4789999999999999999999998  799999884

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.5e-18  Score=111.17  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=60.0

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||+++|+++|+++|++||.|..+.+..        .++|||||+|+++++|++|++.+|+  ..++|++|+
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~--~~~~g~~i~   74 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HTVDGHKLE   74 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CEETTEECE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            79999999999999999999999998887743        2589999999999999999999998  799999873

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3e-18  Score=109.98  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .++|||+|||.++|+++|+++|++||.|..+++..     .++|||||+|+++++|++|++.|||  ..+.|+.
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng--~~~~G~~   77 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG--QKPSGAT   77 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CCCTTCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCC--CEeCCCC
Confidence            46799999999999999999999999998888743     3789999999999999999999999  6898854

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.6e-18  Score=112.03  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..   .++|||||+|+++++|++|++.|++  ..++|++|+
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~--~~~~g~~l~   82 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEGRKIE   82 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            356899999999999999999999999988887743   3789999999999999999999999  799999874

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-18  Score=115.13  Aligned_cols=69  Identities=20%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|.+.++|++|++.|++  ..+.|++|+
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~i~   81 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSGRALR   81 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSSSCBE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            46899999999999999999999999999888743     3789999999999999999999988  799999874

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-18  Score=115.88  Aligned_cols=69  Identities=12%  Similarity=0.175  Sum_probs=63.1

Q ss_pred             eeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+ .+|+++|+++|++||.|..+.+..+.+|+|||+|+++++|++|++.|++  ..+.|++|+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng--~~l~g~~l~   71 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR   71 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            36899999965 6999999999999999999998777899999999999999999999998  799999884

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.6e-18  Score=113.82  Aligned_cols=68  Identities=12%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||||+|||.++|+++|+++|++||.|..+++..     .++|||||+|+++++|++|++ |||  ..|.|++|+
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g--~~~~G~~l~   90 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTG--QRLLGVPII   90 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTT--EEETTEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCC--CEECCEEEE
Confidence            57999999999999999999999999998888743     379999999999999999995 888  799999873

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.1e-18  Score=109.40  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|+|||+|+++++|++|++.+++.+..+.|++|+
T Consensus         6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~-~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~   77 (88)
T d2cq1a1           6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY   77 (88)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcccccccccccc-cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEE
Confidence            3568999999999999999999999999988877653 68999999999999999999998866789999874

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=9e-18  Score=110.56  Aligned_cols=68  Identities=15%  Similarity=0.299  Sum_probs=62.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++++++|+++|++||.|..+.+.  .+|||||+|.++++|++|++.||+  ..|+|+.|+
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~lng--~~~~g~~i~   81 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ--KDGMGMVEYLRKEDMEYALRKLDD--TKFRSHEGE   81 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE--TTTEEEEEESSHHHHHHHHHHHSS--EEEECTTSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhccccccccc--ccceEEEEECCHHHHHHHHHHhCC--CEeCCeEEE
Confidence            45689999999999999999999999988877664  579999999999999999999999  799999885

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.9e-18  Score=112.12  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+.+..  ..+|||||+|+++++|+.|++.||+  ..|.|++|+
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g--~~~~g~~l~   84 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGYRLR   84 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            467899999999999999999999999988877643  4789999999999999999999998  799999874

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.3e-18  Score=112.60  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++.||+  ..|+|++|+
T Consensus         7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g--~~~~gr~i~   81 (99)
T d1whwa_           7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQGRMLH   81 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESSSCEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            356799999999999999999999999988887743     3789999999999999999999998  799999874

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-18  Score=113.47  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=63.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||+++|+++|+++|++||.+..+.+..     .++|||||+|+++++|+.|++.|||  ..|.|++|+
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng--~~~~g~~i~   91 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIGMKRLK   91 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence            456899999999999999999999999988877643     3789999999999999999999998  799999874

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.70  E-value=1.5e-18  Score=113.77  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|+++|+++|.+..++....++|||||+|++.++|++|++.|++  ..++|++|+
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~gr~i~   84 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVS   84 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHHcCC--CEECCEEEE
Confidence            35679999999999999999999999998877765556899999999999999999999998  799999874

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.5e-18  Score=108.28  Aligned_cols=70  Identities=21%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhh-cCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREF-QNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-~g~~ik  149 (149)
                      +.+||||+|||.++|+++|+++|++||.+..+.+.. ..+|+|||+|+++++|.+|+..|+|  ..+ +|++|+
T Consensus         9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~i~~g~~l~   80 (88)
T d2adca2           9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN--HDLGENHHLR   80 (88)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTT--CBSSSSCBCE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccC--CEecCCCEEE
Confidence            457999999999999999999999999886655432 4689999999999999999999998  566 688874

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.9e-19  Score=114.59  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+|||+|||+++|+++|+++|++||.|..+.+..   .++|||||+|+++++|++|++.|||  ..+.|++|+
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~   79 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF   79 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSE--EEETTEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            34799999999999999999999999988777643   3689999999999999999999998  799999874

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-18  Score=112.89  Aligned_cols=69  Identities=19%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++|+++|+++|++||.|..+++.. .+|||||+|+++++|++|+..|+|  ..+.|++|+
T Consensus        17 ~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~-~kg~afV~f~~~~~A~~Ai~~l~~--~~i~g~~l~   85 (96)
T d1x4ga1          17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNG--TTIEGHVVK   85 (96)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEe-cceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            457899999999999999999999999998888765 599999999999999999999998  799999875

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-18  Score=109.42  Aligned_cols=68  Identities=13%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||.++|+++|+++|++||.|....+. ..+|||||+|.++++|++|++.|||. ..++|++|+
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-~~rg~aFV~f~~~~~A~~Ai~~lng~-~~~~G~~i~   69 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGK-VELHGKIME   69 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTT-CEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe-cccceEEEEECCHHHHHHHHHHhCCC-eEECCEEEE
Confidence            469999999999999999999999988765553 37899999999999999999999983 358999874

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-18  Score=110.49  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|+++|.|..+.+..    .++|||||+|+++++|++|++ +++  ..|+|++|+
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~-~~~--~~~~g~~l~   77 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPG--QKYKETDLL   77 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT-CCC--CEETTEECE
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHH-HCC--CEECCEEEE
Confidence            46899999999999999999999999998888854    368999999999999999996 466  799999873

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-18  Score=108.30  Aligned_cols=67  Identities=21%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||+++|+++|+++|++||.+..+.+. .++|||||+|.++++|.+|+..|+|  ..++|++|+
T Consensus         9 k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~--~~i~g~~i~   75 (86)
T d2cpda1           9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNG--KVLDGSPIE   75 (86)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSS--EEETTEEEE
T ss_pred             CEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCC--CEECCEEEE
Confidence            589999999999999999999999998877764 4899999999999999999999998  799999874

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.5e-18  Score=107.31  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=59.8

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .||||+|||+++++++|+++|++||.|..+++..   ..+|+|||+|+++++|++|+. +++  +.|+|++|.
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~-~~~--~~i~g~~i~   70 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTH--KVVGQNEII   70 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTT--CEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHH-hcC--cEECCEEEE
Confidence            4899999999999999999999999999888854   356899999999999999985 677  799999873

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.2e-18  Score=110.03  Aligned_cols=67  Identities=16%  Similarity=0.382  Sum_probs=58.6

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++|| ++.+.+. ..+|||||+|+++++|++|++.||+  ..++|++|+
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~-~~kg~afV~f~~~~~A~~Ai~~ln~--~~~~G~~l~   71 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKDLI   71 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcC-ceeeeee-ccCCceEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            46899999999999999999999999 3334333 4799999999999999999999999  799999874

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.2e-18  Score=107.51  Aligned_cols=67  Identities=12%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ++|||+|||+++|+++|+++|++||.+..+.+..     .++|+|||+|.++|+|++|++ +++  ..++||+|+
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~--~~l~Gr~i~   74 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKY--HTVNGHNCE   74 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSC--CEETTEECE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHH-hCC--CEECCEEEE
Confidence            5799999999999999999999999988777643     378999999999999999985 677  799999874

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.9e-18  Score=106.18  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++ +++  ..++|++|.
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~--~~l~Gr~i~   71 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKE--HKLNGKVID   71 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCC--CCBTTBCCE
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCC--CEECCCEEE
Confidence            89999999999999999999999998887743     378999999999999999997 566  689999873

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.1e-18  Score=108.54  Aligned_cols=67  Identities=7%  Similarity=0.080  Sum_probs=61.4

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .|||+|||+++|+++|+++|++||+|..+++..     .++|||||+|.++++|+.|++.+++  ..+.|++|+
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~--~~l~g~~l~   74 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGDKKLL   74 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSS--CCCSSSCCE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            599999999999999999999999998888743     3689999999999999999999998  799999874

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-17  Score=104.89  Aligned_cols=66  Identities=20%  Similarity=0.151  Sum_probs=60.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||||+|+|  +|+++|+++|++||.|..+.+.. .+|||||+|+++++|.+|++.|||  ..++|++|+
T Consensus         5 ~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~-~~~~afV~f~~~~~A~~Ai~~lng--~~~~g~~l~   70 (79)
T d2bz2a1           5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNG--TQVESVQLK   70 (79)
T ss_dssp             CCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred             CCEEEEECCC--CCHHHHHHHHhccCccceeeecc-CCCEEEEEEcccHHHHHHHHHhCC--CEECCEEEE
Confidence            4699999996  89999999999999999887754 689999999999999999999998  799999874

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.2e-17  Score=104.81  Aligned_cols=64  Identities=17%  Similarity=0.378  Sum_probs=56.5

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||.++|+++|+++|++|| +..+... ..+|+|||+|+++++|++|++.|||  ..++|++|+
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~-~~~g~afv~f~~~~~A~~Ai~~ln~--~~~~g~~l~   64 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-KYKGTAFVTLLNGEQAEAAINTFHQ--SRLRERELS   64 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTT--EESSSCEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeec-ccceeEEEEECCHHHHHHHHHHhCC--ccCCCCEEE
Confidence            79999999999999999999999 3333332 4899999999999999999999998  799999874

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.4e-18  Score=108.61  Aligned_cols=68  Identities=12%  Similarity=0.081  Sum_probs=60.3

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|.++++|++|++ +++  ..++|++|+
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~--~~i~Gr~i~   78 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARP--HKVDGRVVE   78 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCS--CEETTEECE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCC--CEECCEEEE
Confidence            46899999999999999999999999998888743     379999999999999999996 466  689999874

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.3e-17  Score=105.71  Aligned_cols=70  Identities=19%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...+|||+|||+++++++|+++|+.+|.+.. +.+..    .++|+|||+|+++++|++|++.+|+  ..+.||+|+
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~--~~l~gr~i~   82 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGSRKVK   82 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCC--CEECCEEEE
Confidence            4567999999999999999999999998764 34432    4789999999999999999999999  799999984

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.5e-18  Score=111.95  Aligned_cols=67  Identities=10%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|++.++|++|++ +++  ..|+|++|
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~--~~l~G~~i   91 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARP--HSIDGRVV   91 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCS--EEETTEEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHH-hCC--CeECCEEE
Confidence            47899999999999999999999999999998854     378999999999999999996 566  68999887

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.1e-17  Score=104.46  Aligned_cols=65  Identities=18%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||.++|+++|+++|++||.+..+.+..     .++|+|||+|+++++|++|++ +|+  ..++||+|+
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~--~~l~gr~i~   71 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF--HEINNKMVE   71 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSS--CCBTTBCCE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCC--CEECCeEEE
Confidence            89999999999999999999999988877632     378999999999999999996 887  799999884

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.1e-18  Score=106.96  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=58.0

Q ss_pred             EEeecCCCCCcHHHHHhhhCCCCCCce-eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          82 VILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        82 l~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |||+|||.++|+++|+++|++||.+.. +.+..     .++|||||+|+++++|++|++.+++  ..++|++|+
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g--~~~~gr~l~   72 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG--QYLCNRPIT   72 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT--CEETTEECE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCC--cEECCEEEE
Confidence            799999999999999999999998754 34422     3789999999999999999999998  799999874

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.4e-17  Score=108.14  Aligned_cols=72  Identities=10%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.++|||+|||.++|+++|.++|++||.|..+.+.+ .+|+|||+|+++++|+.|+..+++.+..+.|++|+
T Consensus        13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~-~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~   84 (104)
T d1wexa_          13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF   84 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEe-cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEE
Confidence            3567999999999999999999999999988887743 78999999999999999999998865567898874

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.2e-18  Score=110.04  Aligned_cols=69  Identities=19%  Similarity=0.288  Sum_probs=59.4

Q ss_pred             ceeEEEeecCCCCCc-HHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTP-LEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t-~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +.++|||+|||.++| +++|+++|++||.|..+++..      .++|||||+|++.++|++|++ +|+  ..++|++|+
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~--~~~~gr~l~   78 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNR--SLLGNREIS   78 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTT--EEETTEEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCC--CEECCEEEE
Confidence            357899999999976 566999999999998887632      368999999999999999996 888  799999874

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.3e-18  Score=112.14  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++.+++   .+.||+|+
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~---~l~Gr~l~   82 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKAN   82 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETTEECE
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC---cCCCEEEE
Confidence            45799999999999999999999999998888743     3789999999999999999998764   68998873

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.3e-17  Score=106.74  Aligned_cols=73  Identities=16%  Similarity=0.070  Sum_probs=64.3

Q ss_pred             CCceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          76 NHKRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+.++|||+|||.. +|+++|.++|++||.|..+.+.. .+++|||+|++.++|+.|++.+++++..++|++|+
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~-~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~   78 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR   78 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec-cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEE
Confidence            346789999999986 88999999999999998887744 67899999999999999999998865679999884

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-17  Score=108.74  Aligned_cols=70  Identities=14%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceee--------eee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFIS--------CEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQ  144 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~--------~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~  144 (149)
                      +.++|||+|||.++|+++|+++|++||.+....        +..     .++|||||+|+++++|.+|++.|+|  ..|+
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~   84 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG--KDFQ   84 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT--CEET
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCC--CEEC
Confidence            457999999999999999999999999865322        111     3679999999999999999999999  7999


Q ss_pred             CccCC
Q psy1630         145 NKESK  149 (149)
Q Consensus       145 g~~ik  149 (149)
                      ||+|+
T Consensus        85 gr~i~   89 (101)
T d2cpea1          85 GSKLK   89 (101)
T ss_dssp             TEECE
T ss_pred             CEEEE
Confidence            99884

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-18  Score=109.44  Aligned_cols=67  Identities=15%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||+++|+++|+++|++||.|..+.+...++|||||+|+++++|++|+.  ++  ..++|++|+
T Consensus         5 s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~--~~--~~i~g~~l~   71 (88)
T d1wf0a_           5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--ED--LIIKGISVH   71 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CE--EEETTEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHh--CC--CEECCEEeE
Confidence            57899999999999999999999999999888877789999999999999999985  44  689998763

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.3e-17  Score=107.40  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=62.9

Q ss_pred             ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||.+ +|+++|.++|++||.|..+.+.. .+|+|||+|+++++|.+|++.++.++..|.|++|+
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~-~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~   88 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK   88 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEee-cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEE
Confidence            4579999999985 89999999999999999888753 68999999999999999999887765689999874

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.6e-17  Score=108.58  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=60.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHH----hhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLRED----VREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~----~~~~~g~~i  148 (149)
                      +.+||||+|||+++|+++|+++|++||.+..+.+..     .++|||||+|.++++|++|++.+++.    +..++||+|
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l   86 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL   86 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEE
Confidence            457899999999999999999999999877766632     37899999999999999999998742    245777766


Q ss_pred             C
Q psy1630         149 K  149 (149)
Q Consensus       149 k  149 (149)
                      +
T Consensus        87 ~   87 (98)
T d1x4ha1          87 K   87 (98)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-17  Score=109.79  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             CceeEEEeecCC-CCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIP-DSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp-~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...++|||+||| ..+++++|+++|++||.|..+.+   ++|||||+|+++++|++|++.||+  ..+.|++|+
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i---~rg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~   81 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAGEDG--RMIAGQVLD   81 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE---ETEEEEEEESSHHHHHHHHHTTTT--CEETTEECE
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE---eCCeEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            345679999997 56788899999999999888776   689999999999999999999998  799999874

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.66  E-value=9.1e-18  Score=116.67  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+|||.++|+++|+++|++||.|..+.+..     .++|||||+|.+.++|++|++.||+  ..|+||+|+
T Consensus        42 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng--~~~~gr~l~  115 (139)
T d1u6fa1          42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--FNILNKRLK  115 (139)
T ss_dssp             TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--EECSSCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            46899999999999999999999999998887743     3789999999999999999999998  799999874

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-17  Score=107.59  Aligned_cols=69  Identities=14%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             eeEEEeecCCCCCcHHHHHh----hhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRG----LFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~----~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+||||+|||+++|+++|++    +|++||.|..+.+..  .++|+|||+|+++++|++|++.++|  ..+.|++|+
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~--~~~~g~~l~   77 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMR   77 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            47999999999999999864    689999988877753  4789999999999999999999998  689999873

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.6e-17  Score=108.25  Aligned_cols=69  Identities=13%  Similarity=0.032  Sum_probs=59.6

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhc--CccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQ--NKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~--g~~i  148 (149)
                      +-.+|+|+|||+++|+++|+++|++||.|..+.+.. ..+|+|||+|+++++|++|++.|++  ..+.  |+.|
T Consensus         6 ~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~--~~l~~~~~~l   77 (108)
T d2adba1           6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG--QNIYNACCTL   77 (108)
T ss_dssp             CEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHS--CCSSTTCCCC
T ss_pred             CeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCC--CEeccCCcEE
Confidence            446799999999999999999999999998877754 4689999999999999999999999  5664  4444

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-17  Score=107.33  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=58.5

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|.++++|++|++.  +  ..++|+.|
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~--~--~~l~Gr~i   78 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R--HMIDGRWC   78 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C--EEETTEEE
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhc--C--CccCCEEe
Confidence            456899999999999999999999999998888754     3789999999999999999973  3  47888876

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.65  E-value=5.7e-18  Score=110.09  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..++|||+|||+++|+++|+++|++||.|..+.+..    .++|||||+|+++++|++|++ +++  ..+.|++|+
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~~g--~~~~g~~i~   84 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG--LKVFGNEIK   84 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG--EEETTEEEE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-cCC--cEECCEEEE
Confidence            457899999999999999999999999876655522    378999999999999999996 888  799999874

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-17  Score=109.33  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .+.+||||+|||.++|+++|+++|++||.+..+.+..     .++|||||+|.++++|++|++.|+|  ..+.|++|+
T Consensus        16 ~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g--~~~~g~~l~   91 (102)
T d2cpxa1          16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG--YKLYGKILV   91 (102)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT--CBCSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCC--CEECCEEEE
Confidence            3567999999999999999999999999887766532     3789999999999999999999998  799999884

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-17  Score=104.12  Aligned_cols=65  Identities=20%  Similarity=0.295  Sum_probs=56.9

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      .|||+|||+++|+++|+++|++||.|..+.+..     .++|||||+|+++++|++|++. ++  ..++|+.|
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~-~~--~~i~g~~i   70 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY--HNVGLSKC   70 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTC-SS--CCBTTBCC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhh-CC--CEECCEEe
Confidence            389999999999999999999999998887743     3789999999999999999964 33  57888876

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-16  Score=105.48  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ...+|||+|||+++|+++|+++|+.+|.+ .+.+..    ..+|||||+|+++++|++|++ +|+  ..++||.|+
T Consensus        14 ~~~~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~~--~~i~gR~I~   85 (102)
T d1weza_          14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK--ANMQHRYVE   85 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS--CCSSSSCCE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHH-cCC--CEECCEEEE
Confidence            44689999999999999999999999854 444432    378999999999999999986 787  799999874

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-16  Score=105.74  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=57.5

Q ss_pred             CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee------eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE------FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~------~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+.++|||+|||+++|+++|+++|++|| +..+.+.      ..++|||||+|+++++|++|+ .+++  ..++||+|+
T Consensus        12 ~~p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~--~~~~gr~l~   87 (104)
T d1wi8a_          12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESLGNKRIR   87 (104)
T ss_dssp             SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CEETTEECE
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCC--CEECCEEEE
Confidence            34668999999999999999999999999 4433331      136899999999999998776 4887  799999874

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-16  Score=103.36  Aligned_cols=67  Identities=18%  Similarity=0.144  Sum_probs=60.1

Q ss_pred             CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630          77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK  146 (149)
Q Consensus        77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~  146 (149)
                      .+.++|||+|||.++|+++|+++|++||.|..+++.. .+++|||+|++.++|++|++.|++  ..+.|+
T Consensus        15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~-~~~~afV~f~~~~~A~~A~~~l~~--~~i~g~   81 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRG--FPLGGP   81 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTT--CBCSSS
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeec-cccEEEeccCCHHHHHHHHHHhCC--CEeCCC
Confidence            4568999999999999999999999999988777643 589999999999999999999998  688775

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.8e-17  Score=106.37  Aligned_cols=71  Identities=15%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCC-Cceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSC-PRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +|.|||+|||.++|+++|+++|+++|+ +..+.+..      .++|||||+|+++++|..|++.|++....+.|++|+
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~   78 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA   78 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEE
Confidence            378999999999999999999999996 66676632      368999999999999999999998754456788774

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-17  Score=107.33  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----------eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----------FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----------~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      |.|||+|||.++|+++|+++|+++|.+..+.+.          ..++|||||+|+++|+|++|++ |||  ..++|++|+
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g--~~~~Gr~l~   78 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDG--IIFQGQSLK   78 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSS--CCSSSSCCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCC--cEECCEEEE
Confidence            679999999999999999999999976654331          1378999999999999999985 888  799999985

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-16  Score=105.09  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=58.5

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      ..+|||+|||+++|+++|+++|+.+|.+.. +.+..    .++|+|||+|+++++|++|++ +++  ..|+||+|.
T Consensus         8 ~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~--~~i~gr~i~   80 (103)
T d2cpya1           8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHR--KKLNGREAF   80 (103)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCS--EEETTEEEE
T ss_pred             ceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCC--CeECCcEEE
Confidence            457999999999999999999999998764 44422    479999999999999999996 777  799999873

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-16  Score=102.85  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=57.9

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      +..+|+|+|||+++|+++|+++|+++|.+.. +.+.    ..++|+|||+|+++++|++|++ +++  ..|+||.|.
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~--~~i~gR~i~   87 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHK--ERIGHRYIE   87 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTT--CCSSSSCCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCC--CEEcceEEE
Confidence            4557999999999999999999999997654 2332    1478999999999999999986 777  689999873

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-16  Score=103.79  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee-eee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI-SCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v-~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      ..++|||+|||+++|+++|+++|+.+|.+... .+.    ..++|+|||+|.+.++|++|++ +|+  ..++||+|
T Consensus        17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~--~~i~gR~i   89 (112)
T d1wela1          17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK--QYMGNRFI   89 (112)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS--BCSTTSCB
T ss_pred             CCeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCC--CcCCCEEE
Confidence            46689999999999999999999999987643 222    1478999999999999999986 788  68999987

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=97.27  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=58.2

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEecc-HHHHHHHHHHHHHhhhhcCccC
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFEND-EDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~-e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      -.++||+|||.++|+++|+++|++||+|..|.+.. .+|||||+|+++ ++|..|+..+++  ..+.++.+
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~-~kg~gfV~F~~~~~~A~~a~~~~~~--~~l~~~~~   78 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANN--GNLQLRNK   78 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTT--SCBCTTSS
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEEec-CCceEEEEecCcHHHHHHHHHHhcC--CceecCce
Confidence            35679999999999999999999999999998864 689999999997 689999999988  56666554

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-15  Score=98.40  Aligned_cols=63  Identities=8%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             ceeEEEee--cCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630          78 KRCIVILR--EIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF  143 (149)
Q Consensus        78 ~~~tl~v~--~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~  143 (149)
                      +.++++|.  |||.++|+++|+++|++||.+..+.+.. .+|||||+|++.++|++|++.|||  +.+
T Consensus        17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~-~k~~aFV~f~~~e~A~~A~~~lng--~~i   81 (101)
T d2cq2a1          17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNG--KEV   81 (101)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred             CCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeecc-CccEEEEEECCHHHHHHHHHHhCC--CCC
Confidence            44577774  5999999999999999999998887754 689999999999999999999998  454

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4.5e-15  Score=98.46  Aligned_cols=68  Identities=22%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             eeEEEeecCCCCC-c----HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          79 RCIVILREIPDST-P----LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        79 ~~tl~v~~lp~~~-t----~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|||+||+.++ +    .++|+++|++||.|..+++. ..+|+|||+|+++++|.+|++.|||  ..|.|++|+
T Consensus         5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~-k~~~~afV~f~~~~~A~~Ai~~lng--~~~~g~~l~   77 (104)
T d1weya_           5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHK--TEFLGKEMK   77 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTT--SEETTEECE
T ss_pred             CceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEe-cCCCEEEEEECCHHHHHHHHHHhcc--cccCCCEeE
Confidence            4689999999875 3    35699999999998877664 4789999999999999999999999  799999874

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-15  Score=100.73  Aligned_cols=67  Identities=21%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|.+++.++++|+++++|++||.|..+.+..    .++|+|||+|+++++|.+|++.|||  +.|+||+|+
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng--~~~~gr~i~   99 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN--RWFNGQPIH   99 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT--CEETTEECC
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCC--CEECCEEEE
Confidence            366777888889999999999999999888743    3789999999999999999999999  799999985

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.1e-14  Score=91.09  Aligned_cols=64  Identities=16%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                      .+.|+|.|+|++.+++.+ +.|++||+|..+++. ..+|||||+|+++++|++|++ +||  ..++|+.
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~~-~~~~~~fV~f~~~~~A~~Al~-~nG--~~~~g~~   67 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDG--RIFGESI   67 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTT--CEETTTE
T ss_pred             ccEEEEECCChHHHHHHH-HHHHhhhhhheEEec-CCCCEEEEEEcccHHHHHHHh-cCC--CeECCcE
Confidence            456999999999886555 579999988777654 368999999999999999996 888  7998875

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-14  Score=101.57  Aligned_cols=131  Identities=12%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             ccccc---hhhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCccccccccccc----------
Q psy1630          15 ENLAN---DAYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVR----------   74 (149)
Q Consensus        15 ~Nl~~---d~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vr----------   74 (149)
                      .||+.   +.-|++.+..-|-| .+.++....  +-+.+    -.+.+....|+...... +......++          
T Consensus        12 ~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~   90 (183)
T d1u1qa_          12 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK-VDGRVVEPKRAVSREDSQR   90 (183)
T ss_dssp             ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCE-ETTEECEEEECCCTTGGGS
T ss_pred             ECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCc-ccccchhhhhhhhcccccc
Confidence            35554   45577777766654 555543221  22221    34667777777764321 111111111          


Q ss_pred             --CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630          75 --PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE  147 (149)
Q Consensus        75 --r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~  147 (149)
                        .....++|+|+|||..+|+++|+++|+.||.|..+.+..     .++|+|||+|+++++|++|++ +++  ..+.|++
T Consensus        91 ~~~~~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~--~~~~G~~  167 (183)
T d1u1qa_          91 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKY--HTVNGHN  167 (183)
T ss_dssp             TTTTCCCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSC--EEETTEE
T ss_pred             cccccccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCC--CeECCEE
Confidence              112457899999999999999999999999998887743     378999999999999999997 566  5789987


Q ss_pred             CC
Q psy1630         148 SK  149 (149)
Q Consensus       148 ik  149 (149)
                      |+
T Consensus       168 i~  169 (183)
T d1u1qa_         168 CE  169 (183)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-13  Score=90.79  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             ceeEEEeecC--CCCC---------cHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          78 KRCIVILREI--PDST---------PLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        78 ~~~tl~v~~l--p~~~---------t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      ..++|+++|+  |.+.         ..++|++.|++||.|..+.+.. .++|+|||+|+++++|++|+..|||  ..|+|
T Consensus         7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng--~~~~g   84 (99)
T d2dita1           7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDG--RWFGG   84 (99)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTT--CEETT
T ss_pred             CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCC--cEECC
Confidence            4578999998  6542         2468999999999999888754 4689999999999999999999999  79999


Q ss_pred             ccCC
Q psy1630         146 KESK  149 (149)
Q Consensus       146 ~~ik  149 (149)
                      |+|+
T Consensus        85 r~i~   88 (99)
T d2dita1          85 RQIT   88 (99)
T ss_dssp             EECE
T ss_pred             EEEE
Confidence            9874

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6e-13  Score=94.86  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=51.4

Q ss_pred             eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHH
Q psy1630          80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLR  137 (149)
Q Consensus        80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~  137 (149)
                      |+|||+|||+++|+++|+++|++||.|..+.+..     .++|+|||+|.++++|++|+....
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~   69 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP   69 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcC
Confidence            6899999999999999999999999988777642     478999999999999999987543

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.3e-13  Score=86.87  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             ceeEEEeecC--CCCC--------cHHHHHhhhCCCCCCceeeeeee-------ecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630          78 KRCIVILREI--PDST--------PLEEIRGLFSGKSCPRFISCEFA-------HNNSWYITFENDEDAQKAYRYLREDV  140 (149)
Q Consensus        78 ~~~tl~v~~l--p~~~--------t~~~l~~~F~~~G~v~~v~~~~~-------~kg~afVeF~~~e~A~~Ai~~l~~~~  140 (149)
                      +.++|.+.|+  |...        ..++|++.|++||.|..+.+.+.       ..|++||+|+++++|.+|+..|+|  
T Consensus         3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~G--   80 (104)
T d1o0pa_           3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG--   80 (104)
T ss_dssp             CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSS--
T ss_pred             CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCC--
Confidence            3467888998  5543        35679999999999998887531       358999999999999999999999  


Q ss_pred             hhhcCccCC
Q psy1630         141 REFQNKESK  149 (149)
Q Consensus       141 ~~~~g~~ik  149 (149)
                      +.|+||+|+
T Consensus        81 r~f~gR~v~   89 (104)
T d1o0pa_          81 RKFANRVVV   89 (104)
T ss_dssp             CCSSSSCCE
T ss_pred             CEECCeEEE
Confidence            799999984

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00091  Score=41.86  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=47.6

Q ss_pred             EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630          81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A--HNNSWYITFENDEDAQKAYRYLREDVREFQN  145 (149)
Q Consensus        81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g  145 (149)
                      .|.|+.||+..|++++.+.++..|...+..-..     +  .-.-|||.|.++++...-.+..+|  ..|.+
T Consensus         3 KvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g--~~F~D   72 (91)
T d1uw4a_           3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG--YVFLD   72 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT--CEEEC
T ss_pred             eEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCC--cEEEc
Confidence            589999999999999999999877654433211     1  123499999999999888877777  46544

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.003  Score=39.88  Aligned_cols=58  Identities=19%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630          78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE  138 (149)
Q Consensus        78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~  138 (149)
                      .+.-||.-.+|......+|..+|+.||.|..-.+   ...+|||...+.|+|+.+++.++.
T Consensus        14 ~RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~VswI---ddTSa~V~L~~~e~~~~v~~~~~~   71 (100)
T d1whva_          14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY   71 (100)
T ss_dssp             CCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred             CcceeEEEeCCcccchhHHHHHhcCCCceEEEEe---cCceEEEEecCHHHHHHHHHHhcc
Confidence            3445999999999999999999999998765444   456899999999999999876654

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0036  Score=38.94  Aligned_cols=51  Identities=10%  Similarity=0.168  Sum_probs=38.6

Q ss_pred             HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630          93 LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK  149 (149)
Q Consensus        93 ~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik  149 (149)
                      .++|.+.|++||+|..|+.   ..+..+|+|.+-..|-+|++ +++  .++.|+.|+
T Consensus        38 ~~~Llq~l~~~GeViLvRF---v~d~mwVTF~dG~SAL~al~-l~g--~~v~G~~l~   88 (95)
T d1ufwa_          38 RTELMQTLGSYGTIVLVRI---NQGQMLVTFADSHSALSVLD-VDG--MKVKGRAVK   88 (95)
T ss_dssp             HHHHHHHHHHHSCCSEEEE---ETTEEEEECSCSHHHHHHHH-GGG--SEETTEEEE
T ss_pred             HHHHHHHHhhCCeEEEEEE---eCCeEEEEECCcHHHHHHhc-cCC--eEEcceEEE
Confidence            3457778899998776654   55678999999999888874 555  788887663

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0058  Score=36.17  Aligned_cols=53  Identities=15%  Similarity=0.096  Sum_probs=43.0

Q ss_pred             HHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630          94 EEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES  148 (149)
Q Consensus        94 ~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i  148 (149)
                      +-|.+.|+++|.|..+.+..  +..-.|-|...+..+|+-|+..|+.  ..+.++.|
T Consensus        11 q~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR--~KiG~KRI   65 (73)
T d2dgxa1          11 QLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR--YKIGSKKI   65 (73)
T ss_dssp             HHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT--EEETTEEE
T ss_pred             HHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHH--HhcCCeEE
Confidence            44677899999988877632  4556699999999999999999987  68887765

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.24  E-value=0.21  Score=34.40  Aligned_cols=47  Identities=11%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             cCCCceeeeEEeechhhhhhhc-hhhhHHHHHHhhCCC--cccccccccccC
Q psy1630          27 MDNDQYVPIWTVANFNQVKKLT-KDIKLITEVLRESPN--VQVDEEGIKVRP   75 (149)
Q Consensus        27 ~~~~g~vpi~~~~~F~kvk~l~-~d~~~i~~al~~S~~--lev~~d~~~vrr   75 (149)
                      |+++|||+++.++...+.+.+. .+.+.+.+.....+.  .+++++  +||-
T Consensus        22 ~d~~G~v~v~dLl~~~~~~~~~~~~~~~i~~iV~~d~K~Rfel~~~--~IRA   71 (180)
T d1wfxa_          22 LTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDPKGRYELRNG--EIRA   71 (180)
T ss_dssp             CCTTCCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT--EEEE
T ss_pred             cCCCCCEEHHHHHHHHHHcCCCcCcHHHHHHHHhcCCcccceecCC--EEEe
Confidence            5689999999999777666553 456677777777654  455443  4653