Psyllid ID: psy16327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990----
Protein Sequence
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNEGIRARSRPPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEcccccEEEEcccccccEEEccccccccHHHHHHEEEEHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHcccccccHHHHHHHccccccccccccccEEEEccccccccccEEcccccccccccccEEEEEEcccccEEEEEEccccccccccEEEEEEccccEEEEEEEcccccccccEEEEEEEEcccccccccccccEEEEEEEccccccccccccEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHcccHHHHccEEEEEEccccccccccHHHHHHHHHHccccccccccEEEEcccccEEEEcccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHcccHHHHHHHHHHHHccccccccEEEEEEEEEEcccEEEEEcccccccccccccHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccEEEEEEEEEcHHHcccEEEEEEccccccEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHccccccHHHHHHcEEEEccccccHHHHHHHHHHccHHHcccEEcccccccccccccEEEEEEccccccEEEEEccccccccccEEEEEEccccEEEEEEEEcccccHHHccEEEEEEHHHHHHcccccccccEEEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEcccccccccccccccccccEEEEccccEEEEEEccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccEcccccccccccccccccccccccccEEEEccccEEEEEEccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHcccHHHHHcEEEEEEcccccccccHHHHHHHHHHHHHHccHHHccEEEcccccccEEEcHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHcEEEEcccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTtknmrfdfyprlmtewrmtrGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNtyqpkwneeftvggqgggllkpnpyielyvdyknpkttrvvkntyqpkwneeftvlvspYSIILFRLldhrtfrrdctigekrLNIYGVLAHYNGKCEHLEITLDLmndsrvspplmsvemppllrnntphaasplaqantdVVVSHRSVLnegirarsrppgsentacpppphhnhsspsisssqqqHTQVsngavqctsssssssaalppidlaqeagasggttspraaqsnglppalppeeplppgweirqdtygrryyvdhntrssswerpqplppgwelrrdprgrvyyvdhntrsttwqrpnserLQHFKHWQGERAhvvsqgsqrflypqhgvgvssssavsfstgvteedadtygrryyvdhntrssswerpqplppgwelrrdprgrvyyvdhntrsttwqrpnserLQHFKHWQGERAhvvsqgsqrflypqhgvgvssssavsfstgvteeddalgslpsgwerrvqpdgrvyfvnhknrttqwedprtqgqeigqigadepplppgweirytedgtryfvdhntrsttfedprpgvpkdqkgaygvpkaYERSFRWKLSQFRYLchhnvlpshiKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGeegldyggvsREWFFLLSHEVLNPMYCLFeyanknnyslqinpasyvnpdhlLYFKFIGRFIAMALYHgrfiysgftmPFYKRMLNKKLVmkdiesidpefynslvwirdnnidecglELYLSVDFEILGQVIHHELKengdkirvCEENKEEYMRwygsgssceraivrrepvcfsslpghavfpwedlpnsWRFCIEKvgkdtwlprshtcfnrldlppyksyDQMVEKLNYAIEETEGFGQE
Flexible Loop (DISEMBL)
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKklcfttknmrfdfyPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYrhytrnskqttrvvkntyqpkwneeftvggqggglLKPNPYIELYvdyknpkttrVVKNtyqpkwneeftvlvspySIILFRLLDHRTFRrdctigekrlniYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNegirarsrppgsENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDhntrssswerpqplppgwelrrdprGRVYYVDHntrsttwqrpnseRLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVssssavsfstgvteedadtygRRYYVdhntrssswerpqplppgwelrrdprGRVYYVDHntrsttwqrpnseRLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTeeddalgslpsgwerrvqpdGRVYFVNhknrttqwedprtqGQEIgqigadepplppGWEIRYTEDGTRYFVDHNtrsttfedprpgvpkdqkgaygvpKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHhelkengdkirVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGhavfpwedlpnSWRFCIEKVgkdtwlprshtcfnrldlppykSYDQMVEKLNYAIEETEGFGQE
Low Complexity Region (SEG)
MEMTDDHYQLAQIIEIWKLIAKealsnvvvsnevvkklCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNEGIRARSRPPGSENTACpppphhnhsspsisssqqqhtqvsNGAVQCTsssssssAALPPIDLAQEAGASGGTTSPRAAQSNGlppalppeeplppGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHgvgvssssavsfstgvTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHgvgvssssavsfstgvTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE
Disordered region (IsUnstruct)
******HYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLM**********************************************************************************************************************************************WEIRQDTYGRRYYVD*************************GRVYYVDHNTRSTTW*******LQHFKHWQGERAHVVSQGSQRFLYPQHGVG*******************TYGRRYYVD*************************GRVYYVDHNTRSTTW*******LQHFKHWQGERAHVVSQGSQRFLYPQHG***********************************DGRVYFVNHK****************************GWEIRYTEDGTRYFVDH********************AYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAI*********
Disordered Region (DISOPRED)
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPK*****KNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WERRVQPDGRVYFVNHKNRT*******************************TEDGTRYFVDHNTR************************YERSFRWKLSQFR*************ITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG**
Disordered Region (DISEMBL)
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNEGIR*****************************************************LPPIDLAQEA****************LPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQH*******************DADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQH***********************GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE
Disordered Region (DISPRO)
**MTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNT*******************************************************************************************************************PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP*******PRGRVYY**HNTR************************************************SFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFK*W*GER*HV***********************************LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNEGIRARSRPPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	994	2.2.26 [Sep-21-2011]
Q9Y0H4	949	E3 ubiquitin-protein liga	yes	N/A	0.412	0.432	0.813	0.0
Q8BZZ3	918	NEDD4-like E3 ubiquitin-p	yes	N/A	0.401	0.434	0.653	1e-166
Q9DBH0	870	NEDD4-like E3 ubiquitin-p	no	N/A	0.391	0.447	0.661	1e-165
O00308	870	NEDD4-like E3 ubiquitin-p	yes	N/A	0.391	0.447	0.664	1e-165
Q9H0M0	922	NEDD4-like E3 ubiquitin-p	no	N/A	0.401	0.432	0.648	1e-159
Q8C863	864	E3 ubiquitin-protein liga	no	N/A	0.406	0.467	0.590	1e-150
Q96J02	903	E3 ubiquitin-protein liga	no	N/A	0.406	0.447	0.588	1e-149
Q92462	767	E3 ubiquitin-protein liga	yes	N/A	0.379	0.491	0.476	6e-98
P39940	809	E3 ubiquitin-protein liga	yes	N/A	0.383	0.470	0.441	4e-96
P46934	1319	E3 ubiquitin-protein liga	no	N/A	0.506	0.381	0.371	5e-93

>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 370/418 (88%), Gaps = 8/418 (1%)

Query: 488 DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           D YGRRYYVDHNTRS+ WE+P PLPPGWE+R+D RGRVYYVDHNTR TTWQRPNSERL H
Sbjct: 374 DQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMH 433

Query: 548 FKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED-DALGSLPSGWERRVQ 606
           F+HWQG+RAHVVSQG+QR+LY Q           + +  VT++D DALG LP GWE+++Q
Sbjct: 434 FQHWQGQRAHVVSQGNQRYLYSQQ-----QQQPTAVTAQVTQDDEDALGPLPDGWEKKIQ 488

Query: 607 PDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRS 666
            D RVYFVNHKNRTTQWEDPRTQGQE+  I  +E PLPPGWEIRYT  G R+FVDHNTR 
Sbjct: 489 SDNRVYFVNHKNRTTQWEDPRTQGQEVSLI--NEGPLPPGWEIRYTAAGERFFVDHNTRR 546

Query: 667 TTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED 726
           TTFEDPRPG PK  KG YGVP+AYERSFRWKLSQFRYLC  N LPSHIKITV RQTLFED
Sbjct: 547 TTFEDPRPGAPKGAKGVYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITVTRQTLFED 606

Query: 727 SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY 786
           SYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY
Sbjct: 607 SYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY 666

Query: 787 SLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 846
           SLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL +KDIE+I
Sbjct: 667 SLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETI 726

Query: 847 DPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           DPEFYNSL+W++DNNIDECGLEL+ SVDFE+LGQ+IHHELKENG+K RV EENKEEY+
Sbjct: 727 DPEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYI 784

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Down-regulates Notch/N signaling pathway, probably by promoting Notch ubiquitination, endocytosis and degradation. Involved in wing growth and leg joint formation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2

 Score =  585 bits (1508), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/424 (65%), Positives = 327/424 (77%), Gaps = 25/424 (5%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E+  D +GR YYVDHNTR+++WERPQPLPPGWE R D RGRVYYVDHNTR+TTWQRP  E
Sbjct: 352 EQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTME 411

Query: 544 RLQHFKHWQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSG 600
            +++F+ WQ +R  +   + Q +QR+LY               ++ +  E+D  G LP G
Sbjct: 412 SVRNFEQWQSQRNQLQGAMQQFNQRYLYS--------------ASMLAAENDPYGPLPPG 457

Query: 601 WERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFV 660
           WE+RV    RVYFVNH  +TTQWEDPRTQG        +E PLP GWEIRYT +G RYFV
Sbjct: 458 WEKRVDSTDRVYFVNHNTKTTQWEDPRTQGL------PNEEPLPEGWEIRYTREGVRYFV 511

Query: 661 DHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVAR 720
           DHNTR+TTF+DPR G     KG  G   AYERSFRWKL+ FRYLC  N LPSH+KI V+R
Sbjct: 512 DHNTRTTTFKDPRNGKSSVTKG--GPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSR 569

Query: 721 QTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEY 780
           QTLFEDS+ Q+M L  Y+LRRRLY+IFRGEEGLDYGG++REWFFLLSHEVLNPMYCLFEY
Sbjct: 570 QTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEY 629

Query: 781 ANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVM 840
           A KNNY LQINPAS +NPDHL YF FIGRFIAMAL+HG+FI +GF++PFYKRML+KKL +
Sbjct: 630 AGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTI 689

Query: 841 KDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENK 900
           KD+ESID EFYNSL+WIRDNNI+ECGLE+Y SVD EILG+V  H+LK  G  I V EENK
Sbjct: 690 KDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENK 749

Query: 901 EEYM 904
           +EY+
Sbjct: 750 DEYI 753

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates ERBB4 isoforms JM-A CYT-1 and JM-B CYT-1, KLF2, KLF5 and TP63 and promotes their proteasomal degradation. Ubiquitinates RNF11 without targeting it for degradation. Ubiquitinates and promotes degradation of TGFBR1; the ubiquitination is enhanced by SMAD7. Ubiquitinates SMAD6 and SMAD7.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=1 SV=1

 Score =  584 bits (1505), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/417 (66%), Positives = 328/417 (78%), Gaps = 28/417 (6%)

Query: 491 GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 550
           GR YYVDHNT++++WERP  LPPGWE R DPRGR YYVDHNTR+TTWQRP +E +++++ 
Sbjct: 314 GRVYYVDHNTKTTTWERP--LPPGWEKRTDPRGRFYYVDHNTRTTTWQRPTAEYVRNYEQ 371

Query: 551 WQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQP 607
           WQ +R  +   +   SQRFLY        SSSA       + + D LG LP GWE+R Q 
Sbjct: 372 WQSQRNQLQGAMQHFSQRFLY-------QSSSA-------STDHDPLGPLPPGWEKR-QD 416

Query: 608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRST 667
           +GRVY+VNH  RTTQWEDPRTQG         EP LPPGWE++YT +G RYFVDHNTR+T
Sbjct: 417 NGRVYYVNHNTRTTQWEDPRTQGM------IQEPALPPGWEMKYTSEGVRYFVDHNTRTT 470

Query: 668 TFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDS 727
           TF+DPRPG     K   G P AY+RSFRWK  QFR+LCH N LPSH+KI+V+RQTLFEDS
Sbjct: 471 TFKDPRPGFESGTK--QGSPGAYDRSFRWKYHQFRFLCHSNALPSHVKISVSRQTLFEDS 528

Query: 728 YHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 787
           + Q+M +  Y+LRRRLYII RGEEGLDYGG++REWFFLLSHEVLNPMYCLFEYA KNNY 
Sbjct: 529 FQQIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYC 588

Query: 788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID 847
           LQINPAS +NPDHL YF+FIGRFIAMALYHG+FI +GFT+PFYKRMLNK+  +KD+ESID
Sbjct: 589 LQINPASSINPDHLTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESID 648

Query: 848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           PEFYNS+VWI++NN++ECGLEL+   D EILG+V  HELKE G+ IRV EENKEEY+
Sbjct: 649 PEFYNSIVWIKENNLEECGLELFFIQDMEILGKVTTHELKEGGENIRVTEENKEEYI 705

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Polyubiquitinates POU5F1 by 'Lys-63'-linked conjugation and promotes it to proteasomal degradation; regulates POU5F1 protein level during differentiation of embryonal carcinoma cells (ECCs) but not in undifferentiated ECCs and embryonic stem cells (ESCs). Ubiquitinates EGR2 and promotes it to proteasomal degradation; in T-cells the ubiquitination inhibits activation-induced cell death. Ubiquitinates SLC11A2; the ubiquitination is enhanced by presence of NDFIP1 and NDFIP2. Ubiquitinates RPB1 and promotes it to proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/417 (66%), Positives = 328/417 (78%), Gaps = 28/417 (6%)

Query: 491 GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 550
           GR YYVDHNT++++WERP  LPPGWE R DPRGR YYVDHNTR+TTWQRP +E +++++ 
Sbjct: 314 GRVYYVDHNTKTTTWERP--LPPGWEKRTDPRGRFYYVDHNTRTTTWQRPTAEYVRNYEQ 371

Query: 551 WQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQP 607
           WQ +R  +   +   SQRFLY        SSSA       + + D LG LP GWE+R Q 
Sbjct: 372 WQSQRNQLQGAMQHFSQRFLY-------QSSSA-------STDHDPLGPLPPGWEKR-QD 416

Query: 608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRST 667
           +GRVY+VNH  RTTQWEDPRTQG         EP LPPGWE++YT +G RYFVDHNTR+T
Sbjct: 417 NGRVYYVNHNTRTTQWEDPRTQGM------IQEPALPPGWEMKYTSEGVRYFVDHNTRTT 470

Query: 668 TFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDS 727
           TF+DPRPG     K   G P AY+RSFRWK  QFR+LCH N LPSH+KI+V+RQTLFEDS
Sbjct: 471 TFKDPRPGFESGTK--QGSPGAYDRSFRWKYHQFRFLCHSNALPSHVKISVSRQTLFEDS 528

Query: 728 YHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 787
           + Q+M +  Y+LRRRLYII RGEEGLDYGG++REWFFLLSHEVLNPMYCLFEYA KNNY 
Sbjct: 529 FQQIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYC 588

Query: 788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID 847
           LQINPAS +NPDHL YF+FIGRFIAMALYHG+FI +GFT+PFYKRMLNK+  +KD+ESID
Sbjct: 589 LQINPASSINPDHLTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESID 648

Query: 848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           PEFYNS+VWI++NN++ECGLELY   D EILG+V  HELKE G+ IRV EENKEEY+
Sbjct: 649 PEFYNSIVWIKENNLEECGLELYFIQDMEILGKVTTHELKEGGESIRVTEENKEEYI 705

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Polyubiquitinates POU5F1 by 'Lys-63'-linked conjugation and promotes it to proteasomal degradation; in embryonic stem cells (ESCs) the ubiquitination is proposed to regulate POU5F1 protein level. Ubiquitinates EGR2 and promotes it to proteasomal degradation; in T-cells the ubiquitination inhibits activation-induced cell death. Ubiquitinates SLC11A2; the ubiquitination is enhanced by presence of NDFIP1 and NDFIP2. Ubiquitinates RPB1 and promotes it to proteasomal degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9H0M0|WWP1_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1

 Score =  563 bits (1452), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/424 (64%), Positives = 326/424 (76%), Gaps = 25/424 (5%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E+  D +GR YYVDHNTR+++WERPQPLPPGWE R D R RVYYVDHNTR+TTWQRP  E
Sbjct: 356 EQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRRRVYYVDHNTRTTTWQRPTME 415

Query: 544 RLQHFKHWQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSG 600
            +++F+ WQ +R  +   + Q +QR+LY               ++ +  E+D  G LP G
Sbjct: 416 SVRNFEQWQSQRNQLQGAMQQFNQRYLYS--------------ASMLAAENDPYGPLPPG 461

Query: 601 WERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFV 660
           WE+RV    RVYFVNH  +TTQWEDPRTQG +      +E PLP GWEIRYT +G RYFV
Sbjct: 462 WEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQ------NEEPLPEGWEIRYTREGVRYFV 515

Query: 661 DHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVAR 720
           DHNTR+TTF+DPR G     KG  G   AYER FRWKL+ FRYLC  N LPSH+KI V+R
Sbjct: 516 DHNTRTTTFKDPRNGKSSVTKG--GPQIAYERGFRWKLAHFRYLCQSNALPSHVKINVSR 573

Query: 721 QTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEY 780
           QTLFEDS+ Q+M L  Y+LRRRLY+IFRGEEGLDYGG++REWFFLLSHEVLNPMYCLFEY
Sbjct: 574 QTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEY 633

Query: 781 ANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVM 840
           A KNNY LQINPAS +NPDHL YF FIGRFIAMAL+HG+FI +GF++PFYKRML+KKL +
Sbjct: 634 AGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTI 693

Query: 841 KDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENK 900
           KD+ESID EFYNSL+WIRDNNI+ECGLE+Y SVD EILG+V  H+LK  G  I V EENK
Sbjct: 694 KDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENK 753

Query: 901 EEYM 904
           +EY+
Sbjct: 754 DEYI 757

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates ERBB4 isoforms JM-A CYT-1 and JM-B CYT-1, KLF2, KLF5 and TP63 and promotes their proteasomal degradation. Ubiquitinates RNF11 without targeting it for degradation. Ubiquitinates and promotes degradation of TGFBR1; the ubiquitination is enhanced by SMAD7. Ubiquitinates SMAD6 and SMAD7.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/425 (59%), Positives = 315/425 (74%), Gaps = 21/425 (4%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct: 294 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 353

Query: 544 RLQHFKHWQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSG 600
            +++++ WQ +R+ +   + Q +QRF+Y    +         F+T   +E D LG LP G
Sbjct: 354 SVRNYEQWQLQRSQLQGAMQQFNQRFIYGNQDL---------FATSQNKEFDPLGPLPPG 404

Query: 601 WERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFV 660
           WE+R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFV
Sbjct: 405 WEKRTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFV 458

Query: 661 DHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVAR 720
           DHN R+TT+ DPR G      G      AY R F+ K+  FR+ C    +P HIKITV R
Sbjct: 459 DHNRRATTYIDPRTGKSALDNGPQ---IAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTR 515

Query: 721 QTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEY 780
           +TLFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEY
Sbjct: 516 KTLFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEY 575

Query: 781 ANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVM 840
           A K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +
Sbjct: 576 AGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGL 635

Query: 841 KDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENK 900
           KD+ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENK
Sbjct: 636 KDLESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENK 695

Query: 901 EEYMR 905
           EEY+R
Sbjct: 696 EEYIR 700

Acts as an E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It catalyzes 'Lys-29'-, 'Lys-48'- and 'Lys-63'-linked ubiquitin conjugation. It is involved in the control of inflammatory signaling pathways. Is an essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, TAX1BP1 and RNF11, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of the complex after TNF stimulation. Once the complex is formed, TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NFKB1 (By similarity). Ubiquitinates RIPK2 by 'Lys-63'-linked conjugation and influences NOD2-dependent signal transduction pathways (By similarity). Regulates the transcriptional activity of several transcription factors involved in immune response. Critical regulator of T-helper (TH2) cytokine development through its ability to induce JUNB ubiquitination and degradation. Ubiquitinates SNX9 (By similarity). Ubiquitinates CXCR4 and HGS/HRS and regulates sorting of CXCR4 to the degradative pathway (By similarity). It is involved in the negative regulation of MAVS-dependent cellular antiviral responses. Ubiquitinates MAVS through 'Lys-48'-linked conjugation resulting in MAVS proteasomal degradation (By similarity). Involved in the regulation of apoptosis and reactive oxygen species levels through the ubiquitination and proteasomal degradation of TXNIP (By similarity). Mediates the antiapoptotic activity of epidermal growth factor through the ubiquitination and proteasomal degradation of p15 BID. Targets DTX1 for lysosomal degradation and controls NOTCH1 degradation, in the absence of ligand, through 'Lys-29'-linked polyubiquitination.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96J02|ITCH_HUMAN E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/425 (58%), Positives = 315/425 (74%), Gaps = 21/425 (4%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct: 333 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 392

Query: 544 RLQHFKHWQGERAHV---VSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSG 600
            +++++ WQ +R+ +   + Q +QRF+Y    +         F+T  ++E D LG LP G
Sbjct: 393 SVRNYEQWQLQRSQLQGAMQQFNQRFIYGNQDL---------FATSQSKEFDPLGPLPPG 443

Query: 601 WERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFV 660
           WE+R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFV
Sbjct: 444 WEKRTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFV 497

Query: 661 DHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVAR 720
           DHN R+TT+ DPR G      G      AY R F+ K+  FR+ C    +P HIKITV R
Sbjct: 498 DHNRRTTTYIDPRTGKSALDNGPQ---IAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTR 554

Query: 721 QTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEY 780
           +TLFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEY
Sbjct: 555 KTLFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEY 614

Query: 781 ANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVM 840
           A K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +
Sbjct: 615 AGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGL 674

Query: 841 KDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENK 900
           KD+ESIDPEFYNSL+W+++NNI+EC LE+Y SVD EILG++  H+LK NG  I V EENK
Sbjct: 675 KDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENK 734

Query: 901 EEYMR 905
           EEY+R
Sbjct: 735 EEYIR 739

Acts as an E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It catalyzes 'Lys-29'-, 'Lys-48'- and 'Lys-63'-linked ubiquitin conjugation. It is involved in the control of inflammatory signaling pathways. Is an essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, TAX1BP1 and RNF11, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of the complex after TNF stimulation. Once the complex is formed, TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NFKB1. Ubiquitinates RIPK2 by 'Lys-63'-linked conjugation and influences NOD2-dependent signal transduction pathways. Regulates the transcriptional activity of several transcription factors, and probably plays an important role in the regulation of immune response. Ubiquitinates NFE2 by 'Lys-63' linkages and is implicated in the control of the development of hematopoietic lineages. Critical regulator of T-helper (TH2) cytokine development through its ability to induce JUNB ubiquitination and degradation (By similarity). Ubiquitinates SNX9. Ubiquitinates CXCR4 and HGS/HRS and regulates sorting of CXCR4 to the degradative pathway. It is involved in the negative regulation of MAVS-dependent cellular antiviral responses. Ubiquitinates MAVS through 'Lys-48'-linked conjugation resulting in MAVS proteasomal degradation. Involved in the regulation of apoptosis and reactive oxygen species levels through the ubiquitination and proteasomal degradation of TXNIP. Mediates the antiapoptotic activity of epidermal growth factor through the ubiquitination and proteasomal degradation of p15 BID. Targets DTX1 for lysosomal degradation and controls NOTCH1 degradation, in the absence of ligand, through 'Lys-29'-linked polyubiquitination.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q92462|PUB1_SCHPO E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2

 Score =  359 bits (921), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/413 (47%), Positives = 251/413 (60%), Gaps = 36/413 (8%)

Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQ 570
           LPPGWE R D  GR YYVDHNTRSTTW RPN   L           H  +  +       
Sbjct: 207 LPPGWERRTDNLGRTYYVDHNTRSTTWIRPN---LSSVAGAAAAELHSSASSAN----VT 259

Query: 571 HGVGVSSSSAVSFSTGVTEEDDAL----GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
            GV  SSS+A   +       +A     G LP GWE+R  P+GR YFV+H  RTT W DP
Sbjct: 260 EGVQPSSSNAARRTEASVLTSNATTAGSGELPPGWEQRYTPEGRPYFVDHNTRTTTWVDP 319

Query: 627 R---------------TQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFED 671
           R                Q Q + Q+G    PLP GWE+R T     YFVDHNT++TT++D
Sbjct: 320 RRQQYIRSYGGPNNATIQQQPVSQLG----PLPSGWEMRLTNTARVYFVDHNTKTTTWDD 375

Query: 672 PRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQV 731
           PR     DQ     VP+ Y+R FR KL  F      + LP    I V R  +FEDSY ++
Sbjct: 376 PRLPSSLDQN----VPQ-YKRDFRRKLIYFLSQPALHPLPGQCHIKVRRNHIFEDSYAEI 430

Query: 732 MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQIN 791
           MR  A +L++RL I F GE+GLDYGG+SRE+FFLLSHE+ NP YCLFEY++ +NY+LQIN
Sbjct: 431 MRQSATDLKKRLMIKFDGEDGLDYGGLSREYFFLLSHEMFNPFYCLFEYSSVDNYTLQIN 490

Query: 792 PASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFY 851
           P S +NP+HL YFKFIGR I +A++H RF+ + F + FYK +L KK+ ++D+ES+D E+Y
Sbjct: 491 PHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEYY 550

Query: 852 NSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
            SLVWI DN+I    L+L  SV+    G+V+  +LK NG  I V EENK EY+
Sbjct: 551 RSLVWILDNDITGV-LDLTFSVEDNCFGEVVTIDLKPNGRNIEVTEENKREYV 602

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Regulates ubiquitination of cdc25.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P39940|RSP5_YEAST E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSP5 PE=1 SV=1

 Score =  353 bits (906), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/433 (44%), Positives = 256/433 (59%), Gaps = 52/433 (12%)

Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQ 570
           LPPGWE R D  GR YYVDHNTR+TTW+RP  ++ +       ER + ++  ++      
Sbjct: 231 LPPGWERRTDNFGRTYYVDHNTRTTTWKRPTLDQTE------AERGNQLNANTELERRQH 284

Query: 571 HGV----GVSSSSAVSFSTG------------------VTEEDDALGSLPSGWERRVQPD 608
            G     G S +S+V+   G                         LG LPSGWE+R  P+
Sbjct: 285 RGRTLPGGSSDNSSVTVQVGGGSNIPPVNGAAAAAFAATGGTTSGLGELPSGWEQRFTPE 344

Query: 609 GRVYFVNHKNRTTQWEDPR--------------TQGQEIGQIGADEPPLPPGWEIRYTED 654
           GR YFV+H  RTT W DPR               Q Q + Q+G    PLP GWE+R T  
Sbjct: 345 GRAYFVDHNTRTTTWVDPRRQQYIRTYGPTNTTIQQQPVSQLG----PLPSGWEMRLTNT 400

Query: 655 GTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHI 714
              YFVDHNT++TT++DPR     DQ     VP+ Y+R FR K+  FR      +LP   
Sbjct: 401 ARVYFVDHNTKTTTWDDPRLPSSLDQN----VPQ-YKRDFRRKVIYFRSQPALRILPGQC 455

Query: 715 KITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPM 774
            I V R+ +FED+Y ++MR    +L++RL I F GEEGLDYGGVSRE+FFLLSHE+ NP 
Sbjct: 456 HIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPF 515

Query: 775 YCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRML 834
           YCLFEY+  +NY++QINP S +NP+HL YFKFIGR + + ++H RF+ + F    YK ML
Sbjct: 516 YCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMML 575

Query: 835 NKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIR 894
            KK+V++D+E +D E YNSL W+ +N+ID   L+L  S D E  G+V+  +LK +G  I 
Sbjct: 576 RKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDERFGEVVTVDLKPDGRNIE 634

Query: 895 VCEENKEEYMRWY 907
           V + NK+EY+  Y
Sbjct: 635 VTDGNKKEYVELY 647

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Component of a RSP5 ubiquitin ligase complex which specifies polyubiquitination and intracellular trafficking of the general amino acid permease GAP1 as well as other cell surface proteins like GAP1, FUR4, MAL61, PMA1 and STE2. The RSP5-BUL1/2 complex is also necessary for the heat-shock element (HSE)-mediated gene expression, nitrogen starvation GLN3-dependent transcription, pressure-induced differential regulation of the two tryptophan permeases TAT1 and TAT2 and sorting efficiency into multivesicular bodies. Also acts on RBP1. Plays a role in tolerance to o-dinitrobenzene. Involved in actin cytoskeleton organization and dynamics. Ubiquitinates the LAS17-binding proteins LSB1 and PIN3/LSB2 without directing them for degradation and affects LAS17 levels in a SLA1-dependent and LSB1/2-independent manner.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P46934|NEDD4_HUMAN E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=4

 Score =  343 bits (879), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 290/571 (50%), Gaps = 68/571 (11%)

Query: 373  PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------------LPPGWELRRDPR 417
            PLPPGWE RQD  GR YYV+H +R + W+RP P                   +  RR   
Sbjct: 611  PLPPGWEERQDILGRTYYVNHESRRTQWKRPTPQDNLTDAENGNIQLQAQRAFTTRRQIS 670

Query: 418  GRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVS 477
                 VD+   S  W+    +    + +    +A      S     P H     ++    
Sbjct: 671  EETESVDNRESSENWEIIREDEATMYSN----QAFPSPPPSSNLDVPTHLAEELNARLTI 726

Query: 478  FSTGVTEEDADTYGRRYYVDHNTRSSSWE----RPQP-----------LPPGWELRRDPR 522
            F      + A +       +H++R  S +      QP           LPPGWE ++D R
Sbjct: 727  FGNSAVSQPASS------SNHSSRRGSLQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDER 780

Query: 523  GRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVS 582
            GR YYVDHN+R+TTW +P           Q          SQ    PQ     S S    
Sbjct: 781  GRSYYVDHNSRTTTWTKPTV---------QATVETSQLTSSQSSAGPQSQASTSDSGQQV 831

Query: 583  FSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ------GQEIGQI 636
                  E+    G LP GWE R  P+GR +F++H  +TT WEDPR +      G+     
Sbjct: 832  TQPSEIEQ----GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAHLRGKTSLDT 887

Query: 637  GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRW 696
              D  PLPPGWE R   DG  ++++HN + T +EDPR     +     G    Y R ++ 
Sbjct: 888  SNDLGPLPPGWEERTHTDGRIFYINHNIKRTQWEDPR----LENVAITGPAVPYSRDYKR 943

Query: 697  KLSQFR-YLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE-LRRRLYIIFRGEEGLD 754
            K   FR  L   N +P+  ++ + R T+ EDSY ++M +   + L+ RL+I F GE+GLD
Sbjct: 944  KYEFFRRKLKKQNDIPNKFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLD 1003

Query: 755  YGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFIGRFIAM 813
            YGGV+REWFFL+S E+ NP Y LFEY+  +NY+LQINP S   N DHL YFKFIGR   M
Sbjct: 1004 YGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGM 1063

Query: 814  ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV 873
            A+YHG+ +   F  PFYK ML+K + + D+ES+D E+YNSL WI +N+  E  L+L   +
Sbjct: 1064 AVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILENDPTE--LDLRFII 1121

Query: 874  DFEILGQVIHHELKENGDKIRVCEENKEEYM 904
            D E+ GQ   HELK  G +I V  +NK+EY+
Sbjct: 1122 DEELFGQTHQHELKNGGSEIVVTNKNKKEYI 1152

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in the pathway leading to the degradation of VEGFR-2/KDFR, independently of its ubiquitin-ligase activity. Monoubiquitinates IGF1R at multiple sites, thus leading to receptor internalization and degradation in lysosomes. Ubiquitinates FGFR1, leading to receptor internalization and degradation in lysosomes. According to PubMed:18562292 the direct link between NEDD4 and PTEN regulation through polyubiquitination described in PubMed:17218260 is questionable. Involved in ubiquitination of ERBB4 intracellular domain E4ICD. Involved in the budding of many viruses. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. Ubiquitinates TNK2 and regulates EGF-induced degradation of EGFR and TNF2.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	994
307187706	1243	E3 ubiquitin-protein ligase suppressor o	0.413	0.330	0.828	0.0
380017666	1083	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.416	0.382	0.822	0.0
122937736	997	AAEL001205-PA [Aedes aegypti]	0.414	0.413	0.817	0.0
307212263	1190	E3 ubiquitin-protein ligase suppressor o	0.414	0.346	0.821	0.0
383851034	1077	PREDICTED: E3 ubiquitin-protein ligase S	0.476	0.440	0.721	0.0
157115839	907	ubiquitin protein ligase [Aedes aegypti]	0.414	0.454	0.817	0.0
340730127	1096	PREDICTED: e3 ubiquitin-protein ligase S	0.490	0.445	0.717	0.0
158299804	891	AGAP009074-PA [Anopheles gambiae str. PE	0.415	0.463	0.817	0.0
170036083	893	ubiquitin protein ligase [Culex quinquef	0.415	0.462	0.809	0.0
312375004	817	hypothetical protein AND_15233 [Anophele	0.415	0.505	0.819	0.0

>gi|307187706|gb|EFN72678.1| E3 ubiquitin-protein ligase suppressor of deltex [Camponotus floridanus]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/419 (82%), Positives = 376/419 (89%), Gaps = 8/419 (1%)

Query: 488  DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
            D YGRRYYVDHNTRS+SWERPQPLPPGWE+RRDPRGR+YYVDHNTRSTTWQRPN+ERLQH
Sbjct: 668  DLYGRRYYVDHNTRSTSWERPQPLPPGWEVRRDPRGRIYYVDHNTRSTTWQRPNTERLQH 727

Query: 548  FKHWQGERAHVVSQGSQRFLYPQ-HGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQ 606
            F+HWQGER +VV QG+QRFLYPQ HG  V    A   ST   ++DDALG LP+GWERR Q
Sbjct: 728  FQHWQGERQYVVQQGNQRFLYPQAHGNQV----AAGPSTSAADDDDALGPLPAGWERRKQ 783

Query: 607  PDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRS 666
            P+GRVY+VNHKNRTTQWEDPRTQGQE G    DEPPLP GWEIR TEDG RYFVDHNTR+
Sbjct: 784  PEGRVYYVNHKNRTTQWEDPRTQGQETGM---DEPPLPDGWEIRLTEDGVRYFVDHNTRT 840

Query: 667  TTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED 726
            TTF+DPRPG PK  KG Y VP+AYERSFRWKLSQFR+LC  N LP+HIKI+V+RQTLFED
Sbjct: 841  TTFQDPRPGAPKGPKGVYRVPRAYERSFRWKLSQFRFLCQTNALPNHIKISVSRQTLFED 900

Query: 727  SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY 786
            SYHQ+M   A+ LRRRLYIIF+GEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK+NY
Sbjct: 901  SYHQIMNAEAFALRRRLYIIFKGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKSNY 960

Query: 787  SLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 846
            SLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI
Sbjct: 961  SLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 1020

Query: 847  DPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMR 905
            DPEFY SLVWI++NNIDECGLELY SVDFEILGQVIHHELK+ GDK+RV E+NKEEY+R
Sbjct: 1021 DPEFYKSLVWIKENNIDECGLELYYSVDFEILGQVIHHELKDGGDKVRVGEDNKEEYIR 1079

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017666|ref|XP_003692768.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Su(dx)-like [Apis florea]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/418 (82%), Positives = 375/418 (89%), Gaps = 4/418 (0%)

Query: 488 DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           D YGRRYYVDH TRS+SWERPQPLPPGWE+RRDPRGR+YYVDHNTR+TTWQRPN+ERLQH
Sbjct: 506 DIYGRRYYVDHKTRSTSWERPQPLPPGWEVRRDPRGRIYYVDHNTRTTTWQRPNTERLQH 565

Query: 548 FKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQP 607
           F+HWQGER HVV QG+QRFLYPQ   G  ++ A   ++ + ++DDALG LP+GWERR QP
Sbjct: 566 FQHWQGERQHVVQQGNQRFLYPQ-AHGNQTAIAGPSTSSMVDDDDALGPLPAGWERRKQP 624

Query: 608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRST 667
           +GRVY+VNHKNRTTQWEDPRTQGQE G    DEPPLP GWEIR TEDG RYFVDHNTR+T
Sbjct: 625 EGRVYYVNHKNRTTQWEDPRTQGQETG---IDEPPLPDGWEIRLTEDGVRYFVDHNTRTT 681

Query: 668 TFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDS 727
           TF+DPRPG PK  KG Y VP+AYERSFRWKLSQFR+LC  N LP+HIKI+V RQTLFEDS
Sbjct: 682 TFQDPRPGAPKGPKGVYRVPRAYERSFRWKLSQFRFLCQTNALPNHIKISVNRQTLFEDS 741

Query: 728 YHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 787
           YHQ+M   A+ LRRRLYIIF+GEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK+NYS
Sbjct: 742 YHQIMNAEAFALRRRLYIIFKGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKSNYS 801

Query: 788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID 847
           LQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL+MKDIESID
Sbjct: 802 LQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLIMKDIESID 861

Query: 848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMR 905
           PEFY SLVWI++NNIDECGLELY SVDFEILGQVIHHELKE GDKIRV EENKEEY+R
Sbjct: 862 PEFYKSLVWIKENNIDECGLELYYSVDFEILGQVIHHELKEGGDKIRVIEENKEEYIR 919

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|122937736|gb|ABM68581.1| AAEL001205-PA [Aedes aegypti]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/421 (81%), Positives = 369/421 (87%), Gaps = 9/421 (2%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E   D YGRRYYVDHNTRS+ WE+PQPLP GWE+RRD RGRVYYVDHNTR+TTWQRPNSE
Sbjct: 421 EMRVDKYGRRYYVDHNTRSTYWEKPQPLPAGWEMRRDARGRVYYVDHNTRTTTWQRPNSE 480

Query: 544 RLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWER 603
           RL HF+HWQG+R H++SQG+QRFLYPQH       +  S +T V EEDD LG LP GWE+
Sbjct: 481 RLMHFQHWQGQRQHIISQGNQRFLYPQH-------AQQSNTTSVQEEDDGLGPLPDGWEK 533

Query: 604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
           RVQPD RVYFVNHKNRTTQWEDPRTQGQE+  +   E PLPPGWEIRYT  G R+FVDHN
Sbjct: 534 RVQPDNRVYFVNHKNRTTQWEDPRTQGQEVNMLA--EGPLPPGWEIRYTATGERFFVDHN 591

Query: 664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
            R TTFEDPRPG PK  KG YGVP+AYERSFRWKLSQFRYLC  N L SHIKIT+ RQTL
Sbjct: 592 NRKTTFEDPRPGAPKGGKGVYGVPRAYERSFRWKLSQFRYLCQSNALASHIKITLTRQTL 651

Query: 724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
           FEDSYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK
Sbjct: 652 FEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 711

Query: 784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
           NNYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL  KDI
Sbjct: 712 NNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTTKDI 771

Query: 844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           ESIDPEFYNSL+W+RDNNIDECGLEL+ SVDFE+LGQ+IHHELKE GDK +V EENKEEY
Sbjct: 772 ESIDPEFYNSLIWVRDNNIDECGLELWFSVDFEVLGQIIHHELKEEGDKEKVTEENKEEY 831

Query: 904 M 904
           +
Sbjct: 832 I 832

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212263|gb|EFN88071.1| E3 ubiquitin-protein ligase suppressor of deltex [Harpegnathos saltator]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/419 (82%), Positives = 377/419 (89%), Gaps = 7/419 (1%)

Query: 488  DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
            D YGRRYYVDHNTRS+SWERPQPLP GWE+RRDPRGR+YYVDHNTRSTTWQRPN+ERLQH
Sbjct: 614  DVYGRRYYVDHNTRSTSWERPQPLPAGWEVRRDPRGRIYYVDHNTRSTTWQRPNTERLQH 673

Query: 548  FKHWQGERAHVVSQGSQRFLYPQ-HGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQ 606
            F+HWQGER +VV QG+QRFLYPQ HG   + ++A   ST + ++DD LG LP+GWERR Q
Sbjct: 674  FQHWQGERQYVVQQGNQRFLYPQAHG---NQAAASGPSTSMGDDDDPLGPLPAGWERRKQ 730

Query: 607  PDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRS 666
            P+GRVY+VNHKNRTTQWEDPRTQGQE G    +EPPLP GWEIR TEDG RYFVDHNTR+
Sbjct: 731  PEGRVYYVNHKNRTTQWEDPRTQGQETG---IEEPPLPDGWEIRLTEDGVRYFVDHNTRT 787

Query: 667  TTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED 726
            TTF+DPRPG PK  KG Y VP+AYERSFRWKLSQFR+LC  N LP+HIKI+V+RQTLFED
Sbjct: 788  TTFQDPRPGAPKGPKGVYRVPRAYERSFRWKLSQFRFLCQTNALPNHIKISVSRQTLFED 847

Query: 727  SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY 786
            SYHQ+M   A+ LRRRLYIIF+GEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK+NY
Sbjct: 848  SYHQIMNAEAFALRRRLYIIFKGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKSNY 907

Query: 787  SLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 846
            SLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI
Sbjct: 908  SLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 967

Query: 847  DPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMR 905
            DPEFY SLVWI++NNIDECGLELY SVDFEILGQVIHHELKE GDK+RV E+NKEEY+R
Sbjct: 968  DPEFYKSLVWIKENNIDECGLELYYSVDFEILGQVIHHELKEGGDKVRVGEDNKEEYIR 1026

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851034|ref|XP_003701058.1| PREDICTED: E3 ubiquitin-protein ligase Su(dx)-like [Megachile rotundata]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/495 (72%), Positives = 401/495 (81%), Gaps = 21/495 (4%)

Query: 419 RVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSF 478
           R+ ++D +  ST+    N   +Q      G+ A + SQ +Q         G S   A   
Sbjct: 432 RIPHIDQSATSTSAAHSNPRMMQRVASLTGQTAVIPSQSTQS--------GSSILLAEVD 483

Query: 479 STGVTEEDA--------DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDH 530
            T  +EE          D YGRRYYVDHNTRS+SWERPQPLPPGWE+RRDPRGR+YYVDH
Sbjct: 484 HTNHSEEPLPPGWEMRYDIYGRRYYVDHNTRSTSWERPQPLPPGWEVRRDPRGRIYYVDH 543

Query: 531 NTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEE 590
           NTRSTTWQRPN+ERLQHF+HWQGER HVV QG+QRFLY Q G G + ++    ST   ++
Sbjct: 544 NTRSTTWQRPNTERLQHFQHWQGERQHVVQQGNQRFLYSQ-GYG-NQTAMPGPSTSTVDD 601

Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIR 650
           DD LG LP+GWE+R QP+GRVY+VNHKNRTTQWEDPRTQGQE G    DEPPLP GWE+R
Sbjct: 602 DDVLGPLPAGWEKRKQPEGRVYYVNHKNRTTQWEDPRTQGQETG---IDEPPLPDGWEVR 658

Query: 651 YTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVL 710
            TEDG RYFVDHNTR+TTF+DPRPG PK  KG Y VP+AYERSFRWKLSQFR+LC  N +
Sbjct: 659 LTEDGVRYFVDHNTRTTTFQDPRPGAPKGPKGIYRVPRAYERSFRWKLSQFRFLCQTNAV 718

Query: 711 PSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEV 770
           P+H+KI+V RQTLFEDSYHQ+M   A+ LRRRLYIIF+GEEGLDYGGVSREWFFLLSHEV
Sbjct: 719 PNHMKISVNRQTLFEDSYHQIMNAEAFALRRRLYIIFKGEEGLDYGGVSREWFFLLSHEV 778

Query: 771 LNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFY 830
           LNPMYCLFEYANK+NYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFY
Sbjct: 779 LNPMYCLFEYANKSNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFY 838

Query: 831 KRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENG 890
           KRMLNKKL+MKDIESIDPEFY SLVWI++NNIDECGLELY SVDFEILGQVIHHELKE G
Sbjct: 839 KRMLNKKLIMKDIESIDPEFYKSLVWIKENNIDECGLELYYSVDFEILGQVIHHELKEGG 898

Query: 891 DKIRVCEENKEEYMR 905
           DKIRV E+NKE+Y+R
Sbjct: 899 DKIRVIEDNKEDYIR 913

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115839|ref|XP_001658307.1| ubiquitin protein ligase [Aedes aegypti] gi|108883477|gb|EAT47702.1| AAEL001205-PA, partial [Aedes aegypti]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/421 (81%), Positives = 369/421 (87%), Gaps = 9/421 (2%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E   D YGRRYYVDHNTRS+ WE+PQPLP GWE+RRD RGRVYYVDHNTR+TTWQRPNSE
Sbjct: 331 EMRVDKYGRRYYVDHNTRSTYWEKPQPLPAGWEMRRDARGRVYYVDHNTRTTTWQRPNSE 390

Query: 544 RLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWER 603
           RL HF+HWQG+R H++SQG+QRFLYPQH       +  S +T V EEDD LG LP GWE+
Sbjct: 391 RLMHFQHWQGQRQHIISQGNQRFLYPQH-------AQQSNTTSVQEEDDGLGPLPDGWEK 443

Query: 604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
           RVQPD RVYFVNHKNRTTQWEDPRTQGQE+  +   E PLPPGWEIRYT  G R+FVDHN
Sbjct: 444 RVQPDNRVYFVNHKNRTTQWEDPRTQGQEVNMLA--EGPLPPGWEIRYTATGERFFVDHN 501

Query: 664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
            R TTFEDPRPG PK  KG YGVP+AYERSFRWKLSQFRYLC  N L SHIKIT+ RQTL
Sbjct: 502 NRKTTFEDPRPGAPKGGKGVYGVPRAYERSFRWKLSQFRYLCQSNALASHIKITLTRQTL 561

Query: 724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
           FEDSYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK
Sbjct: 562 FEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 621

Query: 784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
           NNYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL  KDI
Sbjct: 622 NNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTTKDI 681

Query: 844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           ESIDPEFYNSL+W+RDNNIDECGLEL+ SVDFE+LGQ+IHHELKE GDK +V EENKEEY
Sbjct: 682 ESIDPEFYNSLIWVRDNNIDECGLELWFSVDFEVLGQIIHHELKEEGDKEKVTEENKEEY 741

Query: 904 M 904
           +
Sbjct: 742 I 742

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340730127|ref|XP_003403338.1| PREDICTED: e3 ubiquitin-protein ligase Su(dx)-like [Bombus terrestris]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/503 (71%), Positives = 403/503 (80%), Gaps = 15/503 (2%)

Query: 408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHG 467
           P   L  D   R+   +  T  TT  R NS  +Q      G+   +  Q +Q    P+  
Sbjct: 440 PSSILSLDDARRISRTEQYTNPTT-TRSNSRVVQRVAPLTGQTTMIPGQSTQ----PESS 494

Query: 468 -----VGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPR 522
                VG ++ S    + G  E   D YGRRYYVDH TRS+SWERPQPLPPGWE+RRDPR
Sbjct: 495 IVLAEVGPTNHSEEPLAPGW-EMRYDIYGRRYYVDHKTRSTSWERPQPLPPGWEVRRDPR 553

Query: 523 GRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVS 582
           GR+YYVDHN R+TTWQ PN+ERLQHF+HWQGER HVV QG+QRFLYPQ   G  ++ A  
Sbjct: 554 GRIYYVDHNRRTTTWQIPNTERLQHFQHWQGERQHVVQQGNQRFLYPQ-AHGNQAAIAGP 612

Query: 583 FSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPP 642
            ++ + ++DDALG LP+GWERR QP+GRVY+VNHKNRTTQWEDPRTQGQE G    DEPP
Sbjct: 613 STSSIIDDDDALGPLPAGWERRKQPEGRVYYVNHKNRTTQWEDPRTQGQETG---IDEPP 669

Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFR 702
           LP GWE+R TEDG RYFVDHNTR+TTF+DPRPG PK  KG Y VP+AYERSFRWKLSQFR
Sbjct: 670 LPDGWEMRLTEDGVRYFVDHNTRTTTFQDPRPGAPKGPKGIYRVPRAYERSFRWKLSQFR 729

Query: 703 YLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREW 762
           +LC  N LP+HIKI+V RQTLFEDSYHQ+M   A+ LRRRLYIIF+GEEGLDYGGVSREW
Sbjct: 730 FLCQTNALPNHIKISVNRQTLFEDSYHQIMNAEAFALRRRLYIIFKGEEGLDYGGVSREW 789

Query: 763 FFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIY 822
           FFLLSHEVLNPMYCLFEYANK+NYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIY
Sbjct: 790 FFLLSHEVLNPMYCLFEYANKSNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIY 849

Query: 823 SGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVI 882
           SGFTMPFYKRMLNKKLVMKDIESIDPEFY SLVWI++NNIDECGLELY SVDFEILGQVI
Sbjct: 850 SGFTMPFYKRMLNKKLVMKDIESIDPEFYKSLVWIKENNIDECGLELYYSVDFEILGQVI 909

Query: 883 HHELKENGDKIRVCEENKEEYMR 905
           HHELKE GDKIRV E+NKEEY+R
Sbjct: 910 HHELKEGGDKIRVIEDNKEEYIR 932

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299804|ref|XP_319824.3| AGAP009074-PA [Anopheles gambiae str. PEST] gi|157013694|gb|EAA14748.3| AGAP009074-PA [Anopheles gambiae str. PEST]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/421 (81%), Positives = 372/421 (88%), Gaps = 8/421 (1%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E   D +GRRYYVDHNTRS+ WE+PQPLP GWE RRDPRGRVYYVDHNTR+TTWQRPNSE
Sbjct: 314 EMRVDKFGRRYYVDHNTRSTYWEKPQPLPAGWEQRRDPRGRVYYVDHNTRTTTWQRPNSE 373

Query: 544 RLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWER 603
           RL HF+HWQG+R H++SQG+QRFLYPQH      S+++S +    EEDD LG LP GWE+
Sbjct: 374 RLMHFQHWQGQRQHIISQGNQRFLYPQH---AQQSNSISVAH---EEDDGLGPLPDGWEK 427

Query: 604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
           RVQPD RVYFVNHKNRTTQWEDPRTQGQE+  +   E PLPPGWEIRYT +G R+FVDHN
Sbjct: 428 RVQPDNRVYFVNHKNRTTQWEDPRTQGQEVSMLA--EGPLPPGWEIRYTANGERFFVDHN 485

Query: 664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
            R TTFEDPRPG PK  KG YGVPKAYERSFRWKLSQFRYLC  N L SHIKIT+ RQTL
Sbjct: 486 NRKTTFEDPRPGAPKGAKGVYGVPKAYERSFRWKLSQFRYLCQSNALASHIKITLTRQTL 545

Query: 724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
           FEDSYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK
Sbjct: 546 FEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 605

Query: 784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
           NNYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL  KDI
Sbjct: 606 NNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTTKDI 665

Query: 844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           E+IDPEFYNSL+W+RDNNIDECGLEL+ SVDFE+LGQ+IHHELK+NGDK RV EENKEEY
Sbjct: 666 ETIDPEFYNSLIWVRDNNIDECGLELWFSVDFEVLGQIIHHELKDNGDKERVTEENKEEY 725

Query: 904 M 904
           +
Sbjct: 726 I 726

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036083|ref|XP_001845895.1| ubiquitin protein ligase [Culex quinquefasciatus] gi|167878586|gb|EDS41969.1| ubiquitin protein ligase [Culex quinquefasciatus]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/421 (80%), Positives = 368/421 (87%), Gaps = 8/421 (1%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E   D YGRRYYVDHNTRS+ WE+PQPLP GWE+RRD RGRVYYVDHNTR+TTWQRPNSE
Sbjct: 316 EMRVDKYGRRYYVDHNTRSTYWEKPQPLPAGWEMRRDARGRVYYVDHNTRTTTWQRPNSE 375

Query: 544 RLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWER 603
           RL HF+HWQG+R H++SQG+QRFLYPQH    +++S         EEDD LG LP GWE+
Sbjct: 376 RLMHFQHWQGQRQHIISQGNQRFLYPQHAQQSNTTSVPH------EEDDGLGPLPDGWEK 429

Query: 604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
           RVQPD RVYFVNHKNRTTQWEDPRTQGQE+  +   E PLPPGWEIRYT  G R+FVDHN
Sbjct: 430 RVQPDNRVYFVNHKNRTTQWEDPRTQGQEVNMLA--EGPLPPGWEIRYTATGERFFVDHN 487

Query: 664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
            R TTFEDPRPG PK  KG YGVP+AYERSFRWKLSQFRYLC  N L SHIKIT+ RQTL
Sbjct: 488 ARKTTFEDPRPGAPKGSKGVYGVPRAYERSFRWKLSQFRYLCQSNALASHIKITLTRQTL 547

Query: 724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
           FEDSYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK
Sbjct: 548 FEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 607

Query: 784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
           NNYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL  KDI
Sbjct: 608 NNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTTKDI 667

Query: 844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           E+IDPEFYNSL+W+RDNNIDECGLEL+ SVDFE+LGQ+IHHELKE GDK +V EENKEEY
Sbjct: 668 ETIDPEFYNSLIWVRDNNIDECGLELWFSVDFEVLGQIIHHELKEEGDKEKVSEENKEEY 727

Query: 904 M 904
           +
Sbjct: 728 I 728

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375004|gb|EFR22456.1| hypothetical protein AND_15233 [Anopheles darlingi]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/421 (81%), Positives = 369/421 (87%), Gaps = 8/421 (1%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           E   D +GRRYYVDHNTRS+ WE+PQPLP GWE RRDPRGRVYYVDHNTR+TTWQRPNSE
Sbjct: 240 EMRVDKFGRRYYVDHNTRSTYWEKPQPLPAGWEQRRDPRGRVYYVDHNTRTTTWQRPNSE 299

Query: 544 RLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWER 603
           RL HF+HWQG+R H++SQG+QRFLYPQH      S+ VS      EEDD LG LP GWE+
Sbjct: 300 RLMHFQHWQGQRQHIISQGNQRFLYPQH---AQQSNTVSVPH---EEDDGLGPLPEGWEK 353

Query: 604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
           RVQPD RVYFVNHKNRTTQWEDPRTQGQE+  +   E PLPPGWEIRYT  G R+FVDHN
Sbjct: 354 RVQPDNRVYFVNHKNRTTQWEDPRTQGQEVSMLA--EGPLPPGWEIRYTATGERFFVDHN 411

Query: 664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
            R TTFEDPRPG PK  KG YGVPKAYERSFRWKLSQFRYLC  N L SHIKIT+ RQTL
Sbjct: 412 NRKTTFEDPRPGAPKGVKGVYGVPKAYERSFRWKLSQFRYLCQSNALASHIKITLTRQTL 471

Query: 724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
           FEDSYHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK
Sbjct: 472 FEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 531

Query: 784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
           NNYSLQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL  KDI
Sbjct: 532 NNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTTKDI 591

Query: 844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           ESIDPEFYNSL+W+RDN+IDECGLEL+ SVDFE+LGQ+IHHELKE+GDK RV EENKEEY
Sbjct: 592 ESIDPEFYNSLIWVRDNSIDECGLELWFSVDFEVLGQIIHHELKEDGDKERVTEENKEEY 651

Query: 904 M 904
           +
Sbjct: 652 I 652

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	994
FB|FBgn0003557	949	Su(dx) "Suppressor of deltex"	0.413	0.433	0.808	5.7e-250
UNIPROTKB|G3V8C2	864	Itch "E3 ubiquitin-protein lig	0.408	0.469	0.586	9e-178
MGI|MGI:1202301	864	Itch "itchy, E3 ubiquitin prot	0.408	0.469	0.586	1.2e-177
UNIPROTKB|F1MGQ5	862	ITCH "E3 ubiquitin-protein lig	0.408	0.470	0.586	1.2e-177
UNIPROTKB|J9NTN8	862	ITCH "E3 ubiquitin-protein lig	0.408	0.470	0.586	2.4e-177
UNIPROTKB|Q96J02	903	ITCH "E3 ubiquitin-protein lig	0.408	0.449	0.583	8.1e-177
RGD|1359556	854	Itch "itchy E3 ubiquitin prote	0.408	0.475	0.583	1.7e-176
UNIPROTKB|E1BVS1	878	ITCH "E3 ubiquitin-protein lig	0.408	0.462	0.575	5e-175
UNIPROTKB|E2QXM7	879	ITCH "E3 ubiquitin-protein lig	0.405	0.458	0.579	1.7e-170
UNIPROTKB|F1NXT3	923	WWP1 "E3 ubiquitin-protein lig	0.388	0.418	0.610	3.5e-170

FB|FBgn0003557 Su(dx) "Suppressor of deltex" [Drosophila melanogaster (taxid:7227)]

 Score = 1888 (669.7 bits), Expect = 5.7e-250, Sum P(3) = 5.7e-250
 Identities = 337/417 (80%), Positives = 366/417 (87%)

Query:   488 DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
             D YGRRYYVDHNTRS+ WE+P PLPPGWE+R+D RGRVYYVDHNTR TTWQRPNSERL H
Sbjct:   374 DQYGRRYYVDHNTRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMH 433

Query:   548 FKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWERRVQP 607
             F+HWQG+RAHVVSQG+QR+LY Q                  +++DALG LP GWE+++Q 
Sbjct:   434 FQHWQGQRAHVVSQGNQRYLYSQQQQQPTAVTAQVTQ----DDEDALGPLPDGWEKKIQS 489

Query:   608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRST 667
             D RVYFVNHKNRTTQWEDPRTQGQE+  I  +E PLPPGWEIRYT  G R+FVDHNTR T
Sbjct:   490 DNRVYFVNHKNRTTQWEDPRTQGQEVSLI--NEGPLPPGWEIRYTAAGERFFVDHNTRRT 547

Query:   668 TFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDS 727
             TFEDPRPG PK  KG YGVP+AYERSFRWKLSQFRYLC  N LPSHIKITV RQTLFEDS
Sbjct:   548 TFEDPRPGAPKGAKGVYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITVTRQTLFEDS 607

Query:   728 YHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 787
             YHQ+MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS
Sbjct:   608 YHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 667

Query:   788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID 847
             LQINPASYVNPDHL YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKL +KDIE+ID
Sbjct:   668 LQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETID 727

Query:   848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
             PEFYNSL+W++DNNIDECGLEL+ SVDFE+LGQ+IHHELKENG+K RV EENKEEY+
Sbjct:   728 PEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYI 784

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA;NAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IGI

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IGI;IMP

GO:0007219 "Notch signaling pathway" evidence=IGI

GO:0016348 "imaginal disc-derived leg joint morphogenesis" evidence=IGI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0031623 "receptor internalization" evidence=IMP

GO:0005112 "Notch binding" evidence=IPI

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0019915 "lipid storage" evidence=IDA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

UNIPROTKB|G3V8C2 Itch "E3 ubiquitin-protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 1344 (478.2 bits), Expect = 9.0e-178, Sum P(3) = 9.0e-178
 Identities = 248/423 (58%), Positives = 310/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   294 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 353

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                  +E D LG LP GWE+
Sbjct:   354 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIFGNQDLFATSQNKEFDPLGPLPPGWEK 407

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   408 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 461

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   462 RRATTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 517

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   518 LFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 577

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   578 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 637

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   638 LESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 697

Query:   903 YMR 905
             Y+R
Sbjct:   698 YIR 700

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

MGI|MGI:1202301 Itch "itchy, E3 ubiquitin protein ligase" [Mus musculus (taxid:10090)]

 Score = 1344 (478.2 bits), Expect = 1.2e-177, Sum P(3) = 1.2e-177
 Identities = 248/423 (58%), Positives = 310/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   294 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 353

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                  +E D LG LP GWE+
Sbjct:   354 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIYGNQDLFATSQNKEFDPLGPLPPGWEK 407

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   408 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 461

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   462 RRATTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 517

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   518 LFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 577

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   578 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 637

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   638 LESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 697

Query:   903 YMR 905
             Y+R
Sbjct:   698 YIR 700

GO:0000151 "ubiquitin ligase complex" evidence=ISA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0002669 "positive regulation of T cell anergy" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISA;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISA;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISO;ISA

GO:0016874 "ligase activity" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IMP

GO:0035519 "protein K29-linked ubiquitination" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0043021 "ribonucleoprotein complex binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=ISO

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP;IDA

GO:0046329 "negative regulation of JNK cascade" evidence=IMP

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IMP

GO:0050687 "negative regulation of defense response to virus" evidence=ISO;IMP

GO:0051607 "defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO;IMP

GO:0090085 "regulation of protein deubiquitination" evidence=IMP

UNIPROTKB|F1MGQ5 ITCH "E3 ubiquitin-protein ligase" [Bos taurus (taxid:9913)]

 Score = 1343 (477.8 bits), Expect = 1.2e-177, Sum P(3) = 1.2e-177
 Identities = 248/423 (58%), Positives = 309/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   292 EQRVDQHGRVYYVDHIEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 351

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                  +E D LG LP GWE+
Sbjct:   352 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIYGNQDLFATSQNKEFDPLGPLPPGWEK 405

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   406 RTDSNGRVYFVNHNTRITQWEDPRNQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 459

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   460 RRTTTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 515

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   516 LFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 575

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   576 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 635

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   636 LESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 695

Query:   903 YMR 905
             Y+R
Sbjct:   696 YIR 698

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NTN8 ITCH "E3 ubiquitin-protein ligase" [Canis lupus familiaris (taxid:9615)]

 Score = 1343 (477.8 bits), Expect = 2.4e-177, Sum P(3) = 2.4e-177
 Identities = 248/423 (58%), Positives = 310/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   292 EQRVDQHGRVYYVDHIEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 351

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                  +E D LG LP GWE+
Sbjct:   352 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIYGNQDLFTTSQNKEFDPLGPLPPGWEK 405

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   406 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 459

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   460 RRTTTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 515

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   516 LFEDSFQQIMSFNPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 575

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   576 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 635

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   636 LESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 695

Query:   903 YMR 905
             Y+R
Sbjct:   696 YIR 698

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q96J02 ITCH "E3 ubiquitin-protein ligase Itchy homolog" [Homo sapiens (taxid:9606)]

 Score = 1338 (476.1 bits), Expect = 8.1e-177, Sum P(3) = 8.1e-177
 Identities = 247/423 (58%), Positives = 310/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   333 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 392

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                 ++E D LG LP GWE+
Sbjct:   393 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEK 446

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   447 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 500

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   501 RRTTTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 556

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   557 LFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 616

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   617 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 676

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+EC LE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   677 LESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 736

Query:   903 YMR 905
             Y+R
Sbjct:   737 YIR 739

GO:0006915 "apoptotic process" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;NAS;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;NAS

GO:0006954 "inflammatory response" evidence=NAS

GO:0001558 "regulation of cell growth" evidence=NAS

GO:0005634 "nucleus" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0046718 "viral entry into host cell" evidence=TAS

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0043021 "ribonucleoprotein complex binding" evidence=IPI

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0035519 "protein K29-linked ubiquitination" evidence=IDA

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0045236 "CXCR chemokine receptor binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0046329 "negative regulation of JNK cascade" evidence=ISS

GO:0090085 "regulation of protein deubiquitination" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

RGD|1359556 Itch "itchy E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 1332 (473.9 bits), Expect = 1.7e-176, Sum P(3) = 1.7e-176
 Identities = 247/423 (58%), Positives = 309/423 (73%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++ +RP+PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   284 EQRVDQHGRAYYVDHVEKRTTRDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 343

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+ +    Q                  +E D LG LP GWE+
Sbjct:   344 SVRNYEQWQLQRSQL--QGAMQ----QFNQRFIFGNQDLFATSQNKEFDPLGPLPPGWEK 397

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   398 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 451

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQT 722
              R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKITV R+T
Sbjct:   452 RRATTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKT 507

Query:   723 LFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYAN 782
             LFEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA 
Sbjct:   508 LFEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAG 567

Query:   783 KNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKD 842
             K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD
Sbjct:   568 KDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKD 627

Query:   843 IESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEE 902
             +ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V EENKEE
Sbjct:   628 LESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEE 687

Query:   903 YMR 905
             Y+R
Sbjct:   688 YIR 690

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0002669 "positive regulation of T cell anergy" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0035519 "protein K29-linked ubiquitination" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043021 "ribonucleoprotein complex binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045236 "CXCR chemokine receptor binding" evidence=ISO

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

GO:0046329 "negative regulation of JNK cascade" evidence=ISO

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=ISO

GO:0050687 "negative regulation of defense response to virus" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0090085 "regulation of protein deubiquitination" evidence=ISO

UNIPROTKB|E1BVS1 ITCH "E3 ubiquitin-protein ligase" [Gallus gallus (taxid:9031)]

 Score = 1328 (472.5 bits), Expect = 5.0e-175, Sum P(3) = 5.0e-175
 Identities = 243/422 (57%), Positives = 308/422 (72%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
             E+  D +GR YYVDH  + ++W+RP+PLPP WE R D  GR+YYVDH TR+TTWQRP  E
Sbjct:   309 EQRVDQHGRVYYVDHVEKRTTWDRPEPLPPSWERRVDNMGRIYYVDHFTRTTTWQRPTLE 368

Query:   544 RLQHFKHWQGERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWER 603
              +++++ WQ +R+ +  QG+      Q                  +E D LG LP GWE+
Sbjct:   369 SVRNYEQWQLQRSQL--QGAM-----QQFNQRFIYGNQDFSSTQNKEFDPLGPLPPGWEK 421

Query:   604 RVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHN 663
             R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  YFVDHN
Sbjct:   422 RTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPYFVDHN 475

Query:   664 TRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTL 723
              R+TT+ DPR G      G +    AY R F+ K+  FR+ C    +P HIKITV+R+TL
Sbjct:   476 RRTTTYIDPRTGKSALDNGPH---IAYVRDFKAKVHYFRFWCQQLAMPQHIKITVSRKTL 532

Query:   724 FEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK 783
             FEDS+ Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMYCLFEYA K
Sbjct:   533 FEDSFQQIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGK 592

Query:   784 NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDI 843
             +NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD+
Sbjct:   593 DNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDL 652

Query:   844 ESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
             ES+DPEFYNSL+W+++N+I+ECGLE++ SVD EILG++  H+LK NG  I V EENKEEY
Sbjct:   653 ESVDPEFYNSLIWVKENDIEECGLEMFFSVDKEILGEIKSHDLKPNGSNILVTEENKEEY 712

Query:   904 MR 905
             +R
Sbjct:   713 IR 714

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

GO:0002218 "activation of innate immune response" evidence=TAS

UNIPROTKB|E2QXM7 ITCH "E3 ubiquitin-protein ligase" [Canis lupus familiaris (taxid:9615)]

 Score = 1321 (470.1 bits), Expect = 1.7e-170, Sum P(3) = 1.7e-170
 Identities = 249/430 (57%), Positives = 312/430 (72%)

Query:   484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPG--WELRRDPRGRVYYVDHNTRSTTWQRPN 541
             E+  D +GR YYVDH  + ++W+RP+PLPPG  WE R D  GR+YYVDH TR+TTWQRP 
Sbjct:   304 EQRVDQHGRVYYVDHIEKRTTWDRPEPLPPGFSWERRVDNMGRIYYVDHFTRTTTWQRPT 363

Query:   542 SERLQHFKHWQGERAHV---VSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLP 598
              E +++++ WQ +R+ +   + Q +QRF+Y                    +E D LG LP
Sbjct:   364 LESVRNYEQWQLQRSQLQGAMQQFNQRFIYGNQDLFTTSQ---------NKEFDPLGPLP 414

Query:   599 SGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRY 658
              GWE+R   +GRVYFVNH  R TQWEDPR+QGQ       +E PLP GWE+R+T DG  Y
Sbjct:   415 PGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQ------LNEKPLPEGWEMRFTVDGIPY 468

Query:   659 FVDHNTRSTTFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKIT 717
             FVDHN R+TT+ DPR G      G    P+ AY R F+ K+  FR+ C    +P HIKIT
Sbjct:   469 FVDHNRRTTTYIDPRTGKSALDNG----PQIAYVRDFKAKVQYFRFWCQQLAMPQHIKIT 524

Query:   718 VARQTLFEDSYH--QVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMY 775
             V R+TLFED +   Q+M     +LRRRL++IF GEEGLDYGGV+REWFFLLSHEVLNPMY
Sbjct:   525 VTRKTLFEDVFDILQIMSFNPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMY 584

Query:   776 CLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLN 835
             CLFEYA K+NY LQINPASY+NPDHL YF+FIGRFIAMAL+HG+FI +GF++PFYKR+LN
Sbjct:   585 CLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILN 644

Query:   836 KKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRV 895
             K + +KD+ESIDPEFYNSL+W+++NNI+ECGLE+Y SVD EILG++  H+LK NG  I V
Sbjct:   645 KPVGLKDLESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILV 704

Query:   896 CEENKEEYMR 905
              EENKEEY+R
Sbjct:   705 TEENKEEYIR 714

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1NXT3 WWP1 "E3 ubiquitin-protein ligase" [Gallus gallus (taxid:9031)]

 Score = 1322 (470.4 bits), Expect = 3.5e-170, Sum P(3) = 3.5e-170
 Identities = 255/418 (61%), Positives = 297/418 (71%)

Query:   509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP------------NSERLQHFKH------ 550
             +PLPPGWE R+DP GR YYVDHNTR+TTW+RP            +  R+ +  H      
Sbjct:   351 EPLPPGWEQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTT 410

Query:   551 WQG---ERAHVVSQGSQRFLYPQHXXXXXXXXXXXXXXXXTEEDDALGSLPSGWERRVQP 607
             WQ    E      Q   +    Q                 + E+D LG LP GWERRV  
Sbjct:   411 WQRPTMESVRNFEQWQSQRNQLQGAMQQFNQRYLYSASMLSAENDPLGPLPPGWERRVDS 470

Query:   608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRST 667
             + RVYFVNH  +TTQWEDPRTQG +      +E PLP GWEIRYT +G RYFVDHNTR+T
Sbjct:   471 NDRVYFVNHNTKTTQWEDPRTQGLQ------NEDPLPEGWEIRYTREGVRYFVDHNTRTT 524

Query:   668 TFEDPRPGVPKDQKGAYGVPK-AYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED 726
             TF DPR G     KG    P+ AYERSFRWKL+ FRYLC  N LPSH+KI V+RQTLFED
Sbjct:   525 TFNDPRTGKSSVNKG----PQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFED 580

Query:   727 SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNY 786
             S+ Q+M L  Y+LRRRLY+IFRGEEGLDYGG++REWFFLLSHEVLNPMYCLFEYA K+NY
Sbjct:   581 SFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKSNY 640

Query:   787 SLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESI 846
              LQINPAS +NPDHL YF FIGRFIAMAL+HG+FI +GF++PFYKRML+KKL +KD+ESI
Sbjct:   641 CLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESI 700

Query:   847 DPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
             D EFYNSL+WIRDNNI+EC LE+Y  VD E+LG+V  HELK  G  I V EENKEEY+
Sbjct:   701 DTEFYNSLIWIRDNNIEECNLEMYFCVDMELLGKVTSHELKSGGSNILVTEENKEEYI 758

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BZZ3	WWP1_MOUSE	6, ., 3, ., 2, ., -	0.6533	0.4014	0.4346	yes	N/A
Q9Y0H4	SUDX_DROME	6, ., 3, ., 2, ., -	0.8133	0.4124	0.4320	yes	N/A
O00308	WWP2_HUMAN	6, ., 3, ., 2, ., -	0.6642	0.3913	0.4471	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	994
COG5021	872	COG5021, HUL4, Ubiquitin-protein ligase [Posttrans	1e-85
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	1e-72
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	1e-63
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	8e-38
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	1e-36
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	8e-27
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	4e-25
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	5e-22
COG5021	872	COG5021, HUL4, Ubiquitin-protein ligase [Posttrans	1e-17
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	2e-17
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	6e-17
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	5e-16
COG5021	872	COG5021, HUL4, Ubiquitin-protein ligase [Posttrans	2e-15
cd00030	102	cd00030, C2, C2 domain	5e-13
pfam00168	85	pfam00168, C2, C2 domain	3e-11
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-11
smart00239	101	smart00239, C2, Protein kinase C conserved region	6e-11
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	2e-10
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	4e-10
pfam00397	30	pfam00397, WW, WW domain	5e-10
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	1e-09
pfam00397	30	pfam00397, WW, WW domain	1e-09
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	2e-09
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	2e-09
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	2e-09
pfam00397	30	pfam00397, WW, WW domain	3e-09
pfam00397	30	pfam00397, WW, WW domain	3e-09
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	4e-09
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	4e-09
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	6e-09
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	1e-08
pfam00397	30	pfam00397, WW, WW domain	1e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-07
COG5104	590	COG5104, PRP40, Splicing factor [RNA processing an	4e-07
COG5104	590	COG5104, PRP40, Splicing factor [RNA processing an	1e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	2e-05
pfam00397	30	pfam00397, WW, WW domain	4e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	5e-05
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-04
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	4e-04
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	7e-04
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	0.001
pfam00168	85	pfam00168, C2, C2 domain	0.002
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.002
cd08686	118	cd08686, C2_ABR, C2 domain in the Active BCR (Brea	0.002
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	0.002
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	0.002
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	0.002
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	0.004
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	0.004
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	0.004

>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  294 bits (754), Expect = 1e-85
 Identities = 142/419 (33%), Positives = 204/419 (48%), Gaps = 35/419 (8%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERL-----------QHFKHWQGERAH 557
             L   +  R D  GR YY+DH+   T + RP  E                     +  H
Sbjct: 297 LRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGESTSFLVVNNDDSSSIKDLPH 356

Query: 558 VVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHK 617
            V  GS  FL         S    + S G T +     + P+GW   ++  G+  F +  
Sbjct: 357 QV--GSNPFLEAHPE---FSELLKNQSRGTTRD---FRNKPTGWSSSIEDLGQFLFSDFL 408

Query: 618 NRTTQWEDPRTQ--GQEIG-----------QIGADEPPLPPGWEIRYTEDGTRYFVDHNT 664
             ++ +ED R +  G+E             Q  + E PL  GW+ R       YFV+H  
Sbjct: 409 TSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLNNLYRFYFVEHRK 468

Query: 665 RSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLF 724
           ++ T  D R G          + +  +   R KL              ++ I V R  +F
Sbjct: 469 KTLTKNDSRLG-SFISLNKLDIRR-IKEDKRRKLFYSLKQKAKIF-DPYLHIKVRRDRVF 525

Query: 725 EDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKN 784
           EDSY ++M     +L++ L I F GEEG+D GG++REW FLLS E+ NP Y LFEY  ++
Sbjct: 526 EDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITED 585

Query: 785 NYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIE 844
            Y+L INP S +NP+HL YFKF+GR I  A+Y  R +   F+  FYK++L K + + D+E
Sbjct: 586 LYTLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLE 645

Query: 845 SIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEY 903
           S+DPE Y SLVW+ +N+IDE  L+L  +V+ +  G+    EL  NG  I V  ENK+EY
Sbjct: 646 SLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEY 704

Length = 872

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score =  244 bits (624), Expect = 1e-72
 Identities = 83/195 (42%), Positives = 123/195 (63%), Gaps = 1/195 (0%)

Query: 714 IKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNP 773
           +KITV R  + ED+  Q+ ++ + +L++ L + F GEEG+D GGV+RE+F L+S E+ NP
Sbjct: 1   LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNP 60

Query: 774 MYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRM 833
            Y LF Y   ++  L  NP+S+ + DHL  F+F+GR +  ALY GR +   F+  FYK++
Sbjct: 61  SYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKL 120

Query: 834 LNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEI-LGQVIHHELKENGDK 892
           L K L ++D+E +DPE Y SL  + DN+ DE  LEL  +++ +   G  +  ELK  G  
Sbjct: 121 LGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRD 180

Query: 893 IRVCEENKEEYMRWY 907
           I V  ENKEEY+  Y
Sbjct: 181 IPVTNENKEEYVDLY 195

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score =  217 bits (556), Expect = 1e-63
 Identities = 83/170 (48%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 740 RRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV-NP 798
           +R L I F GEEGLD GGV+RE+FFLLS E+ NP Y LF Y + N+Y L  NP S   N 
Sbjct: 4   KRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRY-SPNDYLLYPNPRSGFANE 62

Query: 799 DHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIR 858
           +HL YF+FIGR +  ALY  R +   F  PFYK++L K + + D+ES+DPE Y SL W+ 
Sbjct: 63  EHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLL 122

Query: 859 DNNIDECGLELYLSVDF-EILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
            NN     L+L  S+      GQV   ELK  G  I V EENK+EY+   
Sbjct: 123 LNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLV 172

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score =  137 bits (347), Expect = 8e-38
 Identities = 41/98 (41%), Positives = 65/98 (66%)

Query: 145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD 204
               KP+PY+E+ VD + PK T V K T  PKWNE FTVLV+P S + F++  H T + D
Sbjct: 17  SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKAD 76

Query: 205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSP 242
             +GE  L++  +L ++NGK E++++TL+L ++++ S 
Sbjct: 77  VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSS 114

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score =  140 bits (354), Expect = 1e-36
 Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 765 LLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSG 824
           LLS E+ NP Y LF Y   N+  L  NP S  +      FKF+G  I  A+Y+G  +   
Sbjct: 2   LLSKELFNPDYGLFFYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDLP 61

Query: 825 FTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHH 884
           F   F+K++L K + ++D+E +DPE Y SL  + + + DE  L L  +V  E  G +   
Sbjct: 62  FPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDGDEEELCLTFTVSGEGEGTI--- 118

Query: 885 ELKENGDKIRVCEENKEEY 903
           EL  NG  I V  ENKEEY
Sbjct: 119 ELIPNGSNIPVTNENKEEY 137

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score =  112 bits (282), Expect = 8e-27
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 13/97 (13%)

Query: 26  SNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKY 85
           SN+ V+ E  K             Y  L+ E+R+ +GIE+Q +AF +GF+EV+P   LK 
Sbjct: 156 SNIPVTEENKK------------EYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLKL 203

Query: 86  FDERELELILCGMQEIDVEDWQRNAIYRH-YTRNSKQ 121
           FD  ELEL++CG  EIDV+D + N  Y+  Y+ NS+ 
Sbjct: 204 FDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQT 240

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score =  107 bits (270), Expect = 4e-25
 Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y  L  ++R+ +GIEEQ +AF DGF+EV+P E L  F   ELEL++CG ++ID+ED ++N
Sbjct: 191 YVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKN 250

Query: 110 AIYRH-YTRNSKQ 121
             Y+  Y+ +S  
Sbjct: 251 TEYKGGYSSDSPT 263

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 48  DFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQ 107
           + Y  L  ++R+   I++Q +AF +GF  V+P E L  F   ELEL++CG  EIDVED +
Sbjct: 135 EEYVNLYVDYRLNESIKKQLEAFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLK 194

Query: 108 RNAIYRH-YTRNSKQ 121
           +N  Y   Y++NS  
Sbjct: 195 KNTEYDGGYSKNSPT 209

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 87.9 bits (218), Expect = 1e-17
 Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 41  TTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQE 100
           T +N +   Y + + ++++ + +E+Q  AF  GF+E++P + L+ FDE ELEL++ G+ E
Sbjct: 697 TNENKKE--YVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPE 754

Query: 101 -IDVEDWQRNAIYRHYTRNSKQ 121
            ID++DW+ N  Y  YT +S  
Sbjct: 755 DIDIDDWKSNTAYHGYTEDSPI 776

Length = 872

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score = 84.9 bits (211), Expect = 2e-17
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 944 RFCIEKVGK-DTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992
           +F I +VG  D  LP +HTCFN L LPPY S + + EKL YAI E  GFG
Sbjct: 303 KFTIRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score = 83.1 bits (206), Expect = 6e-17
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 944 RFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGF 991
           +F I K G  D  LP +HTCFNRL LPPY S + + EKL  AI E +GF
Sbjct: 280 KFTIRKAGSDDERLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGF 328

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET-EGFG 992
           +  I++   D  LP +HTCFNRL LPPY S + + EKL  AIEE  EGFG
Sbjct: 247 KITIQRKDDDDRLPTAHTCFNRLKLPPYSSKEILKEKLLIAIEEGSEGFG 296

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 80.6 bits (199), Expect = 2e-15
 Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 944 RFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
           +F IEK G  D  LP +HTCFNRL LP Y S +++  KL  AI E  GFG  
Sbjct: 821 KFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872

Length = 872

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRDCT 206
           K +PY+++ +  K    T+VVKNT  P WNE F   V       +   + D   F +D  
Sbjct: 19  KSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78

Query: 207 IGEKRLNIYGVLAHYNGKCEHLEITLDL 234
           +GE  +     L+      +  E+ L L
Sbjct: 79  LGEVEIP----LSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 149 KPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSPYSI--ILFRLLDHRTFRRD 204
           K +PY+++ +    K+ K T+VVKNT  P WNE FT  V+   +  +   + D+  F +D
Sbjct: 19  KSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAELRIEVYDYDRFGKD 78

Query: 205 CTIGE 209
             IGE
Sbjct: 79  DFIGE 83

Length = 85

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR 203
           P+P+  + VD     +T V K T  PKWNE F + V P SII  ++ D + F++
Sbjct: 21  PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKK 74

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 59.8 bits (145), Expect = 6e-11
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 149 KPNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRD 204
           K +PY+++ +D    +   T+VVKNT  P WNE F   V P   + +   + D   F RD
Sbjct: 20  KSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD 79

Query: 205 CTIGEKRLNIYGVLAHY 221
             IG+  + +  +L   
Sbjct: 80  DFIGQVTIPLSDLLLGG 96

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
            LP GWE R  PDGR Y+ NH+ + TQWE PR
Sbjct: 1   PLPPGWEERKDPDGRPYYYNHETKETQWEKPR 32

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 20/30 (66%), Positives = 22/30 (73%)

Query: 598 PSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
           P GWE R  PDGRVY+ NH  + TQWEDPR
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30

Length = 31

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 20/30 (66%), Positives = 22/30 (73%)

Query: 374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           LPPGWE R DT GR YY +HNT  + WERP
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
           PLPPGWE R+D  GR YY +H T+ + WE+P+ 
Sbjct: 1   PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 17/30 (56%), Positives = 18/30 (60%)

Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
           LP GWE R   DGR Y+ NH    TQWE P
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGWE R+DP GR YY +H T+ T W++P
Sbjct: 1   PLPPGWEERKDPDGRPYYYNHETKETQWEKP 31

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGWE R+DP GR YY +H T+ T W++P
Sbjct: 1   PLPPGWEERKDPDGRPYYYNHETKETQWEKP 31

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
           PLPPGWE R   DG  Y+ +H T+ T +E PR 
Sbjct: 1   PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 19/30 (63%), Positives = 21/30 (70%)

Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           LPPGWE R D  GR YY +HNT  T W+RP
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 19/30 (63%), Positives = 21/30 (70%)

Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           LPPGWE R D  GR YY +HNT  T W+RP
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 407 PPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PPGWE R DP GRVYY +HNT+ T W+ P
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDP 29

Length = 31

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 512 PPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PPGWE R DP GRVYY +HNT+ T W+ P
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDP 29

Length = 31

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 644 PPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
           PPGWE R+  DG  Y+ +HNT+ T +EDPR 
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31

Length = 31

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 375 PPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
           PPGWE R D  GR YY +HNT+ + WE P+ 
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31

Length = 31

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDP 672
           LPPGWE R   DG  Y+ +HNT  T +E P
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 150 PNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSPYSIIL-FRLLDHRTFRRDCT 206
            +PY+   +     +   T+V K+T  P WNE   +LV+  +  L   + D    R+D  
Sbjct: 24  VDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82

Query: 207 IGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRV 240
           IG    +    L+      E   +T +L+ + + 
Sbjct: 83  IGTAEFD----LSSLLQNPEQENLTKNLLRNGKP 112

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification]

 Score = 53.5 bits (128), Expect = 4e-07
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 378 WEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWE--LRRDP-------RGRVYYVDHNTR 428
           WE  +   GR YY +  T  SSWE+P+ L  G E  L  DP        G+VYY +  TR
Sbjct: 17  WEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITR 76

Query: 429 STTWQRPNSERLQHFKHWQ--GERAHVVSQGSQ-----------RFLYPQHGVGVSSSSA 475
            + W+ P   +       Q   ER+ +   G+            ++L  +       +S 
Sbjct: 77  ESRWKIPPERKKVEPIAEQKHDERSMIGGNGNDMAITDHETSEPKYLLGRLMSQYGITST 136

Query: 476 VSFSTGVTEEDADTYGRRYYVDHNTRSS-SWERPQPL---PPGWELRRDPRGR 524
                 +T+E+A+        ++   S+    R       P  W +  DP  R
Sbjct: 137 KDAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEELRDPRYWMVDTDPLWR 189

Length = 590

>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification]

 Score = 52.4 bits (125), Expect = 1e-06
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPGWE--LRRDP-------RGRVYYVDHNTRS 534
           EE     GR YY +  T  SSWE+P+ L  G E  L  DP        G+VYY +  TR 
Sbjct: 18  EELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRE 77

Query: 535 TTWQRPNSER 544
           + W+ P   +
Sbjct: 78  SRWKIPPERK 87

Length = 590

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCT 206
             +PY ELY++ K   TTRV K T  P WN     LV+    S +   + D R  R D  
Sbjct: 12  LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR-DRHDPV 70

Query: 207 IGE 209
           +G 
Sbjct: 71  LGS 73

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE  DT GR YY +HNT  + WERP
Sbjct: 6   EERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 46.7 bits (110), Expect = 5e-05
 Identities = 49/241 (20%), Positives = 78/241 (32%), Gaps = 41/241 (17%)

Query: 241 SPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVLNEGIRARSRPPGSENTA-CPP 299
           SPP  +    P   +      SP+   NT VV S  SVL   +       GS  T+  P 
Sbjct: 541 SPPTGTTS-VPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG 599

Query: 300 PPHHNHSSPSISSSQ-------------QQHTQVSNGAVQCTSSSSSSSAALPPIDLAQE 346
            P  +HS+P  +S+              +  T+ +  +V  T+  S+ S    P   +Q 
Sbjct: 600 IPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETP-SVPSTTHVSTLSPGPGPGTTSQV 658

Query: 347 AGASGGTTSPRAAQSN---GLPP--ALPPEEPLPPGWEIRQDTYGRRYYVDH-------- 393
           +G    +TS    + +   G+P   A  P  P      +   T                 
Sbjct: 659 SGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGST 718

Query: 394 ------------NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
                         R++ +     LPP    +  PR         T+  T   P ++   
Sbjct: 719 LMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPD 778

Query: 442 H 442
           H
Sbjct: 779 H 779

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 152 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGEK 210
           PY+ L +  +  KT RV+K    P WNEE T+ V +P + +   + D  TF +D ++GE 
Sbjct: 24  PYVVLTLGNQKVKT-RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEA 82

Query: 211 RLNI 214
            +++
Sbjct: 83  EIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR 203
              +P+PY+EL V  K  + ++V + T  P W E FT LV       +   + D +T   
Sbjct: 17  STKEPSPYVELTVG-KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--- 72

Query: 204 DCTIGEKRLNI 214
             ++G   L +
Sbjct: 73  GKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP 510
           EE  D  GR YY +HNT+ + WE P+ 
Sbjct: 5   EERWDPDGRVYYYNHNTKETQWEDPRE 31

Length = 31

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 146 GLLKPNPY--IELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLD 197
           G    +PY  + L    K    K T V K T  P +NE F+  V    +    ++  ++D
Sbjct: 31  GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90

Query: 198 HRTFRRDCTIG 208
             +  R+  IG
Sbjct: 91  KDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 488 DTYGRRYYVDHNTRSSSWERPQP 510
           D  GR YY +H T+ + WE+P+ 
Sbjct: 11  DPDGRPYYYNHETKETQWEKPRE 33

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 111 IYRHYTRNSKQTTRVVKNTYQPKWNEEFTV 140
           +     +   + T+VVKNT  P WNE FT 
Sbjct: 26  VSLGGQKKDTKKTKVVKNTLNPVWNETFTF 55

Length = 85

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 164 KTTRVVKNTYQPKWNEE--FTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNI 214
           K T V K T  P +NE   F    SP      II   + D R+ R D  IG  +L++
Sbjct: 34  KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176068 cd08686, C2_ABR, C2 domain in the Active BCR (Breakpoint cluster region) Related protein

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 144 GGGLLKP-NPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTV 183
             G  +  N Y  L VD    +     TRV ++T +P WNEEF +
Sbjct: 8   AQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEI 52

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRDC 205
           L  P+   E+     +   T+ +K T  PKWNEEF   V+P    +LF + D     RD 
Sbjct: 29  LYDPDGNGEI-----DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDD 83

Query: 206 TIGE 209
            +G+
Sbjct: 84  FLGQ 87

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 163 PKTTRVVKNTYQPKWNEEFTVLVSPY------SIILFRLLDHRTFRRDCTIGE 209
              T+V K T  P ++E F   V P       +++LF + D+     +   GE
Sbjct: 56  TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGE 108

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 146 GLLKPNPYIELYVDYKNPKTTRVVKN--TYQPKWNEEFTVLVSPYSI------ILFRLLD 197
              K   Y  +++D  + ++T V ++  T  P WNE     +    +      +   +  
Sbjct: 17  LFGKMKVYAVVWIDPSHKQSTPVDRDGGTN-PTWNETLRFPLDERLLQQGRLALTIEVYC 75

Query: 198 HRTFRRDCTIGEKRL 212
            R    D  IGE R+
Sbjct: 76  ERPSLGDKLIGEVRV 90

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 150 PNPYIELYVDYKNPK-TTRVVKNTYQPKWNEE--FTVLVSP-YSIILFRLLDHRTFRRDC 205
            +PY+E  V +   K  T V KN+Y P+WNE+  F  +  P    I  ++ D      D 
Sbjct: 35  VDPYVE--VSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDD 92

Query: 206 TIGEKRLNI 214
            IG   +++
Sbjct: 93  VIGTHFIDL 101

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 143 QGGGLL-KPNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP 187
             G LL  P+ Y+EL++   + +   T+ +KN+  P WNE F   +  
Sbjct: 13  TKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 149 KPNPYIELYVDYKNPK---TTRVVKNTYQPKWNEEFTVLVSPYS--IILFRLLDHRTFRR 203
             +PY+ L VD    +    TR + +T  P+W+EEF + V       I   + D     +
Sbjct: 21  LSDPYVTL-VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79

Query: 204 DCTIG 208
               G
Sbjct: 80  HDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	994
COG5021	872	HUL4 Ubiquitin-protein ligase [Posttranslational m	100.0
KOG0939|consensus	720		100.0
cd00078	352	HECTc HECT domain; C-terminal catalytic domain of	100.0
KOG0941|consensus	850		100.0
KOG0942|consensus	1001		100.0
smart00119	336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	100.0
KOG4427|consensus	1096		100.0
KOG0940|consensus	358		100.0
KOG0170|consensus	621		100.0
PF00632	317	HECT: HECT-domain (ubiquitin-transferase); InterPr	100.0
KOG0943|consensus	3015		99.91
COG5021	872	HUL4 Ubiquitin-protein ligase [Posttranslational m	99.89
KOG0942|consensus	1001		99.85
KOG0939|consensus	720		99.83
KOG0941|consensus	850		99.83
smart00119	336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	99.81
KOG4427|consensus	1096		99.81
cd00078	352	HECTc HECT domain; C-terminal catalytic domain of	99.79
KOG0170|consensus	621		99.7
PF00632	317	HECT: HECT-domain (ubiquitin-transferase); InterPr	99.69
KOG1030|consensus	168		99.64
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.61
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.57
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.56
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.56
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.55
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.51
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.51
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.5
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.49
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.49
KOG3209|consensus	984		99.49
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.49
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.48
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.47
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.47
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.47
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.46
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.45
KOG1891|consensus	271		99.45
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.45
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.43
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.43
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.43
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.43
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.42
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.41
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.41
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.41
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.41
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.41
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.41
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.4
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.39
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.38
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.38
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.37
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.37
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.37
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.37
KOG3209|consensus	984		99.37
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.36
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.36
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.35
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.35
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.34
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.34
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.33
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.33
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.33
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.33
KOG0940|consensus	358		99.32
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.32
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.31
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.31
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.3
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.3
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.29
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.29
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.28
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.27
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.26
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.25
PLN03008	868	Phospholipase D delta	99.23
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.23
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.22
KOG0696|consensus	683		99.22
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.22
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.2
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.19
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.19
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.19
KOG1891|consensus	271		99.19
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.18
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.18
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.16
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.16
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.16
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.15
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.13
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.13
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.12
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.1
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.1
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.08
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.07
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.06
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.06
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.05
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.05
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.03
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.02
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	98.99
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	98.99
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	98.96
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	98.95
KOG1028|consensus	421		98.93
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	98.92
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	98.91
KOG0943|consensus	3015		98.9
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	98.89
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	98.86
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.73
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.71
KOG1011|consensus	1283		98.69
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	98.68
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.67
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.66
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	98.63
PLN02223	537	phosphoinositide phospholipase C	98.59
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	98.57
PLN02952	599	phosphoinositide phospholipase C	98.49
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.42
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	98.37
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.36
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.35
PLN02230	598	phosphoinositide phospholipase C 4	98.32
PLN02222	581	phosphoinositide phospholipase C 2	98.32
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.27
cd00201	31	WW Two conserved tryptophans domain; also known as	98.25
KOG2059|consensus	800		98.22
cd00201	31	WW Two conserved tryptophans domain; also known as	98.19
KOG0155|consensus	617		98.19
KOG1031|consensus	1169		98.1
KOG1028|consensus	421		98.08
PLN02228	567	Phosphoinositide phospholipase C	98.06
PLN02270	808	phospholipase D alpha	98.06
KOG1328|consensus	1103		98.04
KOG0169|consensus	746		97.95
KOG1328|consensus	1103		97.85
KOG2059|consensus	800		97.77
PLN02964	644	phosphatidylserine decarboxylase	97.48
KOG1264|consensus	1267		97.46
KOG3259|consensus	163		97.46
KOG3259|consensus	163		97.4
KOG0155|consensus	617		96.98
PLN02352	758	phospholipase D epsilon	96.94
KOG0905|consensus	1639		96.88
KOG1013|consensus	362		96.84
KOG3837|consensus	523		95.96
KOG1326|consensus	1105		95.5
KOG1011|consensus	1283		94.87
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	94.75
KOG1326|consensus	1105		94.4
KOG1327|consensus	529		92.95
KOG2060|consensus	405		92.85
KOG1013|consensus	362		92.64
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	91.04
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	88.84
KOG1327|consensus	529		84.88
KOG1924|consensus	1102		83.36
PF15627	156	CEP76-C2: CEP76 C2 domain	83.12
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	81.06

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-78  Score=724.74  Aligned_cols=477  Identities=35%  Similarity=0.556  Sum_probs=391.3

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhccccccccccccccc--CCccc-cCCCCCCCcCCCCccc-c
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ--GSQRF-LYPQHGVGVSSSSAVS-F  583 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q--~~~r~-~~~~~~~~~~~~~~~~-~  583 (994)
                      -..++++|+.+.+.-|++||++|.+..++|..|.....-..    +. .....+  ..... ..+.+.....-..+.. +
T Consensus       296 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~  370 (872)
T COG5021         296 LLRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGE----ST-SFLVVNNDDSSSIKDLPHQVGSNPFLEAHPEF  370 (872)
T ss_pred             cccccccccchhhhcchhhhhhhhhhhhhhhhccchhhhhh----hh-hhccccccchhhhhhcccccCCcccccccHHH
Confidence            34689999999999999999999999999999965422110    00 000000  00000 0000000000000000 0


Q ss_pred             CCC---cc-cccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccc-------------cccCCCCCCCCCC
Q psy16327        584 STG---VT-EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI-------------GQIGADEPPLPPG  646 (994)
Q Consensus       584 ~~~---~~-~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~-------------~~~~~~~~~LP~g  646 (994)
                      +..   +. ...-.....|.+|+..+...++.+++++.+..+.|++|+.+....             .+....+++|+.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  450 (872)
T COG5021         371 SELLKNQSRGTTRDFRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSG  450 (872)
T ss_pred             HHHHhhhcccccchhhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccch
Confidence            000   00 001112467999999999999999999999999999998743100             0111367899999


Q ss_pred             cceeeccCcceeeeccCCCccccCCCCCCCCCCCCCccCCccccchhhhhhhhhhhhhhccCCCCCceEEEecCCccchH
Q psy16327        647 WEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED  726 (994)
Q Consensus       647 We~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~~~~~~~~~~~~~f~~k~~~fr~~~~~~~~~~~~~i~V~R~~i~ed  726 (994)
                      |++|+....+.|++.|.+..++|.+++.+.....+..  ...++.+.++.|+.+++.. ......+.++|.|||++||+|
T Consensus       451 ~~~r~~~~~~~~~~~h~k~~~~~~~~~~g~~~~~~~~--~~~r~~~~~r~~l~~~~~~-~~~~~~~~l~I~VrRd~vf~D  527 (872)
T COG5021         451 WKTRLNNLYRFYFVEHRKKTLTKNDSRLGSFISLNKL--DIRRIKEDKRRKLFYSLKQ-KAKIFDPYLHIKVRRDRVFED  527 (872)
T ss_pred             HHHHhhhhheeeehhcccceeeecCCCCchhhhhchh--HHHHHHHHHHHHHHHHHhh-hccccCcceEEEEecccchHH
Confidence            9999999999999999999999999996554433310  1234555666666666554 334567899999999999999


Q ss_pred             hHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHH
Q psy16327        727 SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKF  806 (994)
Q Consensus       727 s~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~f  806 (994)
                      +|++|+...+.++|++|+|+|.||+|+|+||++||||++|+++||+|+||||+++..+.|++++||.+.+||+||+||+|
T Consensus       528 sy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~f  607 (872)
T COG5021         528 SYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKF  607 (872)
T ss_pred             HHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeee
Q psy16327        807 IGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHEL  886 (994)
Q Consensus       807 iGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL  886 (994)
                      |||+||+||||++.||++|+.+|||+||+++++++||+++||++|++|+||+++++++..++++|+++.+.+|..++|||
T Consensus       608 iGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~l~Fsve~~~fg~~~tVeL  687 (872)
T COG5021         608 LGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVEL  687 (872)
T ss_pred             HHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceeeeeEEEeecccCceeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999986799999999999999999999


Q ss_pred             ccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc------------eeee
Q psy16327        887 KENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE------------RAIV  918 (994)
Q Consensus       887 ~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG------------~t~y  918 (994)
                      ||||++|.||++||+|||.+|+                .||                    |||            +|.|
T Consensus       688 ipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y  767 (872)
T COG5021         688 IPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAY  767 (872)
T ss_pred             ccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccc
Confidence            9999999999999999999998                366                    677            7888


Q ss_pred             cC---------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecCCC-CCCcEEeccccccc
Q psy16327        919 RR---------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGKD-TWLPRSHTCFNRLD  967 (994)
Q Consensus       919 ~~---------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~-~~LP~A~TCfn~L~  967 (994)
                      ++                           ||   ++|+|++||+.|++++  |+++|+|++.+.+ ++||+||||||+|+
T Consensus       768 ~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~--~~~kf~I~~~g~~~~rLP~ahTCFN~L~  845 (872)
T COG5021         768 HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSD--GVRKFTIEKGGTDDDRLPSAHTCFNRLK  845 (872)
T ss_pred             cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCc--ccceeeeecCCCccccCCchhhhhhhcc
Confidence            86                           22   8999999999999999  9999999999876 56999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327        968 LPPYKSYDQMVEKLNYAIEETEGFGQE  994 (994)
Q Consensus       968 LP~Y~s~e~L~eKL~~AI~~~~GFg~~  994 (994)
                      ||+|+|||+|++||++||+||.|||++
T Consensus       846 LP~YsSke~Lr~kL~~AI~Eg~GFg~~  872 (872)
T COG5021         846 LPEYSSKEKLRSKLLTAINEGAGFGLL  872 (872)
T ss_pred             CCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence            999999999999999999999999985

>KOG0939|consensus

Probab=100.00  E-value=2.1e-62  Score=557.00  Aligned_cols=305  Identities=39%  Similarity=0.624  Sum_probs=285.1

Q ss_pred             Cccccchhhhhhhhhhhhhhcc-CCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHH
Q psy16327        686 VPKAYERSFRWKLSQFRYLCHH-NVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFF  764 (994)
Q Consensus       686 ~~~~~~~~f~~k~~~fr~~~~~-~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~  764 (994)
                      +..+-..+|+.|+.+|+..+++ .+..+.+.|.|+|+.||+|+|+++...++++++.+|.|+|.||+|+|+||+.||||.
T Consensus       335 ~~~~~ll~F~~Kr~yf~r~L~~~~~~~~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~  414 (720)
T KOG0939|consen  335 LKNPMLLDFDNKRKYFKRELRKEHASSEKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQ  414 (720)
T ss_pred             eecCcceecccHHHHHHHHHHHhhccCCcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHH
Confidence            3456677999999999986643 334678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhh
Q psy16327        765 LLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIE  844 (994)
Q Consensus       765 ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~  844 (994)
                      +|+++||||+|+||....++.-++.|||+|+++|+||.||+|+||++|||||+|+++++.|++.|||+|||.++++.|++
T Consensus       415 ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~e  494 (720)
T KOG0939|consen  415 LLSREIFNPRYALFTTVGSDQTTFHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDME  494 (720)
T ss_pred             HHHHHHcCCCcceEEEcCCCceEEeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehh
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------
Q psy16327        845 SIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------  908 (994)
Q Consensus       845 ~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------  908 (994)
                      +.||++|++|+||++|++++. |+++|+.+.+.+|..+.+||||||++|.||++||.|||++++                
T Consensus       495 s~DP~y~k~l~~il~ndis~~-l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv~q~rL~~~ir~ql~afl  573 (720)
T KOG0939|consen  495 SADPEYYKSLVWILKNDISDT-LELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLVTQYRLTNSIRKQLDAFL  573 (720)
T ss_pred             hcChHHhhceeehhcCCcccc-eeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999985 999999999999999999999999999999999999999988                


Q ss_pred             hcc--------------------ccc-----------eeeecC---------------------------ee---eeccC
Q psy16327        909 SGS--------------------SCE-----------RAIVRR---------------------------EP---VCFSS  927 (994)
Q Consensus       909 ~G~--------------------lcG-----------~t~y~~---------------------------qi---s~r~P  927 (994)
                      .||                    +||           ||+|.+                           ||   ++++|
T Consensus       574 ~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP  653 (720)
T KOG0939|consen  574 AGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVP  653 (720)
T ss_pred             HHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCC
Confidence            244                    888           677764                           22   89999


Q ss_pred             CCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcC-CCCCC
Q psy16327        928 LPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET-EGFGQ  993 (994)
Q Consensus       928 ~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~-~GFg~  993 (994)
                      ++||+.|.|.+  |.++|.|++.. ..++||+||||||+|+||.|.|||+|+++|+.||+|| +|||+
T Consensus       654 ~~GF~~l~g~n--g~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllAi~E~segfg~  719 (720)
T KOG0939|consen  654 LGGFAALEGMN--GVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESLLLAINEGSEGFGM  719 (720)
T ss_pred             cccccccccCC--cceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHHHHHHHhhhhccCc
Confidence            99999999988  99999999987 6799999999999999999999999999999999994 89996

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

Probab=100.00  E-value=2.1e-57  Score=516.75  Aligned_cols=272  Identities=42%  Similarity=0.735  Sum_probs=251.0

Q ss_pred             eEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCC
Q psy16327        714 IKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPA  793 (994)
Q Consensus       714 ~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~  793 (994)
                      .+|+|||++||+|++++|.+..+.+|+++|+|+|.||.|+|+|||+||||++|++|++++.++||+.++++...+++||.
T Consensus         1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~~~p~   80 (352)
T cd00078           1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPS   80 (352)
T ss_pred             CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEEeCCC
Confidence            37999999999999999999988889999999999999999999999999999999999999999988875567889999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEE
Q psy16327        794 SYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV  873 (994)
Q Consensus       794 s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~  873 (994)
                      +...++++++|+|+|++||+||+++.+++++|+++|||+|+|.+++++||+++||++|++|++|++++.+...++++|++
T Consensus        81 ~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~l~F~~  160 (352)
T cd00078          81 SFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTI  160 (352)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhcceeEE
Confidence            88778899999999999999999999999999999999999999999999999999999999999988743468899999


Q ss_pred             EEEe-cceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--
Q psy16327        874 DFEI-LGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE--  914 (994)
Q Consensus       874 ~~~~-~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG--  914 (994)
                      .... .|...++||+|||+++.||.+||++||++++                +||                    +||  
T Consensus       161 ~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~  240 (352)
T cd00078         161 ELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSE  240 (352)
T ss_pred             EEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCC
Confidence            8877 8888999999999999999999999999988                355                    899  


Q ss_pred             ---------eeeecC----------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecCC-C
Q psy16327        915 ---------RAIVRR----------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGK-D  953 (994)
Q Consensus       915 ---------~t~y~~----------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~-~  953 (994)
                               ++.|.+                            +|   ++|+|++||+.+.       ++|+|.+.+. +
T Consensus       241 ~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~-------~~i~i~~~~~~~  313 (352)
T cd00078         241 DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLN-------PKFTIRRVGSPD  313 (352)
T ss_pred             CCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcC-------CCeEEEECCCCC
Confidence                     677764                            01   8899999999874       6899998876 8


Q ss_pred             CCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCC
Q psy16327        954 TWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG  992 (994)
Q Consensus       954 ~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg  992 (994)
                      ++||+||||||+|+||.|+|+|+|++||++||++|+|||
T Consensus       314 ~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~gF~  352 (352)
T cd00078         314 DRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG  352 (352)
T ss_pred             CCCCcchhhhccccCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence            899999999999999999999999999999999999997

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.

>KOG0941|consensus

Probab=100.00  E-value=1.7e-56  Score=518.83  Aligned_cols=272  Identities=33%  Similarity=0.561  Sum_probs=248.2

Q ss_pred             CCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceee
Q psy16327        710 LPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQ  789 (994)
Q Consensus       710 ~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~  789 (994)
                      ..++++|+|||++|++|++++|......||||.|+|+|.||+|+|+||+.||||.+|.+||++|.||||++..+.+ ++|
T Consensus       498 ~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~-~~W  576 (850)
T KOG0941|consen  498 VSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESS-LLW  576 (850)
T ss_pred             CCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccc-eee
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999998875 567


Q ss_pred             eCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCcc--ce
Q psy16327        790 INPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDEC--GL  867 (994)
Q Consensus       790 ~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~--~l  867 (994)
                      +++......   .+|.+||++||+|||+...++++||.+|||+||+++++++||.++.|.++++|+.|++...++.  .+
T Consensus       577 F~~~~~~~~---~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f  653 (850)
T KOG0941|consen  577 FNPSPFEEE---KQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVF  653 (850)
T ss_pred             ecCCCCCcc---ceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhhe
Confidence            877664332   3788999999999999999999999999999999999999999999999999999998655332  69


Q ss_pred             eeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------
Q psy16327        868 ELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------  911 (994)
Q Consensus       868 ~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------  911 (994)
                      +++|++..+.+|...+++|+|||.+|+||.+||+|||.+|+                +||                    
T Consensus       654 ~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~l  733 (850)
T KOG0941|consen  654 DLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKL  733 (850)
T ss_pred             eeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHH
Confidence            99999999999999999999999999999999999999998                366                    


Q ss_pred             ccc-----------eeeecC----------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeee
Q psy16327        912 SCE-----------RAIVRR----------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEK  949 (994)
Q Consensus       912 lcG-----------~t~y~~----------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~  949 (994)
                      +||           +|.|++                            ||   ++|+|++|.+.|         ++.|++
T Consensus       734 i~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l---------~~~i~~  804 (850)
T KOG0941|consen  734 ICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL---------KLVIQK  804 (850)
T ss_pred             HhCCCccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc---------eEEEec
Confidence            788           455654                            11   899999999876         589999


Q ss_pred             cCC-CCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327        950 VGK-DTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE  994 (994)
Q Consensus       950 ~~~-~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~  994 (994)
                      .+. .++||+||||||.|+||.|+|+|.|++||+.||++++|||+.
T Consensus       805 ~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~GF~l~  850 (850)
T KOG0941|consen  805 NGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEGFGLL  850 (850)
T ss_pred             CCCCcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccCcCCC
Confidence            886 579999999999999999999999999999999999999973

>KOG0942|consensus

Probab=100.00  E-value=1.9e-56  Score=518.56  Aligned_cols=298  Identities=29%  Similarity=0.472  Sum_probs=268.3

Q ss_pred             ccccchhhhhhhhhhhhhhccC------CC----CCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeC-----cc
Q psy16327        687 PKAYERSFRWKLSQFRYLCHHN------VL----PSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG-----EE  751 (994)
Q Consensus       687 ~~~~~~~f~~k~~~fr~~~~~~------~~----~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~G-----E~  751 (994)
                      .+||..+|..++..|..++...      ..    .....++|||++|+||||.++......+||..++|+|++     |+
T Consensus       603 e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd~f~p~~e~dlk~~iRVtfVne~G~~Ea  682 (1001)
T KOG0942|consen  603 EIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFDAFSPKGEPDLKSSIRVTFVNEHGVDEA  682 (1001)
T ss_pred             cCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHHhcCccCCcccccceEEEEecccCcccc
Confidence            5789999999999999876532      11    122689999999999999999998888899999999975     88


Q ss_pred             cccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCC--CchhhHHHHHHHHHHHHHHhcCCccccCCCHHH
Q psy16327        752 GLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV--NPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPF  829 (994)
Q Consensus       752 GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~--~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f  829 (994)
                      |||.||++|||++.|+++.|||+||||..+.+  +-++|||.+..  ..+++++|.||||+||||||+|.+++++|+.+|
T Consensus       683 GIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~--~lLYPNp~~~~l~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FF  760 (1001)
T KOG0942|consen  683 GIDGGGIFKEFLTELLKTAFDPNYGLFKETED--HLLYPNPTAAMLLDVDCLKHYYFLGRLLGKCIYEGILVDVPFAEFF  760 (1001)
T ss_pred             CccCcccHHHHHHHHHHhhcCccccceeeccc--ceecCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcceecccHHHHH
Confidence            99999999999999999999999999998764  56899998763  456899999999999999999999999999999


Q ss_pred             HHHHhccCC--ChhhhhccChHhHhhHHHHHhcCCCc-cceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHH
Q psy16327        830 YKRMLNKKL--VMKDIESIDPEFYNSLVWIRDNNIDE-CGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRW  906 (994)
Q Consensus       830 ~k~Ll~~~~--tl~DL~~vDp~l~~sL~~l~~~~~~~-~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l  906 (994)
                      .++|+|..-  .++||.++||++|++|..|++++.++ .+|+|+|++....+|+.+.|||||||++|+||.+|+.+||++
T Consensus       761 laKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihL  840 (1001)
T KOG0942|consen  761 LAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHL  840 (1001)
T ss_pred             HHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHH
Confidence            999999875  99999999999999999999988744 379999999999999999999999999999999999999999


Q ss_pred             HH----------------hcc--------------------ccc------------eeeecC------e-------e---
Q psy16327        907 YG----------------SGS--------------------SCE------------RAIVRR------E-------P---  922 (994)
Q Consensus       907 ~~----------------~G~--------------------lcG------------~t~y~~------q-------i---  922 (994)
                      |+                .||                    |.|            ||+|.+      +       |   
T Consensus       841 VsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~  920 (1001)
T KOG0942|consen  841 VSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEE  920 (1001)
T ss_pred             hhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHh
Confidence            98                265                    556            888854      0       0   


Q ss_pred             ---------------eeccCCCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHH
Q psy16327        923 ---------------VCFSSLPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE  986 (994)
Q Consensus       923 ---------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~  986 (994)
                                     ++|.|+.||+.|+       ++|||+..| ++++||||+||.|.|+||+|+++++||+||+|||+
T Consensus       921 F~~edKr~fLKFVTscsRpPllGFK~L~-------P~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKLlYAI~  993 (1001)
T KOG0942|consen  921 FSDEDKRKFLKFVTSCSRPPLLGFKALD-------PAFCIRNAGSDDDRLPTASTCMNLLKLPPYSNKTLLREKLLYAIN  993 (1001)
T ss_pred             cchHHHHHHHHHHhcCCCcccccchhcC-------ccceeeeCCCccccCCcHHHHHHHhcCCCcccHHHHHHHHHHHHh
Confidence                           7899999999996       689999998 56899999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy16327        987 ETEGFGQ  993 (994)
Q Consensus       987 ~~~GFg~  993 (994)
                      -+.||+|
T Consensus       994 sgAGFeL 1000 (1001)
T KOG0942|consen  994 SGAGFEL 1000 (1001)
T ss_pred             cccCCCC
Confidence            9999997

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with

Probab=100.00  E-value=1.1e-52  Score=473.24  Aligned_cols=249  Identities=46%  Similarity=0.791  Sum_probs=223.4

Q ss_pred             ccccCce-eEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCC-CchhhHHHHHHHHHHHH
Q psy16327        736 AYELRRR-LYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV-NPDHLLYFKFIGRFIAM  813 (994)
Q Consensus       736 ~~~l~~~-l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~-~~~~l~~f~fiGrlig~  813 (994)
                      ..++|++ |+|+|.||+|+|+|||+||||++|++|+++|+++||++++++ ..+++||.+.. +++|+++|+|+|++||+
T Consensus         4 ~~~~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~-~~~~~~p~~~~~~~~~l~~f~~~G~lig~   82 (336)
T smart00119        4 DEDLKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND-YLLYPNPRAFFANPEHLAYFRFIGRVLGK   82 (336)
T ss_pred             hHHhCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCC-CeEEeCCCccccchHHHHHHHHHHHHHHH
Confidence            4578888 999999999999999999999999999999999999988764 46789998764 57899999999999999


Q ss_pred             HHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHH-HhcCCCccceeeEEEEEE-EecceeEeeeeccCCc
Q psy16327        814 ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWI-RDNNIDECGLELYLSVDF-EILGQVIHHELKENGD  891 (994)
Q Consensus       814 ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l-~~~~~~~~~l~l~F~~~~-~~~g~~~~~eL~~~G~  891 (994)
                      ||+++.+++++|+++|||+|+|.+++++||+++||++|++|++| ++++..+ .++++|++.. ...|...++||++||+
T Consensus        83 al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~-~~~l~F~~~~~~~~g~~~~~eL~~~G~  161 (336)
T smart00119       83 ALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSE-ELDLTFSIVLTSEFGQVKVVELKPGGS  161 (336)
T ss_pred             HHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcc-cccceEEEEeeecCCCcceEecCCCCC
Confidence            99999999999999999999999999999999999999999999 5666554 4889998654 3477788999999999


Q ss_pred             eeeeccchHHHHHHHHH----------------hcc--------------------ccc-----------eeeecC----
Q psy16327        892 KIRVCEENKEEYMRWYG----------------SGS--------------------SCE-----------RAIVRR----  920 (994)
Q Consensus       892 ~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG-----------~t~y~~----  920 (994)
                      ++.||.+||++||++++                +||                    +||           ++.|.+    
T Consensus       162 ~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~  241 (336)
T smart00119      162 NIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSE  241 (336)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCC
Confidence            99999999999999987                355                    798           677863    


Q ss_pred             ------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCC
Q psy16327        921 ------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYK  972 (994)
Q Consensus       921 ------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~  972 (994)
                                              +|   ++|+|++||+.+.       ++|+|.+.+ ++++||+||||||+|+||.|+
T Consensus       242 ~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~-------~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Ys  314 (336)
T smart00119      242 NSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALS-------PKFTIRKAGSDDDRLPTAHTCFNRLKLPPYS  314 (336)
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcC-------CceEEEECCCCCCCCCccccccCcCcCCCCC
Confidence                                    11   8899999999874       479999876 578999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCC
Q psy16327        973 SYDQMVEKLNYAIEETEGFGQ  993 (994)
Q Consensus       973 s~e~L~eKL~~AI~~~~GFg~  993 (994)
                      |+|+|++||++||++|+||||
T Consensus       315 s~e~l~~kL~~AI~~~~gF~l  335 (336)
T smart00119      315 SKEILREKLLLAINEGKGFGL  335 (336)
T ss_pred             CHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999997

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.

>KOG4427|consensus

Probab=100.00  E-value=7.8e-52  Score=467.35  Aligned_cols=300  Identities=29%  Similarity=0.465  Sum_probs=268.3

Q ss_pred             CccccchhhhhhhhhhhhhhccC-----------CCCC-ceEEEecCCccchHhHHHhhcCCccccCceeEEEEeC----
Q psy16327        686 VPKAYERSFRWKLSQFRYLCHHN-----------VLPS-HIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG----  749 (994)
Q Consensus       686 ~~~~~~~~f~~k~~~fr~~~~~~-----------~~~~-~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~G----  749 (994)
                      ..+|.+.+++.++..||.+.+..           +.|. ...|.|||++|+||.|+||.++....||..++|+|++    
T Consensus       672 ~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl  751 (1096)
T KOG4427|consen  672 TKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGL  751 (1096)
T ss_pred             ccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCC
Confidence            34688899999999999876542           2233 3799999999999999999999988899999999986    


Q ss_pred             -cccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHH
Q psy16327        750 -EEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMP  828 (994)
Q Consensus       750 -E~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~  828 (994)
                       |.|||+||+++||+.++.+.+|+|.++||..+..++ .++|+|.|+..++||++|+|+||++|+|+|+|+.+|++|+..
T Consensus       752 ~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~-~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~v  830 (1096)
T KOG4427|consen  752 DEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDR-RLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASV  830 (1096)
T ss_pred             cccccCccchHHHHHHHHHHHHhcccccccccCCCCc-eecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHH
Confidence             778899999999999999999999999999888655 578999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCC--ChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHH
Q psy16327        829 FYKRMLNKKL--VMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRW  906 (994)
Q Consensus       829 f~k~Ll~~~~--tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l  906 (994)
                      |..+|||..-  .+++|.++|||+|++|.+++..+.+-.+|+|+|+++.+..|.+.++||+|||+.|.||++||..||.+
T Consensus       831 flsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~  910 (1096)
T KOG4427|consen  831 FLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHA  910 (1096)
T ss_pred             HHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHH
Confidence            9999999864  88999999999999999999998888789999999999999999999999999999999999999999


Q ss_pred             HH----------------hcc--------------------ccc------------eeeecC------ee----------
Q psy16327        907 YG----------------SGS--------------------SCE------------RAIVRR------EP----------  922 (994)
Q Consensus       907 ~~----------------~G~--------------------lcG------------~t~y~~------qi----------  922 (994)
                      |+                +||                    |.|            ||.|-+      ++          
T Consensus       911 MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~  990 (1096)
T KOG4427|consen  911 MAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAG  990 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhc
Confidence            98                355                    556            788865      11          


Q ss_pred             ----------------eeccCCCCCCCCCCCCCCCCcceeeee-------------------------cCCCCCCcEEec
Q psy16327        923 ----------------VCFSSLPGHAVFPWEDLPNSWRFCIEK-------------------------VGKDTWLPRSHT  961 (994)
Q Consensus       923 ----------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~-------------------------~~~~~~LP~A~T  961 (994)
                                      ++|.|+.||+-|.       ++|.|..                         ..+-.|||+|+|
T Consensus       991 dFt~eERklfLKFVTSCSrpPlLGFayLe-------PpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaST 1063 (1096)
T KOG4427|consen  991 DFTPEERKLFLKFVTSCSRPPLLGFAYLE-------PPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTAST 1063 (1096)
T ss_pred             cCChHHHHHHHHHHhhcCCCccccccccC-------CCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhh
Confidence                            7899999999996       3555542                         112369999999


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327        962 CFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ  993 (994)
Q Consensus       962 Cfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~  993 (994)
                      |||.|+||.|.-+..|||||+|||..+.||.+
T Consensus      1064 CfNlLKLPnY~kkStlreKLrYAIssntGFEL 1095 (1096)
T KOG4427|consen 1064 CFNLLKLPNYKKKSTLREKLRYAISSNTGFEL 1095 (1096)
T ss_pred             HHHhhhCCCcchhHHHHHHHHHHhhcCCCccc
Confidence            99999999999999999999999999999986

>KOG0940|consensus

Probab=100.00  E-value=1.2e-48  Score=434.06  Aligned_cols=280  Identities=49%  Similarity=0.833  Sum_probs=261.3

Q ss_pred             hhhhhhccCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCcc
Q psy16327        700 QFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFE  779 (994)
Q Consensus       700 ~fr~~~~~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~  779 (994)
                      +|+.+......+++++|+|+|+++|||+|++||+.+++++|+++++.|.||+|+|+||+.||||.++++|+|+|.+|+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~   82 (358)
T KOG0940|consen    3 HFRVLPLPPQGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQ   82 (358)
T ss_pred             cccccccCCCCCceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeee
Confidence            45555344567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHh
Q psy16327        780 YANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRD  859 (994)
Q Consensus       780 ~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~  859 (994)
                      ++.++ |++++||.+.++|+||.+|+|+|++||+|++|+..++.. .++|||.|++++++++|++++|+++|+++.|+++
T Consensus        83 ~~~~~-~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~e  160 (358)
T KOG0940|consen   83 HSRKD-YTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRE  160 (358)
T ss_pred             ecccc-cccccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCcccccccccccc
Confidence            99998 999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH---------------hcc-------------
Q psy16327        860 NNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG---------------SGS-------------  911 (994)
Q Consensus       860 ~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~---------------~G~-------------  911 (994)
                      +++..   +++|+++...+|+..+++|+|+|.++.||.+|+++||.++.               .|+             
T Consensus       161 n~~~~---~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~  237 (358)
T KOG0940|consen  161 NDPTN---DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQNRFERGIQEQLKALLQGFNELLPQSLLRIFD  237 (358)
T ss_pred             CCccc---chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccc
Confidence            99887   79999999999999999999999999999999999998884               133             


Q ss_pred             -------ccc-----------eeeecC------ee------------------------eeccCCCCCCCCCCCCCCCCc
Q psy16327        912 -------SCE-----------RAIVRR------EP------------------------VCFSSLPGHAVFPWEDLPNSW  943 (994)
Q Consensus       912 -------lcG-----------~t~y~~------qi------------------------s~r~P~~Gf~~l~~~~~~~~~  943 (994)
                             +||           +++|++      +|                        ++++|..||+.|.+++  +++
T Consensus       238 e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~--~~~  315 (358)
T KOG0940|consen  238 EMELELALSGDPEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSN--GPR  315 (358)
T ss_pred             hhhHHHHhcCCcccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCC--ccC
Confidence                   666           566654      11                        8999999999999998  999


Q ss_pred             ceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHH
Q psy16327        944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE  986 (994)
Q Consensus       944 ~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~  986 (994)
                      +|||++.+..++||.+|||||+|+||+|.+++.|++||..||+
T Consensus       316 ~~~ie~~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~  358 (358)
T KOG0940|consen  316 KFCIEKWGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE  358 (358)
T ss_pred             ceeecCcccccccchhcccccccccccccchhHHHHHHHHhcC
Confidence            9999998889999999999999999999999999999999985

>KOG0170|consensus

Probab=100.00  E-value=4.1e-43  Score=385.52  Aligned_cols=267  Identities=28%  Similarity=0.402  Sum_probs=217.8

Q ss_pred             CceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCcccc----------
Q psy16327        712 SHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYA----------  781 (994)
Q Consensus       712 ~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~----------  781 (994)
                      ..-|++|+|++||+.+.+.|.....+  +..|+|+|.+|.|.+.| |+-|||+++++|+..+..|||+..          
T Consensus       224 ~RkK~risR~~Il~sa~kvm~~ygss--~~vLEIEY~~EvGTGLG-PTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~  300 (621)
T KOG0170|consen  224 TRKKLRISRKTILASALKVMEKYGSS--KAVLEIEYEEEVGTGLG-PTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQ  300 (621)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhcCC--cceEEEEeccccccCCC-cceeeHHHHHHHHhhccccccccCceeeccCCCC
Confidence            44689999999999999998876543  57899999999999996 999999999999999999999974          


Q ss_pred             CCCCc-----eeeeCCCCCC-----CchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhH
Q psy16327        782 NKNNY-----SLQINPASYV-----NPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFY  851 (994)
Q Consensus       782 ~~~~~-----~~~~np~s~~-----~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~  851 (994)
                      .+..+     .++|.|-...     +...+++|+++|++||+||++++++|++|+.+|||.|+|.+++..|+..|||++.
T Consensus       301 ~~t~~v~~~sgLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~  380 (621)
T KOG0170|consen  301 ENTKDVYITSGLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELA  380 (621)
T ss_pred             CCcchhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHH
Confidence            12221     2445443321     3346889999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhc----------------CCCc--------cceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHH
Q psy16327        852 NSLVWIRDN----------------NIDE--------CGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY  907 (994)
Q Consensus       852 ~sL~~l~~~----------------~~~~--------~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~  907 (994)
                      ++|..|..-                ..++        .+|+|+|+    ..|- ..+||+|||.+++||..|.+|||+.|
T Consensus       381 ~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFT----LPG~-p~ieL~p~g~~~~V~~~NleEYi~~V  455 (621)
T KOG0170|consen  381 KSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFT----LPGF-PDIELIPGGANKPVTISNLEEYIHGV  455 (621)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEe----cCCC-CCeeeccCCCCCccccccHHHHHHHH
Confidence            999877421                1111        13444444    4443 57899999999999999999999999


Q ss_pred             H----------------hcc--------------------ccc------------eeeecC-------------------
Q psy16327        908 G----------------SGS--------------------SCE------------RAIVRR-------------------  920 (994)
Q Consensus       908 ~----------------~G~--------------------lcG------------~t~y~~-------------------  920 (994)
                      +                +||                    +||            |....|                   
T Consensus       456 Id~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f  535 (621)
T KOG0170|consen  456 IDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAF  535 (621)
T ss_pred             HHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhh
Confidence            8                254                    788            222222                   


Q ss_pred             ---------ee---eeccCCCCCCCCCCCCCCCCcceeeeecC------CCCCCcEEeccccccccCCCCCHHHHHHHHH
Q psy16327        921 ---------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVG------KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLN  982 (994)
Q Consensus       921 ---------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~------~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~  982 (994)
                               ||   +.|+|+|||+.|.       ++++|.+.-      .|+.||+++||.|+|+||+|+|+|+|++||.
T Consensus       536 ~~~qQR~FLQFvTGSprLPiGGfasLN-------PklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~  608 (621)
T KOG0170|consen  536 DKEQQRLFLQFVTGSPRLPIGGFASLN-------PKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLL  608 (621)
T ss_pred             chHHHHHHHHHhcCCCCCCCCcccccC-------CCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHHH
Confidence                     22   8999999999984       688887642      3678999999999999999999999999999


Q ss_pred             HHHHcCCC-CCC
Q psy16327        983 YAIEETEG-FGQ  993 (994)
Q Consensus       983 ~AI~~~~G-Fg~  993 (994)
                      +||+|++| |+|
T Consensus       609 ~Ai~EGqgSFhL  620 (621)
T KOG0170|consen  609 YAIEEGQGSFHL  620 (621)
T ss_pred             HHHHcccccccc
Confidence            99999987 875

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []

Probab=100.00  E-value=2.4e-39  Score=364.39  Aligned_cols=222  Identities=38%  Similarity=0.548  Sum_probs=174.9

Q ss_pred             HHHHHHHhCCCCCCccccCCCCceeeeCCCC-------CCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHh-c
Q psy16327        764 FLLSHEVLNPMYCLFEYANKNNYSLQINPAS-------YVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRML-N  835 (994)
Q Consensus       764 ~ll~~el~~p~~~lF~~~~~~~~~~~~np~s-------~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll-~  835 (994)
                      ++||+|||+|+++||..++++. .+++||..       ...+.++++|+|||+|||+||++|.+++++|+++|||+|+ |
T Consensus         1 ~l~~~el~~~~~~lF~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g   79 (317)
T PF00632_consen    1 TLLCKELFDPNLGLFYQTSNNG-LFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSG   79 (317)
T ss_dssp             HHHHHHHTSGGGSSEESSTTTC-EEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T
T ss_pred             CHHHHHhcCccCCCceEcCCCC-EEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcC
Confidence            5899999999999997776655 45566642       2345788999999999999999999999999999999999 9


Q ss_pred             cCCChhhhhccChHhHhhHHHHHhcCCCc---cceeeEEEEEEEe-cceeEeeeeccCCceeeeccchHHHHHHHHH---
Q psy16327        836 KKLVMKDIESIDPEFYNSLVWIRDNNIDE---CGLELYLSVDFEI-LGQVIHHELKENGDKIRVCEENKEEYMRWYG---  908 (994)
Q Consensus       836 ~~~tl~DL~~vDp~l~~sL~~l~~~~~~~---~~l~l~F~~~~~~-~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~---  908 (994)
                      .+++++||+++|++++++|++|++++.++   .+++++|++.... .|...++||++||+++.||.+||++||++++   
T Consensus        80 ~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~  159 (317)
T PF00632_consen   80 EPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYR  159 (317)
T ss_dssp             ----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHH
T ss_pred             CCCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhh
Confidence            99999999999999999999999654332   2478899977543 5667789999999999999999999999987   


Q ss_pred             -------------hcc--------------------ccc------------eeeecC-------------ee--------
Q psy16327        909 -------------SGS--------------------SCE------------RAIVRR-------------EP--------  922 (994)
Q Consensus       909 -------------~G~--------------------lcG------------~t~y~~-------------qi--------  922 (994)
                                   +||                    +||            ++.|.+             ++        
T Consensus       160 l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~  239 (317)
T PF00632_consen  160 LNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEE  239 (317)
T ss_dssp             HTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHH
T ss_pred             cccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHH
Confidence                         255                    888            466663             00        


Q ss_pred             ----------eeccCCCCCCCCCCCCCCCCcceeeeecCC--CCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcC-C
Q psy16327        923 ----------VCFSSLPGHAVFPWEDLPNSWRFCIEKVGK--DTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET-E  989 (994)
Q Consensus       923 ----------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~--~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~-~  989 (994)
                                ++|+|++||+.+.       ++|+|...+.  +++||+||||||+|+||.|+|+|+|++||++||+++ +
T Consensus       240 ~~~fL~F~TG~~~lP~~G~~~l~-------~~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~  312 (317)
T PF00632_consen  240 RRKFLRFVTGSSRLPPGGFSNLN-------PKITIQFSDDSPDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQE  312 (317)
T ss_dssp             HHHHHHHHHSSSSB-TTGGGGGE--------EEEEEEESC-STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT--
T ss_pred             hheeEEEecCCCCCCcccccccc-------ceeEEeecCCCccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence                      8999999999774       6899998876  789999999999999999999999999999999999 9


Q ss_pred             CCCC
Q psy16327        990 GFGQ  993 (994)
Q Consensus       990 GFg~  993 (994)
                      |||+
T Consensus       313 gF~~  316 (317)
T PF00632_consen  313 GFGL  316 (317)
T ss_dssp             ----
T ss_pred             CcCc
Confidence            9997

Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....

>KOG0943|consensus

Probab=99.91  E-value=1.4e-23  Score=244.54  Aligned_cols=185  Identities=26%  Similarity=0.370  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEE-ec
Q psy16327        800 HLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFE-IL  878 (994)
Q Consensus       800 ~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~-~~  878 (994)
                      .|..|+-|||+||+||..|.+.|+.|++.+||+|||.++.|.|+..+||.+|++|..|....-.. +++-.|++-.. .-
T Consensus      2741 RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsS-d~DadFS~md~aa~ 2819 (3015)
T KOG0943|consen 2741 RLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSS-DADADFSAMDLAAA 2819 (3015)
T ss_pred             HHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcc-cccchhhHHHHhhc
Confidence            46789999999999999999999999999999999999999999999999999999886533211 23334443211 11


Q ss_pred             c------eeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--
Q psy16327        879 G------QVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE--  914 (994)
Q Consensus       879 g------~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG--  914 (994)
                      |      ...+|+|||||.+|+||.+|+-|||+.|+                +|+                    |||  
T Consensus      2820 gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~e 2899 (3015)
T KOG0943|consen 2820 GDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCE 2899 (3015)
T ss_pred             cchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeeccc
Confidence            1      23679999999999999999999999988                233                    787  


Q ss_pred             ---------eeeecC-----------------ee------------------eeccCCCCCCCCCCCCCCCCcceeeeec
Q psy16327        915 ---------RAIVRR-----------------EP------------------VCFSSLPGHAVFPWEDLPNSWRFCIEKV  950 (994)
Q Consensus       915 ---------~t~y~~-----------------qi------------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~  950 (994)
                               +|-+.+                 ||                  +..+|..|-.. +     ....+.| +-
T Consensus      2900 eVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~-p-----~~aSimi-RP 2972 (3015)
T KOG0943|consen 2900 EVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGF-P-----PMASIMI-RP 2972 (3015)
T ss_pred             ceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCC-C-----CCCceee-cC
Confidence                     222221                 11                  56677654221 1     2233444 33


Q ss_pred             CCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327        951 GKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ  993 (994)
Q Consensus       951 ~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~  993 (994)
                      .+|..||+|+||..+|..|.|+|+.+||+||+.||.- ..||+
T Consensus      2973 ~dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKa-KNFGF 3014 (3015)
T KOG0943|consen 2973 PDDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKA-KNFGF 3014 (3015)
T ss_pred             cccccCCcccchhhheeeechhhHHHHHHHHHHhhhc-ccccc
Confidence            5677999999999999999999999999999999985 45554

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5e-24  Score=258.78  Aligned_cols=126  Identities=30%  Similarity=0.570  Sum_probs=115.6

Q ss_pred             ccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcc
Q psy16327          2 EMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIE   81 (994)
Q Consensus         2 e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~   81 (994)
                      -+.++++|..++||||     |||+||.||++|++            +||++|++|+|+++|++|+.||..||++|||.+
T Consensus       673 sve~~~fg~~~tVeLi-----pnG~ni~VT~~Nk~------------eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~  735 (872)
T COG5021         673 TVEDDSFGESRTVELI-----PNGRNISVTNENKK------------EYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPD  735 (872)
T ss_pred             EEeecccCceeEEEec-----cCCccccccchHHH------------HHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHH
Confidence            3457889999999996     88999999999999            999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHcCCCc-cChhhhhhcceeCCccCCCcceeeEEEE--ecCcccccc---ccccccC
Q psy16327         82 WLKYFDERELELILCGMQE-IDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEE---FTVGGQG  144 (994)
Q Consensus        82 ~L~~f~~~EL~~ll~G~~~-id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~---F~~~~~~  144 (994)
                      +|.||++.|||+||||.++ ||++|||.||.|.||+++|++|+|||++  -|+.|+|+.   |.++-.|
T Consensus       736 ~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsr  804 (872)
T COG5021         736 LLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSR  804 (872)
T ss_pred             HHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCC
Confidence            9999999999999999998 9999999999999999999999999995  466777776   4554444

>KOG0942|consensus

Probab=99.85  E-value=1.8e-22  Score=236.37  Aligned_cols=137  Identities=25%  Similarity=0.461  Sum_probs=121.6

Q ss_pred             CccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCc
Q psy16327          1 MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPI   80 (994)
Q Consensus         1 ~e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~   80 (994)
                      |++.+..+|..++|||     ||||++|+||++|+.            +||+||++|+|+..|++|+.||++||..|||+
T Consensus       805 FtVv~~e~G~~~vVeL-----kPnGs~i~VTneNvi------------~YihLVsnY~LN~rir~~c~AFr~Gls~II~~  867 (1001)
T KOG0942|consen  805 FTVVNSELGERQVVEL-----KPNGSKIRVTNENVI------------EYIHLVSNYKLNQRIRRQCSAFRKGLSQIISP  867 (1001)
T ss_pred             EEEeccccccceeEEe-----ccCCccceeechhhh------------hhhHHhhhhHHHHHHHHHHHHHhcchhhcCCH
Confidence            4677888999999999     588999999999999            99999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHcCCCc-cChhhhhhcceeC-CccCCCcceeeEEEEecCccccccccccccC--------------
Q psy16327         81 EWLKYFDERELELILCGMQE-IDVEDWQRNAIYR-HYTRNSKQTTRVVKNTYQPKWNEEFTVGGQG--------------  144 (994)
Q Consensus        81 ~~L~~f~~~EL~~ll~G~~~-id~~~l~~~t~y~-gy~~~s~~i~~fw~~f~~~~e~~~F~~~~~~--------------  144 (994)
                      +||+||++.|||.||+|.++ ||++|||+||.|. ||+++||+|..||++      ..+|+.+++|              
T Consensus       868 eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeV------l~~F~~edKr~fLKFVTscsRpPl  941 (1001)
T KOG0942|consen  868 EWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEV------LEEFSDEDKRKFLKFVTSCSRPPL  941 (1001)
T ss_pred             HHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHH------HHhcchHHHHHHHHHHhcCCCccc
Confidence            99999999999999999875 9999999999996 699999999999998      6677666666              


Q ss_pred             cCCCCCCCeEEEeecc
Q psy16327        145 GGLLKPNPYIELYVDY  160 (994)
Q Consensus       145 ~~f~~~dPyv~v~~~g  160 (994)
                      -||...||---|...|
T Consensus       942 lGFK~L~P~FcI~n~g  957 (1001)
T KOG0942|consen  942 LGFKALDPAFCIRNAG  957 (1001)
T ss_pred             ccchhcCccceeeeCC
Confidence            2455556655555544

>KOG0939|consensus

Probab=99.83  E-value=7.6e-22  Score=226.53  Aligned_cols=117  Identities=31%  Similarity=0.564  Sum_probs=109.8

Q ss_pred             cccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc
Q psy16327          5 DDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK   84 (994)
Q Consensus         5 ~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~   84 (994)
                      .+.+|...+|||+     |||++|.||.+|+.            +||+|++++||..+|++|++||+.||++|||..+|.
T Consensus       524 ~~~~g~~~~~eL~-----p~G~~i~Vt~~nK~------------~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~  586 (720)
T KOG0939|consen  524 DDEFGVESVVELK-----PGGAKIYVTEANKQ------------EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLS  586 (720)
T ss_pred             eccccccceeecc-----cCCCceeeccccHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Confidence            4667888999995     88999999999999            999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEE--ecCccccccc
Q psy16327         85 YFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEEF  138 (994)
Q Consensus        85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~F  138 (994)
                      +|++.|||+||||.++|||+|||.||+|.||...+++|+|||++  .|+.+||+.|
T Consensus       587 if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~eerakl  642 (720)
T KOG0939|consen  587 IFDEQELELLISGLPEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQEERAKL  642 (720)
T ss_pred             HhhhHHHHHHHcCCCcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcHHHHHhh
Confidence            99999999999999999999999999999999999999999994  5667777773

>KOG0941|consensus

Probab=99.83  E-value=1.3e-21  Score=229.02  Aligned_cols=175  Identities=19%  Similarity=0.251  Sum_probs=135.1

Q ss_pred             ccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcc
Q psy16327          2 EMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIE   81 (994)
Q Consensus         2 e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~   81 (994)
                      ++..+.+|..+++||+     |||.+|+||++|++            |||.+|++|.++.+|++|++||++||+.||..+
T Consensus       658 ~i~~~~~g~~~~~~L~-----~nG~~i~vt~~Nr~------------efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~  720 (850)
T KOG0941|consen  658 QISQDDNGIPRTYELK-----PNGDEIPVTNENRR------------EFVNLYVDYILNKSVKKQFEAFRRGFYKVCDEN  720 (850)
T ss_pred             EEEehhcCccceeecc-----CCCcccccccccHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchh
Confidence            3445667788899995     88999999999999            999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHcCCCccChhhhhhcceeCC-ccCCCcceeeEEEEecCccccccccccccCcCCCCCCCeEEEeecc
Q psy16327         82 WLKYFDERELELILCGMQEIDVEDWQRNAIYRH-YTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDY  160 (994)
Q Consensus        82 ~L~~f~~~EL~~ll~G~~~id~~~l~~~t~y~g-y~~~s~~i~~fw~~f~~~~e~~~F~~~~~~~~f~~~dPyv~v~~~g  160 (994)
                      .|++|.|+||+.||||+.++||+.|+.+|+|+| |+.+||+|+|||++|      ..|+.+++|+.+.+..---.+.+.|
T Consensus       721 ~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~------~~~~~~~kkkfL~F~TGsdRipv~G  794 (850)
T KOG0941|consen  721 LLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIF------HAFTLEEKKKFLQFLTGSDRIPVGG  794 (850)
T ss_pred             hhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCChHHHHHHHHH------HhCCHHHhhhheEeecCCCccccCC
Confidence            999999999999999999999999999999995 999999999999994      3445555544333333333556666


Q ss_pred             CCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCccc
Q psy16327        161 KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTI  207 (994)
Q Consensus       161 ~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~l  207 (994)
                      -..-|-.+.+   +..|.+.     .|.+.-+|.+.+--+++.++.|
T Consensus       795 ~~~l~~~i~~---~~~~~~~-----lP~shTCfN~L~Lp~YsskekL  833 (850)
T KOG0941|consen  795 LAKLKLVIQK---NGPDEDR-----LPVSHTCFNVLLLPEYSSKEKL  833 (850)
T ss_pred             hhhceEEEec---CCCCccc-----CcchhhhhhhhhccccCcHHHH
Confidence            4333322222   3444332     2455666777776667665433

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with

Probab=99.81  E-value=3.6e-21  Score=217.47  Aligned_cols=114  Identities=34%  Similarity=0.611  Sum_probs=104.3

Q ss_pred             cCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCC
Q psy16327          7 HYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYF   86 (994)
Q Consensus         7 ~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f   86 (994)
                      .++...+||||     |||+++.||.+|++            +||+++++|+|.++++.|++||++||++|+|..+|++|
T Consensus       147 ~~g~~~~~eL~-----~~G~~~~Vt~~N~~------------eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f  209 (336)
T smart00119      147 EFGQVKVVELK-----PGGSNIPVTEENKK------------EYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLF  209 (336)
T ss_pred             cCCCcceEecC-----CCCCCCcCCHHHHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCC
Confidence            35667788985     88999999999999            99999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc
Q psy16327         87 DERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE  137 (994)
Q Consensus        87 ~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~  137 (994)
                      +|+||+.|+||.++||+++|+++|+|+ ||++++++|+|||++.  |++++|+.
T Consensus       210 ~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~  263 (336)
T smart00119      210 TPEELELLICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRK  263 (336)
T ss_pred             CHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHH
Confidence            999999999999999999999999999 8999999999999972  34444444

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.

>KOG4427|consensus

Probab=99.81  E-value=8.2e-21  Score=216.78  Aligned_cols=121  Identities=28%  Similarity=0.484  Sum_probs=111.5

Q ss_pred             CccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCc
Q psy16327          1 MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPI   80 (994)
Q Consensus         1 ~e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~   80 (994)
                      |.+..|.+|.-.+|||+     |||+.|.||++|+-            .||++|+.|+|++.|.+|..||.+||.+||.+
T Consensus       875 fSvdedfmGkis~~eL~-----PgGkt~sVtneNKi------------~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P  937 (1096)
T KOG4427|consen  875 FSVDEDFMGKISTIELK-----PGGKTISVTNENKI------------QYIHAMAHFRMNRQIVEQTNAFYRGFRSIISP  937 (1096)
T ss_pred             eEechhhccceeEEEec-----cCCcceeccccchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            34667889999999995     88999999999999            99999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHcCCC-ccChhhhhhcceeC-CccCCCcceeeEEEE---ecCccccccc
Q psy16327         81 EWLKYFDERELELILCGMQ-EIDVEDWQRNAIYR-HYTRNSKQTTRVVKN---TYQPKWNEEF  138 (994)
Q Consensus        81 ~~L~~f~~~EL~~ll~G~~-~id~~~l~~~t~y~-gy~~~s~~i~~fw~~---f~~~~e~~~F  138 (994)
                      +||++|+|.||++||+|.. +||++|||+||+|- ||..+|++|+|||++   .|++|||..|
T Consensus       938 ~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklf 1000 (1096)
T KOG4427|consen  938 EWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLF 1000 (1096)
T ss_pred             HHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHH
Confidence            9999999999999999964 89999999999998 699999999999996   3667777765

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

Probab=99.79  E-value=3.2e-20  Score=211.86  Aligned_cols=113  Identities=34%  Similarity=0.597  Sum_probs=103.7

Q ss_pred             CCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCC
Q psy16327          8 YQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFD   87 (994)
Q Consensus         8 ~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~   87 (994)
                      .+...+|||+     |||+++.||.+|++            +||+++++|+|+++++.|++||++||++|+|..+|++|+
T Consensus       166 ~~~~~~veL~-----~~G~~~~VT~~N~~------------eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~  228 (352)
T cd00078         166 FGGAVTVELK-----PGGRDIPVTNENKE------------EYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFT  228 (352)
T ss_pred             CCCcceEecC-----CCCCCCcCCHHHHH------------HHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCC
Confidence            5667888995     88999999999999            999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccChhhhhhcceeCC-ccCCCcceeeEEEE--ecCcccccc
Q psy16327         88 ERELELILCGMQEIDVEDWQRNAIYRH-YTRNSKQTTRVVKN--TYQPKWNEE  137 (994)
Q Consensus        88 ~~EL~~ll~G~~~id~~~l~~~t~y~g-y~~~s~~i~~fw~~--f~~~~e~~~  137 (994)
                      |+||+.|+||.++||+++|+++|+|+| |+.++++|+|||++  .|+++||+.
T Consensus       229 ~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~  281 (352)
T cd00078         229 PEELELLICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKK  281 (352)
T ss_pred             HHHHHHHhCCCCCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999999999999995 77799999999997  344555555

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.

>KOG0170|consensus

Probab=99.70  E-value=7.8e-18  Score=186.87  Aligned_cols=122  Identities=24%  Similarity=0.377  Sum_probs=105.9

Q ss_pred             EEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHHHHH
Q psy16327         13 IIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELE   92 (994)
Q Consensus        13 ~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~EL~   92 (994)
                      .|||+     |||.|++||..|++            |||+.+++|.+.++|++|++||+.||++|+|.+.|++|+|+||.
T Consensus       431 ~ieL~-----p~g~~~~V~~~Nle------------EYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~  493 (621)
T KOG0170|consen  431 DIELI-----PGGANKPVTISNLE------------EYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELV  493 (621)
T ss_pred             Ceeec-----cCCCCCccccccHH------------HHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHH
Confidence            47885     88999999999999            99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCC-ccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC---cCCCCCC
Q psy16327         93 LILCGMQ-EIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG---GGLLKPN  151 (994)
Q Consensus        93 ~ll~G~~-~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~---~~f~~~d  151 (994)
                      .|+||.. +|+++.|..|.+++ ||+.+||.|+.+..+.  |+.+|+..   |.++.||   |+|...+
T Consensus       494 ~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLN  562 (621)
T KOG0170|consen  494 TLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLN  562 (621)
T ss_pred             HHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccC
Confidence            9999976 59999999999999 8999999999988763  33444443   5666666   6665443

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []

Probab=99.69  E-value=6.2e-18  Score=190.70  Aligned_cols=118  Identities=33%  Similarity=0.547  Sum_probs=101.8

Q ss_pred             ceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHH
Q psy16327         10 LAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDER   89 (994)
Q Consensus        10 ~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~   89 (994)
                      ...++||+     +||+++.||.+|++            +||++++++++.++++.|++||++||.+|+|...|++|+++
T Consensus       128 ~~~~~eL~-----~~G~~~~Vt~~N~~------------eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~  190 (317)
T PF00632_consen  128 QVEEVELI-----PGGSNIPVTNENKE------------EYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPE  190 (317)
T ss_dssp             EEEEEESS-----TTGGGSB-TTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHH
T ss_pred             ceeEeeec-----CCCcccccchhhhh------------HHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHH
Confidence            34567885     88999999999999            99999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCc-cChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         90 ELELILCGMQE-IDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        90 EL~~ll~G~~~-id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      ||+.++||..+ ||+++|+++++|+ ||++++++|+|||++.  |++++|+.   |.++..+
T Consensus       191 eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~  252 (317)
T PF00632_consen  191 ELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSR  252 (317)
T ss_dssp             HHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS
T ss_pred             HHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCC
Confidence            99999999999 9999999999999 8999999999999974  56666666   4555444

Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....

>KOG1030|consensus

Probab=99.64  E-value=3.9e-16  Score=153.63  Aligned_cols=75  Identities=28%  Similarity=0.440  Sum_probs=69.1

Q ss_pred             CC-CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        146 GL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       146 ~f-~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      .| .++||||+|.+ |.|+.||+|+++++||+|||.|+|.|++ ...|.++|||+|+|++|||||+|.|+|..++...
T Consensus        22 D~~~sSDPyVVl~l-g~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   22 DFLGSSDPYVVLEL-GNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             ccccCCCCeEEEEE-CCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence            35 78999999999 5669999999999999999999998875 6799999999999999999999999999998864

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.61  E-value=3e-15  Score=145.51  Aligned_cols=103  Identities=41%  Similarity=0.721  Sum_probs=93.6

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      +.++||||+|.++|+..+||+++++++||.|||.|.|.+.+...|.|+|||++.+++|++||.+.++|++++...++..+
T Consensus        19 ~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~   98 (125)
T cd04021          19 SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLE   98 (125)
T ss_pred             CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCcc
Confidence            67899999999987768999999999999999999999998899999999999999999999999999999999888888


Q ss_pred             eEEEEeecCCCCC---CCCCeEEEec
Q psy16327        227 HLEITLDLMNDSR---VSPPLMSVEM  249 (994)
Q Consensus       227 ~~~~~l~L~~~~~---~~~G~l~v~~  249 (994)
                      +...+++|++.++   ...|+|.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          99 NVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             ceEEEEEEEccCCCcceeeeeEEEEe
Confidence            8778888886664   6789988865

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.57  E-value=1.4e-14  Score=140.03  Aligned_cols=99  Identities=16%  Similarity=0.248  Sum_probs=83.3

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      ..+||||+|.++++..+||++++||+||.|||+|.|.|.+ ...|.|.|||++++++|++||.+.|+|+++...   ...
T Consensus        20 g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---~~~   96 (121)
T cd08401          20 KMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKY---YGK   96 (121)
T ss_pred             CCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCC---CCc
Confidence            3679999999977767899999999999999999999976 479999999999999999999999999998653   234


Q ss_pred             eEEEEeecCCCCCCCCCeEEEec
Q psy16327        227 HLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       227 ~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      ..|+.|......+...|+|.|.+
T Consensus        97 ~~w~~L~~~~~~~~~~G~i~l~~  119 (121)
T cd08401          97 DTWFPLQPVDADSEVQGKVHLEL  119 (121)
T ss_pred             EeeEEEEccCCCCcccEEEEEEE
Confidence            56777766545556789988865

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.56  E-value=1.7e-14  Score=139.38  Aligned_cols=100  Identities=15%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      +.++||||++.++|...+||+++++++||+|||.|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++...     
T Consensus        18 ~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~-----   92 (121)
T cd04042          18 GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN-----   92 (121)
T ss_pred             CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCC-----
Confidence            46799999999988678999999999999999999998764 679999999999999999999999999998753     


Q ss_pred             ceEEEEeecCCCCC-CCCCeEEEecCC
Q psy16327        226 EHLEITLDLMNDSR-VSPPLMSVEMPP  251 (994)
Q Consensus       226 ~~~~~~l~L~~~~~-~~~G~l~v~~~~  251 (994)
                      ...+.+++|.+.++ ...|+|.|.++.
T Consensus        93 ~~~~~~~~L~~~~~~~~~G~l~l~~~~  119 (121)
T cd04042          93 KPTEVKLKLEDPNSDEDLGYISLVVTL  119 (121)
T ss_pred             CCeEEEEECCCCCCccCceEEEEEEEE
Confidence            22446778876554 678999988754

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.56  E-value=1.5e-14  Score=139.38  Aligned_cols=100  Identities=18%  Similarity=0.271  Sum_probs=78.9

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +.++||||+|.+++ ++.||+++++ ++||+|||+|.|.+.+ ...|.|+|||+|.+++|++||++.|+|.+.+..  |.
T Consensus        19 ~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~--g~   95 (121)
T cd04016          19 LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFN--GE   95 (121)
T ss_pred             CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccC--CC
Confidence            67899999999955 5789999876 8999999999998865 468999999999999999999999999753332  23


Q ss_pred             cceEEEEeecCCCC-CCCCCeEEEecCC
Q psy16327        225 CEHLEITLDLMNDS-RVSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~L~~~~-~~~~G~l~v~~~~  251 (994)
                      ....|+  +|...+ +...|+|+|.|++
T Consensus        96 ~~~~W~--~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          96 TLDDWY--SLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             CccccE--eCcCccCCCCceEEEEEEeC
Confidence            234445  454433 3567999998864

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.55  E-value=2.1e-14  Score=139.68  Aligned_cols=101  Identities=13%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-------CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-------~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ...+||||+|.+++ +++||+++++++||+|||.|.|.+..       ...|.|.|||++++++|++||.+.|+|+++..
T Consensus        17 ~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~   95 (126)
T cd08682          17 SGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDE   95 (126)
T ss_pred             CcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhc
Confidence            45789999999954 58899999999999999999998755       46899999999999999999999999999974


Q ss_pred             ccCCccceEEEEeecCCC-CCCCCCeEEEec
Q psy16327        220 HYNGKCEHLEITLDLMND-SRVSPPLMSVEM  249 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~-~~~~~G~l~v~~  249 (994)
                      .. +.....|+.|.-+.. .....|+|.|.+
T Consensus        96 ~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          96 DK-GRRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             cC-CCcccEEEECcCCCCCCccccceEEEEe
Confidence            32 233345555543322 234689999875

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.51  E-value=9.4e-14  Score=134.64  Aligned_cols=101  Identities=29%  Similarity=0.450  Sum_probs=82.5

Q ss_pred             cCCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCC--CcccceEEeehhhhhcccC
Q psy16327        145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR--DCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       145 ~~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~--d~~lG~~~i~l~~~~~~~~  222 (994)
                      ..+.++||||+|.++|.+.+||+++++++||.|||.|.|.+.+.+.|.|+|||++.+++  |++||.+.|+|.+++...+
T Consensus        16 ~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~   95 (123)
T cd08382          16 DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKD   95 (123)
T ss_pred             CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCC
Confidence            34678999999999877899999999999999999999999888999999999999875  5899999999999987654


Q ss_pred             CccceEEEEeecCCC----CCCCCCeEEEec
Q psy16327        223 GKCEHLEITLDLMND----SRVSPPLMSVEM  249 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~----~~~~~G~l~v~~  249 (994)
                      +..  .  +++|++.    ++...|+|.+.+
T Consensus        96 ~~~--~--~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          96 TGY--Q--RLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             Ccc--c--eeEeecCCCCCCceEeeEEEEEe
Confidence            422  2  3344332    234578888875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.51  E-value=7.8e-14  Score=137.28  Aligned_cols=105  Identities=19%  Similarity=0.338  Sum_probs=83.1

Q ss_pred             cCCCCCCCeEEEeecc------------CCceeeeeecCCCCCCc-ceEEEEEecCCCeEEEEEecCCCCCC---Ccccc
Q psy16327        145 GGLLKPNPYIELYVDY------------KNPKTTRVVKNTYQPKW-NEEFTVLVSPYSIILFRLLDHRTFRR---DCTIG  208 (994)
Q Consensus       145 ~~f~~~dPyv~v~~~g------------~~~~kT~v~k~tlnP~W-ne~f~~~v~~~~~l~~~V~D~d~~~~---d~~lG  208 (994)
                      ..|.++||||+|.+.+            .+.+||+++++++||+| ||.|.|.+.++..|.|.|||++..++   |++||
T Consensus        16 ~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~~~~~~~~~d~lG   95 (137)
T cd08691          16 GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKFAKSRPIIRRFLG   95 (137)
T ss_pred             ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecCCCCCccCCceEE
Confidence            3467899999999954            23689999999999999 99999999888899999999875443   78999


Q ss_pred             eEEeehhhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327        209 EKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       209 ~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      .+.|+|++++...++.....++.|.-......+.|+|.+.+
T Consensus        96 ~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          96 KLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99999999998876665444444432233346789888764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.50  E-value=9.8e-14  Score=136.83  Aligned_cols=100  Identities=22%  Similarity=0.379  Sum_probs=82.1

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +..+||||+|.++ .+.+||+++++++||.|||.|.|.+.+  ...|.|+|||+|.+++|++||.+.|+|.+++......
T Consensus        33 ~g~~DPYv~v~~~-~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~  111 (136)
T cd08375          33 NGKSDPYCEVSMG-SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKES  111 (136)
T ss_pred             CCCcCcEEEEEEC-CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccC
Confidence            5679999999995 458999999999999999999998865  4689999999999999999999999999998744333


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      ...++..+.|.   ....|+|.|.++
T Consensus       112 ~~~~~~~~~~~---~~~~g~i~l~~~  134 (136)
T cd08375         112 KGPITKRLLLH---EVPTGEVVVKLD  134 (136)
T ss_pred             CCcEEEEeccc---cccceeEEEEEE
Confidence            34444555552   456799888774

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.49  E-value=1.5e-13  Score=133.78  Aligned_cols=103  Identities=21%  Similarity=0.236  Sum_probs=83.0

Q ss_pred             CCCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +..+||||++.+++ .+++||+++++|+||.|||.|.|.+.+ ...|.|+|||++.+++|++||.+.|+|.++.....+ 
T Consensus        15 ~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~-   93 (126)
T cd08678          15 AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG-   93 (126)
T ss_pred             CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCce-
Confidence            56899999999975 346899999999999999999998875 568999999999999999999999999999865432 


Q ss_pred             cceEEEEeecCCC-CCCCCCeEEEecCCc
Q psy16327        225 CEHLEITLDLMND-SRVSPPLMSVEMPPL  252 (994)
Q Consensus       225 ~~~~~~~l~L~~~-~~~~~G~l~v~~~~~  252 (994)
                        ..++.|..... +....|+|.|.+...
T Consensus        94 --~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          94 --RQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             --eEEEEecCCCCCCCCcceEEEEEEEEe
Confidence              23444443322 345789999988653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.49  E-value=1.3e-13  Score=133.22  Aligned_cols=102  Identities=26%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      +.++||||+|.++|+..+||+++++++||.|||.|.|.+... ..|.|.|||++.+++|++||.+.+++.++...  +..
T Consensus        18 ~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~--~~~   95 (121)
T cd04054          18 TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAH--PRG   95 (121)
T ss_pred             CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccC--CCC
Confidence            457899999999877668999999999999999999988754 79999999999999999999999999888532  222


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      ...|+.|...+..+...|+|.|.++
T Consensus        96 ~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          96 IDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCcEEECeeeCCCCccccEEEEEEE
Confidence            3456665545555567899988763

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>KOG3209|consensus

Probab=99.49  E-value=9.3e-14  Score=159.18  Aligned_cols=171  Identities=29%  Similarity=0.538  Sum_probs=122.0

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCCCCCCceeeeCCCCCeEEEeCCCCc---ccccCCchhhhhhcccc
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRS---TTWQRPNSERLQHFKHW  446 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~---t~w~~P~~~~~~~~~~~  446 (994)
                      ....||++|++.+...++.|+..++++.++|+.++++++||+..   +|..||+.+..+.   +.|- |.          
T Consensus       129 ~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~---~~~~~~~E~~e~s~~~s~~m-~s----------  194 (984)
T KOG3209|consen  129 QELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENG---SGQNYSVEMEESSYPTSSDM-PS----------  194 (984)
T ss_pred             ccccCCCcchhcccccCcceeehhccCCCCcccccccCcccccc---CCcccchhhhhccCCccCCC-cc----------
Confidence            34689999999999999999999999999999999999999764   5667766554332   1111 00          


Q ss_pred             ccccccccccCCccccCCCCCcCCCCCCccccCCCcccccccccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeE
Q psy16327        447 QGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVY  526 (994)
Q Consensus       447 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~y  526 (994)
                                   .++-|     +.+.+.         +..+         .....+.-+..+|||..||+.++..|.+|
T Consensus       195 -------------sy~aP-----sts~s~---------~~~~---------~~~~~~~e~~~gplp~nwemayte~gevy  238 (984)
T KOG3209|consen  195 -------------SYFAP-----STSQST---------TPMD---------RYSPATQEDNLGPLPHNWEMAYTEQGEVY  238 (984)
T ss_pred             -------------ccccc-----ccCCCC---------Cccc---------ccCccccccccCCCCccceEeEeecCeeE
Confidence                         00000     000000         0000         00111222445689999999999999999


Q ss_pred             EEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcccccccCCCCCCCceEEEc
Q psy16327        527 YVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQ  606 (994)
Q Consensus       527 y~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~gWe~~~~  606 (994)
                      |+||+|++|+|.+||....+                                        -+.+.+..+.||.||++..+
T Consensus       239 fiDhntkttswLdprl~kka----------------------------------------K~~eeckd~elPygWeki~d  278 (984)
T KOG3209|consen  239 FIDHNTKTTSWLDPRLTKKA----------------------------------------KPPEECKDQELPYGWEKIED  278 (984)
T ss_pred             eeecccccceecChhhhccc----------------------------------------CChhhcccccccccccccCC
Confidence            99999999999999964211                                        11233445679999999999


Q ss_pred             CCCceEEEecCCcccccCCCCccc
Q psy16327        607 PDGRVYFVNHKNRTTQWEDPRTQG  630 (994)
Q Consensus       607 ~~g~vyfvnh~t~~t~w~dPr~~~  630 (994)
                      +-...|||+|.|+.++++.|-...
T Consensus       279 piYg~yyvdHiN~~sq~enpvlea  302 (984)
T KOG3209|consen  279 PIYGTYYVDHINRKSQYENPVLEA  302 (984)
T ss_pred             ccceeEEecccchhhhhccchhhc
Confidence            999999999999999999997644

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.49  E-value=1e-13  Score=135.05  Aligned_cols=101  Identities=18%  Similarity=0.203  Sum_probs=81.3

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCC-CCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFR-RDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~-~d~~lG~~~i~l~~~~~~  220 (994)
                      ...+||||+|.++++ ++||+++++++||+|||.|.|.+..     ...|.|.|||++++. +|++||.+.|+|+++...
T Consensus        18 ~g~~dpyv~v~~~~~-~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~   96 (127)
T cd04022          18 QGSSSAYVELDFDGQ-KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPP   96 (127)
T ss_pred             CCCcCcEEEEEECCE-EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC
Confidence            457899999999664 8899999999999999999998864     247999999999987 899999999999999732


Q ss_pred             cCCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        221 YNGKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       221 ~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                        +.....|+.|.-....+...|+|.|.+.
T Consensus        97 --~~~~~~w~~L~~~~~~~~~~G~l~l~~~  124 (127)
T cd04022          97 --SEAVVQRYPLEKRGLFSRVRGEIGLKVY  124 (127)
T ss_pred             --CCccceEeEeeeCCCCCCccEEEEEEEE
Confidence              2334556666544334467899988774

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.48  E-value=1.6e-13  Score=133.63  Aligned_cols=103  Identities=22%  Similarity=0.244  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +..+||||+|.+++ +++||+++++++||.|||.|.|.+..  ...|.|.|||++.+++|++||.+.|+|.++.......
T Consensus        21 ~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~   99 (128)
T cd04024          21 KGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTG   99 (128)
T ss_pred             CCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccC
Confidence            56789999999954 58999999999999999999998874  6799999999999999999999999999998532333


Q ss_pred             cceEEEEeecCCCC--CCCCCeEEEecC
Q psy16327        225 CEHLEITLDLMNDS--RVSPPLMSVEMP  250 (994)
Q Consensus       225 ~~~~~~~l~L~~~~--~~~~G~l~v~~~  250 (994)
                      ....|+.|.-+...  ..+.|+|.|.++
T Consensus       100 ~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024         100 QSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             ccceeEEccCcccCccccccceEEEEEE
Confidence            34555655544222  357899998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.47  E-value=1.7e-13  Score=132.36  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=78.3

Q ss_pred             CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC--Cc
Q psy16327        149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN--GK  224 (994)
Q Consensus       149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~--~~  224 (994)
                      ++||||+|.+++ +++||+++++|+||+|||+|.|.+..  ...|.|.|||+|++ +|++||.+.|+|+++.....  +.
T Consensus        16 ~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~   93 (121)
T cd08378          16 SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSP   93 (121)
T ss_pred             cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCC
Confidence            689999999965 58999999999999999999998764  56899999999988 78899999999999865422  22


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEec
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      ....|+.|.-.+. ....|+|.|.+
T Consensus        94 ~~~~W~~L~~~~~-~~~~G~i~l~~  117 (121)
T cd08378          94 LAPQWYRLEDKKG-GRVGGELMLAV  117 (121)
T ss_pred             CCcceEEccCCCC-CccceEEEEEE
Confidence            3455665543332 46789988765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.47  E-value=2e-13  Score=132.43  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=74.2

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC------CCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF------RRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~------~~d~~lG~~~i~l~~~~~  219 (994)
                      ...+||||+|++++ ++.||+++++++||+|||+|.|.+. +.+.|.|+|||++.+      ++|++||++.|+|+++..
T Consensus        21 ~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~   99 (126)
T cd08379          21 RGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLED   99 (126)
T ss_pred             CCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccC
Confidence            56899999999954 4889999999999999999999875 467899999999987      489999999999999865


Q ss_pred             ccCCccceEEEEeecCCCC---CCCCCeEEE
Q psy16327        220 HYNGKCEHLEITLDLMNDS---RVSPPLMSV  247 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~---~~~~G~l~v  247 (994)
                      .   ....  .+++|...+   ....|+|..
T Consensus       100 ~---~~~~--~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379         100 D---RVYA--HSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             C---CEEe--eEEEeEeCCCCCccCCcEEEe
Confidence            3   2223  444555322   235667653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.47  E-value=1.6e-13  Score=137.20  Aligned_cols=97  Identities=18%  Similarity=0.362  Sum_probs=81.1

Q ss_pred             CCCCeEEEee----ccCCceeeeeecCCCCCCcceEEEEEecCC----------CeEEEEEecCCCC-CCCcccceEEee
Q psy16327        149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY----------SIILFRLLDHRTF-RRDCTIGEKRLN  213 (994)
Q Consensus       149 ~~dPyv~v~~----~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~----------~~l~~~V~D~d~~-~~d~~lG~~~i~  213 (994)
                      .+||||++.+    ++.+++||+|+++|+||+|||+|.|.|...          ..|.|.|||++.| ++|++||++.|+
T Consensus        24 ~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~  103 (155)
T cd08690          24 DLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVK  103 (155)
T ss_pred             CCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEE
Confidence            5899999987    566789999999999999999999988643          3699999999987 689999999999


Q ss_pred             hhhhhcccCCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        214 IYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       214 l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      |..+....     .+..+++|.+..+..+|+|.|.+.
T Consensus       104 L~~l~~~~-----~~~~~~~L~~~~k~~Gg~l~v~ir  135 (155)
T cd08690         104 LEPLETKC-----EIHESVDLMDGRKATGGKLEVKVR  135 (155)
T ss_pred             cccccccC-----cceEEEEhhhCCCCcCCEEEEEEE
Confidence            99985442     133577888888888998877764

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.46  E-value=3.5e-13  Score=131.31  Aligned_cols=101  Identities=22%  Similarity=0.293  Sum_probs=83.8

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||+|.+++. ++||+++++++||+|||+|.|.+.    ....|.|+|||++++++|++||.+.++|.++...  
T Consensus        12 ~g~~Dpyv~v~~~~~-~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~--   88 (127)
T cd08373          12 KGKGDRIAKVTFRGV-KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSE--   88 (127)
T ss_pred             CCCCCCEEEEEECCE-eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccC--
Confidence            567999999999765 789999999999999999999884    4579999999999999999999999999999753  


Q ss_pred             CccceEEEEeecCCCCC-CCCCeEEEecCCcC
Q psy16327        223 GKCEHLEITLDLMNDSR-VSPPLMSVEMPPLL  253 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~-~~~G~l~v~~~~~~  253 (994)
                         .....+++|.+.++ ...|+|.+.+++..
T Consensus        89 ---~~~~~~~~L~~~~~~~~~~~l~l~~~~~~  117 (127)
T cd08373          89 ---GLLEVTEPLLDSNGRPTGATISLEVSYQP  117 (127)
T ss_pred             ---CceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence               22345677775544 34689999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.45  E-value=3e-13  Score=128.71  Aligned_cols=97  Identities=24%  Similarity=0.272  Sum_probs=79.0

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ..++||||+|.++++..+||+++++++||.|||.|.|.+.+  .+.|.|.|||++.+ +|++||.+.|+|+++++...  
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~--   86 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS--   86 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence            45689999999987667899999999999999999998875  46899999999999 89999999999999976422  


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      ...  .++.|.+   ...|+|.|.+..
T Consensus        87 ~~~--~w~~L~~---~~~G~i~~~~~~  108 (111)
T cd04052          87 VGQ--QWFPLSG---NGQGRIRISALW  108 (111)
T ss_pred             ccc--eeEECCC---CCCCEEEEEEEE
Confidence            223  3444543   357998887654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1891|consensus

Probab=99.45  E-value=6.5e-14  Score=140.87  Aligned_cols=70  Identities=39%  Similarity=0.921  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCceEeecCCCCeeeeeCCCCcccccCC---CCCCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327        368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       368 ~~~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P---~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      -+.+.||||||....+-.||.|||||++++|+|.||   ++||+||++.++++-.+||+|+.+|++++++|+.
T Consensus        88 ~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~  160 (271)
T KOG1891|consen   88 CSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI  160 (271)
T ss_pred             CcccCCCCCCcceeeEecCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence            346779999999999999999999999999999999   7899999999999999999999999999999983

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.45  E-value=2.4e-13  Score=130.62  Aligned_cols=84  Identities=19%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CCCCCeEEEeecc----C--CceeeeeecCCCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        148 LKPNPYIELYVDY----K--NPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~--~~~kT~v~k~tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      .++||||+|.+.|    .  +++||+++++|+||+|||+|.|.+...     ..|.|.|||+|.+++|++||.+.|+|++
T Consensus        18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~   97 (120)
T cd08395          18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD   97 (120)
T ss_pred             CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence            5789999999843    2  346899999999999999999988632     3699999999988889999999999999


Q ss_pred             hhcccCCccceEEEEeecCC
Q psy16327        217 VLAHYNGKCEHLEITLDLMN  236 (994)
Q Consensus       217 ~~~~~~~~~~~~~~~l~L~~  236 (994)
                      +....     ....+++|.+
T Consensus        98 ~~~~~-----~~~~w~~L~~  112 (120)
T cd08395          98 IAQAG-----SCACWLPLGR  112 (120)
T ss_pred             CcCCC-----cEEEEEECcC
Confidence            97542     2335556653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.43  E-value=5.4e-13  Score=130.91  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccce
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEH  227 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~  227 (994)
                      ..+||||+|.+++++.+||+++++|+||.|||+|+|.+.+...|.|.|||++.+++|++||.+.|+|.++.... +....
T Consensus        33 g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~~~  111 (132)
T cd04014          33 QLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-SGSFD  111 (132)
T ss_pred             cCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-CCccc
Confidence            46899999999887678999999999999999999999888999999999999999999999999999998741 22234


Q ss_pred             EEEEeecCCCCCCCCCeEEEecCC
Q psy16327        228 LEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       228 ~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      .|+.  |+     ..|+|.|.+..
T Consensus       112 ~w~~--L~-----~~G~l~l~~~~  128 (132)
T cd04014         112 LWVD--LE-----PQGKLHVKIEL  128 (132)
T ss_pred             EEEE--cc-----CCcEEEEEEEE
Confidence            4554  43     45888887654

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.43  E-value=6.6e-13  Score=127.14  Aligned_cols=94  Identities=17%  Similarity=0.328  Sum_probs=77.6

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +..+||||++.+++ +++||+++++|+||.|||.|.|.+.+  ...|.|.|||++.+++|++||.+.++|+++...   .
T Consensus        18 ~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~---~   93 (116)
T cd08376          18 NGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPRE---Q   93 (116)
T ss_pred             CCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCC---C
Confidence            45789999999965 48999999999999999999998765  579999999999999999999999999998653   2


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                        ....+++|...    .|+|.+.+.
T Consensus        94 --~~~~w~~L~~~----~G~~~~~~~  113 (116)
T cd08376          94 --THSLELELEDG----EGSLLLLLT  113 (116)
T ss_pred             --ceEEEEEccCC----CcEEEEEEE
Confidence              23456666642    588877653

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.43  E-value=7.3e-13  Score=127.54  Aligned_cols=95  Identities=22%  Similarity=0.425  Sum_probs=76.3

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||+|.+.+  ..++||+++++++||+|||+|.|.+..  ...|.|+|||+|++ +|++||.+.++|+++...  
T Consensus        18 ~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g--   94 (119)
T cd04036          18 LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLG--   94 (119)
T ss_pred             CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCC--
Confidence            46799999999964  457899999999999999999998865  45799999999999 899999999999998543  


Q ss_pred             CccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        223 GKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                       ..  ...+++|...   ..|+|.|.+.
T Consensus        95 -~~--~~~~~~L~~~---~~g~l~~~~~  116 (119)
T cd04036          95 -EK--VRVTFSLNPQ---GKEELEVEFL  116 (119)
T ss_pred             -Cc--EEEEEECCCC---CCceEEEEEE
Confidence             22  3355566532   4788777764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.43  E-value=7.6e-13  Score=129.92  Aligned_cols=104  Identities=22%  Similarity=0.400  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEeeccC------CceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~------~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+++.      ..+||+++++|+||.|||+|.|.+.+ ...|.|.|||++.+++|++||.+.|+|.++..
T Consensus        18 ~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~   97 (133)
T cd04033          18 FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPT   97 (133)
T ss_pred             CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCC
Confidence            457999999999764      25789999999999999999998876 56899999999999999999999999999986


Q ss_pred             ccCC---ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        220 HYNG---KCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       220 ~~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      ....   .....|+.|.-....+...|+|.|.+.
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~  131 (133)
T cd04033          98 ETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA  131 (133)
T ss_pred             cCccccccccchheeeeecCCCCcceeEEEEEEe
Confidence            5332   123445555432334457899999875

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.42  E-value=6.3e-13  Score=129.42  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC--CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~--~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      .+||||+|.+++.+.+||++ ++++||.|||.|.|.+.+.  ..|.|.|||++++++|++||.+.|+|.++...   ...
T Consensus        21 ~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~---~~~   96 (126)
T cd08400          21 VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNG---QET   96 (126)
T ss_pred             CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCC---Ccc
Confidence            57999999998776788987 5689999999999976553  57899999999999999999999999998652   333


Q ss_pred             eEEEEeecCCC-CCCCCCeEEEecCC
Q psy16327        227 HLEITLDLMND-SRVSPPLMSVEMPP  251 (994)
Q Consensus       227 ~~~~~l~L~~~-~~~~~G~l~v~~~~  251 (994)
                      ..|+.|.-... .....|+|.|.+++
T Consensus        97 ~~W~~L~~~~~~~~~~~G~i~l~l~~  122 (126)
T cd08400          97 DEWYPLSSASPLKGGEWGSLRIRARY  122 (126)
T ss_pred             cEeEEcccCCCCCCCcCcEEEEEEEE
Confidence            44555543332 23567999998865

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.41  E-value=5.9e-13  Score=126.60  Aligned_cols=84  Identities=26%  Similarity=0.265  Sum_probs=71.7

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ..+||||+|+++++ ++||+++++++||.|||+|.|.+..      ...|.|+|||++++++|++||++.|+|+++....
T Consensus        19 ~~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          19 GNIDPVVKVEVGGQ-KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             CCCCCEEEEEECCE-eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCC
Confidence            46899999999765 8899999999999999999997642      3589999999999999999999999999998776


Q ss_pred             CCccceEEEEe
Q psy16327        222 NGKCEHLEITL  232 (994)
Q Consensus       222 ~~~~~~~~~~l  232 (994)
                      .+.....|+.|
T Consensus        98 ~~~~~~~w~~L  108 (111)
T cd04011          98 DHAFLRKWLLL  108 (111)
T ss_pred             CCcceEEEEEe
Confidence            65555555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.41  E-value=7.5e-13  Score=128.53  Aligned_cols=101  Identities=19%  Similarity=0.236  Sum_probs=82.6

Q ss_pred             CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecCC------CeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSPY------SIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~~------~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+++.+++||++++ +++||.|||.|.|.+.+.      ..|.|+|||++++++|++||++.|+|.+++.
T Consensus        18 ~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          18 FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence            578999999999875689999875 689999999999988654      6999999999999999999999999999998


Q ss_pred             ccCCccceEEEEeecCCCCCCCCCeEEE
Q psy16327        220 HYNGKCEHLEITLDLMNDSRVSPPLMSV  247 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~~~G~l~v  247 (994)
                      ......+....+..|.+.++...|+|.+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          98 GASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             ccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            7654312223556777777777887753

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.41  E-value=7.9e-13  Score=132.49  Aligned_cols=103  Identities=12%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhccc-C
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY-N  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~-~  222 (994)
                      +.++||||+|.+++ +..||+++++ |+||+|||.|.|.+.+  .+.|.|.|||++.+++|++||.+.|+|.++.... .
T Consensus        18 ~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~   96 (150)
T cd04019          18 NRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDD   96 (150)
T ss_pred             CCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCC
Confidence            46899999999976 5889998876 6999999999998864  4699999999999999999999999999986532 2


Q ss_pred             CccceEEEEeecCCCCC--------CCCCeEEEecCCc
Q psy16327        223 GKCEHLEITLDLMNDSR--------VSPPLMSVEMPPL  252 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~--------~~~G~l~v~~~~~  252 (994)
                      +.....|+.  |.+.++        ...|+|.|.++..
T Consensus        97 ~~~~~~W~~--L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          97 RPVPSRWFS--LERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             CccCCceEE--CcCCCCcccccccCcccccEEEEEEec
Confidence            233454554  443321        3568988888653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.41  E-value=6.2e-13  Score=127.74  Aligned_cols=97  Identities=19%  Similarity=0.229  Sum_probs=76.3

Q ss_pred             CCCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        146 GLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      .+.++||||+|.+++ +++||++++ +++||.|||.|.|.+..  ...|.|+|||++..+ |++||++.|+|++++....
T Consensus        18 ~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~   95 (118)
T cd08681          18 KLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE   95 (118)
T ss_pred             cCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCC
Confidence            357899999999976 488898875 58999999999998875  568999999999876 8999999999999876422


Q ss_pred             CccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        223 GKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                         ...|+  +|.+. +...|+|.|.++
T Consensus        96 ---~~~w~--~L~~~-~~~~G~i~l~l~  117 (118)
T cd08681          96 ---FDDWY--ELTLK-GRYAGEVYLELT  117 (118)
T ss_pred             ---CCCcE--EeccC-CcEeeEEEEEEE
Confidence               23334  44432 346799998774

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.41  E-value=5.3e-13  Score=126.28  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=64.8

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ..+||||+|.++ .+.+||+++++++||+|||.|.|.+.+   ...|.|.|||+|++++|++||.+.|+|++|+...
T Consensus        24 ~~~DPYv~v~~~-~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          24 FDMDPFVIISFG-RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CccCceEEEEEC-CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence            358999999995 458899999999999999999998753   2489999999999999999999999999998764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.41  E-value=3.8e-13  Score=133.84  Aligned_cols=74  Identities=27%  Similarity=0.537  Sum_probs=67.0

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      ..+||||+|.+++ +++||+++++++||+|||+|.|.+.. ...|.|+|||+|++++|++||.+.++|.+++...+
T Consensus        20 ~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~   94 (145)
T cd04038          20 TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK   94 (145)
T ss_pred             CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence            5789999999954 58999999999999999999998765 56899999999999999999999999999987644

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.40  E-value=2.6e-13  Score=128.97  Aligned_cols=70  Identities=24%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             CCCCCeEEEeecc---CCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        148 LKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       148 ~~~dPyv~v~~~g---~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..+||||+|.+..   ..++||+|++||+||+|||+|.|.|...    ..|.|.|||+|+|+++++||++.++++++
T Consensus        30 g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~  106 (118)
T cd08677          30 AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV  106 (118)
T ss_pred             CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc
Confidence            3489999999942   2478899999999999999999988753    47999999999999999999999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.39  E-value=1.4e-12  Score=125.40  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      +..+||||+|.+++. ..||+++++++||.|||+|.|.+.. ...|.|.|||++.+.++++||.+.++|.++...     
T Consensus        19 ~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~-----   92 (119)
T cd08377          19 GGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-----   92 (119)
T ss_pred             CCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC-----
Confidence            456899999999655 6899999999999999999998876 679999999999999999999999999998533     


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEec
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      ...|+.|..........|+|.|.+
T Consensus        93 ~~~~~~l~~~~~~~~~~G~i~l~~  116 (119)
T cd08377          93 ERKWYALKDKKLRTRAKGSILLEM  116 (119)
T ss_pred             CceEEECcccCCCCceeeEEEEEE
Confidence            234565554444445789988876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.38  E-value=1.9e-12  Score=126.00  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             CCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      .+.++||||+|.++++ .+||+++++++||+|||.|.|.+. +...|.|.|||+++++ |++||.+.+++.++..     
T Consensus        20 ~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~~-----   92 (126)
T cd04046          20 SGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFLGQATLSADPNDS-----   92 (126)
T ss_pred             CCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCceEEEEEecccCCC-----
Confidence            3567999999999765 889999999999999999999664 4568999999999875 8899999999987522     


Q ss_pred             cceEEEEee--cCCCCCCCCCeEEEecCC
Q psy16327        225 CEHLEITLD--LMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~--L~~~~~~~~G~l~v~~~~  251 (994)
                      ....++.|.  +.+.++.+.|+|.|.++.
T Consensus        93 ~~~~~~~l~~~~~~~~~~~~G~i~~~~~~  121 (126)
T cd04046          93 QTLRTLPLRKRGRDAAGEVPGTISVKVTS  121 (126)
T ss_pred             cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence            223344443  223556789999998753

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.38  E-value=1.3e-12  Score=124.20  Aligned_cols=73  Identities=25%  Similarity=0.475  Sum_probs=64.8

Q ss_pred             CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      .++||||+|.+.  |+..+||+++++|+||+|||.|.|.+.+     ...|.|+|||+|++++|++||++.|+|++++..
T Consensus        21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence            578999999984  3457899999999999999999997764     368999999999999999999999999999743

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.37  E-value=3e-12  Score=122.32  Aligned_cols=96  Identities=22%  Similarity=0.364  Sum_probs=81.7

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +.++||||+|.++|...++|+++++++||.|||+|.+.+..  ...|.|.|||++.++++++||++.++|.++...    
T Consensus        17 ~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~----   92 (115)
T cd04040          17 NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPE----   92 (115)
T ss_pred             CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCC----
Confidence            45789999999988778999999999999999999998764  478999999999999999999999999998653    


Q ss_pred             cceEEEEeecCCCCCCCCCeEEE
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSV  247 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v  247 (994)
                       .....+++|...++...|.|.+
T Consensus        93 -~~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          93 -ETTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             -CcEEEEEECcCCCCccCceEEc
Confidence             2245777888777777787654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.37  E-value=2e-12  Score=125.12  Aligned_cols=99  Identities=21%  Similarity=0.358  Sum_probs=80.5

Q ss_pred             CCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        148 LKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       148 ~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      ..+||||+|.+++ ...+||+++++++||.|||.|.|.+.+ ...|.|+|||++.+++|++||.+.++|.++......  
T Consensus        22 ~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~--   99 (124)
T cd04044          22 GTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQ--   99 (124)
T ss_pred             CCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccc--
Confidence            3589999999988 578999999999999999999998875 679999999999999999999999999999875332  


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      ..  ....|. .++...|+|.|.+..
T Consensus       100 ~~--~~~~~~-~~~k~~G~i~~~l~~  122 (124)
T cd04044         100 EN--LTKNLL-RNGKPVGELNYDLRF  122 (124)
T ss_pred             cC--cchhhh-cCCccceEEEEEEEe
Confidence            11  222333 344567999998754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.37  E-value=1.4e-12  Score=130.04  Aligned_cols=87  Identities=22%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec-----------------CCCeEEEEEecCCCCCCCcc
Q psy16327        148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTFRRDCT  206 (994)
Q Consensus       148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~-----------------~~~~l~~~V~D~d~~~~d~~  206 (994)
                      ..+||||+|.+.+.    +++||+++++|+||+|||+|.|.+.                 ....|.|.|||++.+++|+|
T Consensus        17 g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf   96 (148)
T cd04010          17 GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF   96 (148)
T ss_pred             CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence            46899999999762    5789999999999999999999884                 12479999999999999999


Q ss_pred             cceEEeehhhhhcccCCccceEEEEeecCC
Q psy16327        207 IGEKRLNIYGVLAHYNGKCEHLEITLDLMN  236 (994)
Q Consensus       207 lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~  236 (994)
                      ||++.|+|.++....  .....|+.|..++
T Consensus        97 LG~v~i~l~~l~~~~--~~~~~W~~L~~~~  124 (148)
T cd04010          97 LGEVRIPLRGLDLQA--GSHQAWYFLQPRE  124 (148)
T ss_pred             eEEEEEecccccccC--CcCcceeecCCcc
Confidence            999999999986541  1234566555443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.37  E-value=1.7e-12  Score=125.65  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ...+||||+|.+++. .+||+++++++||.|||+|.|.+..  ...|.|.|||++.++++++||.+.++|.++.....  
T Consensus        18 ~~~~DPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~--   94 (123)
T cd04025          18 NGTSDPFVRVFYNGQ-TLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ--   94 (123)
T ss_pred             CCCcCceEEEEECCE-EEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCC--
Confidence            346899999999654 7899999999999999999998865  46899999999999999999999999999865321  


Q ss_pred             cceEEEEeecCCC----CCCCCCeEEEec
Q psy16327        225 CEHLEITLDLMND----SRVSPPLMSVEM  249 (994)
Q Consensus       225 ~~~~~~~l~L~~~----~~~~~G~l~v~~  249 (994)
                       ...|+.|.....    ++...|.|.|.+
T Consensus        95 -~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          95 -EEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             -CCCEEECCCCCCCCccccCceEEEEEEe
Confidence             234554443321    223567888765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>KOG3209|consensus

Probab=99.37  E-value=1.1e-12  Score=150.65  Aligned_cols=164  Identities=27%  Similarity=0.433  Sum_probs=115.0

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhccccccccccccc--ccCCccccCCCCCCCcCCCCcc----
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVV--SQGSQRFLYPQHGVGVSSSSAV----  581 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~--~q~~~r~~~~~~~~~~~~~~~~----  581 (994)
                      ...||++|++...++++.|+..|++..++|+.++....    .|....-+..  ++..  ..++....-.+ +.++    
T Consensus       130 ~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~----g~~n~~~~~~~~E~~e--~s~~~s~~m~s-sy~aPsts  202 (984)
T KOG3209|consen  130 ELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDP----GWENGSGQNYSVEMEE--SSYPTSSDMPS-SYFAPSTS  202 (984)
T ss_pred             cccCCCcchhcccccCcceeehhccCCCCcccccccCc----cccccCCcccchhhhh--ccCCccCCCcc-cccccccC
Confidence            34789999999999999999999999999999876421    1211111110  0000  00111000000 0110    


Q ss_pred             ----ccCCCc-ccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcc
Q psy16327        582 ----SFSTGV-TEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGT  656 (994)
Q Consensus       582 ----~~~~~~-~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~  656 (994)
                          ...... ....+.++|||..||+.++++|.+||++|+|++|.|-|||.....+....+.+.+||+||+.--+.-..
T Consensus       203 ~s~~~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg  282 (984)
T KOG3209|consen  203 QSTTPMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYG  282 (984)
T ss_pred             CCCCcccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccce
Confidence                000000 123456789999999999999999999999999999999976666666666788999999999888788


Q ss_pred             eeeeccCCCccccCCCCCCCCC
Q psy16327        657 RYFVDHNTRSTTFEDPRPGVPK  678 (994)
Q Consensus       657 ~yfv~hn~r~tt~~dPr~~~~~  678 (994)
                      .|||+|+++.++|+.|.+...+
T Consensus       283 ~yyvdHiN~~sq~enpvleakr  304 (984)
T KOG3209|consen  283 TYYVDHINRKSQYENPVLEAKR  304 (984)
T ss_pred             eEEecccchhhhhccchhhccc
Confidence            9999999999999999875544

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.36  E-value=1.8e-12  Score=123.10  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCc-ceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKW-NEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~W-ne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ...+||||+|.+++ +++||+++++++||.| ||.|.|.+..    ...|.|+|||+|.+++|++||++.++|.++....
T Consensus        18 ~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~   96 (110)
T cd08688          18 SDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKD   96 (110)
T ss_pred             CCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccC
Confidence            45689999999966 6999999999999999 9999998865    3689999999999999999999999999998753


Q ss_pred             CCccceEEEE
Q psy16327        222 NGKCEHLEIT  231 (994)
Q Consensus       222 ~~~~~~~~~~  231 (994)
                      .......|+.
T Consensus        97 ~~~~~~~w~~  106 (110)
T cd08688          97 SVSQISGWFP  106 (110)
T ss_pred             CccccCCeEE
Confidence            2333344443

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.36  E-value=2.7e-12  Score=128.37  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=65.1

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-C--CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ..+||||+|.++|+ +.||+++++++||+|||+|.|.+. +  ...|.|+|||+|.+++|++||.+.|+|+++....
T Consensus        33 ~~~DPYV~V~~~g~-~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          33 ELVDPYVEVSFAGQ-KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             CCcCcEEEEEECCE-eeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            46899999999876 779999999999999999999763 2  4599999999999999999999999999997753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.35  E-value=1.6e-12  Score=125.92  Aligned_cols=72  Identities=18%  Similarity=0.317  Sum_probs=63.5

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ..+||||+|.+.+    ..++||+++++++||+|||+|.|.+.     ....|.|.|||+|.++++++||++.|+|+++.
T Consensus        31 ~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~  110 (122)
T cd08381          31 SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD  110 (122)
T ss_pred             CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence            4689999999953    34789999999999999999999762     35699999999999999999999999999986


Q ss_pred             c
Q psy16327        219 A  219 (994)
Q Consensus       219 ~  219 (994)
                      .
T Consensus       111 ~  111 (122)
T cd08381         111 L  111 (122)
T ss_pred             c
Confidence            4

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.35  E-value=4.6e-12  Score=123.51  Aligned_cols=97  Identities=18%  Similarity=0.300  Sum_probs=77.4

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-----------RRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~-----------~~d~~lG~~~i~l  214 (994)
                      +.++||||+|.+++ +.+||+++++++||.|||.|.|.+. +...|.|.|||+|..           .+|++||.+.|+|
T Consensus        19 ~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l   97 (127)
T cd04027          19 TGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEV   97 (127)
T ss_pred             CCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEh
Confidence            56789999999954 5889999999999999999999775 457999999999853           4689999999999


Q ss_pred             hhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327        215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      .++...     ..+|+.|.....+..+.|+|.+.+
T Consensus        98 ~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          98 RTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             HHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence            986322     345666655444446799998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.34  E-value=4e-12  Score=122.43  Aligned_cols=92  Identities=21%  Similarity=0.320  Sum_probs=75.4

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      ..+||||+|.+++ +.+||+++++++||.|||.|.+.+.+  ...|.|.|||++.+ +|++||.+.|+|.++...   ..
T Consensus        26 g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~---~~  100 (121)
T cd08391          26 GKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKK---GF  100 (121)
T ss_pred             CCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhccc---Cc
Confidence            3689999999976 58999999999999999999998875  67999999999998 889999999999999753   22


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEec
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      ..  .+++|+..   ..|+|.|.+
T Consensus       101 ~~--~w~~L~~~---~~G~~~~~~  119 (121)
T cd08391         101 ID--EWLPLEDV---KSGRLHLKL  119 (121)
T ss_pred             cc--eEEECcCC---CCceEEEEE
Confidence            33  44455432   568887765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.34  E-value=5.9e-12  Score=127.39  Aligned_cols=99  Identities=20%  Similarity=0.338  Sum_probs=78.1

Q ss_pred             CCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ...++||||+|.+++.+..||+++++++||+|||.|.|.+.. .+.|.|.|||+|.++ +++||.+.|+|+++...   .
T Consensus        54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g---~  129 (158)
T cd04015          54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG---E  129 (158)
T ss_pred             CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC---C
Confidence            457789999999987766899999999999999999997654 468999999999885 57999999999999752   2


Q ss_pred             cceEEEEeecCCCCC---CCCCeEEEecC
Q psy16327        225 CEHLEITLDLMNDSR---VSPPLMSVEMP  250 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~---~~~G~l~v~~~  250 (994)
                      ...  .+++|.+.+.   ...|+|.|.+.
T Consensus       130 ~~~--~w~~L~~~~~~~~~~~~~l~v~~~  156 (158)
T cd04015         130 PVE--GWLPILDSNGKPPKPGAKIRVSLQ  156 (158)
T ss_pred             Ccc--eEEECcCCCCCCCCCCCEEEEEEE
Confidence            233  5566665432   23568888764

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.33  E-value=5.3e-12  Score=125.39  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEe-cCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLL-DHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~-D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ...+||||++.+..  .  .++||+++++|+||+|||+|.|.+. ....|.|.|| |+++++++++||++.|+|+++
T Consensus        48 ~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l  124 (146)
T cd04028          48 KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL  124 (146)
T ss_pred             CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc
Confidence            35689999999943  2  3789999999999999999999886 4459999999 799999999999999999997

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.33  E-value=5.4e-12  Score=124.39  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-----------CCCeEEEEEecCCCCCCCcccceEEe-eh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------PYSIILFRLLDHRTFRRDCTIGEKRL-NI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----------~~~~l~~~V~D~d~~~~d~~lG~~~i-~l  214 (994)
                      +..+||||+|.+++ +++||+++++|+||.|||.|.|.+.           ....|.|+|||+|++++|++||++.+ ++
T Consensus        19 ~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~   97 (135)
T cd04017          19 SGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPL   97 (135)
T ss_pred             CCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeee
Confidence            56799999999965 4899999999999999999999542           12579999999999999999999987 44


Q ss_pred             hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      ..+.....+.....|+.|.   ..+...|+|.|.++.
T Consensus        98 ~~~~~~~~~~~~~~W~~L~---~~~~~~Geil~~~~~  131 (135)
T cd04017          98 VKLDLEEDFPPKLQWFPIY---KGGQSAGELLAAFEL  131 (135)
T ss_pred             eecccCCCCCCCceEEEee---cCCCchhheeEEeEE
Confidence            3333322333455666653   223478999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.33  E-value=4.6e-12  Score=122.18  Aligned_cols=75  Identities=23%  Similarity=0.370  Sum_probs=66.0

Q ss_pred             CCCCCCeEEEeeccCC------ceeeeeecCCCCCCcceEEEEEe--cCCCeEEEEEecCCC----CCCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVDYKN------PKTTRVVKNTYQPKWNEEFTVLV--SPYSIILFRLLDHRT----FRRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~------~~kT~v~k~tlnP~Wne~f~~~v--~~~~~l~~~V~D~d~----~~~d~~lG~~~i~l  214 (994)
                      +.++||||+|.+.+..      .+||+++++++||+|||+|.|.+  .....|.|+|||+|.    +++|++||++.++|
T Consensus        18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l   97 (120)
T cd04048          18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTL   97 (120)
T ss_pred             CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEH
Confidence            5789999999997753      48999999999999999999964  345689999999998    88999999999999


Q ss_pred             hhhhccc
Q psy16327        215 YGVLAHY  221 (994)
Q Consensus       215 ~~~~~~~  221 (994)
                      .+++...
T Consensus        98 ~~l~~~~  104 (120)
T cd04048          98 GEIVSSP  104 (120)
T ss_pred             HHHhcCC
Confidence            9998653

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.33  E-value=6.4e-12  Score=122.14  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             CCCCCCeEEEeeccC--CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g~--~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||+|.+++.  ..+||+++++++||.|||+|.|.+..  ...|.|.|||++.++++++||++.|+|+++....+
T Consensus        19 ~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~   98 (126)
T cd04043          19 NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDD   98 (126)
T ss_pred             CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCC
Confidence            457899999998643  46799999999999999999998876  57999999999999999999999999998865443


Q ss_pred             CccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        223 GKCEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      +.....|+  +|..     .|+|.|.+..
T Consensus        99 ~~~~~~w~--~l~~-----~g~i~l~~~~  120 (126)
T cd04043          99 GLPREIWL--DLDT-----QGRLLLRVSM  120 (126)
T ss_pred             CCCceEEE--EcCC-----CCeEEEEEEE
Confidence            44445444  4442     5777776643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>KOG0940|consensus

Probab=99.32  E-value=1e-12  Score=147.29  Aligned_cols=116  Identities=38%  Similarity=0.564  Sum_probs=106.2

Q ss_pred             ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327          4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL   83 (994)
Q Consensus         4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L   83 (994)
                      ....++....++|     +|+|.++.|+.+|++            +||.++++ ++..++.+|..||.+||..++|..++
T Consensus       172 ~~~~~g~~~~~~l-----~p~g~~~~v~~~n~~------------~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~  233 (358)
T KOG0940|consen  172 ESEVLGQITTQEL-----KPNGANIQVTEENKK------------EYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLL  233 (358)
T ss_pred             chhhcCCccceee-----cCCCcccccccccHH------------HHHHHHHH-HHHHHHHHHHHHHhccccccCCcccc
Confidence            3455667777888     588999999999999            99999999 89999999999999999999999999


Q ss_pred             cCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEE--ecCcccccc
Q psy16327         84 KYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEE  137 (994)
Q Consensus        84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~  137 (994)
                      ++|.+.|++.++||..++|+++|+.++.|.+|..++++|.|||+.  .|++++++.
T Consensus       234 ~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r  289 (358)
T KOG0940|consen  234 RIFDEMELELALSGDPEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIR  289 (358)
T ss_pred             cccchhhHHHHhcCCcccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHh
Confidence            999999999999999999999999999999999999999999996  566666655

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.32  E-value=5.7e-12  Score=118.59  Aligned_cols=80  Identities=25%  Similarity=0.404  Sum_probs=67.7

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ...+||||+|+++| +++||+++++|+||+|||.|.|.+..  .+.|.|.|||++.   |++||.+.|+|++++... +.
T Consensus        18 ~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~   92 (105)
T cd04050          18 TKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGSLTLPLSELLKEP-DL   92 (105)
T ss_pred             CCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEEEEEEHHHhhccc-cc
Confidence            46799999999977 59999999999999999999998874  5799999999986   789999999999998764 23


Q ss_pred             cceEEEE
Q psy16327        225 CEHLEIT  231 (994)
Q Consensus       225 ~~~~~~~  231 (994)
                      ....|+.
T Consensus        93 ~~~~w~~   99 (105)
T cd04050          93 TLDQPFP   99 (105)
T ss_pred             eeeeeEe
Confidence            3344443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.31  E-value=3.7e-12  Score=123.70  Aligned_cols=71  Identities=20%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEe-c--CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-S--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v-~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      +.++||||+|.++|+ ++||+++++++||+|||+|.|.. .  ....|.|+|||+|.+++|++||.+.++|....
T Consensus        45 ~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          45 FTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            567999999999776 99999999999999999999953 3  36799999999999999999999999998664

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.31  E-value=6.8e-12  Score=122.49  Aligned_cols=85  Identities=25%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEE-EecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTV-LVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~-~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ..+||||+|.+.  ..+++||+++++++||+|||+|.| .+..    ...|.|+|||+|++++|++||++.|+|+++--.
T Consensus        36 ~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          36 GTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             CCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence            568999999984  344679999999999999999999 4542    347999999999999999999999999988443


Q ss_pred             cCCccceEEEEeecC
Q psy16327        221 YNGKCEHLEITLDLM  235 (994)
Q Consensus       221 ~~~~~~~~~~~l~L~  235 (994)
                      +.+   .+.++|.|+
T Consensus       116 ~~~---~~~~~~~~~  127 (128)
T cd08388         116 NEG---ELLVSREIQ  127 (128)
T ss_pred             CCc---eEEEEEecc
Confidence            222   244555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.30  E-value=4.5e-12  Score=123.67  Aligned_cols=85  Identities=21%  Similarity=0.261  Sum_probs=68.9

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ..+||||+|.+..    ..++||+++++++||+|||+|.|.+..    ...|.|.|||+++++++++||++.|+|+++--
T Consensus        35 g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~  114 (128)
T cd08392          35 KKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF  114 (128)
T ss_pred             CCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence            5689999999842    236799999999999999999998865    45999999999999999999999999999843


Q ss_pred             ccCCccceEEEEe
Q psy16327        220 HYNGKCEHLEITL  232 (994)
Q Consensus       220 ~~~~~~~~~~~~l  232 (994)
                      ...+.....|+.|
T Consensus       115 ~~~~~~~~~W~~l  127 (128)
T cd08392         115 EDTDSQRFLWYPL  127 (128)
T ss_pred             CCCCccccceEEC
Confidence            3223344455543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.30  E-value=5.8e-12  Score=121.04  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             CCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceEE
Q psy16327        151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLE  229 (994)
Q Consensus       151 dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~~  229 (994)
                      ||||+|++++ ++.||++++++ ||.|||+|.|.+. .++.|.|+|||+|.+ +|||||.+.|+|+++....+ .+...|
T Consensus        21 dPYV~Ik~g~-~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~-~~~~~W   96 (127)
T cd08394          21 NTYVTLKVQN-VKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNE-EGPGEW   96 (127)
T ss_pred             CCeEEEEECC-EEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCC-CCCCcc
Confidence            8999999954 58899999884 9999999999875 456799999999966 89999999999999987643 445667


Q ss_pred             EEeecC
Q psy16327        230 ITLDLM  235 (994)
Q Consensus       230 ~~l~L~  235 (994)
                      +.|...
T Consensus        97 y~L~~~  102 (127)
T cd08394          97 LTLDSE  102 (127)
T ss_pred             EecChH
Confidence            766643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.29  E-value=7.1e-12  Score=118.88  Aligned_cols=70  Identities=24%  Similarity=0.373  Sum_probs=60.9

Q ss_pred             CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecC-------CCCCCCcccceEEeehhh
Q psy16327        148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-------RTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~-------d~~~~d~~lG~~~i~l~~  216 (994)
                      ..+||||+|.+++.    .+.||+++++|+||+|||+|+|.+.....|.|.|||+       |.+++|++||.+.|.|..
T Consensus        13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            44899999999752    3589999999999999999999998888999999998       678899999988887754


Q ss_pred             h
Q psy16327        217 V  217 (994)
Q Consensus       217 ~  217 (994)
                      -
T Consensus        93 ~   93 (118)
T cd08686          93 Q   93 (118)
T ss_pred             H
Confidence            3

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.29  E-value=6.9e-12  Score=121.92  Aligned_cols=74  Identities=20%  Similarity=0.343  Sum_probs=64.2

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...+||||+|.+..    ..++||+++++++||+|||+|.|.+..    ...|.|.|||+|.++++++||++.|+|.++.
T Consensus        34 ~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~  113 (125)
T cd04029          34 KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN  113 (125)
T ss_pred             CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence            35799999999842    336899999999999999999998864    4589999999999999999999999999884


Q ss_pred             cc
Q psy16327        219 AH  220 (994)
Q Consensus       219 ~~  220 (994)
                      ..
T Consensus       114 ~~  115 (125)
T cd04029         114 FD  115 (125)
T ss_pred             cc
Confidence            43

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.28  E-value=7.7e-12  Score=122.97  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEeecc------CCceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g------~~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l  214 (994)
                      +..+||||+|.+.+      ...+||+++++|+||+|||+|.|.+..      ...|.|.|||++++++|++||++.|+|
T Consensus        34 ~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l  113 (133)
T cd04009          34 NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL  113 (133)
T ss_pred             CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence            46799999999963      347899999999999999999998754      458999999999999999999999999


Q ss_pred             hhhhcc
Q psy16327        215 YGVLAH  220 (994)
Q Consensus       215 ~~~~~~  220 (994)
                      +++...
T Consensus       114 ~~l~~~  119 (133)
T cd04009         114 NDIPGV  119 (133)
T ss_pred             HHCCcc
Confidence            999754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.27  E-value=8.1e-12  Score=121.16  Aligned_cols=74  Identities=28%  Similarity=0.426  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ...+||||+|.+  ++.+.+||+++++++||.|||.|.|.+..    ...|.|.|||++.+++|++||.+.|+|+++...
T Consensus        34 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  113 (124)
T cd08387          34 SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLS  113 (124)
T ss_pred             CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCC
Confidence            356899999999  44668999999999999999999998764    358999999999999999999999999999643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.26  E-value=1.2e-11  Score=120.32  Aligned_cols=71  Identities=20%  Similarity=0.373  Sum_probs=62.7

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ..+||||+|.+..    ..++||+|+++++||+|||+|.|.+..    ...|.|.|||+|+++++++||++.|+|.++-
T Consensus        35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~  113 (125)
T cd08393          35 QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD  113 (125)
T ss_pred             CCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc
Confidence            4689999999942    346899999999999999999998863    4699999999999999999999999999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.25  E-value=1.6e-11  Score=119.02  Aligned_cols=73  Identities=29%  Similarity=0.435  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ...+||||+|.+.+  ...+||+++++++||+|||.|.|.+..    ...|.|+|||+|++++|++||++.|+|+++..
T Consensus        34 ~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~  112 (124)
T cd08385          34 GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL  112 (124)
T ss_pred             CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC
Confidence            45689999999853  346799999999999999999998764    46899999999999999999999999998844

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>PLN03008 Phospholipase D delta

Probab=99.23  E-value=3.1e-11  Score=145.27  Aligned_cols=100  Identities=20%  Similarity=0.437  Sum_probs=82.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      +.++||||+|.++++...||+|+++++||+|||+|.|.+.. .+.|.|+|||+|.++. ++||++.|+|.+|+..     
T Consensus        74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~G-----  147 (868)
T PLN03008         74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASG-----  147 (868)
T ss_pred             cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCC-ceeEEEEEEHHHcCCC-----
Confidence            57899999999976656799999999999999999998864 6799999999999974 7999999999998664     


Q ss_pred             ceEEEEeecCCCCCC---CCCeEEEecCCc
Q psy16327        226 EHLEITLDLMNDSRV---SPPLMSVEMPPL  252 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~---~~G~l~v~~~~~  252 (994)
                      +.+..+++|.+.++.   ..|+|.|.|...
T Consensus       148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~  177 (868)
T PLN03008        148 ERISGWFPVLGASGKPPKAETAIFIDMKFT  177 (868)
T ss_pred             CceEEEEEccccCCCCCCCCcEEEEEEEEE
Confidence            234577788876652   356898887654

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.23  E-value=3.1e-11  Score=117.16  Aligned_cols=73  Identities=29%  Similarity=0.528  Sum_probs=63.4

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+  ++.+++||+++++++||.|||+|.|.+.+     ...|.|+|||+|+++++++||++.|+|+++..
T Consensus        34 ~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~  113 (125)
T cd08386          34 SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL  113 (125)
T ss_pred             CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence            456899999998  44567899999999999999999996432     35799999999999999999999999999853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.22  E-value=2.4e-11  Score=117.78  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +..+||||+|.+.+    ..++||+++++++||+|||+|.|.+..     ...|.|.|||++++++|++||.+.|+|++.
T Consensus        34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          34 GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence            46799999999964    357899999999999999999997532     468999999999999999999999999983

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG0696|consensus

Probab=99.22  E-value=7.2e-12  Score=137.36  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=67.6

Q ss_pred             CCCCCeEEEee----ccCCceeeeeecCCCCCCcceEEEEEecCCC---eEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS---IILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~----~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~---~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ..+||||++++    .++.++||++|+.+|||+|||+|++.+.++.   .|.|+|||||+...+||||..++.|++|.+.
T Consensus       199 GlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~  278 (683)
T KOG0696|consen  199 GLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA  278 (683)
T ss_pred             CCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc
Confidence            46899999998    2466899999999999999999999998864   8999999999999999999999999999886


Q ss_pred             cC
Q psy16327        221 YN  222 (994)
Q Consensus       221 ~~  222 (994)
                      ..
T Consensus       279 p~  280 (683)
T KOG0696|consen  279 PV  280 (683)
T ss_pred             ch
Confidence            43

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.22  E-value=2.3e-11  Score=117.35  Aligned_cols=74  Identities=23%  Similarity=0.423  Sum_probs=67.6

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +..+||||+|.+++...++|+++++++||.|||.|.|.+.. ...|.|.|||++.+++|++||++.++|.++++.
T Consensus        19 ~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          19 VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence            56899999999987668999999999999999999997754 579999999999999999999999999999876

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.20  E-value=2.6e-11  Score=115.03  Aligned_cols=73  Identities=25%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             CCCCCCeEEEeeccCC-----ceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        147 LLKPNPYIELYVDYKN-----PKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~-----~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      +.++||||+|.+.+..     .+||+++++++||+|| +|.|.+..      ...|.|+|||++.+++|++||.+.++|.
T Consensus        18 ~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~   96 (110)
T cd04047          18 FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLD   96 (110)
T ss_pred             CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHH
Confidence            5679999999986642     5899999999999999 78886431      5699999999999999999999999999


Q ss_pred             hhhcc
Q psy16327        216 GVLAH  220 (994)
Q Consensus       216 ~~~~~  220 (994)
                      +++..
T Consensus        97 ~l~~~  101 (110)
T cd04047          97 ELLKS  101 (110)
T ss_pred             HHhcC
Confidence            99843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.19  E-value=4.2e-11  Score=116.30  Aligned_cols=73  Identities=21%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEeeccCC-ceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~-~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+++.. ..||+++++++||+|||+|.|.+.  ....|.|+|||+|.+++|++||.+.|+|.+..-
T Consensus        18 ~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          18 NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            5689999999997653 368899999999999999999764  356899999999999999999999999998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.19  E-value=5.5e-11  Score=113.83  Aligned_cols=97  Identities=22%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG  223 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~  223 (994)
                      ..+||||+|.++++..+||+++++ +||.|||+|.|.+...    ..|.|.|||++.+.++.++|.+.|...+.     +
T Consensus        16 ~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-----~   89 (117)
T cd08383          16 GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-----G   89 (117)
T ss_pred             CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-----C
Confidence            468999999998876789999999 9999999999988762    47888899998877777777765544332     2


Q ss_pred             ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        224 KCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      .....|+.|..........|+|.|.+.
T Consensus        90 ~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          90 QGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             CcceeEEECccCCCCCCcCceEEEEEE
Confidence            333445555444444567899988763

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.19  E-value=5.5e-11  Score=115.00  Aligned_cols=74  Identities=20%  Similarity=0.406  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +..+||||+|.+  ++.+.+||+++++++||.|||.|.|.+..    ...|.|.|||++.++++++||++.|+|+++...
T Consensus        33 ~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~  112 (123)
T cd08390          33 VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV  112 (123)
T ss_pred             CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence            456899999998  34557899999999999999999998864    358999999999999999999999999998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>KOG1891|consensus

Probab=99.19  E-value=3.7e-11  Score=121.26  Aligned_cols=74  Identities=38%  Similarity=0.873  Sum_probs=67.3

Q ss_pred             CCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCC
Q psy16327        506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFST  585 (994)
Q Consensus       506 ~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~  585 (994)
                      ..+.|||+||...++-.||.|||||++++|.|.||-.-                                          
T Consensus        89 sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPler------------------------------------------  126 (271)
T KOG1891|consen   89 SEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLER------------------------------------------  126 (271)
T ss_pred             cccCCCCCCcceeeEecCceeEeecCCCcccccChhhh------------------------------------------
Confidence            45779999999999999999999999999999999631                                          


Q ss_pred             CcccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327        586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG  630 (994)
Q Consensus       586 ~~~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~  630 (994)
                               ..||+||++.+++.-.+||+||.+|.+|++||....
T Consensus       127 ---------EgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s  162 (271)
T KOG1891|consen  127 ---------EGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS  162 (271)
T ss_pred             ---------ccCCcchhhccccccceeeeecccchhhhcCCCCCC
Confidence                     258999999999999999999999999999998754

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.18  E-value=3.2e-11  Score=116.88  Aligned_cols=70  Identities=13%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             CCCCCeEEEeec--c---CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        148 LKPNPYIELYVD--Y---KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       148 ~~~dPyv~v~~~--g---~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..+||||+|.+-  .   ..++||+++++++||+|||+|.|.|..    ...|.|.|||+++++++++||++.|+|+++
T Consensus        33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~  111 (124)
T cd08680          33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF  111 (124)
T ss_pred             CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence            358999999973  2   247899999999999999999999875    359999999999999999999999999998

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.18  E-value=3.9e-11  Score=116.71  Aligned_cols=73  Identities=22%  Similarity=0.381  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCC--CCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTF--RRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~--~~d~~lG~~~i~l~~  216 (994)
                      +..+||||+|.+.+    ..++||+++++++||+|||+|.|.+..    ...|.|.|||++.+  ++|++||++.|+|.+
T Consensus        34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~  113 (127)
T cd04030          34 SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD  113 (127)
T ss_pred             CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence            56799999999853    457899999999999999999998864    36899999999986  689999999999999


Q ss_pred             hhc
Q psy16327        217 VLA  219 (994)
Q Consensus       217 ~~~  219 (994)
                      +..
T Consensus       114 l~~  116 (127)
T cd04030         114 LDL  116 (127)
T ss_pred             ccc
Confidence            843

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.16  E-value=6.6e-11  Score=114.39  Aligned_cols=71  Identities=25%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             CCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        148 LKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       148 ~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ..+||||+|.+.+  .  .++||+++++++||.|||+|.|.+..    ...|.|.|||++.++++++||++.|+|.++.
T Consensus        34 ~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~  112 (123)
T cd08521          34 KRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD  112 (123)
T ss_pred             CCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence            4689999999842  1  46899999999999999999998875    4589999999999999999999999999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.16  E-value=6.6e-11  Score=114.00  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCC-CCcccceEEeehhhhh
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFR-RDCTIGEKRLNIYGVL  218 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~-~d~~lG~~~i~l~~~~  218 (994)
                      ..+||||+|.+..    ..++||+++++++||+|||+|.|.+..   ...|.|.|||++.+. ++++||.+.|+|.++.
T Consensus        30 g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~  108 (119)
T cd08685          30 GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV  108 (119)
T ss_pred             CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence            4689999999953    235689999999999999999998764   247889999999886 4789999999999996

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.16  E-value=5.7e-11  Score=117.13  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      ..+||||+|.+...    .++||+++++++||+|||.|.|.|..    ...|.|.|||+|.+++|++||.+.|.+..
T Consensus        36 ~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          36 LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            34899999998542    25689999999999999999998875    46899999999999999999999998853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.15  E-value=9.4e-11  Score=113.67  Aligned_cols=73  Identities=27%  Similarity=0.560  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +.++||||+|.+++. .++|+++++ ++||.|||.|.|.+...     ..|.|.|||++.+.+|++||.+.|+|.+++..
T Consensus        19 ~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~   97 (124)
T cd04049          19 LGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEE   97 (124)
T ss_pred             CCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhC
Confidence            467999999999654 788988874 99999999999988764     68999999999999999999999999999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.13  E-value=1.7e-10  Score=114.04  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEeecc---CCceeeeeecCCCCCCcceEEEEEecC-----------------CCeEEEEEecCCCCCCCcc
Q psy16327        147 LLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSP-----------------YSIILFRLLDHRTFRRDCT  206 (994)
Q Consensus       147 f~~~dPyv~v~~~g---~~~~kT~v~k~tlnP~Wne~f~~~v~~-----------------~~~l~~~V~D~d~~~~d~~  206 (994)
                      +..+||||+|.+++   .+.+||+++++++||.|||.|.|.+..                 ...|.|.|||++.+++++|
T Consensus        16 ~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~   95 (137)
T cd08675          16 NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF   95 (137)
T ss_pred             CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence            45789999999974   558999999999999999999997754                 3589999999999989999


Q ss_pred             cceEEeehhhhhcccCCccceEEEEeecC
Q psy16327        207 IGEKRLNIYGVLAHYNGKCEHLEITLDLM  235 (994)
Q Consensus       207 lG~~~i~l~~~~~~~~~~~~~~~~~l~L~  235 (994)
                      ||++.|+|.++...   .....|+.|.-+
T Consensus        96 IG~~~i~l~~l~~~---~~~~~W~~L~~~  121 (137)
T cd08675          96 LGEVRIPLQGLQQA---GSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEehhhccCC---CcccceEecCCc
Confidence            99999999998733   223445544433

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.13  E-value=1e-10  Score=118.80  Aligned_cols=74  Identities=22%  Similarity=0.321  Sum_probs=63.4

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEec-C----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS-P----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~-~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +..+||||+|.+.    +..++||+|+++++||+|||.|.|.+. .    ...|.|.|||+|.+++|++||++.|+++++
T Consensus        45 ~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~  124 (162)
T cd04020          45 GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG  124 (162)
T ss_pred             CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence            4679999999883    345789999999999999999999642 2    358999999999999999999999999998


Q ss_pred             hcc
Q psy16327        218 LAH  220 (994)
Q Consensus       218 ~~~  220 (994)
                      ...
T Consensus       125 ~~~  127 (162)
T cd04020         125 KSY  127 (162)
T ss_pred             ccC
Confidence            543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.12  E-value=1.5e-10  Score=112.43  Aligned_cols=81  Identities=26%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ...||||++.+.  ..+++||+|+++ +||+|||+|.|. +..    ...|.|.|||+++++++++||++.|+|+++...
T Consensus        35 ~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~  113 (124)
T cd08389          35 GASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLE  113 (124)
T ss_pred             CCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCC
Confidence            447999998773  356789999988 999999999997 653    468999999999999999999999999999332


Q ss_pred             cCCccceEEEEe
Q psy16327        221 YNGKCEHLEITL  232 (994)
Q Consensus       221 ~~~~~~~~~~~l  232 (994)
                         .....|+.|
T Consensus       114 ---~~~~~w~~L  122 (124)
T cd08389         114 ---GETTVWLTL  122 (124)
T ss_pred             ---CCceEEEeC
Confidence               234445544

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.10  E-value=1.3e-10  Score=114.59  Aligned_cols=70  Identities=26%  Similarity=0.350  Sum_probs=61.2

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      +..+||||+|.+.+.    .++||+|+++++||.|||+|.|.+.    +...|.|+|||+|+++++++||++.|++..
T Consensus        33 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          33 SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence            457899999998532    2578999999999999999999886    346899999999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.10  E-value=1.3e-10  Score=114.58  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      ...+||||+|.+..  .  .++||+|+++++||+|||+|.|.|..    ...|.|.|||+|.++++++||.+.|...
T Consensus        33 ~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~  109 (136)
T cd08406          33 KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA  109 (136)
T ss_pred             CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence            45689999999842  2  26789999999999999999998864    4589999999999999999999998664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.08  E-value=2.5e-10  Score=149.29  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=75.5

Q ss_pred             cCCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       145 ~~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      +.|..+||||+|+++.++++||+|+||+.||.|||+|+|.+..   ...|.|+|||+|+|++| .||.+.|+|.+++...
T Consensus      1994 ~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv~~~ 2072 (2102)
T PLN03200       1994 QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVVMEG 2072 (2102)
T ss_pred             cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHhcCc
Confidence            4578899999999975558899999999999999999986654   25799999999999655 9999999999998752


Q ss_pred             CCccceEEEEeecCCCCCCCCCe---EEEec
Q psy16327        222 NGKCEHLEITLDLMNDSRVSPPL---MSVEM  249 (994)
Q Consensus       222 ~~~~~~~~~~l~L~~~~~~~~G~---l~v~~  249 (994)
                         ...  -++.|.++ +.+.|.   |.|.+
T Consensus      2073 ---~~~--~~~~L~~~-~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200       2073 ---TYS--GEYSLNPE-SNKDGSSRTLEIEF 2097 (2102)
T ss_pred             ---eee--eeeecCcc-cccCCCcceEEEEE
Confidence               222  33445432 233454   66654

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.07  E-value=2e-10  Score=112.78  Aligned_cols=70  Identities=26%  Similarity=0.374  Sum_probs=61.2

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      +..+||||+|.+.+    ..++||+++++++||+|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|++..
T Consensus        31 ~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          31 NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence            35689999999853    236899999999999999999998864    35899999999999999999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.06  E-value=4.1e-10  Score=109.06  Aligned_cols=73  Identities=22%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +..+||||+|.+.+    ...+||+++++++||.|||.|.|. +.+    ...|.|+|||++++ ++++||.+.|+|+++
T Consensus        33 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l  111 (123)
T cd04035          33 NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKL  111 (123)
T ss_pred             CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccC
Confidence            46789999999843    336899999999999999999995 433    46899999999999 889999999999999


Q ss_pred             hcc
Q psy16327        218 LAH  220 (994)
Q Consensus       218 ~~~  220 (994)
                      ...
T Consensus       112 ~~~  114 (123)
T cd04035         112 KPN  114 (123)
T ss_pred             CCC
Confidence            765

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.06  E-value=2.7e-10  Score=112.43  Aligned_cols=71  Identities=21%  Similarity=0.350  Sum_probs=61.3

Q ss_pred             CCCCCCeEEEeec--c--CCceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~--g--~~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +.++||||+|.+.  +  ..++||+++++++||.|||+|.|.+.    ....|.|+|||++.+++|++||.+.|++.+.
T Consensus        33 ~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          33 NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            4578999999983  2  23578999999999999999999875    2458999999999999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.05  E-value=4.7e-10  Score=112.48  Aligned_cols=68  Identities=25%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEeeccC----------------------------CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEe
Q psy16327        147 LLKPNPYIELYVDYK----------------------------NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLL  196 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----------------------------~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~  196 (994)
                      +..+||||+|.+...                            +.+||+++++|+||.|||+|.|.+..  ...|.|+||
T Consensus        46 ~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~  125 (153)
T cd08676          46 NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIW  125 (153)
T ss_pred             CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEE
Confidence            467999999998531                            34789999999999999999998865  579999999


Q ss_pred             cCCCCCCCcccceEEeehhhhh
Q psy16327        197 DHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       197 D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      |++    |++||.+.|+|+++.
T Consensus       126 D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         126 DHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             ecC----CCeEEEEEEEHHHhC
Confidence            997    889999999999997

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.05  E-value=2.2e-10  Score=113.08  Aligned_cols=70  Identities=24%  Similarity=0.329  Sum_probs=60.5

Q ss_pred             CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      ..++||||+|.+.+  .  .++||+++++++||.|||+|.|.+...    ..|.|.|||+|++++|++||.+.|++..
T Consensus        33 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          33 GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence            46799999999943  2  357899999999999999999987643    3799999999999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.03  E-value=1.4e-09  Score=107.88  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=74.7

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCC-CC---CCcccceEEeehhhhhcccC
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT-FR---RDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~-~~---~d~~lG~~~i~l~~~~~~~~  222 (994)
                      .+.+|||+|.+||....+|+++.+++||.|||+|.|... +.+.|.|.||+.+. ++   ++++||.+.|++.+|..   
T Consensus        25 ~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~---  101 (146)
T cd04013          25 PKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS---  101 (146)
T ss_pred             CcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC---
Confidence            456899999999986789999999999999999999654 45789999986543 32   67899999999999973   


Q ss_pred             CccceEEEEeecCCCCC--------CCCCeEEEecCC
Q psy16327        223 GKCEHLEITLDLMNDSR--------VSPPLMSVEMPP  251 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~--------~~~G~l~v~~~~  251 (994)
                      +.....|+.|.-.+.+.        ...+.|.|.+.+
T Consensus       102 ~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf  138 (146)
T cd04013         102 RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY  138 (146)
T ss_pred             CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence            34445555544433332        233567776644

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.02  E-value=2.9e-10  Score=112.11  Aligned_cols=68  Identities=19%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             CCCCCCeEEEeec-cC---CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVD-YK---NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~-g~---~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l  214 (994)
                      +..+||||+|.+. |.   .++||+++++|+||.|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|..
T Consensus        32 ~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          32 SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence            4579999999973 32   35799999999999999999998853    236999999999999999999987554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=98.99  E-value=4.3e-10  Score=110.63  Aligned_cols=69  Identities=25%  Similarity=0.338  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      +.++||||+|.+.  |.  .++||+++++++||.|||+|.|.+...    ..|.|+|||+|.+++|++||++.|++.
T Consensus        32 ~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          32 TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            4678999999984  32  257899999999999999999987542    369999999999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=98.99  E-value=1.2e-09  Score=106.98  Aligned_cols=74  Identities=22%  Similarity=0.379  Sum_probs=65.2

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC---CeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~---~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ...+||||.|.+.+    ...+||+++++++||.|||+|.|.+...   ..|.|.|||++.++++++||.+.++|+++..
T Consensus        31 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~  110 (131)
T cd04026          31 NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK  110 (131)
T ss_pred             CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCc
Confidence            45689999999963    3578999999999999999999987653   5899999999999999999999999999975


Q ss_pred             c
Q psy16327        220 H  220 (994)
Q Consensus       220 ~  220 (994)
                      .
T Consensus       111 ~  111 (131)
T cd04026         111 M  111 (131)
T ss_pred             C
Confidence            4

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=98.96  E-value=8.5e-10  Score=109.05  Aligned_cols=69  Identities=19%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      +..+||||+|.+.+.    .++||+++++++||+|||.|.|.+.+    ...|.|.|||++.++++++||++.|...
T Consensus        32 ~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~  108 (137)
T cd08409          32 HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPF  108 (137)
T ss_pred             CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCc
Confidence            456899999998542    36799999999999999999998864    3589999999999999999999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.95  E-value=9.9e-10  Score=107.17  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=58.6

Q ss_pred             CCCCCeEEEeec--cC--CceeeeeecCCC-CCCcceEEEEEecCC---CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        148 LKPNPYIELYVD--YK--NPKTTRVVKNTY-QPKWNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       148 ~~~dPyv~v~~~--g~--~~~kT~v~k~tl-nP~Wne~f~~~v~~~---~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..+||||+|.+-  |+  .++||+++|+|+ ||+|||+|.|.|...   ..|.|.|||++.++++++||.+.+.....
T Consensus        33 ~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          33 LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence            446999999874  32  368899999996 699999999988753   38889999999999999999999988653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG1028|consensus

Probab=98.93  E-value=2.4e-09  Score=124.43  Aligned_cols=101  Identities=25%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             CCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        149 KPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       149 ~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      .+||||++.+-  -+.++||+|.++||||.|||+|.|.|..    ..+|.|+|||+|+|.++++||++.|+|..+.....
T Consensus       187 ~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~  266 (421)
T KOG1028|consen  187 TSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST  266 (421)
T ss_pred             CCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccccc
Confidence            68999999984  3457899999999999999999998653    46999999999999999999999999888744321


Q ss_pred             CccceEEEEeecCCCCC---CCCCeEEEecCCcCC
Q psy16327        223 GKCEHLEITLDLMNDSR---VSPPLMSVEMPPLLR  254 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~---~~~G~l~v~~~~~~~  254 (994)
                           +.++.+|+....   ...|||.+.+++...
T Consensus       267 -----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  267 -----TLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             -----ceeeeccccccCCcccccceEEEEEEeecC
Confidence                 335566664322   233899999988653

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=98.92  E-value=1.7e-09  Score=106.99  Aligned_cols=69  Identities=20%  Similarity=0.393  Sum_probs=59.4

Q ss_pred             CCCCCeEEEeecc---C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        148 LKPNPYIELYVDY---K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       148 ~~~dPyv~v~~~g---~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      ..+||||+|.+..   .  .++||+++++++||+|||+|.|.+..    ...|.|.|||++.++++++||++.|.+..
T Consensus        34 ~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~  111 (138)
T cd08408          34 KAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS  111 (138)
T ss_pred             CCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence            4689999999842   2  25799999999999999999998864    35999999999999999999999888764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=98.91  E-value=7.4e-09  Score=100.68  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=73.5

Q ss_pred             CCCCCCeEEEeecc-----CCceeeeeecCCC-CCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDY-----KNPKTTRVVKNTY-QPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g-----~~~~kT~v~k~tl-nP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      +..+||||+|.+.+     ..++||++++++. ||.|||+|.|.+..  .+.|.|.|||++.+ +|++||.+.++|.++.
T Consensus        22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc
Confidence            56789999999954     3468999988776 99999999997653  35799999999998 8999999999999983


Q ss_pred             cccCCccceEEEEeecCCCCC--CCCCeEEEecC
Q psy16327        219 AHYNGKCEHLEITLDLMNDSR--VSPPLMSVEMP  250 (994)
Q Consensus       219 ~~~~~~~~~~~~~l~L~~~~~--~~~G~l~v~~~  250 (994)
                      ..      .  ..++|.+.++  ...|.|.+.++
T Consensus       101 ~g------~--~~~~l~~~~~~~~~~~~l~v~~~  126 (128)
T cd00275         101 QG------Y--RHVPLLDSKGEPLELSTLFVHID  126 (128)
T ss_pred             Cc------e--EEEEecCCCCCCCcceeEEEEEE
Confidence            31      1  3356765544  34577777653

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG0943|consensus

Probab=98.90  E-value=1.2e-10  Score=138.17  Aligned_cols=88  Identities=22%  Similarity=0.337  Sum_probs=81.7

Q ss_pred             ceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHH
Q psy16327         10 LAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDER   89 (994)
Q Consensus        10 ~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~   89 (994)
                      .+..||||     |||-+|+|+..|+-            |||..|++++|.......++|+|+|+.+|||...|.-++++
T Consensus      2827 ~a~qVeL~-----PNGdeilVnkdNVi------------EYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~E 2889 (3015)
T KOG0943|consen 2827 GAGQVELI-----PNGDEILVNKDNVI------------EYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAE 2889 (3015)
T ss_pred             CceeEEEe-----cCCceeeecchhHH------------HHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHh
Confidence            45678995     99999999999999            99999999999887777899999999999999999999999


Q ss_pred             HHHHHHcCCCccChhhhhhcceeCC
Q psy16327         90 ELELILCGMQEIDVEDWQRNAIYRH  114 (994)
Q Consensus        90 EL~~ll~G~~~id~~~l~~~t~y~g  114 (994)
                      +|.+||||..+++|..|..+|-|-.
T Consensus      2890 DfRLiicG~eeVniqmL~e~TgFlD 2914 (3015)
T KOG0943|consen 2890 DFRLIICGCEEVNIQMLIEFTGFLD 2914 (3015)
T ss_pred             HheeeeecccceehhHhhhhccccc
Confidence            9999999999999999999997753

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=98.89  E-value=3.3e-10  Score=124.32  Aligned_cols=66  Identities=35%  Similarity=0.722  Sum_probs=59.1

Q ss_pred             CCCceEeecCCCCeeeeeCCCCcccccCCCCC---------CCCceeeeCCCCCeEEEeCCCCcccccCCchhhh
Q psy16327        375 PPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERL  440 (994)
Q Consensus       375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l---------p~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~  440 (994)
                      -..|.+.++++||+||||..|+.++|++|.+|         -.+|.+..+.+|++||||.+|+++.|..|...+.
T Consensus        14 ~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk   88 (590)
T COG5104          14 RSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK   88 (590)
T ss_pred             HHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence            35699999999999999999999999999544         3679999999999999999999999999986543

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=98.86  E-value=3.8e-09  Score=103.57  Aligned_cols=70  Identities=24%  Similarity=0.332  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      ...+||||+|.+.+.    .++||++++++.||.|||+|.|.+.+    ...|.|.|||+++++++++||.+.|+|++
T Consensus        32 ~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          32 KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence            457899999999653    25789999999999999999998875    46899999999999999999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.73  E-value=3.3e-08  Score=90.28  Aligned_cols=73  Identities=34%  Similarity=0.575  Sum_probs=65.8

Q ss_pred             CCCCCeEEEeeccC--CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~g~--~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ..++|||.+.+.+.  +.++|++++++.||.|||+|.|.+..  ...|.|.|||++..+++.+||.+.++|.++...
T Consensus        19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence            46899999999775  58999999999999999999998877  689999999999888899999999999988654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.71  E-value=2.6e-08  Score=97.17  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             CCCCeEEEeecc--CCceeeeeecCCCC--CCcceEEEEEecC-------------------------CCeEEEEEecCC
Q psy16327        149 KPNPYIELYVDY--KNPKTTRVVKNTYQ--PKWNEEFTVLVSP-------------------------YSIILFRLLDHR  199 (994)
Q Consensus       149 ~~dPyv~v~~~g--~~~~kT~v~k~tln--P~Wne~f~~~v~~-------------------------~~~l~~~V~D~d  199 (994)
                      .+||||++.+.|  ..++||.|..+++|  |.||+.|.|.+.-                         ...|.|+|||.|
T Consensus        24 ~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D  103 (133)
T cd08374          24 MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDND  103 (133)
T ss_pred             ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECc
Confidence            489999999988  45789999999999  9999999985543                         348999999999


Q ss_pred             CCCCCcccceEEeehhhhhcc
Q psy16327        200 TFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       200 ~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      .+++||+||++.++|..+...
T Consensus       104 ~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374         104 KFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             ccCCCCcceEEEEEhhhcccc
Confidence            999999999999999988654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1011|consensus

Probab=98.69  E-value=1.2e-08  Score=116.18  Aligned_cols=102  Identities=20%  Similarity=0.331  Sum_probs=82.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTF-----------RRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~-----------~~d~~lG~~~i~l  214 (994)
                      -.++||||.+.| |+.+++|+.|...|||+|||.|.|...++ ..|.++|||.|.-           .+|||||...|.+
T Consensus       313 tg~sdpyvt~qv-~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtviev  391 (1283)
T KOG1011|consen  313 TGKSDPYVTAQV-GKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEV  391 (1283)
T ss_pred             CCCCCCcEEEee-cccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEE
Confidence            468999999999 78789999999999999999999988875 5999999998863           2479999999888


Q ss_pred             hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCCcCC
Q psy16327        215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLR  254 (994)
Q Consensus       215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~~~  254 (994)
                      ..+    .|. -++|+.|+-...+..+.|-|.+.++....
T Consensus       392 rtl----sge-mdvwynlekrtdksavsgairlhisveik  426 (1283)
T KOG1011|consen  392 RTL----SGE-MDVWYNLEKRTDKSAVSGAIRLHISVEIK  426 (1283)
T ss_pred             Eec----ccc-hhhhcchhhccchhhccceEEEEEEEEEc
Confidence            655    233 35788888777777889977766654443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=98.68  E-value=1.9e-08  Score=89.59  Aligned_cols=65  Identities=35%  Similarity=0.599  Sum_probs=57.4

Q ss_pred             CCCCCCeEEEeeccCCc--eeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEE
Q psy16327        147 LLKPNPYIELYVDYKNP--KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKR  211 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~--~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~  211 (994)
                      ...+||||++.+.+...  ++|++++++.+|.|||.|.|.+.  ....|.|.|||++.+++|++||+++
T Consensus        17 ~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   17 NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred             CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence            45789999999988655  99999999999999999999865  3457999999999999999999975

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=98.67  E-value=8.9e-08  Score=86.88  Aligned_cols=72  Identities=31%  Similarity=0.487  Sum_probs=65.9

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...++|||.+.+++....+|.++++++||.|||.|.+.+..  ...|.|.|||++.+.++.+||.+.+++.++.
T Consensus        17 ~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          17 NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence            35789999999988568999999999999999999998886  6799999999999988999999999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.66  E-value=3.1e-08  Score=121.40  Aligned_cols=72  Identities=25%  Similarity=0.471  Sum_probs=66.2

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ..+||||++.++++..+||+++||||||+|||+|++.|..  ...+.|+|+|||.-.++|+||.+.|+|+.+..
T Consensus      1059 g~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038        1059 GYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred             CCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCc
Confidence            3499999999999989999999999999999999998874  46999999999999999999999999998744

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=98.63  E-value=2.1e-08  Score=72.49  Aligned_cols=30  Identities=60%  Similarity=1.184  Sum_probs=20.3

Q ss_pred             CCCCceEeecCC-CCeeeeeCCCCcccccCC
Q psy16327        374 LPPGWEIRQDTY-GRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       374 lp~~w~~~~~~~-G~~yy~n~~t~~t~w~~P  403 (994)
                      ||+||+++.+++ |+.||||+.|++|+|++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            566677666654 777777777777777665

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>PLN02223 phosphoinositide phospholipase C

Probab=98.59  E-value=7.3e-08  Score=112.46  Aligned_cols=75  Identities=25%  Similarity=0.437  Sum_probs=64.0

Q ss_pred             CCCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        146 GLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      .+..+||||+|.+.|.    ..+||+|.++++||+|||+|.|.+..  -..|.|.|+|+|...+|+|+|.+.|+|+.+..
T Consensus       431 ~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        431 RLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE  510 (537)
T ss_pred             CCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence            3567899999999873    35678888999999999999997753  45899999999999999999999999999855


Q ss_pred             c
Q psy16327        220 H  220 (994)
Q Consensus       220 ~  220 (994)
                      .
T Consensus       511 G  511 (537)
T PLN02223        511 G  511 (537)
T ss_pred             C
Confidence            3

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=98.57  E-value=4.7e-08  Score=70.63  Aligned_cols=30  Identities=57%  Similarity=1.246  Sum_probs=28.7

Q ss_pred             CCCCceEEeCCC-CCeEEEeCCCCceeccCC
Q psy16327        511 LPPGWELRRDPR-GRVYYVDHNTRSTTWQRP  540 (994)
Q Consensus       511 lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P  540 (994)
                      ||+||++++|++ |++||+|+.|++|+|++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            799999999886 999999999999999998

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>PLN02952 phosphoinositide phospholipase C

Probab=98.49  E-value=4.2e-07  Score=108.44  Aligned_cols=89  Identities=17%  Similarity=0.328  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +..+||||+|.+-|    ..++||+++++++||.|||+|.|.+..  -..|.|.|||+|...+|+|+|.+.|+|..+...
T Consensus       494 ~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G  573 (599)
T PLN02952        494 YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG  573 (599)
T ss_pred             cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCC
Confidence            45679999999977    346899999999999999999996653  457999999999999999999999999999654


Q ss_pred             cCCccceEEEEeecCCCCCCCCC
Q psy16327        221 YNGKCEHLEITLDLMNDSRVSPP  243 (994)
Q Consensus       221 ~~~~~~~~~~~l~L~~~~~~~~G  243 (994)
                      .        -.++|.+..+...+
T Consensus       574 y--------R~VpL~~~~G~~l~  588 (599)
T PLN02952        574 I--------RSVPLHDKKGEKLK  588 (599)
T ss_pred             c--------eeEeCcCCCCCCCC
Confidence            2        24566655444433

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.42  E-value=2.8e-07  Score=67.20  Aligned_cols=31  Identities=58%  Similarity=1.371  Sum_probs=30.0

Q ss_pred             CCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       511 lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      ||.||++.++.+|++||+|+.|++++|++|+
T Consensus         1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~   31 (32)
T smart00456        1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR   31 (32)
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence            7999999999999999999999999999996

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=98.37  E-value=1.2e-07  Score=104.58  Aligned_cols=72  Identities=32%  Similarity=0.687  Sum_probs=56.8

Q ss_pred             CCceeeeCCCCCeEEEeCCCCcccccCCchhhhhhccccccccccccccCCccccCCCCCcCCCCCCccccCCCcccccc
Q psy16327        408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDA  487 (994)
Q Consensus       408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (994)
                      ..|++..+++||+||||..|+.++|++|..--.+ .                                        +...
T Consensus        15 s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~-~----------------------------------------e~~l   53 (590)
T COG5104          15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKG-S----------------------------------------EEDL   53 (590)
T ss_pred             HHHHHhhCCCCceEEEecccccccccChHHHhcc-h----------------------------------------Hhhh
Confidence            3499999999999999999999999999631110 0                                        0000


Q ss_pred             cccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        488 DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       488 ~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                                             --.+|.+..+.+|++||+|..||++.|..|...
T Consensus        54 -----------------------~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~   86 (590)
T COG5104          54 -----------------------DVDPWKECRTADGKVYYYNSITRESRWKIPPER   86 (590)
T ss_pred             -----------------------chhhHHHHhhcCCceEEecCccccccccCChhh
Confidence                                   023599999999999999999999999999753

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.36  E-value=3.6e-07  Score=66.61  Aligned_cols=30  Identities=57%  Similarity=1.313  Sum_probs=16.5

Q ss_pred             CCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      ||+||++..+.+|+.||||+.|++++|++|
T Consensus         1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P   30 (32)
T smart00456        1 LPPGWEERKDPDGRPYYYNHETKETQWEKP   30 (32)
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCEEcCCC
Confidence            355555555555555555555555555555

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=108.19  Aligned_cols=99  Identities=24%  Similarity=0.351  Sum_probs=79.7

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      ...|||+++...+.-..||+++++++||+|||+|.+.+.. .+.|.+.|||.+.+++|+++|.+.++|..++.....+.+
T Consensus       457 ~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne  536 (1227)
T COG5038         457 GTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNE  536 (1227)
T ss_pred             CCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccc
Confidence            5689999999887777899999999999999999998875 569999999999999999999999999998776544443


Q ss_pred             eEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        227 HLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       227 ~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      ..++.     .+....|+|.-++..
T Consensus       537 ~~e~~-----~~~k~vGrL~yDl~f  556 (1227)
T COG5038         537 LYEFL-----RNTKNVGRLTYDLRF  556 (1227)
T ss_pred             eeeee-----ccCccceEEEEeeee
Confidence            33332     122356787777643

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.32  E-value=8.3e-07  Score=105.75  Aligned_cols=74  Identities=16%  Similarity=0.314  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +..+||||+|.+-|.    .++||+|+.++.||.|||+|.|.+.  +-..|.|.|+|+|...+|+|+|...|+|..|...
T Consensus       493 ~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G  572 (598)
T PLN02230        493 YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQG  572 (598)
T ss_pred             CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence            456899999999762    3578999999999999999999554  3579999999999989999999999999998553

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.32  E-value=9.1e-07  Score=105.26  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=64.0

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +..+||||+|.+.|.    .++||++++++.||.|||+|.|.+.  +-..|.|.|+|+|...+|+|+|.+.|+|..|...
T Consensus       476 ~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G  555 (581)
T PLN02222        476 YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG  555 (581)
T ss_pred             CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCc
Confidence            456899999999763    3689999999999999999999554  3479999999999988999999999999998553

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.27  E-value=1.3e-06  Score=80.60  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ++++||||.|++++.++.||+..   .||.|||+|.|.|.....++|.|||+..- ..--+|..=|.|++|...
T Consensus        20 ~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vdk~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          20 SKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVEKNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             ccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEecCCcEEEEEEEeCCCC-eecceeeehhhHHHHHHH
Confidence            57799999999998888899874   78999999999998778999999998432 223568888999999765

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.25  E-value=1.2e-06  Score=63.25  Aligned_cols=30  Identities=63%  Similarity=1.381  Sum_probs=29.0

Q ss_pred             CCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        512 PPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       512 p~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      |+||++.++.+|++||+|+.|++++|++|+
T Consensus         1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201           1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence            789999999999999999999999999997

>KOG2059|consensus

Probab=98.22  E-value=1.9e-06  Score=100.79  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      -...||||.|.+|.+...+|.++-|+|-|-|-|+|.|.+-.. ..|.|-|||.| ++.|+.||.+.|+=.+|-... |. 
T Consensus        23 ~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~-   99 (800)
T KOG2059|consen   23 SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GK-   99 (800)
T ss_pred             CCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCC-CC-
Confidence            345799999999999899999999999999999999977654 68999999999 999999999999999886654 33 


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                       +.|+.|.--+++..+.|+++|.+..
T Consensus       100 -d~W~~L~~VD~dsEVQG~v~l~l~~  124 (800)
T KOG2059|consen  100 -DTWFSLQPVDPDSEVQGKVHLELAL  124 (800)
T ss_pred             -ccceeccccCCChhhceeEEEEEEe
Confidence             4688888888999999999888743

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.19  E-value=1.4e-06  Score=62.86  Aligned_cols=29  Identities=59%  Similarity=1.250  Sum_probs=16.5

Q ss_pred             CCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        375 PPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      |+||+...+.+|+.||||+.|++|+|++|
T Consensus         1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P   29 (31)
T cd00201           1 PPGWEERWDPDGRVYYYNHNTKETQWEDP   29 (31)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEeCCCC
Confidence            44555555555555555555555555555

>KOG0155|consensus

Probab=98.19  E-value=1.8e-06  Score=97.63  Aligned_cols=31  Identities=35%  Similarity=0.706  Sum_probs=29.0

Q ss_pred             CCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327        376 PGWEIRQDTYGRRYYVDHNTRSSSWERPQPL  406 (994)
Q Consensus       376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l  406 (994)
                      ++|.++..|+|..||+|..|..+||++|..|
T Consensus        12 s~wtef~ap~G~pyy~ns~t~~st~ekP~~l   42 (617)
T KOG0155|consen   12 SGWTEFKAPDGIPYYWNSETLESTWEKPSFL   42 (617)
T ss_pred             CCCccCCCCCCcceecccccccchhhCchhh
Confidence            8999999999999999999999999999544

>KOG1031|consensus

Probab=98.10  E-value=5.8e-06  Score=93.92  Aligned_cols=99  Identities=20%  Similarity=0.298  Sum_probs=74.9

Q ss_pred             CCCCeEEEeeccCCceeeeeecCCCCCCcc-eEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC-
Q psy16327        149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWN-EEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN-  222 (994)
Q Consensus       149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wn-e~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~-  222 (994)
                      ..|-||+|++ +..++||.|..|+|||.|| +.|.|.|.+    ...|.|+|.|||++..+|-||.+.|+|..+.-... 
T Consensus        24 ~tdafveik~-~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aa  102 (1169)
T KOG1031|consen   24 LTDAFVEIKF-ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAA  102 (1169)
T ss_pred             cchheeEEEe-cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHH
Confidence            3589999999 5559999999999999998 778888874    45999999999999999999999999988874321 


Q ss_pred             ----CccceEEEEeecCCCCCCCCCeEEEe
Q psy16327        223 ----GKCEHLEITLDLMNDSRVSPPLMSVE  248 (994)
Q Consensus       223 ----~~~~~~~~~l~L~~~~~~~~G~l~v~  248 (994)
                          |+-..+.-+.++-+.-....|||.|.
T Consensus       103 qavhgkgtvisgw~pifdtihgirgeinvi  132 (1169)
T KOG1031|consen  103 QAVHGKGTVISGWFPIFDTIHGIRGEINVI  132 (1169)
T ss_pred             hhhcCCceEEeeeeecceecccccceeEEE
Confidence                11112223445555445566775554

>KOG1028|consensus

Probab=98.08  E-value=3.3e-06  Score=98.51  Aligned_cols=68  Identities=28%  Similarity=0.340  Sum_probs=57.0

Q ss_pred             CCCCCeEEEeec--c--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        148 LKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       148 ~~~dPyv~v~~~--g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      ..+||||++.+-  +  ..++||.++++++||+|||.|.|.|.+    ...|.|+|||+|+++++++||.+.+...
T Consensus       317 ~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~  392 (421)
T KOG1028|consen  317 GLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD  392 (421)
T ss_pred             CCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC
Confidence            458999999872  3  236889999999999999999997764    3589999999999999999998765554

>PLN02228 Phosphoinositide phospholipase C

Probab=98.06  E-value=1.3e-05  Score=95.33  Aligned_cols=96  Identities=14%  Similarity=0.243  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCc-ceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKW-NEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~W-ne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +..+||||+|.+.|.    ..+||++++++.||.| ||+|.|.+.  +-..|.|.|+|+|.+..|+|+|.+.|+|..|..
T Consensus       455 ~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~  534 (567)
T PLN02228        455 YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKS  534 (567)
T ss_pred             CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence            445899999999773    3579999999999999 999999655  346999999999999999999999999999854


Q ss_pred             ccCCccceEEEEeecCCCCCCC--CCeEEEecC
Q psy16327        220 HYNGKCEHLEITLDLMNDSRVS--PPLMSVEMP  250 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~~--~G~l~v~~~  250 (994)
                      ..        -.+.|.+..+..  ...|.|.+.
T Consensus       535 GY--------R~VpL~~~~G~~l~~atLfv~~~  559 (567)
T PLN02228        535 GV--------RAVRLHDRAGKAYKNTRLLVSFA  559 (567)
T ss_pred             Ce--------eEEEccCCCCCCCCCeEEEEEEE
Confidence            31        234565544432  335666654

>PLN02270 phospholipase D alpha

Probab=98.06  E-value=1.2e-05  Score=98.02  Aligned_cols=98  Identities=16%  Similarity=0.292  Sum_probs=78.6

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCC-CCCCcceEEEEEe-cCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNT-YQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~t-lnP~Wne~f~~~v-~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      ..+||||.|.+++....+|.|+++. .||+|||.|.+.+ ...+.|.|+|.|.|-++.. +||.+.|++.+|+...   .
T Consensus        45 ~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~---~  120 (808)
T PLN02270         45 GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGE---E  120 (808)
T ss_pred             CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCce-EEEEEEEEHHHhcCCC---c
Confidence            4689999999998888999999885 6999999999966 4678999999999988776 9999999999998752   2


Q ss_pred             ceEEEEeecCCCCCC-C-CC-eEEEecCC
Q psy16327        226 EHLEITLDLMNDSRV-S-PP-LMSVEMPP  251 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~-~-~G-~l~v~~~~  251 (994)
                        ++-++++.+++++ . .| +|.|.+..
T Consensus       121 --i~~~~~~~~~~~~p~~~~~~~~~~~~f  147 (808)
T PLN02270        121 --VDRWVEILDNDKNPIHGGSKIHVKLQY  147 (808)
T ss_pred             --cccEEeccCCCCCcCCCCCEEEEEEEE
Confidence              3355677766553 2 33 67776654

>KOG1328|consensus

Probab=98.04  E-value=2.2e-06  Score=99.92  Aligned_cols=72  Identities=26%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             CCCCCeEEEeeccC------CceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        148 LKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       148 ~~~dPyv~v~~~g~------~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      ..+||||+|.+.-.      ...||+|+++||||+++|.|+|.|.+      ...|.|+|+|||-++.+||-|+|-+.|+
T Consensus       966 GlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg 1045 (1103)
T KOG1328|consen  966 GLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELG 1045 (1103)
T ss_pred             CCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhC
Confidence            56899999998542      24799999999999999999998874      3489999999999999999999999998


Q ss_pred             hhhc
Q psy16327        216 GVLA  219 (994)
Q Consensus       216 ~~~~  219 (994)
                      +|--
T Consensus      1046 ~vpG 1049 (1103)
T KOG1328|consen 1046 DVPG 1049 (1103)
T ss_pred             CCCC
Confidence            8853

>KOG0169|consensus

Probab=97.95  E-value=9.7e-06  Score=96.71  Aligned_cols=73  Identities=23%  Similarity=0.381  Sum_probs=62.4

Q ss_pred             CCCCCeEEEeeccC----Cceeee-eecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVDYK----NPKTTR-VVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~g~----~~~kT~-v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ...||||.|.+-|.    ...||+ |..++.||.|+|+|+|.++  +-..|.|.|+|+|...+|||+|...|+++++...
T Consensus       639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G  718 (746)
T KOG0169|consen  639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQG  718 (746)
T ss_pred             ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence            44799999998773    257898 6678889999999999776  4569999999999999999999999999999653

>KOG1328|consensus

Probab=97.85  E-value=6.4e-06  Score=96.16  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             ceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCC------------------------------------CC
Q psy16327        163 PKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR------------------------------------RD  204 (994)
Q Consensus       163 ~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~------------------------------------~d  204 (994)
                      .|-|+|+++||||+|||.|.|.|.+  .+.+.+.|||||.-.                                    .|
T Consensus       178 Ikatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD  257 (1103)
T KOG1328|consen  178 IKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD  257 (1103)
T ss_pred             hhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence            4679999999999999999998875  458999999998521                                    17


Q ss_pred             cccceEEeehhhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327        205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       205 ~~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      ||||-++|+|++|-..   ++ +.|++|+...+...+.|.+.+.+
T Consensus       258 DFLGciNipl~EiP~~---Gl-d~WFkLepRS~~S~VqG~~~Lkl  298 (1103)
T KOG1328|consen  258 DFLGCINIPLAEIPPD---GL-DQWFKLEPRSDKSKVQGQVKLKL  298 (1103)
T ss_pred             ccccccccchhcCCcc---hH-HHHhccCcccccccccceEEEEE
Confidence            9999999999999654   22 35788888888888999655554

>KOG2059|consensus

Probab=97.77  E-value=4.4e-05  Score=89.84  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=101.8

Q ss_pred             CCCHHHHH-HHHcCCCccChhhhhhcceeCCc------cCCCccee-------eEEEEecCccccccccccccCcC---C
Q psy16327         85 YFDERELE-LILCGMQEIDVEDWQRNAIYRHY------TRNSKQTT-------RVVKNTYQPKWNEEFTVGGQGGG---L  147 (994)
Q Consensus        85 ~f~~~EL~-~ll~G~~~id~~~l~~~t~y~gy------~~~s~~i~-------~fw~~f~~~~e~~~F~~~~~~~~---f  147 (994)
                      +++.+ |. -.+.|.--|.-++|..+-..+++      ++|+. |+       .+|+..=..--+.. ...-+ .+   +
T Consensus        72 v~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE-VQG~v~l~l~~~e~~~~~~~~c~-~L~~r-~~~P~~  147 (800)
T KOG2059|consen   72 VWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE-VQGKVHLELALTEAIQSSGLVCH-VLKTR-QGLPII  147 (800)
T ss_pred             Eeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChh-hceeEEEEEEeccccCCCcchhh-hhhhc-ccCcee
Confidence            56666 54 56677777888888877755542      44443 33       23332100000000 00000 01   1


Q ss_pred             -CCCCCeEEEeeccC---CceeeeeecCCCCCCcceEEEEEecCC-----------------CeEEEEEec-CCCCCCCc
Q psy16327        148 -LKPNPYIELYVDYK---NPKTTRVVKNTYQPKWNEEFTVLVSPY-----------------SIILFRLLD-HRTFRRDC  205 (994)
Q Consensus       148 -~~~dPyv~v~~~g~---~~~kT~v~k~tlnP~Wne~f~~~v~~~-----------------~~l~~~V~D-~d~~~~d~  205 (994)
                       ...|||++|+..|.   +.++|+++|||.||.|||.|.|.+...                 ..|.+.+|+ ++...+++
T Consensus       148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~  227 (800)
T KOG2059|consen  148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV  227 (800)
T ss_pred             CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence             23899999999763   236999999999999999999988754                 267889999 67777799


Q ss_pred             ccceEEeehhhhhcccCCccceEEEEeecCCCCC-----CCCCeEEEecCC
Q psy16327        206 TIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSR-----VSPPLMSVEMPP  251 (994)
Q Consensus       206 ~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~-----~~~G~l~v~~~~  251 (994)
                      |||++.|++..+...   .-..-|+.|+......     ...|.+.|.+.+
T Consensus       228 FlGevrv~v~~~~~~---s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y  275 (800)
T KOG2059|consen  228 FLGEVRVPVDVLRQK---SSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY  275 (800)
T ss_pred             hceeEEeehhhhhhc---cCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence            999999999888632   1234577777763222     345667777654

>PLN02964 phosphatidylserine decarboxylase

Probab=97.48  E-value=9.2e-05  Score=89.61  Aligned_cols=71  Identities=13%  Similarity=0.301  Sum_probs=62.3

Q ss_pred             CCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCC--eEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS--IILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       150 ~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~--~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      .|||..+..-|+|+.||...|+|+||+|||...|.|.++.  ...|.|||++++++++++|.+.++|.++...
T Consensus        68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964         68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence            4898765555999999999999999999999999887653  6799999999999999999999999887654

>KOG1264|consensus

Probab=97.46  E-value=0.00025  Score=84.10  Aligned_cols=70  Identities=21%  Similarity=0.394  Sum_probs=59.0

Q ss_pred             CCCeEEEeecc-----CCceeeeeecCCCCCCcc-eEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        150 PNPYIELYVDY-----KNPKTTRVVKNTYQPKWN-EEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       150 ~dPyv~v~~~g-----~~~~kT~v~k~tlnP~Wn-e~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      .-|||+|.+=|     ...++|.|+.+.|||+|| |.|+|.|.+  -..|.|.|+|.|.|....|||.|..+|..|..
T Consensus      1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence            45999999855     334566788999999999 999997764  35899999999999988899999999988843

>KOG3259|consensus

Probab=97.46  E-value=5.9e-05  Score=72.42  Aligned_cols=33  Identities=45%  Similarity=1.063  Sum_probs=24.6

Q ss_pred             CCCCCceeeeCC-CCCeEEEeCCCCcccccCCch
Q psy16327        405 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       405 ~lp~gW~~~~~~-~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      .||+||+++++. .||.||+|+.|++++|++|..
T Consensus         6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~   39 (163)
T KOG3259|consen    6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG   39 (163)
T ss_pred             cCCchhheeccccCCCcceeccccchhhccCCCc
Confidence            477777777776 677777777777777777763

>KOG3259|consensus

Probab=97.40  E-value=7.7e-05  Score=71.65  Aligned_cols=37  Identities=41%  Similarity=0.942  Sum_probs=32.7

Q ss_pred             CCCCCCceEEeCCC-CCeEEEeCCCCceeccCCChhhh
Q psy16327        509 QPLPPGWELRRDPR-GRVYYVDHNTRSTTWQRPNSERL  545 (994)
Q Consensus       509 ~~lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P~~~~~  545 (994)
                      ..||+||+.+.+.. ||+||+|+.|++.+|+.|.....
T Consensus         5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~   42 (163)
T KOG3259|consen    5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSK   42 (163)
T ss_pred             ccCCchhheeccccCCCcceeccccchhhccCCCcccc
Confidence            36999999999765 99999999999999999986543

>KOG0155|consensus

Probab=96.98  E-value=0.00081  Score=76.71  Aligned_cols=32  Identities=34%  Similarity=0.815  Sum_probs=29.8

Q ss_pred             CCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327        406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       406 lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      .|++|.+.-.++|..||+|..|...+|++|..
T Consensus        10 aps~wtef~ap~G~pyy~ns~t~~st~ekP~~   41 (617)
T KOG0155|consen   10 APSGWTEFKAPDGIPYYWNSETLESTWEKPSF   41 (617)
T ss_pred             CCCCCccCCCCCCcceecccccccchhhCchh
Confidence            45899999999999999999999999999974

>PLN02352 phospholipase D epsilon

Probab=96.94  E-value=0.0022  Score=78.59  Aligned_cols=89  Identities=17%  Similarity=0.329  Sum_probs=66.7

Q ss_pred             CCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceE
Q psy16327        151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHL  228 (994)
Q Consensus       151 dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~  228 (994)
                      ||||.|.+++....+|   ++.-||+|||.|.+.+- .. +.+.|+|.|     +-.+||.+.|++.+|+...   . .+
T Consensus        37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~---~-~~  104 (758)
T PLN02352         37 ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEA---S-FI  104 (758)
T ss_pred             CceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCC---c-cc
Confidence            9999999988777788   55569999999999664 45 689999999     3569999999999998742   1 13


Q ss_pred             EEEeecCCCCC-CCCC-eEEEecCC
Q psy16327        229 EITLDLMNDSR-VSPP-LMSVEMPP  251 (994)
Q Consensus       229 ~~~l~L~~~~~-~~~G-~l~v~~~~  251 (994)
                      +-++++.+.++ ...| +|.|.+..
T Consensus       105 ~~~~~~~~~~~~p~~~~~~~~~~~~  129 (758)
T PLN02352        105 NGFFPLIMENGKPNPELKLRFMLWF  129 (758)
T ss_pred             ceEEEcccCCCCCCCCCEEEEEEEE
Confidence            35566766554 3344 66666644

>KOG0905|consensus

Probab=96.88  E-value=0.00056  Score=84.31  Aligned_cols=70  Identities=20%  Similarity=0.373  Sum_probs=59.7

Q ss_pred             CCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-----ecCCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        149 KPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-----VSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       149 ~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-----v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      -|||||+..+--    ..++||||+.||.||.+||.+...     +-.+..|.+.||.++.+..+.|||.+.|+|.++-
T Consensus      1544 ~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1544 DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred             CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence            489999999842    347899999999999999988764     1234699999999999999999999999999873

>KOG1013|consensus

Probab=96.84  E-value=0.00088  Score=73.12  Aligned_cols=67  Identities=24%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCCC----eEEEEEecCCCCCCCcccceEEeeh
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYS----IILFRLLDHRTFRRDCTIGEKRLNI  214 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~~----~l~~~V~D~d~~~~d~~lG~~~i~l  214 (994)
                      ..+||||.+.+.-    ..++||.+.|+|+||++|++|.+.+.+.+    .+.|.|||++..+..|++|-...-+
T Consensus       252 g~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  252 GYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             CCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence            4589999988742    33689999999999999999999888765    8899999999998999998865433

>KOG3837|consensus

Probab=95.96  E-value=0.013  Score=65.70  Aligned_cols=88  Identities=19%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             ccCCceeeeeecCCCCCCcceEEEEEecC-------------CCeEEEEEecCCCC-CCCcccceEEeehhhhhcccCCc
Q psy16327        159 DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------------YSIILFRLLDHRTF-RRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       159 ~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-------------~~~l~~~V~D~d~~-~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      |-.++.||.|||.|..|.++|.|.+++..             .--+.|+||.+--| ++|.|+|.+.|+|.-|-..    
T Consensus       401 D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~----  476 (523)
T KOG3837|consen  401 DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENM----  476 (523)
T ss_pred             cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcc----
Confidence            45668899999999999999999998875             12688999997765 6899999999999876332    


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      + .+..+++|++..+.+.|+|-|.+..
T Consensus       477 c-ei~e~~~l~DGRK~vGGkLevKvRi  502 (523)
T KOG3837|consen  477 C-EICEYLPLKDGRKAVGGKLEVKVRI  502 (523)
T ss_pred             c-chhhceeccccccccCCeeEEEEEE
Confidence            2 2346789999999999988777643

>KOG1326|consensus

Probab=95.50  E-value=0.0051  Score=75.50  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             CCCCCCeEEEeeccCC-ceeeeeecCCCCCCcceEEEEEe--cCCCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLV--SPYSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~-~~kT~v~k~tlnP~Wne~f~~~v--~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      -.+.|||+.|.++++. .-+..-+.+||||++.+.|++..  .-...|.+.|||+|.+.+|+.+|+..|+|..
T Consensus       631 ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  631 NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence            4678999999996542 25678999999999999998844  3456899999999999999999999988753

>KOG1011|consensus

Probab=94.87  E-value=0.053  Score=63.54  Aligned_cols=69  Identities=25%  Similarity=0.365  Sum_probs=58.0

Q ss_pred             CeEEEeecc------CCceeeeeecCCCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        152 PYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       152 Pyv~v~~~g------~~~~kT~v~k~tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      |||+|.+-|      +.+..||.+.++..|++||+|.|.+...     -.|.|.|.|+---+.|..+|.+.+.|.++.+.
T Consensus      1147 PFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~k 1226 (1283)
T KOG1011|consen 1147 PFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADK 1226 (1283)
T ss_pred             cceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhc
Confidence            899999866      2234478888888999999999988643     28999999998788899999999999999776

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=94.75  E-value=0.074  Score=51.22  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=59.2

Q ss_pred             CCCCeEEEee---ccCCceeeeeecCCCCCCcceEEEEEec-----------------CCCeEEEEEecCCCC-------
Q psy16327        149 KPNPYIELYV---DYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTF-------  201 (994)
Q Consensus       149 ~~dPyv~v~~---~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----------------~~~~l~~~V~D~d~~-------  201 (994)
                      .-++||++.+   .++..++|.++-++.-|.+|-.++|...                 +.+.+.|+||....-       
T Consensus        32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            4579999884   4555899999999999999999998554                 245899999986432       


Q ss_pred             ---CCCcccceEEeehhhhhcccCC
Q psy16327        202 ---RRDCTIGEKRLNIYGVLAHYNG  223 (994)
Q Consensus       202 ---~~d~~lG~~~i~l~~~~~~~~~  223 (994)
                         .+|-+||.++|++.+++..-+|
T Consensus       112 ~~~~~DilLG~v~IPl~~Ll~~rsG  136 (143)
T cd08683         112 IETSGDILLGTVKIPLRDLLTKRSG  136 (143)
T ss_pred             cCcCCcEEEEEEEeeHHHHhhcccC
Confidence               2456789999999999887554

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326|consensus

Probab=94.40  E-value=0.028  Score=69.28  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEE-ec----------CCCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVL-VS----------PYSIILFRLLDHRTFRRDCTIGEKRLNIY  215 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~-v~----------~~~~l~~~V~D~d~~~~d~~lG~~~i~l~  215 (994)
                      -.+|||+.|..-|+ .++|.++++||||.||...+|. |.          +--.+.|.|||.|+..+++|+|.......
T Consensus       225 ~~sdp~a~v~f~~q-s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~  302 (1105)
T KOG1326|consen  225 DESDPDAAVEFCGQ-SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPY  302 (1105)
T ss_pred             cCCCchhhhhcccc-cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceE
Confidence            45899999888555 8999999999999999998882 11          12378899999999999999999875554

>KOG1327|consensus

Probab=92.95  E-value=0.24  Score=58.51  Aligned_cols=74  Identities=26%  Similarity=0.381  Sum_probs=58.2

Q ss_pred             cCCCCCCCeEEEee---cc--CCceeeeeecCCCCCCcceEEEEEe------cCCCeEEEEEecCCCCCCCcccceEEee
Q psy16327        145 GGLLKPNPYIELYV---DY--KNPKTTRVVKNTYQPKWNEEFTVLV------SPYSIILFRLLDHRTFRRDCTIGEKRLN  213 (994)
Q Consensus       145 ~~f~~~dPyv~v~~---~g--~~~~kT~v~k~tlnP~Wne~f~~~v------~~~~~l~~~V~D~d~~~~d~~lG~~~i~  213 (994)
                      -.|.++|||.++.-   +|  ...++|.+++++|||.|-. |.+.+      .....+.+.|||++.-++++++|.+...
T Consensus       152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt  230 (529)
T KOG1327|consen  152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT  230 (529)
T ss_pred             cccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence            45789999987553   23  2358999999999999986 23322      1346888999999999999999999999


Q ss_pred             hhhhhc
Q psy16327        214 IYGVLA  219 (994)
Q Consensus       214 l~~~~~  219 (994)
                      ++++..
T Consensus       231 ~~~~~~  236 (529)
T KOG1327|consen  231 LSELQE  236 (529)
T ss_pred             HHHhcc
Confidence            999865

>KOG2060|consensus

Probab=92.85  E-value=0.053  Score=60.60  Aligned_cols=78  Identities=15%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             ccccccCcCCCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEec-CCCCCCCcccceEE
Q psy16327        138 FTVGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLD-HRTFRRDCTIGEKR  211 (994)
Q Consensus       138 F~~~~~~~~f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D-~d~~~~d~~lG~~~  211 (994)
                      +.+...+|.  .++|||+|.+-+    ..++||+...||++|..-....|.-.+. ..|.+.||. +-++-.+.|||.++
T Consensus       281 l~~k~~~k~--~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aq  358 (405)
T KOG2060|consen  281 LVVKPGSKS--LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQ  358 (405)
T ss_pred             ccccCCccc--ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHH
Confidence            344444443  789999999843    3378999999999999988888877754 699999996 77777889999999


Q ss_pred             eehhhh
Q psy16327        212 LNIYGV  217 (994)
Q Consensus       212 i~l~~~  217 (994)
                      |-+.++
T Consensus       359 i~l~eL  364 (405)
T KOG2060|consen  359 IMLDEL  364 (405)
T ss_pred             HHhhhh
Confidence            888877

>KOG1013|consensus

Probab=92.64  E-value=0.036  Score=60.90  Aligned_cols=103  Identities=16%  Similarity=0.206  Sum_probs=70.1

Q ss_pred             CCCCCeEEEeec-c---CCceeeeeecCCCCCCcceEEEE-EecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        148 LKPNPYIELYVD-Y---KNPKTTRVVKNTYQPKWNEEFTV-LVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       148 ~~~dPyv~v~~~-g---~~~~kT~v~k~tlnP~Wne~f~~-~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...|||+++.+. |   -.+.+|++..+++||.|||.... .++..    .++.+.|-|.+.+..++++|+..|.+..+-
T Consensus       112 ~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~  191 (362)
T KOG1013|consen  112 GLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLK  191 (362)
T ss_pred             hhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccC
Confidence            346999998874 2   22467889999999999997776 33322    277789999999999999999998888774


Q ss_pred             cccCCccceEEEEeecC--CCC---CCCCCeEEEecCC
Q psy16327        219 AHYNGKCEHLEITLDLM--NDS---RVSPPLMSVEMPP  251 (994)
Q Consensus       219 ~~~~~~~~~~~~~l~L~--~~~---~~~~G~l~v~~~~  251 (994)
                      .. .++....++...|.  ...   ....|++.+++.+
T Consensus       192 p~-q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~  228 (362)
T KOG1013|consen  192 PL-QRKSFNICLEKSLPSERADRDEDEERGAILISLAY  228 (362)
T ss_pred             hh-hcchhhhhhhccCCcccccccchhhccceeeeecc
Confidence            43 23443433333333  111   1346777777654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=91.04  E-value=0.1  Score=46.82  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             CCeEE--EeeccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        151 NPYIE--LYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       151 dPyv~--v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      .-|++  +++..--..||++.....||+++|+|.|.+.-    ...|.|.|+.+  .++...||.+.+.+.++
T Consensus        22 ~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RKe~iG~~sL~l~s~   92 (103)
T cd08684          22 TIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRKRTIGECSLSLRTL   92 (103)
T ss_pred             eeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCccceeeEEEeecccC
Confidence            34543  55543336899999999999999999997763    34899999994  67788999999988766

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=88.84  E-value=1  Score=45.80  Aligned_cols=69  Identities=19%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             CCCCeEEEee--ccCC---ceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        149 KPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       149 ~~dPyv~v~~--~g~~---~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      .+|=||.+.|  +|+.   ...|+.+.-+..+.|||.++|.+.     -.+.|+|.|||.+.-++...||.++++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3566776654  4432   234544444556899999999765     2569999999987655667899998888654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1327|consensus

Probab=84.88  E-value=2  Score=50.97  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             ceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCC----CCCCcccceEEeehhhhhcccCCccceEEEEeecCC
Q psy16327        163 PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT----FRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMN  236 (994)
Q Consensus       163 ~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~----~~~d~~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~  236 (994)
                      ..+|.++.+.+||.|-+.|.+...  ....|.|.|+|-+.    +...||||++...+++++......     ..+.++.
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~  116 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP  116 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence            458999999999999998888443  45689999999765    455699999999999998653211     2233333


Q ss_pred             CCCCCCCeEEEecCC
Q psy16327        237 DSRVSPPLMSVEMPP  251 (994)
Q Consensus       237 ~~~~~~G~l~v~~~~  251 (994)
                      ......|.|.+....
T Consensus       117 ~~~~~~g~iti~aee  131 (529)
T KOG1327|consen  117 GKNAGSGTITISAEE  131 (529)
T ss_pred             CccCCcccEEEEeec
Confidence            344567888887754

>KOG1924|consensus

Probab=83.36  E-value=3.8  Score=50.07  Aligned_cols=12  Identities=25%  Similarity=0.620  Sum_probs=8.3

Q ss_pred             HHHHHhhccccC
Q psy16327         68 KAFLDGFNEVVP   79 (994)
Q Consensus        68 ~af~~Gf~~v~p   79 (994)
                      +++|.|+++++|
T Consensus       331 E~mr~gL~~~l~  342 (1102)
T KOG1924|consen  331 EFMRDGLHKYLP  342 (1102)
T ss_pred             HHHHHhHHHHHH
Confidence            566777777765

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=83.12  E-value=7  Score=39.46  Aligned_cols=94  Identities=19%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             EEEeeccCCceeeeeecCCCCCCcceEEEEEecCC---------------CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        154 IELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY---------------SIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       154 v~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~---------------~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      +.+.+ +.|.++|+-+.-+.+|.++|.|-|.+...               ..|++.|.--|+.....++|+-.++=..++
T Consensus        38 l~l~f-~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL  116 (156)
T PF15627_consen   38 LHLHF-RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL  116 (156)
T ss_pred             EEEEe-cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence            44555 44699999999999999999999976532               378888999888877789999999999999


Q ss_pred             cccCCccceEEEEeecCCCC---CCCCCeEEEecCC
Q psy16327        219 AHYNGKCEHLEITLDLMNDS---RVSPPLMSVEMPP  251 (994)
Q Consensus       219 ~~~~~~~~~~~~~l~L~~~~---~~~~G~l~v~~~~  251 (994)
                      ...++..   .++++|.+.+   +...|.|.|.++.
T Consensus       117 ~s~~~~~---~~~vEL~G~~~e~kv~~GiL~l~lEL  149 (156)
T PF15627_consen  117 CSGNGST---SFTVELCGVGPESKVPVGILDLRLEL  149 (156)
T ss_pred             ccCCCcc---ceeEEEeccCCCCccceeEEEEEEEe
Confidence            9877643   3566776544   4578987777754

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=81.06  E-value=3.9  Score=37.27  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=50.3

Q ss_pred             CCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       150 ~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      .+-.+++++|+.....|.-... .+..||+.|++.+..+..|+|.||=+|-   ..+=|.+-++|+|.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            4567889998765666654333 4899999999999999999999998753   35678888899884

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	994
1nd7_A	374	Conformational Flexibility Underlies Ubiquitin Liga		5e-96
1nd7_A	374	Conformational Flexibility Underlies Ubiquitin Liga		2e-18
3tug_A	398	Crystal Structure Of The Hect Domain Of Itch E3 Ubi		5e-88
3tug_A	398	Crystal Structure Of The Hect Domain Of Itch E3 Ubi		2e-20
3olm_A	429	Structure And Function Of A Ubiquitin Binding Site		2e-70
3olm_A	429	Structure And Function Of A Ubiquitin Binding Site		9e-13
1zvd_A	380	Regulation Of Smurf2 Ubiquitin Ligase Activity By A		5e-55
1zvd_A	380	Regulation Of Smurf2 Ubiquitin Ligase Activity By A		8e-09
2xbb_A	386	Nedd4 Hect:ub Complex Length = 386		2e-50
2xbb_A	386	Nedd4 Hect:ub Complex Length = 386		7e-10
3jvz_C	385	E2~ubiquitin-Hect Length = 385		5e-47
3jvz_C	385	E2~ubiquitin-Hect Length = 385		7e-08
3jw0_C	385	E2~ubiquitin-Hect Length = 385		5e-47
3jw0_C	385	E2~ubiquitin-Hect Length = 385		8e-08
2oni_A	392	Catalytic Domain Of The Human Nedd4-Like E3 Ligase		4e-45
2oni_A	392	Catalytic Domain Of The Human Nedd4-Like E3 Ligase		2e-07
3h1d_A	405	Structure Of The Huwe1 Hect Domain Length = 405		7e-41
3h1d_A	405	Structure Of The Huwe1 Hect Domain Length = 405		3e-06
3g1n_A	388	Catalytic Domain Of The Human E3 Ubiquitin-Protein		1e-40
3g1n_A	388	Catalytic Domain Of The Human E3 Ubiquitin-Protein		4e-06
1tk7_A	88	Nmr Structure Of Ww Domains (Ww3-4) From Suppressor		9e-32
1c4z_A	358	Structure Of E6ap: Insights Into Ubiquitination Pat		7e-20
1c4z_A	358	Structure Of E6ap: Insights Into Ubiquitination Pat		9e-05
2kxq_A	90	Solution Structure Of Smurf2 Ww2 And Ww3 Bound To S		2e-13
2nq3_A	173	Crystal Structure Of The C2 Domain Of Human Itchy H		3e-12
2jmf_A	53	Solution Structure Of The Su(Dx) Ww4- Notch Py Pept		8e-12
2op7_A	39	Ww4 Length = 39		4e-10
2jo9_A	37	Mouse Itch 3rd Ww Domain Complex With The Epstein-B		2e-08
2jo9_A	37	Mouse Itch 3rd Ww Domain Complex With The Epstein-B		4e-05
1i5h_W	50	Solution Structure Of The Rnedd4 Wwiii Domain-Renac		7e-08
1i5h_W	50	Solution Structure Of The Rnedd4 Wwiii Domain-Renac		3e-04
2joc_A	37	Mouse Itch 3rd Domain Phosphorylated In T30 Length		9e-08
2joc_A	37	Mouse Itch 3rd Domain Phosphorylated In T30 Length		1e-04
2kyk_A	39	The Sandwich Region Between Two Lmp2a Py Motif Regu		1e-07
2kyk_A	39	The Sandwich Region Between Two Lmp2a Py Motif Regu		1e-07
2kyk_A	39	The Sandwich Region Between Two Lmp2a Py Motif Regu		3e-05
2l4j_A	46	Yap Ww2 Length = 46		3e-07
2djy_A	42	Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Pe		1e-06
2ltz_A	37	Smurf2 Ww3 Domain In Complex With A Smad7 Derived P		1e-06
2lb1_A	35	Structure Of The Second Domain Of Human Smurf1 In C		2e-06
2ltx_A	35	Smurf1 Ww2 Domain In Complex With A Smad7 Derived P		3e-06
2law_A	38	Structure Of The Second Ww Domain From Human Yap In		3e-06
2law_A	38	Structure Of The Second Ww Domain From Human Yap In		5e-04
2f21_A	162	Human Pin1 Fip Mutant Length = 162		3e-06
2f21_A	162	Human Pin1 Fip Mutant Length = 162		3e-06
2f21_A	162	Human Pin1 Fip Mutant Length = 162		7e-06
2ltv_A	36	Yap Ww2 In Complex With A Smad7 Derived Peptide Len		4e-06
2ysf_A	40	Solution Structure Of The Fourth Ww Domain From The		5e-06
2lb2_A	35	Structure Of The Second Domain Of Human Nedd4l In C		5e-06
2lb2_A	35	Structure Of The Second Domain Of Human Nedd4l In C		5e-06
2lb2_A	35	Structure Of The Second Domain Of Human Nedd4l In C		1e-04
1wr4_A	36	Solution Structure Of The Second Ww Domain Of Nedd4		7e-06
1wr4_A	36	Solution Structure Of The Second Ww Domain Of Nedd4		7e-06
1wr4_A	36	Solution Structure Of The Second Ww Domain Of Nedd4		2e-04
2ysd_A	57	Solution Structure Of The First Ww Domain From The		8e-06
1wr7_A	41	Solution Structure Of The Third Ww Domain Of Nedd4-		9e-06
1wr7_A	41	Solution Structure Of The Third Ww Domain Of Nedd4-		9e-06
2lty_A	34	Nedd4l Ww2 Domain In Complex With A Smad7 Derived P		9e-06
2lty_A	34	Nedd4l Ww2 Domain In Complex With A Smad7 Derived P		9e-06
2lty_A	34	Nedd4l Ww2 Domain In Complex With A Smad7 Derived P		2e-04
2kpz_A	49	Human Nedd4 3rd Ww Domain Complex With The Human T-		1e-05
1wr3_A	36	Solution Structure Of The First Ww Domain Of Nedd4-		2e-05
1wr3_A	36	Solution Structure Of The First Ww Domain Of Nedd4-		2e-05
1wr3_A	36	Solution Structure Of The First Ww Domain Of Nedd4-		7e-04
2dmv_A	43	Solution Structure Of The Second Ww Domain Of Itchy		3e-05
2dmv_A	43	Solution Structure Of The Second Ww Domain Of Itchy		3e-05
2laj_A	44	Third Ww Domain Of Human Nedd4l In Complex With Dou		3e-05
2laj_A	44	Third Ww Domain Of Human Nedd4l In Complex With Dou		3e-05
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		3e-05
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		3e-05
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		5e-04
3l4h_A	109	Helical Box Domain And Second Ww Domain Of The Huma		4e-05
1o6w_A	75	Solution Structure Of The Prp40 Ww Domain Pair Of T		4e-05
1o6w_A	75	Solution Structure Of The Prp40 Ww Domain Pair Of T		1e-04
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		5e-05
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		5e-05
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		5e-04
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		8e-04
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		8e-04
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		7e-05
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		8e-04
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		7e-05
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		7e-05
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		7e-04
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		7e-05
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		7e-05
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		8e-04
1ymz_A	43	Cc45, An Artificial Ww Domain Designed Using Statis		8e-05
1ymz_A	43	Cc45, An Artificial Ww Domain Designed Using Statis		8e-05
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-04
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-04
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		3e-04
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		3e-04
2ysb_A	49	Solution Structure Of The First Ww Domain From The		3e-04
2ysb_A	49	Solution Structure Of The First Ww Domain From The		3e-04
1k9q_A	40	Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2		4e-04
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		4e-04
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		4e-04
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		4e-04
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		4e-04
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		4e-04
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		4e-04
1jmq_A	46	Yap65 (L30k Mutant) Ww Domain In Complex With Gtppp		4e-04
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		4e-04
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		4e-04
1k5r_A	41	Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid		5e-04
2lax_A	40	Structure Of First Ww Domain Of Human Yap In Comple		5e-04
2lay_A	36	Structure Of The First Ww Domain Of Human Yap In Co		6e-04

>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374

Iteration: 1
 Score =  349 bits (895), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 159/212 (75%), Positives = 184/212 (86%)
Query: 693 SFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEG 752
            FRWKL+ FRYLC  N LPSH+KI V+RQTLFEDS+ Q+M L  Y+LRRRLY+IFRGEEG
Sbjct: 3   GFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEG 62
Query: 753 LDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIA 812
           LDYGG++REWFFLLSHEVLNPMYCLFEYA KNNY LQINPAS +NPDHL YF FIGRFIA
Sbjct: 63  LDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIA 122
Query: 813 MALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLS 872
           MAL+HG+FI +GF++PFYKRML+KKL +KD+ESID EFYNSL+WIRDNNI+ECGLE+Y S
Sbjct: 123 MALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFS 182
Query: 873 VDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           VD EILG+V  H+LK  G  I V EENK+EY+
Sbjct: 183 VDMEILGKVTSHDLKLGGSNILVTEENKDEYI 214

>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)
Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE 989
           +FCIEKVGKDTWLPRSHTCFNRLDLPPYKSY+Q+ EKL +AIEETE
Sbjct: 329 KFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374

>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398

Iteration: 1
 Score =  322 bits (826), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 181/218 (83%)
Query: 688 KAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIF 747
           + Y R F+ K+  FR+ C    +P HIKITV R+TLFEDS+ Q+M     +LRRRL++IF
Sbjct: 17  QGYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIF 76
Query: 748 RGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFI 807
            GEEGLDYGGV+REWFFLLSHEV NPMYCLFEYA K+NY LQINPASY+NPDHL YF+FI
Sbjct: 77  PGEEGLDYGGVAREWFFLLSHEVSNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFI 136
Query: 808 GRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGL 867
           GRFIAMAL+HG+FI +GF++PFYKR+LNK + +KD+ESIDPEFYNSL+W+++NNI+EC L
Sbjct: 137 GRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENNIEECDL 196
Query: 868 ELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMR 905
           E+Y SVD EILG++  H+LK NG  I V EENKEEY+R
Sbjct: 197 EMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIR 234

>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 48/51 (94%)
Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
           +FCIEKVGK+ WLPRSHTCFNRLDLPPYKSY+Q+ EKL +AIEETEGFGQE
Sbjct: 348 KFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE 398

>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429

Iteration: 1
 Score =  264 bits (675), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/275 (48%), Positives = 182/275 (66%), Gaps = 6/275 (2%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQF 701
           PLP GWE+R T     YFVDHNT++TT++DPR     DQ     VP+ Y+R FR K+  F
Sbjct: 8   PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQN----VPQ-YKRDFRRKVIYF 62
Query: 702 RYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSRE 761
           R      +LP    I V R+ +FED+Y ++MR    +L++RL I F GEEGLDYGGVSRE
Sbjct: 63  RSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSRE 122
Query: 762 WFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFI 821
           +FFLLSHE+ NP YCLFEY+  +NY++QINP S +NP+HL YFKFIGR + + ++H RF+
Sbjct: 123 FFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFL 182
Query: 822 YSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQV 881
            + F    YK ML KK+V++D+E +D E YNSL W+ +N+ID   L+L  S D E  G+V
Sbjct: 183 DAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDERFGEV 241
Query: 882 IHHELKENGDKIRVCEENKEEYMRWYGSGSSCERA 916
           +  +LK +G  I V + NK+EY+  Y      +R 
Sbjct: 242 VTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRV 276

>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
           RF IEK G+   LP+SHTCFNR+DLP Y  YD M +KL  A+EET GFGQE
Sbjct: 379 RFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 429

>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380

Iteration: 1
 Score =  213 bits (541), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 138/196 (70%), Gaps = 1/196 (0%)
Query: 712 SHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVL 771
            H +I V+R+ +FE+SY QV +    +L +RL I FRGEEGLDYGGV+REW +LLSHE L
Sbjct: 23  GHCRIEVSREEIFEESYRQVXKXRPKDLWKRLXIKFRGEEGLDYGGVAREWLYLLSHEXL 82
Query: 772 NPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYK 831
           NP Y LF+Y+  + Y+LQINP S VNP+HL YF F+GR    A++HG +I  GFT+PFYK
Sbjct: 83  NPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGGFTLPFYK 142
Query: 832 RMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGD 891
           ++L K + + D E +DP+ +NSLVWI +N+I    L+    V+    G++I HELK NG 
Sbjct: 143 QLLGKSITLDDXELVDPDLHNSLVWILENDITGV-LDHTFCVEHNAYGEIIQHELKPNGK 201
Query: 892 KIRVCEENKEEYMRWY 907
            I V EENK+EY+R Y
Sbjct: 202 SIPVNEENKKEYVRLY 217

>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 956 LPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
           LP++HTCFNR+D+PPY+SY+++ EKL  AIEET GF  E
Sbjct: 342 LPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380

>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386

Iteration: 1
 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 138/205 (67%), Gaps = 4/205 (1%)
Query: 702 RYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLP-AYELRRRLYIIFRGEEGLDYGGVSR 760
           R L   N +P+  ++ + R T+ EDSY ++M +  A  L+ RL+I F GE+GLDYGGV+R
Sbjct: 17  RKLKKQNDIPNKFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAR 76
Query: 761 EWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFIGRFIAMALYHGR 819
           EWFFL+S E+ NP Y LFEY+  +NY+LQINP S   N DHL YFKFIGR   MA+YHG+
Sbjct: 77  EWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGK 136
Query: 820 FIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILG 879
            +   F  PFYK ML+K + + D+ES+D E+YNSL WI +N  D   L+L   +D E+ G
Sbjct: 137 LLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILEN--DPTELDLRFIIDEELFG 194
Query: 880 QVIHHELKENGDKIRVCEENKEEYM 904
           Q   HELK  G +I V  +NK+EY+
Sbjct: 195 QTHQHELKNGGSEIVVTNKNKKEYI 219

>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGF 991
           F +E+ G    LPR+HTCFNRLDLPPY+S++++ +KL  AIE T+GF
Sbjct: 336 FTVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQGF 382

>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385

Iteration: 1
 Score =  186 bits (473), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 5/217 (2%)
Query: 691 ERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE-LRRRLYIIFR 748
           E  F+ K   FR  L     +P+  ++ + R  +FE+SY ++M +   + L+ RL+I F 
Sbjct: 4   EFEFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFE 63
Query: 749 GEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFI 807
            E+GLDYGGV+REWFFLLS E+ NP Y LFEY+  +NY+LQINP S   N DHL YF FI
Sbjct: 64  SEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFI 123
Query: 808 GRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGL 867
           GR   +A++HG+ +   F  PFYK ML K++ + D+ES+D E+YNSL WI +N  D   L
Sbjct: 124 GRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN--DPTEL 181
Query: 868 ELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           +L   +D E  GQ    +LK NG +I V  ENK EY+
Sbjct: 182 DLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYI 218

>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGF 991
           F IE+ G    LPR+HT FNRLDLPPY++++ + EKL  A+E  +GF
Sbjct: 335 FTIEQWGSPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQGF 381

>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385

Iteration: 1
 Score =  186 bits (472), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 5/217 (2%)
Query: 691 ERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE-LRRRLYIIFR 748
           E  F+ K   FR  L     +P+  ++ + R  +FE+SY ++M +   + L+ RL+I F 
Sbjct: 4   EFEFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFE 63
Query: 749 GEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFI 807
            E+GLDYGGV+REWFFLLS E+ NP Y LFEY+  +NY+LQINP S   N DHL YF FI
Sbjct: 64  SEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFI 123
Query: 808 GRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGL 867
           GR   +A++HG+ +   F  PFYK ML K++ + D+ES+D E+YNSL WI +N  D   L
Sbjct: 124 GRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN--DPTEL 181
Query: 868 ELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           +L   +D E  GQ    +LK NG +I V  ENK EY+
Sbjct: 182 DLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYI 218

>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGF 991
           F IE+ G    LPR+HT FNRLDLPPY++++ + EKL  A+E  +GF
Sbjct: 335 FTIEQWGSPEKLPRAHTSFNRLDLPPYETFEDLREKLLMAVENAQGF 381

>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392

Iteration: 1
 Score =  180 bits (456), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 133/216 (61%), Gaps = 5/216 (2%)
Query: 692 RSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE-LRRRLYIIFRG 749
           R F+ K   FR  L     +P+  +  + R  +FE+SY ++  +   + L+ RL+I F  
Sbjct: 20  REFKQKYDYFRKKLKKPADIPNRFEXKLHRNNIFEESYRRIXSVKRPDVLKARLWIEFES 79
Query: 750 EEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFIG 808
           E+GLDYGGV+REWFFLLS E  NP Y LFEY+  +NY+LQINP S   N DHL YF FIG
Sbjct: 80  EKGLDYGGVAREWFFLLSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIG 139
Query: 809 RFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLE 868
           R   +A++HG+ +   F  PFYK  L K++ + D ES+D E+YNSL WI +N  D   L+
Sbjct: 140 RVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWILEN--DPTELD 197
Query: 869 LYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYM 904
           L   +D E  GQ    +LK NG +I V  ENK EY+
Sbjct: 198 LXFCIDEENFGQTYQVDLKPNGSEIXVTNENKREYI 233

>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986
           F IE+ G    LPR+HTCFNRLDLPPY++++ + EKL  A+E
Sbjct: 350 FTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLXAVE 391

>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405

Iteration: 1
 Score =  166 bits (419), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 119/191 (62%)
Query: 714 IKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNP 773
           + + V R  +FEDSY ++ R    E++ RLYI+F GEEG D GG+ REW+ ++S E+ NP
Sbjct: 48  MAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNP 107
Query: 774 MYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRM 833
           MY LF  +  +  +  INP+S+ NP+HL YFKF+GR +A A+Y  R +   FT  FYK +
Sbjct: 108 MYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHI 167
Query: 834 LNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKI 893
           L K +   D+ES D  FY  LV++ +N++   G +L  S + +  G     +LK NG  I
Sbjct: 168 LGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANI 227
Query: 894 RVCEENKEEYM 904
            V EENK+EY+
Sbjct: 228 LVTEENKKEYV 238

>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 926 SSLPGHAVFPWEDLPNSWRFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYA 984
           S +P       E +    +F I +  + T  LP +HTCFN+LDLP Y+S++++   L  A
Sbjct: 335 SKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLA 394
Query: 985 IEE-TEGFG 992
           I+E +EGFG
Sbjct: 395 IQEASEGFG 403

>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388

Iteration: 1
 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 119/191 (62%)
Query: 714 IKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNP 773
           + + V R  +FEDSY ++ R    E++ RLYI+F GEEG D GG+ REW+ ++S E+ NP
Sbjct: 31  MAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNP 90
Query: 774 MYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRM 833
           MY LF  +  +  +  INP+S+ NP+HL YFKF+GR +A A+Y  R +   FT  FYK +
Sbjct: 91  MYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHI 150
Query: 834 LNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKI 893
           L K +   D+ES D  FY  LV++ +N++   G +L  S + +  G     +LK NG  I
Sbjct: 151 LGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANI 210
Query: 894 RVCEENKEEYM 904
            V EENK+EY+
Sbjct: 211 LVTEENKKEYV 221

>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 926 SSLPGHAVFPWEDLPNSWRFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYA 984
           S +P       E +    +F I +  + T  LP +HTCFN+LDLP Y+S++++   L  A
Sbjct: 318 SKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLA 377
Query: 985 IEE-TEGFG 992
           I+E +EGFG
Sbjct: 378 IQECSEGFG 386

>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of Deltex Length = 88

Iteration: 1
 Score =  135 bits (341), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 70/83 (84%), Gaps = 2/83 (2%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRY 651
           DALG LP GWE+++Q D RVYFVNHKNRTTQWEDPRTQGQE+  I  +E PLPPGWEIRY
Sbjct: 8   DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLI--NEGPLPPGWEIRY 65
Query: 652 TEDGTRYFVDHNTRSTTFEDPRP 674
           T  G R+FVDHNTR TTFEDPRP
Sbjct: 66  TAAGERFFVDHNTRRTTFEDPRP 88

>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 113/204 (55%), Gaps = 11/204 (5%)
Query: 710 LPSHIKITVARQTLFEDSYHQV----MRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFL 765
           L  ++++ V R  + +D+  ++    M  PA +L+++LY+ F GE+G+D GGVS+E+F L
Sbjct: 2   LNPYLRLKVRRDHIIDDALVRLEMIAMENPA-DLKKQLYVEFEGEQGVDEGGVSKEFFQL 60
Query: 766 LSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGF 825
           +  E+ NP   +F Y +++      NP+S+        F  IG  + +A+Y+   +   F
Sbjct: 61  VVEEIFNPDIGMFTY-DESTKLFWFNPSSFETEGQ---FTLIGIVLGLAIYNNCILDVHF 116
Query: 826 TMPFYKRMLNKKLVMKDIESIDPEFYNSL--VWIRDNNIDECGLELYLSVDFEILGQVIH 883
            M  Y++++ KK   +D+    P  Y SL  +   + N+++  +  +     ++ G  + 
Sbjct: 117 PMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMM 176
Query: 884 HELKENGDKIRVCEENKEEYMRWY 907
           ++LKENGDKI +  EN++E++  Y
Sbjct: 177 YDLKENGDKIPITNENRKEFVNLY 200

>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 943 WRFCIEKVGKDTW-LPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ 993
            +  I K G DT  LP SHTCFN L LP Y S +++ E+L  AI   +GFG 
Sbjct: 306 LKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGM 357

>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py Motif Containing Peptide Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADE-PPLPPGWEIRYTEDG 655
           LP G+E+R    G+VYF++ +   + W DPR   +++  I  +E  PLPPGWEIR T  G
Sbjct: 10  LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVP-RDLSNINCEELGPLPPGWEIRNTATG 68
Query: 656 TRYFVDHNTRSTTFEDPR 673
             YFVDHN R+T F DPR
Sbjct: 69  RVYFVDHNNRTTQFTDPR 86

>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog E3 Ubiquitin Protein Ligase Length = 173

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 209
           P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct: 57  PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 115
Query: 210 KRLNIYGVLAHYNGKCEHLEITLDLMND 237
             L+IY  L   N K E + +TL L  D
Sbjct: 116 AALDIYETLKSNNMKLEEVVVTLQLGGD 143

>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide Complex Length = 53

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 33/39 (84%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
           +E PLPPGWEIRYT  G R+FVDHNTR TTFEDPRPG P
Sbjct: 15  NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53

>pdb|2OP7|A Chain A, Ww4 Length = 39

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 32/37 (86%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675
           +E PLP GWEIRYT +G RYFVDHNTR+TTF+DPR G
Sbjct: 1   NEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNG 37

>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr Virus Latent Membrane Protein 2a Derived Peptide Eeppppyed Length = 37

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
           A+G LP GWE+R   +GRVYFVNH  R TQWEDPR+
Sbjct: 2   AMGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRS 37

>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr Virus Latent Membrane Protein 2a Derived Peptide Eeppppyed Length = 37

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWE R   +G  YFV+HNTR T +EDPR
Sbjct: 5   PLPPGWEKRTDSNGRVYFVNHNTRITQWEDPR 36

>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex Length = 50

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
           + + LG LP GWE R   DGRV+F+NH  + TQWEDPR Q   I
Sbjct: 5   DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48

>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex Length = 50

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           D  PLPPGWE R   DG  +F++HN + T +EDPR
Sbjct: 8   DLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42

>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30 Length = 37

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
           A+G LP GWE+R   +GRVYFVNH  R  QWEDPR+
Sbjct: 2   AMGPLPPGWEKRTDSNGRVYFVNHNTRIXQWEDPRS 37

>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30 Length = 37

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWE R   +G  YFV+HNTR   +EDPR
Sbjct: 5   PLPPGWEKRTDSNGRVYFVNHNTRIXQWEDPR 36

>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates The Interaction Between Aip4ww2domain And Py Motif Length = 39

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
           PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct: 6   PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39

>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates The Interaction Between Aip4ww2domain And Py Motif Length = 39

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           PLPPGWE R D  GR+YYVDH TR+TTWQRP  E
Sbjct: 6   PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39

>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates The Interaction Between Aip4ww2domain And Py Motif Length = 39

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
           A+G LP GWERRV   GR+Y+V+H  RTT W+ P
Sbjct: 3   AMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36

>pdb|2L4J|A Chain A, Yap Ww2 Length = 46

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           A G LP GWE+ + P+G +Y++NHKN+TT W DPR +
Sbjct: 8   ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLE 44

>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide Complex Length = 42

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           G +G+   PLPPGWEIR T  G  YFVDHN R+T F DPR
Sbjct: 1   GPLGSG--PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38

>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide Length = 37

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWEIR T  G  YFVDHN R+T F DPR
Sbjct: 2   PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 33

>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex With A Human Smad1 Derived Peptide Length = 35

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWE+R T  G  YFVDHN R+T F DPR
Sbjct: 3   PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 34

>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 35

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWE+R T  G  YFVDHN R+T F DPR
Sbjct: 2   PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 33

>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In Complex With A Human Smad1 Derived Peptide Length = 38

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
           G LP GWE+ +  DG +Y++NHKN+TT W DPR
Sbjct: 5   GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In Complex With A Human Smad1 Derived Peptide Length = 38

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           GA E PLP GWE   T+DG  Y+++H  ++T++ DPR
Sbjct: 1   GAMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R    GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 54

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R    GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 54

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+  DGRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 51

>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide Length = 36

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
           G LP GWE+ +  DG +Y++NHKN+TT W DPR
Sbjct: 1   GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 33

>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch Length = 40

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675
           LP GWE+R+T DG  YFVDHN R+TT+ DPR G
Sbjct: 8   LPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40

>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex With A Phosphorylated Ptpy Motif Derived From Human Smad3 Length = 35

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 2   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31

>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex With A Phosphorylated Ptpy Motif Derived From Human Smad3 Length = 35

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 2   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31

>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex With A Phosphorylated Ptpy Motif Derived From Human Smad3 Length = 35

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
            LPSGWE R    GR Y+VNH NRTT W  P  Q
Sbjct: 1   GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQ 34

>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 5   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 5   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
            LPSGWE R    GR Y+VNH NRTT W  P
Sbjct: 4   GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human Membrane-Associated Guanylate Kinase, Ww And Pdz Domain- Containing Protein 1. Magi-1 Length = 57

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 634 GQIGADE--PPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           G  GA++   PLP  WE+ YTE+G  YF+DHNT++T++ DPR
Sbjct: 4   GSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPR 45

>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2 Length = 41

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           LP GWE R+ P+GR +F++H  +TT WEDPR +
Sbjct: 9   LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK 41

>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2 Length = 41

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           LPPGWE+R   +G  +F+DHNT++TT+EDPR
Sbjct: 9   LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39

>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 34

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 3   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32

>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 34

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 3   LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32

>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide Length = 34

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
            LPSGWE R    GR Y+VNH NRTT W  P
Sbjct: 2   GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32

>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide Sdpqipppyvep Length = 49

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
           LP GWE+R+  +G  +F+DHNT++TT+EDPR  +P
Sbjct: 13  LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47

>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGWE + D  GR YYV+HN RST W RP
Sbjct: 4   PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGWE + D  GR YYV+HN RST W RP
Sbjct: 4   PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2 Length = 36

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
           LP GWE +V   GR Y+VNH NR+TQW  P
Sbjct: 5   LPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy Homolog E3 Ubiquitin Protein Ligase (Itch) Length = 43

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436
           LPPGWE R D  GRVYYVDH  + TTW RP+
Sbjct: 8   LPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38

>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy Homolog E3 Ubiquitin Protein Ligase (Itch) Length = 43

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541
           LPPGWE R D  GRVYYVDH  + TTW RP+
Sbjct: 8   LPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38

>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly Phosphorylated Human Smad3 Derived Peptide Length = 44

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           LP GWE R+ P+GR +F +H  +TT WEDPR +
Sbjct: 8   LPPGWEMRIAPNGRPFFYDHNTKTTTWEDPRLK 40

>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly Phosphorylated Human Smad3 Derived Peptide Length = 44

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
           LPPGWE+R   +G  +F DHNT++TT+EDPR   P
Sbjct: 8   LPPGWEMRIAPNGRPFFYDHNTKTTTWEDPRLKFP 42

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE +R   GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWE-KRMSNGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 53

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE +R   GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWE-KRMSNGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 53

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+  +GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMS-NGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 50

>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3 Ubiq Protein Ligase Hecw1 Length = 109

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 643 LPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           LP GWEI+  + G  +FVDHN+R+TTF DPR
Sbjct: 73  LPRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103

>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 378 WEIRQDTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTR 428
           W+  +D  GR YY +  T+ S+WE+P+ L           GW+  +   G+VYY +  TR
Sbjct: 4   WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 429 STTWQRPNSER 439
            T+W  P  E+
Sbjct: 64  ETSWTIPAFEK 74

>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTRS 534
           +E  D  GR YY +  T+ S+WE+P+ L           GW+  +   G+VYY +  TR 
Sbjct: 5   KEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRE 64
Query: 535 TTWQRPNSER 544
           T+W  P  E+
Sbjct: 65  TSWTIPAFEK 74

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYANHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYANHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSRSSGRVYYANHITNASQWERPSGNSSSGGKNGQGEP 52

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 11  LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 56

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEP 641
           LP GWE+R+ +  GRVY+ NH    +QWE P       G+ G  EP
Sbjct: 7   LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 52

>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical Coupling Analysis Length = 43

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 402 RPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436
           R  PLPPGWE R D  G+VYY +  T +TTW+RP 
Sbjct: 5   RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39

>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical Coupling Analysis Length = 43

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 507 RPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541
           R  PLPPGWE R D  G+VYY +  T +TTW+RP 
Sbjct: 5   RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE R     GRVYY +H T +  W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNAAQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE R     GRVYY +H T +  W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKRMSRSSGRVYYFNHITNAAQWERPSGNSSSGGKNGQGEPARV 55

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse Salvador Homolog 1 Protein (Sav1) Length = 49

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGW +    RGR YY+DHNT +T W  P
Sbjct: 11  PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41

>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse Salvador Homolog 1 Protein (Sav1) Length = 49

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGW +    RGR YY+DHNT +T W  P
Sbjct: 11  PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41

>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2 Length = 40

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           D+ PLP GWE+  T  G RYF++H  ++TT++DPR
Sbjct: 5   DDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 39

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 9   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 5   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 404 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 8   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 58

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 509 QPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           + LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 8   EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 58

>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg Peptide Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGV 676
           D+ PLP GWE+  T  G RYF +H  ++TT++DPR  +
Sbjct: 5   DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM 42

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 406 LPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 453
           LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 2   LPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 50

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 511 LPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHV 558
           LPPGWE       GRVYY +H T ++ W+RP+       K+ QGE A V
Sbjct: 2   LPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 50

>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant Length = 41

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           D+ PLP GWE+  T  G RYF++H  ++TT++DPR
Sbjct: 5   DDVPLPAGWEMAKTSXGQRYFLNHIDQTTTWQDPR 39

>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex With A Human Smad1 Doubly-Phosphorilated Derived Peptide Length = 40

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLP GWE+  T  G RYF++H  ++TT++DPR
Sbjct: 7   PLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 38

>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex With A Phosphorylated Human Smad1 Derived Peptide Length = 36

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLP GWE+  T  G RYF++H  ++TT++DPR
Sbjct: 3   PLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 34

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	994
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	1e-120
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	4e-31
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	5e-25
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	1e-07
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	1e-07
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	1e-05
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	1e-105
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	6e-31
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	4e-22
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	1e-103
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	8e-31
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	4e-24
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	1e-102
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	5e-31
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	4e-21
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	1e-101
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	1e-29
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	4e-19
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	1e-81
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	1e-26
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	6e-23
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	1e-33
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	5e-29
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	4e-27
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	4e-21
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	1e-12
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	8e-11
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	2e-33
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	7e-28
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	2e-25
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	1e-20
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	3e-19
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	1e-11
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-23
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	4e-21
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	9e-18
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	1e-15
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	2e-15
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	6e-14
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	1e-05
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	6e-05
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	9e-21
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	3e-20
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	1e-18
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	8e-17
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	9e-08
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	6e-05
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	3e-20
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	3e-19
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	2e-16
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	9e-15
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	9e-15
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	1e-14
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	4e-06
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	6e-19
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	1e-15
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	6e-15
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	9e-15
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	9e-15
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	2e-07
1ymz_A	43	CC45; artificial protein, computational design, un	6e-19
1ymz_A	43	CC45; artificial protein, computational design, un	6e-19
1ymz_A	43	CC45; artificial protein, computational design, un	6e-15
1ymz_A	43	CC45; artificial protein, computational design, un	2e-14
1ymz_A	43	CC45; artificial protein, computational design, un	5e-14
1ymz_A	43	CC45; artificial protein, computational design, un	6e-07
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	2e-18
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	4e-16
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	2e-15
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	2e-15
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	2e-14
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	5e-06
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	3e-18
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	3e-18
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	2e-16
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	4e-13
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	2e-12
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	6e-05
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	6e-18
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	4e-15
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	8e-15
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	8e-15
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	1e-14
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	6e-06
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	2e-17
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	1e-15
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	1e-14
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	1e-14
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	5e-14
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	3e-06
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	2e-17
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	1e-15
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	2e-15
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	3e-12
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	2e-05
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	3e-17
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	2e-16
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	2e-16
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	3e-16
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	3e-15
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	1e-08
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	3e-17
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	4e-17
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	4e-17
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	2e-14
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	3e-14
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	7e-06
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	4e-17
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	5e-17
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	2e-15
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	2e-15
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	7e-15
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	1e-06
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	5e-17
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	1e-15
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	2e-15
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	2e-15
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	1e-14
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	4e-06
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	6e-17
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	3e-16
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	3e-16
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	6e-15
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	1e-13
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	1e-06
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	1e-16
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	4e-15
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	8e-15
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	8e-15
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	1e-13
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	6e-06
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	2e-16
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	2e-16
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	3e-15
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	4e-12
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	1e-11
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	2e-16
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	2e-16
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	4e-16
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	8e-15
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	9e-15
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	2e-08
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	3e-16
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	3e-16
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	1e-15
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	7e-15
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	1e-14
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	5e-07
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	3e-16
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	6e-16
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	6e-16
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	6e-16
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	7e-14
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	3e-06
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	3e-16
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	3e-16
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	3e-13
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	3e-13
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	1e-11
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	2e-06
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	6e-16
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	6e-16
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	1e-14
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	1e-14
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	2e-14
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	2e-07
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	1e-15
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	3e-15
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	3e-15
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	2e-14
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	9e-13
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	2e-06
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	3e-15
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	6e-15
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	3e-14
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	3e-14
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	7e-13
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	2e-05
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	3e-15
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	7e-15
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	7e-15
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	1e-14
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	5e-13
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	4e-06
2jxw_A	75	WW domain-binding protein 4; WW domain containing	5e-15
2jxw_A	75	WW domain-binding protein 4; WW domain containing	5e-12
2jxw_A	75	WW domain-binding protein 4; WW domain containing	3e-11
2jxw_A	75	WW domain-binding protein 4; WW domain containing	6e-11
2jxw_A	75	WW domain-binding protein 4; WW domain containing	2e-10
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	2e-14
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	4e-14
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	2e-12
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	2e-12
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	3e-10
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	7e-04
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-13
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-13
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-12
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	6e-12
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	6e-12
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	5e-11
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	3e-10
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	4e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-05
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	5e-09
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	1e-08
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	3e-07
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	3e-07
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	1e-04
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	5e-04
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-08
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-08
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-05
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-07
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-07
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-07
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-07
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-07
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	5e-07
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	9e-06
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	9e-06
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	3e-04
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-07
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	8e-07
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-07
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-06
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-06
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	2e-06
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	2e-05
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	2e-05
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	9e-06
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-05
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	1e-05
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	4e-04
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-05
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-05
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	3e-05
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	6e-04
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-05
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	7e-05
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	9e-05
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-04
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-04
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-04
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-04
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-04
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-04
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	7e-04
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	7e-04
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	8e-04
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-04

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score =  373 bits (961), Expect = e-120
 Identities = 129/271 (47%), Positives = 176/271 (64%), Gaps = 6/271 (2%)

Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRW 696
            +   PLP GWE+R T     YFVDHNT++TT++DPR                Y+R FR 
Sbjct: 3   ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL-----PSSLDQNVPQYKRDFRR 57

Query: 697 KLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYG 756
           K+  FR      +LP    I V R+ +FED+Y ++MR    +L++RL I F GEEGLDYG
Sbjct: 58  KVIYFRSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYG 117

Query: 757 GVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALY 816
           GVSRE+FFLLSHE+ NP YCLFEY+  +NY++QINP S +NP+HL YFKFIGR + + ++
Sbjct: 118 GVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVF 177

Query: 817 HGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFE 876
           H RF+ + F    YK ML KK+V++D+E +D E YNSL W+ +N+ID   L+L  S D E
Sbjct: 178 HRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDE 236

Query: 877 ILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
             G+V+  +LK +G  I V + NK+EY+  Y
Sbjct: 237 RFGEVVTVDLKPDGRNIEVTDGNKKEYVELY 267

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score =  126 bits (318), Expect = 4e-31
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y  L T+WR+   ++EQ KAF+DGFNE++P + +  FDERELEL++ G+ EID+EDW+++
Sbjct: 263 YVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKH 322

Query: 110 AIYRHYTRNSKQ 121
             YR Y  + + 
Sbjct: 323 TDYRGYQESDEV 334

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score =  108 bits (271), Expect = 5e-25
 Identities = 33/51 (64%), Positives = 38/51 (74%)

Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
           RF IEK G+   LP+SHTCFNR+DLP Y  YD M +KL  A+EET GFGQE
Sbjct: 379 RFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 429

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 398 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGER 450
           S+  +  PLP GWE+R     RVY+VDHNT++TTW  P           Q +R
Sbjct: 1   SNASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKR 53

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 503 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGER 555
           S+  +  PLP GWE+R     RVY+VDHNT++TTW  P           Q +R
Sbjct: 1   SNASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKR 53

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG----WELRRDPRGRVYY 422
              PLP GWE+R     R Y+VDHNT++++W+ P+          + +RD R +V Y
Sbjct: 5   QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKVIY 61

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score =  333 bits (855), Expect = e-105
 Identities = 159/214 (74%), Positives = 184/214 (85%)

Query: 694 FRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGL 753
           FRWKL+ FRYLC  N LPSH+KI V+RQTLFEDS+ Q+M L  Y+LRRRLY+IFRGEEGL
Sbjct: 4   FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGL 63

Query: 754 DYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAM 813
           DYGG++REWFFLLSHEVLNPMYCLFEYA KNNY LQINPAS +NPDHL YF FIGRFIAM
Sbjct: 64  DYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAM 123

Query: 814 ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV 873
           AL+HG+FI +GF++PFYKRML+KKL +KD+ESID EFYNSL+WIRDNNI+ECGLE+Y SV
Sbjct: 124 ALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSV 183

Query: 874 DFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
           D EILG+V  H+LK  G  I V EENK+EY+   
Sbjct: 184 DMEILGKVTSHDLKLGGSNILVTEENKDEYIGLM 217

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score =  125 bits (315), Expect = 6e-31
 Identities = 55/72 (76%), Positives = 67/72 (93%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y  LMTEWR +RG++EQTKAFLDGFNEVVP++WL+YFDE+ELE++LCGMQE+D+ DWQRN
Sbjct: 213 YIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRN 272

Query: 110 AIYRHYTRNSKQ 121
            +YRHYTRNSKQ
Sbjct: 273 TVYRHYTRNSKQ 284

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score = 98.4 bits (246), Expect = 4e-22
 Identities = 43/65 (66%), Positives = 48/65 (73%), Gaps = 8/65 (12%)

Query: 925 FSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYA 984
           F+ L G             +FCIEKVGKDTWLPRSHTCFNRLDLPPYKSY+Q+ EKL +A
Sbjct: 318 FAELMGSNGPQ--------KFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFA 369

Query: 985 IEETE 989
           IEETE
Sbjct: 370 IEETE 374

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score =  327 bits (840), Expect = e-103
 Identities = 110/218 (50%), Positives = 150/218 (68%), Gaps = 2/218 (0%)

Query: 691 ERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG 749
           +R    KL   R  L        H +I V+R+ +FE+SY QVM++   +L +RL I FRG
Sbjct: 1   KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG 60

Query: 750 EEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGR 809
           EEGLDYGGV+REW +LLSHE+LNP Y LF+Y+  + Y+LQINP S VNP+HL YF F+GR
Sbjct: 61  EEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGR 120

Query: 810 FIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLEL 869
            + MA++HG +I  GFT+PFYK++L K + + D+E +DP+ +NSLVWI +N+I    L+ 
Sbjct: 121 IMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGV-LDH 179

Query: 870 YLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
              V+    G++I HELK NG  I V EENK+EY+R Y
Sbjct: 180 TFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLY 217

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score =  124 bits (314), Expect = 8e-31
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y RL   WR  RGIE Q  A   GFNEV+P   LK FDE+ELELI+CG+ +IDV DW+ N
Sbjct: 213 YVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVN 272

Query: 110 AIYRHYTRNSKQ 121
              +H T +S  
Sbjct: 273 TRLKHCTPDSNI 284

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score =  104 bits (262), Expect = 4e-24
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
            F I ++   T  LP++HTCFNR+D+PPY+SY+++ EKL  AIEET GF  E
Sbjct: 329 LFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score =  326 bits (837), Expect = e-102
 Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 4/216 (1%)

Query: 692 RSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEE 751
           + FR +L +             + + V R  +FEDSY ++ R    E++ RLYI+F GEE
Sbjct: 30  KYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEE 85

Query: 752 GLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFI 811
           G D GG+ REW+ ++S E+ NPMY LF  +  +  +  INP+S+ NP+HL YFKF+GR +
Sbjct: 86  GQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIV 145

Query: 812 AMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYL 871
           A A+Y  R +   FT  FYK +L K +   D+ES D  FY  LV++ +N++   G +L  
Sbjct: 146 AKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTF 205

Query: 872 SVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
           S + +  G     +LK NG  I V EENK+EY+   
Sbjct: 206 STEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLV 241

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score =  125 bits (317), Expect = 5e-31
 Identities = 30/72 (41%), Positives = 44/72 (61%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y  L+ + RMT  I +Q  AFL+GF E++P   +  F E+ELEL++ G+  ID++D + N
Sbjct: 237 YVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSN 296

Query: 110 AIYRHYTRNSKQ 121
             Y  Y  NS Q
Sbjct: 297 TEYHKYQSNSIQ 308

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score = 96.1 bits (240), Expect = 4e-21
 Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE-TEGFG 992
           +F I +  + T  LP +HTCFN+LDLP Y+S++++   L  AI+E +EGFG
Sbjct: 353 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFG 403

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score =  323 bits (829), Expect = e-101
 Identities = 102/230 (44%), Positives = 141/230 (61%), Gaps = 5/230 (2%)

Query: 681 KGAYGVPKAYERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE- 738
            G   +     R F+ K   FR  L     +P+  ++ + R  +FE+SY ++M +   + 
Sbjct: 9   SGRENLYFQGSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDV 68

Query: 739 LRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASY-VN 797
           L+ RL+I F  E+GLDYGGV+REWFFLLS E+ NP Y LFEY+  +NY+LQINP S   N
Sbjct: 69  LKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCN 128

Query: 798 PDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWI 857
            DHL YF FIGR   +A++HG+ +   F  PFYK ML K++ + D+ES+D E+YNSL WI
Sbjct: 129 EDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI 188

Query: 858 RDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
            +N+  E  L+L   +D E  GQ    +LK NG +I V  ENK EY+   
Sbjct: 189 LENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLV 236

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score =  121 bits (305), Expect = 1e-29
 Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
           Y  L+ +WR    +++Q  AFL+GF E++PI+ +K FDE ELEL++CG+ ++DV DW+++
Sbjct: 232 YIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQH 291

Query: 110 AIYRH-YTRNSKQ 121
           +IY++ Y  N   
Sbjct: 292 SIYKNGYCPNHPV 304

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score = 89.6 bits (223), Expect = 4e-19
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986
            F IE+ G    LPR+HTCFNRLDLPPY++++ + EKL  A+E
Sbjct: 349 LFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVE 391

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score =  268 bits (687), Expect = 1e-81
 Identities = 56/204 (27%), Positives = 111/204 (54%), Gaps = 11/204 (5%)

Query: 710 LPSHIKITVARQTLFEDSYHQ---VMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLL 766
           L  ++++ V R  + +D+  +   +      +L+++LY+ F GE+G+D GGVS+E+F L+
Sbjct: 2   LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLV 61

Query: 767 SHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFT 826
             E+ NP   +F Y +++      NP+S    +    F  IG  + +A+Y+   +   F 
Sbjct: 62  VEEIFNPDIGMFTY-DESTKLFWFNPSS---FETEGQFTLIGIVLGLAIYNNCILDVHFP 117

Query: 827 MPFYKRMLNKKLVMKDIESIDPEFYNSLVWIR--DNNIDECGLELYLSVDF-EILGQVIH 883
           M  Y++++ KK   +D+    P  Y SL  +   + N+++  + +   +   ++ G  + 
Sbjct: 118 MVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDD-MMITFQISQTDLFGNPMM 176

Query: 884 HELKENGDKIRVCEENKEEYMRWY 907
           ++LKENGDKI +  EN++E++  Y
Sbjct: 177 YDLKENGDKIPITNENRKEFVNLY 200

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score =  111 bits (280), Expect = 1e-26
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 50  YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKY-FDERELELILCGMQEIDVEDWQR 108
           +  L +++ + + +E+Q KAF  GF+ V     LKY F   E+EL++CG + +D +  + 
Sbjct: 196 FVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEE 255

Query: 109 NAIYR-HYTRNSKQ 121
              Y   YTR+S  
Sbjct: 256 TTEYDGGYTRDSVL 269

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score =  100 bits (252), Expect = 6e-23
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992
           +  I K G DT  LP SHTCFN L LP Y S +++ E+L  AI   +GFG
Sbjct: 307 KMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFG 356

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score =  123 bits (310), Expect = 1e-33
 Identities = 36/83 (43%), Positives = 46/83 (55%)

Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIR 650
             +   LP G+E+R    G+VYF++ +   + W DPR           +  PLPPGWEIR
Sbjct: 4   GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIR 63

Query: 651 YTEDGTRYFVDHNTRSTTFEDPR 673
            T  G  YFVDHN R+T F DPR
Sbjct: 64  NTATGRVYFVDHNNRTTQFTDPR 86

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score =  110 bits (276), Expect = 5e-29
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 17/90 (18%)

Query: 366 PALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP--------------QPLPPGWE 411
           P       LP G+E R    G+ Y++   T  S+W  P               PLPPGWE
Sbjct: 2   PLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE 61

Query: 412 LRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
           +R    GRVY+VDHN R+T +  P   RL 
Sbjct: 62  IRNTATGRVYFVDHNNRTTQFTDP---RLS 88

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score =  104 bits (261), Expect = 4e-27
 Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 40/123 (32%)

Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 567
           P  LP G+E R   +G+VY++   T  +TW  P   R+                      
Sbjct: 7   PPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDP---RVPRDLSNINCEEL---------- 53

Query: 568 YPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
                                      G LP GWE R    GRVYFV+H NRTTQ+ DPR
Sbjct: 54  ---------------------------GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 86

Query: 628 TQG 630
              
Sbjct: 87  LSA 89

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 87.6 bits (217), Expect = 4e-21
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 17/77 (22%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP--------------QPLPPGWELRRDPRGRVYYVD 529
           E+     G+ Y++   T  S+W  P               PLPPGWE+R    GRVY+VD
Sbjct: 15  EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVD 74

Query: 530 HNTRSTTWQRPNSERLQ 546
           HN R+T +  P   RL 
Sbjct: 75  HNNRTTQFTDP---RLS 88

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQ 680
           G +G   P LP G+E R T+ G  YF+   T  +T+ DPR       
Sbjct: 1   GPLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSN 47

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 354 TSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
             PR    +          PLPPGWEIR    GR Y+VDHN R++ +  P
Sbjct: 37  HDPRV-PRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 85

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score =  122 bits (308), Expect = 2e-33
 Identities = 63/86 (73%), Positives = 69/86 (80%), Gaps = 2/86 (2%)

Query: 589 EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWE 648
              DALG LP GWE+++Q D RVYFVNHKNRTTQWEDPRTQGQE+     +E PLPPGWE
Sbjct: 5   FHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSL--INEGPLPPGWE 62

Query: 649 IRYTEDGTRYFVDHNTRSTTFEDPRP 674
           IRYT  G R+FVDHNTR TTFEDPRP
Sbjct: 63  IRYTAAGERFFVDHNTRRTTFEDPRP 88

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score =  106 bits (267), Expect = 7e-28
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 365 PPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP------------QPLPPGWEL 412
              +    PLP GWE +  +  R Y+V+H  R++ WE P             PLPPGWE+
Sbjct: 4   EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEI 63

Query: 413 RRDPRGRVYYVDHNTRSTTWQRP 435
           R    G  ++VDHNTR TT++ P
Sbjct: 64  RYTAAGERFFVDHNTRRTTFEDP 86

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score =  100 bits (250), Expect = 2e-25
 Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 42/126 (33%)

Query: 502 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ 561
               +   PLP GWE +     RVY+V+H  R+T W+ P ++  +               
Sbjct: 4   EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEV-------------- 49

Query: 562 GSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTT 621
                                            G LP GWE R    G  +FV+H  R T
Sbjct: 50  ----------------------------SLINEGPLPPGWEIRYTAAGERFFVDHNTRRT 81

Query: 622 QWEDPR 627
            +EDPR
Sbjct: 82  TFEDPR 87

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score = 86.5 bits (214), Expect = 1e-20
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 12/69 (17%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP------------QPLPPGWELRRDPRGRVYYVDHN 531
           E+   +  R Y+V+H  R++ WE P             PLPPGWE+R    G  ++VDHN
Sbjct: 18  EKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHN 77

Query: 532 TRSTTWQRP 540
           TR TT++ P
Sbjct: 78  TRRTTFEDP 86

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 29/114 (25%)

Query: 397 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ 456
               +   PLP GWE +     RVY+V+H  R+T W+ P ++  +     +G        
Sbjct: 4   EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGP------- 56

Query: 457 GSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQP 510
                     G                E      G R++VDHNTR +++E P+P
Sbjct: 57  -------LPPGW---------------EIRYTAAGERFFVDHNTRRTTFEDPRP 88

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 352 GTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
            TT     ++ G   +L  E PLPPGWEIR    G R++VDHNTR +++E P+P
Sbjct: 35  RTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 88

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 95.7 bits (238), Expect = 7e-23
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG 208
            P+PY+E+ VD    K T    NT  PKW +  TV+V+P S + FR+  H+T + D  +G
Sbjct: 56  GPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLG 114

Query: 209 EKRLNIYGVLAHYNGKCEHLEITLDLMNDSR 239
              L+IY  L   N K E + +TL L  D  
Sbjct: 115 TAALDIYETLKSNNMKLEEVVVTLQLGGDKE 145

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 87.8 bits (217), Expect = 4e-21
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL---------PPGWELR 413
           G   A          W   +   GR YY +  T+ S+WE+P  L            W+  
Sbjct: 1   GSDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEY 60

Query: 414 RDPRGRVYYVDHNTRSTTWQRP 435
           +   G+ YY +  T+ + W +P
Sbjct: 61  KSDSGKTYYYNSQTKESRWAKP 82

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 78.2 bits (192), Expect = 9e-18
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEI 649
                    S W     PDGR Y+ N + + + WE P            ++      W+ 
Sbjct: 5   AAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA-----EQLLSKCPWKE 59

Query: 650 RYTEDGTRYFVDHNTRSTTFEDPR 673
             ++ G  Y+ +  T+ + +  P+
Sbjct: 60  YKSDSGKTYYYNSQTKESRWAKPK 83

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 45/120 (37%)

Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 567
                  W   + P GR YY +  T+ +TW++P+  +    +                  
Sbjct: 9   ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL----------------- 51

Query: 568 YPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
                                            W+      G+ Y+ N + + ++W  P+
Sbjct: 52  ----------------------------LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 71.6 bits (175), Expect = 2e-15
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTRS 534
            E     GR YY +  T+ S+WE+P  L            W+  +   G+ YY +  T+ 
Sbjct: 17  TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKE 76

Query: 535 TTWQRP 540
           + W +P
Sbjct: 77  SRWAKP 82

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 67.4 bits (164), Expect = 6e-14
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 32/109 (29%)

Query: 403 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 462
                  W   + P GR YY +  T+ +TW++P+  +    +                  
Sbjct: 9   ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL----------------- 51

Query: 463 YPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPL 511
                           S    +E     G+ YY +  T+ S W +P+ L
Sbjct: 52  ---------------LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
                     W    + DG  Y+ +  T+ +T+E P  
Sbjct: 6   AGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 43

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
             +      W+  +   G+ YY +  T+ S W +P+ L
Sbjct: 48  AEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 86.1 bits (213), Expect = 9e-21
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 599 SGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRY 658
           S W+      GR+Y+ N   + + WE P+    +      +      GW+   T DG  Y
Sbjct: 2   SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQ-----EELLLRENGWKAAKTADGKVY 56

Query: 659 FVDHNTRSTTFEDPR 673
           + +  TR T++  P 
Sbjct: 57  YYNPTTRETSWTIPA 71

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 84.9 bits (210), Expect = 3e-20
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNT 427
            W+  +D  GR YY +  T+ S+WE+P+             GW+  +   G+VYY +  T
Sbjct: 3   IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62

Query: 428 RSTTWQRPNSER 439
           R T+W  P  E+
Sbjct: 63  RETSWTIPAFEK 74

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNTRS 534
           +E  D  GR YY +  T+ S+WE+P+             GW+  +   G+VYY +  TR 
Sbjct: 5   KEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRE 64

Query: 535 TTWQRPNSER 544
           T+W  P  E+
Sbjct: 65  TSWTIPAFEK 74

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 74.9 bits (184), Expect = 8e-17
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 45/116 (38%)

Query: 514 GWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGV 573
            W+  +D  GR+YY +  T+ +TW++P     Q                           
Sbjct: 3   IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELL----------------------- 39

Query: 574 GVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
                                    +GW+     DG+VY+ N   R T W  P  +
Sbjct: 40  ----------------------LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
                   GW+  +   G+ YY +  TR +SW  P
Sbjct: 36  EELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 646 GWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGA 683
            W+      G  Y+ +  T+ +T+E P+  + +++   
Sbjct: 3   IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLL 40

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992
               +   D  LP ++TC +RL +P Y S   + +KL  AI+  + FG
Sbjct: 70  SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFG 116

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 80.9 bits (200), Expect = 3e-19
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
           S+G +  +D LG LP  WE     +G VYF++H  +TT W DPR   ++ 
Sbjct: 2   SSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ 51

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYG 685
           +  PLP  WE+ YTE+G  YF+DHNT++T++ DPR    +    + G
Sbjct: 11  NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGPSSG 57

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 68.6 bits (168), Expect = 9e-15
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
           PLP  WE+     G VY++DHNT++T+W  P   R  +
Sbjct: 14  PLPENWEMAYTENGEVYFIDHNTKTTSWLDP---RCLN 48

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 68.6 bits (168), Expect = 9e-15
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           PLP  WE+     G VY++DHNT++T+W  P   R  +
Sbjct: 14  PLPENWEMAYTENGEVYFIDHNTKTTSWLDP---RCLN 48

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 361 SNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
           S+G   A     PLP  WE+     G  Y++DHNT+++SW  P+ L  
Sbjct: 2   SSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK 49

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
           E      G  Y++DHNT+++SW  P+ L  
Sbjct: 20  EMAYTENGEVYFIDHNTKTTSWLDPRCLNK 49

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 32/52 (61%), Positives = 35/52 (67%)

Query: 626 PRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
           P    +       +E PLPPGWEIRYT  G R+FVDHNTR TTFEDPRPG P
Sbjct: 2   PLGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 358 AAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
                    +L  E PLPPGWEIR    G R++VDHNTR +++E P+P  P
Sbjct: 3   LGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
            G LP GWE R    G  +FV+H  R T +EDPR  
Sbjct: 16  EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 68.2 bits (167), Expect = 9e-15
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGWE+R    G  ++VDHNTR TT++ P
Sbjct: 18  PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 68.2 bits (167), Expect = 9e-15
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGWE+R    G  ++VDHNTR TT++ P
Sbjct: 18  PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
           E      G R++VDHNTR +++E P+P  P
Sbjct: 24  EIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 80.0 bits (198), Expect = 6e-19
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           S  R  PLPPGWE R D  G+VYY +  T +TTW+RP
Sbjct: 2   SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 80.0 bits (198), Expect = 6e-19
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           S  R  PLPPGWE R D  G+VYY +  T +TTW+RP
Sbjct: 2   SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
                 LP GWERR   +G+VY+ N +  TT WE P    +
Sbjct: 3   HGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIILE 43

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
              PLPPGWE R D  G+ YY +  T +++WERP  +
Sbjct: 5   RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
               PLPPGWE R   +G  Y+ +  T +TT+E P 
Sbjct: 4   GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL 511
           E   D  G+ YY +  T +++WERP  +
Sbjct: 14  ERRTDVEGKVYYFNVRTLTTTWERPTII 41

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
           + + LG LP GWE R   DGRV+F+NH  + TQWEDPR Q   I
Sbjct: 5   DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           D  PLPPGWE R   DG  +F++HN + T +EDPR
Sbjct: 8   DLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
           PLPPGWE R    GRV++++HN + T W+ P   R+Q+
Sbjct: 11  PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           PLPPGWE R    GRV++++HN + T W+ P   R+Q+
Sbjct: 11  PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           G P       PLPPGWE R  T GR ++++HN + + WE P
Sbjct: 1   GSPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE   T GR ++++HN + + WE P
Sbjct: 17  EERTHTDGRVFFINHNIKKTQWEDP 41

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 78.2 bits (193), Expect = 3e-18
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 394 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           ++ SS  +    LP GWE   DP   +YYVDH  R T ++ P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 78.2 bits (193), Expect = 3e-18
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 499 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           ++ SS  +    LP GWE   DP   +YYVDH  R T ++ P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
           S+G +  D     LP+GWE+   P   +Y+V+H NR TQ+E+P     
Sbjct: 2   SSGSSGLDS-ELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGPSS 48

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 362 NGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           +     L  E  LP GWE  +D     YYVDH  R + +E P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
            E  LP GWE         Y+VDH  R T +E+P 
Sbjct: 10  SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPS 44

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E+  D     YYVDH  R + +E P
Sbjct: 19  EKIEDPVYGIYYVDHINRKTQYENP 43

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 77.3 bits (191), Expect = 6e-18
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
           G      A G LP GWE+ + P+G +Y++NHKN+TT W DPR + +
Sbjct: 1   GSPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
              PLP GWE   T +G  Y+++H  ++T++ DPR
Sbjct: 8   ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
           PLP GWE    P G +YY++H  ++T+W  P   RL+
Sbjct: 11  PLPEGWEQAITPEGEIYYINHKNKTTSWLDP---RLE 44

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
           PLP GWE    P G +YY++H  ++T+W  P   RL+
Sbjct: 11  PLPEGWEQAITPEGEIYYINHKNKTTSWLDP---RLE 44

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           G P + P   PLP GWE      G  YY++H  +++SW  P
Sbjct: 1   GSPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E+     G  YY++H  +++SW  P
Sbjct: 17  EQAITPEGEIYYINHKNKTTSWLDP 41

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675
           +    LP GWE+R+T DG  YFVDHN R+TT+ DPR G
Sbjct: 3   SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 19/37 (51%), Positives = 21/37 (56%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
                LP GWE R   DG  YFV+H  RTT + DPRT
Sbjct: 3   SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
             LP GWE+R    G  Y+VDHN R+TT+  P
Sbjct: 6   SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
             LP GWE+R    G  Y+VDHN R+TT+  P
Sbjct: 6   SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 367 ALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
                  LP GWE+R    G  Y+VDHN R++++  P+ 
Sbjct: 1   GSSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP 510
           E      G  Y+VDHN R++++  P+ 
Sbjct: 13  EMRFTVDGIPYFVDHNRRTTTYIDPRT 39

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 78.1 bits (192), Expect = 2e-17
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 598 PSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTR 657
              +ER       V F+N       + D R               LP GWEI+  + G  
Sbjct: 47  ARNFERYQHNRDLVNFIN------MFADTRL-------------ELPRGWEIKTDQQGKS 87

Query: 658 YFVDHNTRSTTFEDPRPGVPK 678
           +FVDHN+R+TTF DPR  +  
Sbjct: 88  FFVDHNSRATTFIDPRIPLQN 108

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 360 QSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGR 419
            S  L   +         +E  Q       +++    +        LP GWE++ D +G+
Sbjct: 32  SSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTR-----LELPRGWEIKTDQQGK 86

Query: 420 VYYVDHNTRSTTWQRP 435
            ++VDHN+R+TT+  P
Sbjct: 87  SFFVDHNSRATTFIDP 102

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 72.0 bits (176), Expect = 2e-15
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 532 TRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED 591
           T ST  +    +  +  ++++            R+ + +  V   +  A           
Sbjct: 31  TSSTCLKHMILKVRRDARNFE------------RYQHNRDLVNFINMFA----------- 67

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
           D    LP GWE +    G+ +FV+H +R T + DPR   Q
Sbjct: 68  DTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQ 107

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 63.1 bits (153), Expect = 3e-12
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
             LP GWE++ D +G+ ++VDHN+R+TT+  P
Sbjct: 71  LELPRGWEIKTDQQGKSFFVDHNSRATTFIDP 102

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 31/99 (31%)

Query: 427 TRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVT--- 483
           T ST  +    +  +  ++++                 QH     +   V+F        
Sbjct: 31  TSSTCLKHMILKVRRDARNFE---------------RYQH-----NRDLVNFINMFADTR 70

Query: 484 -------EEDADTYGRRYYVDHNTRSSSWERPQ-PLPPG 514
                  E   D  G+ ++VDHN+R++++  P+ PL  G
Sbjct: 71  LELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQNG 109

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 75.5 bits (186), Expect = 3e-17
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
            ++ PLPPGW + +T  G +Y++DHNT +T +  P    P
Sbjct: 7   GEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 397 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           S S     PLPPGW +    RGR YY+DHNT +T W  P
Sbjct: 3   SGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 502 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           S S     PLPPGW +    RGR YY+DHNT +T W  P
Sbjct: 3   SGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
           + PLPPGW +     GR+YY+DHNT ++ W  P    P
Sbjct: 9   DLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIG 634
           G +        LP GW       GR Y+++H   TT W  P   G   G
Sbjct: 1   GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGPSSG 49

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
             D    GR+YY+DHNT ++ W  P    P
Sbjct: 17  SVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPK 678
           D+ PLP GWE+  T  G RYF +H  ++TT++DPR  +  
Sbjct: 5   DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 400 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
           +E P   PLP GWE+ +   G+ Y+ +H  ++TTWQ P    L  
Sbjct: 1   FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 505 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           +E P   PLP GWE+ +   G+ Y+ +H  ++TTWQ P    L  
Sbjct: 1   FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           E      LP+GWE      G+ YF NH ++TT W+DPR  
Sbjct: 2   EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 13/36 (36%), Positives = 26/36 (72%)

Query: 368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           +P + PLP GWE+ + + G+RY+ +H  ++++W+ P
Sbjct: 3   IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E    + G+RY+ +H  ++++W+ P
Sbjct: 14  EMAKTSSGQRYFKNHIDQTTTWQDP 38

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
            ++  LP GWE+R+  +G  +F+DHNT++TT+EDPR  +P
Sbjct: 8   IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
            +   G LP GWE R  P+GR +F++H  +TT WEDPR +
Sbjct: 6   SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
            LP GWE+R  P GR +++DHNT++TTW+ P  +   H
Sbjct: 12  FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAH 49

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
            LP GWE+R  P GR +++DHNT++TTW+ P  +   H
Sbjct: 12  FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAH 49

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 68.5 bits (168), Expect = 7e-15
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 364 LPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
           + P+   +  LP GWE+R    GR +++DHNT++++WE P+   P
Sbjct: 3   MGPSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
           E      GR +++DHNT++++WE P+   P
Sbjct: 18  EVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
           +E PLPP W ++   +G  +F+DH +R TT+ DPR G  
Sbjct: 7   EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
                LP  W  +V P+GR +F++H +R T W DPR  
Sbjct: 6   GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 439
           +PLPP W ++  P GR +++DH +R TTW  P + R
Sbjct: 9   EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGR 44

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544
           +PLPP W ++  P GR +++DH +R TTW  P + R
Sbjct: 9   EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGR 44

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 365 PPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
           P     EEPLPP W ++    GR +++DH +R ++W  P+ 
Sbjct: 2   PLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP 510
                  GR +++DH +R ++W  P+ 
Sbjct: 16  SMQVAPNGRTFFIDHASRRTTWIDPRN 42

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 74.1 bits (183), Expect = 6e-17
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           A+G LP GWERRV   GR+Y+V+H  RTT W+ P  +
Sbjct: 3   AMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 3/37 (8%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
           PLPPGWE R D  GR+YYVDH TR+TTWQRP    L+
Sbjct: 6   PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP---TLE 39

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 3/37 (8%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
           PLPPGWE R D  GR+YYVDH TR+TTWQRP    L+
Sbjct: 6   PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP---TLE 39

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 68.7 bits (169), Expect = 6e-15
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           G    PLPPGWE R    G  Y+VDH TR+TT++ P 
Sbjct: 1   GRAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 64.8 bits (159), Expect = 1e-13
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           PLPPGWE R D  GR YYVDH TR+++W+RP
Sbjct: 6   PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E   D  GR YYVDH TR+++W+RP
Sbjct: 12  ERRVDNMGRIYYVDHFTRTTTWQRP 36

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           GA E PLP GWE   T+DG  Y+++H  ++T++ DPR
Sbjct: 1   GAMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
              G LP GWE+ +  DG +Y++NHKN+TT W DPR
Sbjct: 2   AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLP GWE      G +YY++H  ++T+W  P
Sbjct: 6   PLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLP GWE      G +YY++H  ++T+W  P
Sbjct: 6   PLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
             E PLP GWE      G  YY++H  +++SW  P
Sbjct: 2   AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E+     G  YY++H  +++SW  P
Sbjct: 12  EQAMTQDGEIYYINHKNKTTSWLDP 36

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 394 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           ++ SS  +    LP GWE   DP   +YYVDH  R T ++ P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 499 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           ++ SS  +    LP GWE   DP   +YYVDH  R T ++ P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIG 637
           S+G +  D     LP+GWE+   P   +Y+V+H NR TQ+E+P  + +   Q+ 
Sbjct: 2   SSGSSGLDS-ELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLE 54

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 362 NGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           +     L  E  LP GWE  +D     YYVDH  R + +E P
Sbjct: 2   SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQ 680
            E  LP GWE         Y+VDH  R T +E+P     + +
Sbjct: 10  SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKK 51

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 21/38 (55%), Positives = 23/38 (60%)

Query: 401 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
                LPPGWE R D  GRVYYVDH  + TTW RP+  
Sbjct: 3   SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 21/38 (55%), Positives = 23/38 (60%)

Query: 506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
                LPPGWE R D  GRVYYVDH  + TTW RP+  
Sbjct: 3   SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 367 ALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
                  LPPGWE R D +GR YYVDH  + ++W+RP     G
Sbjct: 1   GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG 43

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
           +    LPPGWE R  + G  Y+VDH  + TT++ P  
Sbjct: 3   SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
                LP GWE+RV   GRVY+V+H  + T W+ P 
Sbjct: 3   SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPG 514
           E+  D +GR YYVDH  + ++W+RP     G
Sbjct: 13  EQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG 43

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436
           PLPPGWE + D  GR YYV+HN RST W RP+
Sbjct: 4   PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541
           PLPPGWE + D  GR YYV+HN RST W RP+
Sbjct: 4   PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 70.2 bits (173), Expect = 1e-15
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
            PPLPPGWE +    G  Y+V+HN RST +  P 
Sbjct: 2   SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 68.3 bits (168), Expect = 7e-15
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
               LP GWE +V   GR Y+VNH NR+TQW  P 
Sbjct: 1   GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
             PLPPGWE + D  GR YYV+HN RS+ W RP
Sbjct: 2   SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE  D  GR YYV+HN RS+ W RP
Sbjct: 10  EEKVDNLGRTYYVNHNNRSTQWHRP 34

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
             +  LPPGWE+R   +G  +F+DHNT++TT+EDPR
Sbjct: 4   GIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
             LP GWE R+ P+GR +F++H  +TT WEDPR +
Sbjct: 7   SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK 41

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
           S      LPPGWE+R  P GR +++DHNT++TTW+ P   RL+
Sbjct: 2   SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP---RLK 41

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
           S      LPPGWE+R  P GR +++DHNT++TTW+ P   RL+
Sbjct: 2   SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP---RLK 41

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
            +  LPPGWE+R    GR +++DHNT++++WE P+
Sbjct: 5   IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           E      GR +++DHNT++++WE P+
Sbjct: 14  EMRIAPNGRPFFIDHNTKTTTWEDPR 39

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437
             LPPGW+    P+GR YYV+  T  TTW+RP+S
Sbjct: 6   SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542
             LPPGW+    P+GR YYV+  T  TTW+RP+S
Sbjct: 6   SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
              LPPGW+      GRRYYV+  T  ++WERP 
Sbjct: 5   SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
             LP GW+  + P GR Y+VN     T WE P +
Sbjct: 6   SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           +    LPPGW+   +  G RY+V+  T  TT+E P 
Sbjct: 3   SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           +      GRRYYV+  T  ++WERP 
Sbjct: 13  QSYLSPQGRRYYVNTTTNETTWERPS 38

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
            LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 4   GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
            LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 4   GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
            P LP GWE R    G  Y+V+HN R+TT+  P 
Sbjct: 2   SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
              LP GWE R+D  GR YYV+HN R+++W RP
Sbjct: 2   SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 19/35 (54%), Positives = 20/35 (57%)

Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
               LPSGWE R    GR Y+VNH NRTT W  P 
Sbjct: 1   GSPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE  D  GR YYV+HN R+++W RP
Sbjct: 10  EERKDAKGRTYYVNHNNRTTTWTRP 34

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
             LP GW+     +G+ Y+ NH  +T+ W DPR  
Sbjct: 2   MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
             LPPGW+  +   G+ YY +HNT+++TW  P   R+ 
Sbjct: 2   MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP---RMS 36

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
             LPPGW+  +   G+ YY +HNT+++TW  P   R+ 
Sbjct: 2   MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP---RMS 36

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
            LPPGW+   T +G  Y+ +HNT+++T+ DPR
Sbjct: 3   GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
             LPPGW+  +   G+ YY +HNT++S+W  P+
Sbjct: 2   MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           +E     G+ YY +HNT++S+W  P+
Sbjct: 9   DEYKTHNGKTYYYNHNTKTSTWTDPR 34

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 23/35 (65%), Positives = 24/35 (68%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
              PLPPGWEIR T  G  YFVDHN R+T F DPR
Sbjct: 4   GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 22/38 (57%), Positives = 24/38 (63%)

Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630
             G LP GWE R    GRVYFV+H NRTTQ+ DPR   
Sbjct: 4   GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSA 41

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGWE+R    GRVY+VDHN R+T +  P
Sbjct: 7   PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGWE+R    GRVY+VDHN R+T +  P
Sbjct: 7   PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
              PLPPGWEIR    GR Y+VDHN R++ +  P
Sbjct: 4   GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E      GR Y+VDHN R++ +  P
Sbjct: 13  EIRNTATGRVYFVDHNNRTTQFTDP 37

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           +    LP GWE  YT DG +YF++H T++T++  P 
Sbjct: 3   SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
             LP GWE      G  Y+++H T++T+W  P
Sbjct: 6   SGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
             LP GWE      G  Y+++H T++T+W  P
Sbjct: 6   SGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
                LP GWE     DG  YF+NH  +TT W  P 
Sbjct: 3   SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
                LP GWE      G +Y+++H T+++SW  P
Sbjct: 3   SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE     G +Y+++H T+++SW  P
Sbjct: 13  EEAYTADGIKYFINHVTQTTSWIHP 37

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYY 422
           +P    W     + G  YY D  + +S WE+P+          +   W       G  YY
Sbjct: 1   DPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYY 60

Query: 423 VDHNTRSTTWQRPN 436
            +  T  + W++P+
Sbjct: 61  YNTETGESRWEKPD 74

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGT 656
               W   +  +G  Y+ +  +  +QWE P     ++      +  +   W    +EDG 
Sbjct: 3   SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDL-----KKTAVKTVWVEGLSEDGF 57

Query: 657 RYFVDHNTRSTTFEDP 672
            Y+ +  T  + +E P
Sbjct: 58  TYYYNTETGESRWEKP 73

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRS 534
            E   + G  YY D  + +S WE+P+          +   W       G  YY +  T  
Sbjct: 8   VEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGE 67

Query: 535 TTWQRPN 541
           + W++P+
Sbjct: 68  SRWEKPD 74

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 58.1 bits (140), Expect = 6e-11
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 32/105 (30%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 464
           P    W       G  YY D  + ++ W++P   +    K                    
Sbjct: 2   PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-------------------- 41

Query: 465 QHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQ 509
                       +    V  E     G  YY +  T  S WE+P 
Sbjct: 42  ------------TAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 45/117 (38%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 569
           P    W       G  YY D  + ++ W++P   +    K                    
Sbjct: 2   PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-------------------- 41

Query: 570 QHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
                                     ++ + W   +  DG  Y+ N +   ++WE P
Sbjct: 42  -------------------------TAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQK 681
            +       LP GWE    E+G  +FVDH  + TT+ DPR     D  
Sbjct: 3   AKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN 50

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 66.4 bits (162), Expect = 4e-14
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPP 645
           G LP GWE+    +G+V+FV+H N+ T + DPR           D+ P  P
Sbjct: 10  GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFT------VDDNPTKP 54

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 403 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
              LP GWE   D  G+V++VDH  + TT+  P   RL  
Sbjct: 9   AGDLPYGWEQETDENGQVFFVDHINKRTTYLDP---RLAF 45

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
              LP GWE   D  G+V++VDH  + TT+  P   RL  
Sbjct: 9   AGDLPYGWEQETDENGQVFFVDHINKRTTYLDP---RLAF 45

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
            LP GWE   D  G+ ++VDH  + +++  P
Sbjct: 11  DLPYGWEQETDENGQVFFVDHINKRTTYLDP 41

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E++ D  G+ ++VDH  + +++  P
Sbjct: 17  EQETDENGQVFFVDHINKRTTYLDP 41

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 149 KPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD--- 204
            P+P+ ++ VD      +T  VKNT  PKWN+ + + V     I   + +H+   +    
Sbjct: 25  LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGA 84

Query: 205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDS 238
             +G  RL    +    +   + L   L  +N S
Sbjct: 85  GFLGCVRLLSNAISRLKDTGYQRL--DLCKLNPS 116

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 140 VGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHR 199
             G        +PYI L VD      T   + T  P W++EF   V     I   +    
Sbjct: 28  AVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDA 87

Query: 200 TFRRDCTIGEKRLNIYGVLAHYNGKCE-----------HLEITL 232
               D  +    +    +L + +   E           ++ I L
Sbjct: 88  PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDL 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 134 WNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILF 193
           W+   ++  +G  LL  +PY+ + VD      T   + T +P +NEEF   V+    +  
Sbjct: 46  WSLRHSLFKKGHQLL--DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLEL 103

Query: 194 RLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDL 234
            +        D  +    L    +L       +  E  +DL
Sbjct: 104 AVFHETPLGYDHFVANCTLQFQELLRTTGAS-DTFEGWVDL 143

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 397 SSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           SS    P   + LPPGWE         YYVDH  +   ++ P
Sbjct: 2   SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 502 SSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           SS    P   + LPPGWE         YYVDH  +   ++ P
Sbjct: 2   SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
            LP GWER    +   Y+V+H N+  Q+  P     
Sbjct: 13  GLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSS 48

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
              E LPPGWE  + +    YYVDH  + + +  P     G
Sbjct: 9   LEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSSG 49

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 49

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 620 TTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
           ++    P            +   LPPGWE   + +   Y+VDH  +   +  P  
Sbjct: 2   SSGSSGPL-----------EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 151 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRRD 204
           +PY+++Y+  D K    T+V + T  P +NE F   V    +    + F + D   F R 
Sbjct: 42  DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRH 101

Query: 205 CTIGEKRLNIYG-VLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP 251
             IG+  L+    +      +    +I       + +     S+   P
Sbjct: 102 DLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 150 PNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
            +PY++  +  +      + T + KNT  P +NE     V+P S+    +   ++D+   
Sbjct: 173 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 232

Query: 202 RRDCTIGEKRLNIY 215
             +  IG  R+   
Sbjct: 233 GHNEVIGVCRVGPE 246

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTI 207
             +PY++L    ++ K+         P+WNE F   V    + +  ++ D      D  +
Sbjct: 30  NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89

Query: 208 GEKRLNIYGVLA 219
           GE  + +  V  
Sbjct: 90  GEATIPLEPVFV 101

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPP 645
           G   +     S+   WER + P+   Y++NH+ +TT W+ P+               L  
Sbjct: 1   GPASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE--------LYQSLAD 52

Query: 646 GWEIRYT 652
              +R++
Sbjct: 53  LNNVRFS 59

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 445
             +   WE    P    YY++H T++T W  P    L     
Sbjct: 10  TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLA 51

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 550
             +   WE    P    YY++H T++T W  P    L     
Sbjct: 10  TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLA 51

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
               +   WE         YY++H T+++ W+ P+
Sbjct: 8   LSTSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Length = 261

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
              +   WE   + +   Y+++H T++T ++ P+
Sbjct: 9   STSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 148 LKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSII-----LFRLLDHRT 200
           +  +PYI++ +  + K+   TRV++ T  P ++E FT    PY+ I      F +L    
Sbjct: 42  MTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101

Query: 201 FRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSR 239
           F RD  IGE  +     L+        + +  ++++   
Sbjct: 102 FSRDDIIGEVLIP----LSGIELSEGKMLMNREIISGPS 136

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
             +PY+++++  D K    T+V + T  P +NE+FT  V    +    ++  + D   F 
Sbjct: 39  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98

Query: 203 RDCTIGEKRL 212
           +   IGE ++
Sbjct: 99  KHDIIGEFKV 108

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 90  ELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVG-GQGGGLL 148
           E ++ +  +    V +  R+          K         Y P    + TV   +   L 
Sbjct: 105 EFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT-AGKLTVVILEAKNLK 163

Query: 149 K------PNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFR 194
           K       +PY+++++     +     T + KNT  P +NE F+  V    I    ++  
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223

Query: 195 LLDHRTFRRDCTIGEKRLNIY 215
           +LD+    ++  IG+  +   
Sbjct: 224 VLDYDKIGKNDAIGKVFVGYN 244

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 152 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGEK 210
           P+  L +   +   T  V     P+WN+ FT  +   + ++   + D    +    +G+ 
Sbjct: 36  PFCLLELG-NDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKV 94

Query: 211 RLNI 214
            + +
Sbjct: 95  AIPL 98

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
             +PY+++++  D K    T+V + T  P +NE+FT  V    +    ++  + D   F 
Sbjct: 62  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121

Query: 203 RDCTIGEKRLNI 214
           +   IGE ++ +
Sbjct: 122 KHDIIGEFKVPM 133

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRD 204
            P+PY+EL++     + K TR   N   P WNE F  ++ P   +++   L+D      +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 205 CTIGEKRLNIYGV 217
             +G     +  +
Sbjct: 86  T-LGTATFTVSSM 97

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
             +PY+++++  D K    T+V + T  P +NE+FT  V    +    ++  + D   F 
Sbjct: 54  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113

Query: 203 RDCTIGEKRLNI 214
           +   IGE ++ +
Sbjct: 114 KHDIIGEFKVPM 125

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 150 PNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRR 203
            NPY+++ +  D KN K T V + T +P + E +T  +         +L  ++D   F R
Sbjct: 54  SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR 113

Query: 204 DCTIGE 209
            C IG+
Sbjct: 114 HCVIGK 119

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 371 EEPLPPGWEIRQD-TYGRRYYVDHNTRSSSWERPQPLPP 408
              LP GWE+R   +    YY +  TR S WE P     
Sbjct: 5   NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDM 43

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 406 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP---NSERLQHF 443
           LP GWE+R    +   YY +  TR + W+ P   + E L+ +
Sbjct: 8   LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMY 49

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 511 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP---NSERLQHF 548
           LP GWE+R    +   YY +  TR + W+ P   + E L+ +
Sbjct: 8   LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMY 49

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 596 SLPSGWERRVQP-DGRVYFVNHKNRTTQWEDPRTQGQE 632
            LP+GWE R        Y+ N   R ++WE P     E
Sbjct: 7   GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDME 44

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 151 NPYIELYV--DYKNPK-TTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRR 203
           + Y++  V     + +  T + K      W E   + ++   +    +   L     F R
Sbjct: 45  DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSR 104

Query: 204 DCTIGEKRLNI 214
               GE RL +
Sbjct: 105 HSVAGELRLGL 115

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 18/157 (11%)

Query: 152 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 205
           PY+ + +            T+ +K +  PKWNEE    V P    ILF + D     RD 
Sbjct: 31  PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDD 90

Query: 206 TIGEKRLNIYGV-LAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPL 264
            +G+  + +Y +   +   +  +      L   S  S     + +             P 
Sbjct: 91  FLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRL--------KMTYLPK 142

Query: 265 AQANTDVVVSHRSVLNEGIRARSRPPGSENTACPPPP 301
             +  +       +  E        P    T  P PP
Sbjct: 143 NGSEDENADQAEEL--EPGWVVLDQP-DAATHLPHPP 176

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRR 203
           KP+P + +       K T+ V N   P WNE     +        S +   + D  T  +
Sbjct: 26  KPDPIVSVIFK-DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84

Query: 204 DCTIGEKRLNI 214
           +  IG   + +
Sbjct: 85  NKLIGTATVAL 95

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRTF 201
             +P++++Y+  D K+   T+V +    P WNE F     PY  ++ R+L     D+  F
Sbjct: 46  TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF 105

Query: 202 RRDCTIGEKRLNI 214
            R+  IGE  + +
Sbjct: 106 SRNDPIGEVSIPL 118

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 152 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 205
           PY+ + +            T+ +K +  PKWNEE    V P    +LF + D     RD 
Sbjct: 43  PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDD 102

Query: 206 TIGEKRLNI 214
            +G+  + +
Sbjct: 103 FLGQVDVPL 111

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 55

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 356 PRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
           P  + S   P A   +  LP GW   QDT G  YY    T ++ WE P    P 
Sbjct: 2   PLGSDSFWNPNAFETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRASPS 54

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 55

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 392 DHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
           D     +++E    LP GW   +D  G  YY    T +T W+ P   
Sbjct: 6   DSFWNPNAFETDSDLPAGWMRVQDTSGT-YYWHIPTGTTQWEPPGRA 51

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 55

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 497 DHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
           D     +++E    LP GW   +D  G  YY    T +T W+ P   
Sbjct: 6   DSFWNPNAFETDSDLPAGWMRVQDTSGT-YYWHIPTGTTQWEPPGRA 51

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHR 199
            PNPY++ Y+       + + T++ + T  P +NE           +  R L        
Sbjct: 39  DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98

Query: 200 TFRRDCTIGE 209
           + R +  +G 
Sbjct: 99  SLRENFFLGG 108

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 371 EEPLPPGWEIRQ-DTYGRRYYVDHNTRSSSWERPQP 405
              LPP W IR   ++ + Y+++ +T  SSW+ P  
Sbjct: 5   STGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 636 IGADEPPLPPGWEIRYTE-DGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSF 694
           + +    LPP W IR +      YF++ +T  ++++ P      D++    V  AY   F
Sbjct: 1   MASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPY---GTDKE----VLNAYIAKF 53

Query: 695 RWKLSQFRYLCHHNVLPSHIKITV 718
           +    +        V  SH+ I  
Sbjct: 54  KNNGYKPLVNEDGQVRVSHLLIKN 77

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHR 199
             +PY++L++       N   T+ ++NT  P WNE           +  + L     D  
Sbjct: 49  LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108

Query: 200 TFRRDCTIGEKRLNI 214
            F  +  IGE R ++
Sbjct: 109 KFGHNEFIGETRFSL 123

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
             +PY+++++ YK+ +     T   K    P +NE F   +    +    I+  ++D   
Sbjct: 36  TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK 95

Query: 201 FRRDCTIGEKRLNIY 215
             R+  IG+  L+  
Sbjct: 96  LSRNDVIGKIYLSWK 110

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 371 EEPLPPGWEIRQ-DTYGRRYYVDHNTRSSSWERP 403
           EE LPPGWE     + GR YY +H T +S WERP
Sbjct: 7   EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 638 ADEPPLPPGWEIRYTEDGTR-YFVDHNTRSTTFEDPRPGVPKDQKGAYGVP 687
           ADE  LPPGWE   +    R Y+ +H T ++ +E P        K   G P
Sbjct: 5   ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 55

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 13/75 (17%)

Query: 152 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDH-----------R 199
           PY+ + V  K  K T+ +     P W E F     +    I  R+LD             
Sbjct: 40  PYVTVQVG-KTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRF 98

Query: 200 TFRRDCTIGEKRLNI 214
               D  +G+  + +
Sbjct: 99  KRESDDFLGQTIIEV 113

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 150 PNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
               I + V            TR +  +    +NE F V +S  ++    +   +     
Sbjct: 64  QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR 123

Query: 201 FRRDCTIGEKRLNI 214
              +  +G  ++++
Sbjct: 124 SHLEECLGGAQISL 137

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTF 201
             +PY++L +           T+ +K +  P+WNE F   +        +   + D    
Sbjct: 51  LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110

Query: 202 RRDCTIGEKRLNI 214
            R+  +G     I
Sbjct: 111 SRNDFMGSLSFGI 123

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
             +PY+++++     +     T + KNT  P +NE F+  V    I    ++  +LD+  
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104

Query: 201 FRRDCTIGEKRLNIY 215
             ++  IG+  +   
Sbjct: 105 IGKNDAIGKVFVGYN 119

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 150 PNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL--DHRTFRR 203
           P PY+++Y+  +      K TR+ + T  P + +      SP   +L  ++  D+     
Sbjct: 52  PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDH 111

Query: 204 DCTIGEKRLNI 214
            C +G  ++ +
Sbjct: 112 KCFMGVAQILL 122

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 150 PNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
            NPY++ Y+  D      + T + ++T  P ++E     +    +    + F +  H  F
Sbjct: 45  SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104

Query: 202 RRDCTIGEKRLNI 214
            R+  +GE  + +
Sbjct: 105 GRNTFLGEAEIQM 117

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRD 204
            P+PY+EL++     + K TR   N   P WNE F  ++ P   +++   L+D      D
Sbjct: 41  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MD 99

Query: 205 CTIGEKRLNI 214
            T+G     +
Sbjct: 100 ETLGTATFTV 109

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 18/83 (21%)

Query: 150 PNPYIELY-------------VDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL 196
            +P++++Y                +  + T+ V+ +  P+WN+           ++ + L
Sbjct: 39  SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98

Query: 197 -----DHRTFRRDCTIGEKRLNI 214
                D+  F  +  +GE  +++
Sbjct: 99  EVTVWDYDRFSSNDFLGEVLIDL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 150 PNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
            +PY+++ + +   +     T V K T    +NE F   +   S+    + F +LD    
Sbjct: 51  SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG 110

Query: 202 RRDCTIGE 209
            R+  IG 
Sbjct: 111 SRNEVIGR 118

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 150 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI---ILFRLLDH-RTF 201
            +PY+++ +         + T+ V +   P ++E F   V        +L  + +     
Sbjct: 47  CDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQS 106

Query: 202 RRDCTIGEKRLNI 214
           R+   IG     +
Sbjct: 107 RQSGLIGCMSFGV 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-04
 Identities = 77/586 (13%), Positives = 164/586 (27%), Gaps = 135/586 (23%)

Query: 2   EMTDDHYQLAQIIEIW--KLIAK------EALSNVVVSNEVVKKLCFTTKNMRFDFYPRL 53
           E  +  YQ   I+ ++    +        + +   ++S E +  +   +K+       RL
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTL-RL 67

Query: 54  MTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYR 113
              W +    EE  + F++    +   ++L              M  I  E  Q + + R
Sbjct: 68  F--WTLLSKQEEMVQKFVEEVLRI-NYKFL--------------MSPIKTEQRQPSMMTR 110

Query: 114 HY--TRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN 171
            Y   R+       V   Y     + +    Q    L+P   + +     + KT  V  +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALD 169

Query: 172 TYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEIT 231
                 + +       + I  F L      +   +          VL         ++  
Sbjct: 170 VCL---SYKV-QCKMDFKI--FWL----NLKNCNSPET-------VLEMLQKLLYQIDPN 212

Query: 232 LDLMNDSRVSPPLMSVEMPPLLRN---NTPHAASPLAQANTDVVVSHRSVLNE-GIRAR- 286
               +D   +  L    +   LR    + P+    L   N    V +    N   +  + 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKI 268

Query: 287 ---SRPPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSS----SSSAALP 339
              +R     +               +S++   H  + + ++  T               
Sbjct: 269 LLTTRFKQVTD--------------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 340 PIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVD--HNTRS 397
           P DL +E      TT+PR      +      +           D + +    D       
Sbjct: 315 PQDLPREV----LTTNPRRL---SIIAESIRDGL------ATWDNW-KHVNCDKLTTIIE 360

Query: 398 SSWERPQPLPPGWELRRDPRGRVYYVD-----------HNTRSTTWQRPNSERLQHFKHW 446
           SS      L P  E R+       +                 S  W       +    + 
Sbjct: 361 SSLNV---LEPA-EYRK------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN- 409

Query: 447 QGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWE 506
           +  +  +V +  +        + +             + + +    R  VDH     +++
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELK---------VKLENEYALHRSIVDHYNIPKTFD 460

Query: 507 RPQPLPPGWELRRDPRGRVY-YVDHNTRSTTWQRPNSERLQHFKHW 551
               +PP  +         Y ++ H+ ++      + ER+  F+  
Sbjct: 461 SDDLIPPYLD------QYFYSHIGHHLKNIE----HPERMTLFRMV 496

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 39

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
            LPPGW    D  G  YY    + ST WQRP
Sbjct: 8   GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 39

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
            LPPGW    D  G  YY    + ST WQRP
Sbjct: 8   GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 150 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRT 200
            NPY+++Y       KN + T+ VK T +PKWN+ F            R+L     D   
Sbjct: 39  RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 98

Query: 201 F--RRDCTIGEKRLNI 214
                   +GE  + +
Sbjct: 99  VREEESEFLGEILIEL 114

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 150 PNPY--IELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
            +P+  + L  D        T++ K T  P++NEEF   +    +    +   + D+   
Sbjct: 58  SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117

Query: 202 RRDCTIGE 209
           + +  IG 
Sbjct: 118 KSNDYIGG 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	994
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	100.0
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	100.0
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	100.0
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	100.0
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	100.0
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	100.0
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	99.89
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	99.88
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	99.88
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	99.87
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	99.87
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	99.86
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	99.79
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	99.78
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	99.77
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	99.75
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	99.68
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	99.66
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.65
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	99.6
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.57
2jxw_A	75	WW domain-binding protein 4; WW domain containing	99.55
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.54
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	99.52
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.5
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.5
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	99.5
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.49
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.49
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.48
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.47
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.45
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.43
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.41
2jxw_A	75	WW domain-binding protein 4; WW domain containing	99.41
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.38
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.32
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.32
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.31
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.31
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.31
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.31
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.31
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.29
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.29
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.29
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.28
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.28
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.27
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	99.27
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.27
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	99.26
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.25
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.24
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.24
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.24
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.23
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.22
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.2
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.19
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.18
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.18
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.18
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.17
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.16
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	99.15
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.1
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.08
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	99.08
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.07
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.07
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.06
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.04
1ymz_A	43	CC45; artificial protein, computational design, un	99.04
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.03
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.03
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.03
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	99.03
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.02
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	99.02
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.02
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	99.02
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	99.02
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.02
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.02
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.01
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.0
1ymz_A	43	CC45; artificial protein, computational design, un	99.0
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	99.0
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	98.99
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	98.98
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	98.98
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	98.98
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	98.97
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	98.97
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	98.97
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	98.96
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	98.95
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	98.95
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	98.94
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	98.94
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	98.93
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	98.93
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	98.93
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	98.92
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	98.9
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	98.9
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	98.89
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	98.89
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	98.88
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	98.86
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	98.86
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	98.84
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	98.83
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	98.82
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.78
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	98.77
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	98.75
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	98.75
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	98.75
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	98.74
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	98.65
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	98.65
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	98.64
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	98.64
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.62
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.6
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	98.59
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.57
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.55
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.46
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.39
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.32
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.31
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.25
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.2
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.2
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.19
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.12
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.12
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.08
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.01
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.0
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	97.95
2dk7_A	73	Transcription elongation regulator 1; structural g	97.95
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	97.92
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	97.79
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	97.79
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	97.01
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	96.99
2dk7_A	73	Transcription elongation regulator 1; structural g	96.97
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	94.91
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	94.55
3le4_A	79	Microprocessor complex subunit DGCR8; WW motif, di	89.83
3le4_A	79	Microprocessor complex subunit DGCR8; WW motif, di	86.72

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-83  Score=735.27  Aligned_cols=348  Identities=48%  Similarity=0.834  Sum_probs=314.1

Q ss_pred             CCCCCCCCcceeeccCcceeeeccCCCccccCCCCCCCCCCCCCccCCccccchhhhhhhhhhhhhhccCCCCCceEEEe
Q psy16327        639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITV  718 (994)
Q Consensus       639 ~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~~~~~~~~~~~~~f~~k~~~fr~~~~~~~~~~~~~i~V  718 (994)
                      ..+|||+|||++++.+|++|||||++++|||.|||.......     ...+|+|+|++|+.+||+++..+..+++++|+|
T Consensus         5 ~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~~~~~-----~~~~y~~~~~~k~~~f~~~~~~~~~~~~~~l~V   79 (429)
T 3olm_A            5 QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQ-----NVPQYKRDFRRKVIYFRSQPALRILPGQCHIKV   79 (429)
T ss_dssp             CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCCCCCS-----SCCHHHHHHHHHHHHHHSSGGGSCCSSCEEEEE
T ss_pred             cCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCccccc-----CcccccccchHHHHHHHHHHhhcCCCCceEEEE
Confidence            458999999999999999999999999999999998654332     234699999999999999988888899999999


Q ss_pred             cCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCc
Q psy16327        719 ARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNP  798 (994)
Q Consensus       719 ~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~  798 (994)
                      ||++||+|++++|++..+.+||++|+|+|.||+|+|+|||+||||++|++|||+|.||||+++.++++++++||.+.+++
T Consensus        80 rR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~  159 (429)
T 3olm_A           80 RRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINP  159 (429)
T ss_dssp             ETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGST
T ss_pred             ecchhHHHHHHHHHhcChHhcCcceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEec
Q psy16327        799 DHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEIL  878 (994)
Q Consensus       799 ~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~  878 (994)
                      +|+++|+|+|+|||+||+++.+++++|+++|||+|||++++++||+++||++|++|+||+++++++ .++++|+++.+.+
T Consensus       160 ~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~-~l~l~F~~~~~~~  238 (429)
T 3olm_A          160 EHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDG-VLDLTFSADDERF  238 (429)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSCCTT-TCCCBSEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCCHHH-hhcCceEEEeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999887 4899999999999


Q ss_pred             ceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--------
Q psy16327        879 GQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE--------  914 (994)
Q Consensus       879 g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG--------  914 (994)
                      |...++||+|||++|+||.+||+|||++++                +||                    +||        
T Consensus       239 g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~d  318 (429)
T 3olm_A          239 GEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIED  318 (429)
T ss_dssp             TEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHH
T ss_pred             CceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHH
Confidence            999999999999999999999999999988                255                    888        


Q ss_pred             ---eeeecC------e---------------------e---eeccCCCCCCCCCCCCCCCCcceeeeecCCCCCCcEEec
Q psy16327        915 ---RAIVRR------E---------------------P---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHT  961 (994)
Q Consensus       915 ---~t~y~~------q---------------------i---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~T  961 (994)
                         +|.|.+      .                     |   ++|+|++||+.|++++  |+++|+|++.+++++||+|||
T Consensus       319 l~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~--g~~~f~I~~~~~~~~LP~A~T  396 (429)
T 3olm_A          319 WKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSD--GPRRFTIEKAGEVQQLPKSHT  396 (429)
T ss_dssp             HHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETT--EECCEEEECCSCTTSCCEEEG
T ss_pred             HHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcC--CCceEEEeeCCCCCCCCcccc
Confidence               678865      0                     1   8999999999998776  778999999988899999999


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327        962 CFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE  994 (994)
Q Consensus       962 Cfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~  994 (994)
                      |||+|+||+|+|+|+||+||++||++++|||+|
T Consensus       397 CfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg~e  429 (429)
T 3olm_A          397 CFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE  429 (429)
T ss_dssp             GGTEEECCCCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ccCEeECCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999999999999999998

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-70  Score=623.91  Aligned_cols=301  Identities=47%  Similarity=0.835  Sum_probs=275.4

Q ss_pred             chhhhhhhhhhhhhhc-cCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHH
Q psy16327        691 ERSFRWKLSQFRYLCH-HNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHE  769 (994)
Q Consensus       691 ~~~f~~k~~~fr~~~~-~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~e  769 (994)
                      +|+|++|+.+||..+. ....+++++|+|||++||+|++++|+++.+.+||++|+|+|.||+|+|+|||+||||++|++|
T Consensus         1 ~r~f~~k~~~f~~~l~~~~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~e   80 (380)
T 1zvd_A            1 KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHE   80 (380)
T ss_dssp             CCSHHHHHHHHHHHHHHHSCSSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETTCCCSCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCCCCCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHH
Confidence            4899999999998744 355678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChH
Q psy16327        770 VLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPE  849 (994)
Q Consensus       770 l~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~  849 (994)
                      +++|.+|||.++++++|++++||.+.++++|+++|+|||++||+||+++.+++++|+++|||+|||++++++||+++||+
T Consensus        81 l~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~  160 (380)
T 1zvd_A           81 MLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPD  160 (380)
T ss_dssp             HTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHH
T ss_pred             HcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHH
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--
Q psy16327        850 FYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--  911 (994)
Q Consensus       850 l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--  911 (994)
                      +|++|+||+++++++ .++++|+++.+.+|...++||+|||++|+||.+||+|||++++                +||  
T Consensus       161 l~~sL~~ll~~d~~~-~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~  239 (380)
T 1zvd_A          161 LHNSLVWILENDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNE  239 (380)
T ss_dssp             HHHHHHHHHHSCCTT-TSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccc-cccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Confidence            999999999999887 4899999999999999999999999999999999999999988                255  


Q ss_pred             ------------------ccc-----------eeeecC------e---------------------e---eeccCCCCCC
Q psy16327        912 ------------------SCE-----------RAIVRR------E---------------------P---VCFSSLPGHA  932 (994)
Q Consensus       912 ------------------lcG-----------~t~y~~------q---------------------i---s~r~P~~Gf~  932 (994)
                                        +||           +|.|.+      .                     |   ++|+|++||+
T Consensus       240 vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~  319 (380)
T 1zvd_A          240 VIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFK  319 (380)
T ss_dssp             HSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGG
T ss_pred             HhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchh
Confidence                              788           788865      0                     1   8999999999


Q ss_pred             CCCCCCCCCCcceeeee-cCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327        933 VFPWEDLPNSWRFCIEK-VGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE  994 (994)
Q Consensus       933 ~l~~~~~~~~~~f~i~~-~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~  994 (994)
                      .|++++  |+++|+|++ .+++++||+||||||+|+||+|+|+|+|++||++||++++|||+|
T Consensus       320 ~L~~~~--gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~  380 (380)
T 1zvd_A          320 ALQGAA--GPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE  380 (380)
T ss_dssp             GCEETT--EECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred             hccccC--CCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCcC
Confidence            998877  888999994 556789999999999999999999999999999999999999997

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A

Probab=100.00  E-value=5.2e-70  Score=619.37  Aligned_cols=297  Identities=69%  Similarity=1.226  Sum_probs=282.8

Q ss_pred             chhhhhhhhhhhhhhccCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHH
Q psy16327        691 ERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEV  770 (994)
Q Consensus       691 ~~~f~~k~~~fr~~~~~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el  770 (994)
                      .|+|++|+.+||++++....+++++|+|+|++||+|++++|+++++.+||++|+|+|.||+|+|+|||+||||++|++|+
T Consensus         1 ~~~f~~k~~~f~~~~~~~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~gE~G~D~GG~~rEff~ll~~el   80 (374)
T 1nd7_A            1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV   80 (374)
T ss_dssp             CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhhcCCCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECCCCCcCCCccHHHHHHHHHHHH
Confidence            47999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHh
Q psy16327        771 LNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEF  850 (994)
Q Consensus       771 ~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l  850 (994)
                      ++|++|||++++.++|++++||.+..+++|+++|+|||++||+||++|.+++++|+++|||+|||++++++||+++||++
T Consensus        81 ~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l  160 (374)
T 1nd7_A           81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF  160 (374)
T ss_dssp             TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred             cCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHH
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc---
Q psy16327        851 YNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS---  911 (994)
Q Consensus       851 ~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~---  911 (994)
                      |++|+||+++++++++++++|+++.+.+|...++||+|||++|+||.+||+|||++++                +||   
T Consensus       161 ~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~v  240 (374)
T 1nd7_A          161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV  240 (374)
T ss_dssp             HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhh
Confidence            9999999999999888999999999999999999999999999999999999999988                255   


Q ss_pred             -----------------ccc-----------eeeecC------e---------------------e---eeccCCCCCCC
Q psy16327        912 -----------------SCE-----------RAIVRR------E---------------------P---VCFSSLPGHAV  933 (994)
Q Consensus       912 -----------------lcG-----------~t~y~~------q---------------------i---s~r~P~~Gf~~  933 (994)
                                       +||           +|.|.+      +                     |   ++|+|++||+.
T Consensus       241 ip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~  320 (374)
T 1nd7_A          241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE  320 (374)
T ss_dssp             SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred             CCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhh
Confidence                             788           678865      1                     1   89999999999


Q ss_pred             CCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy16327        934 FPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE  989 (994)
Q Consensus       934 l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~  989 (994)
                      |++++  |+++|+|++.+++++||+||||||+|+||+|+|+|+|++||++||+|++
T Consensus       321 L~~~~--gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e  374 (374)
T 1nd7_A          321 LMGSN--GPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             CEETT--EECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             ccccC--CCCceEEEeCCCCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            99887  8889999999999999999999999999999999999999999999974

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A

Probab=100.00  E-value=5.7e-69  Score=612.62  Aligned_cols=301  Identities=38%  Similarity=0.665  Sum_probs=269.9

Q ss_pred             chhhhhhhhhhhhhhcc---CCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHH
Q psy16327        691 ERSFRWKLSQFRYLCHH---NVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLS  767 (994)
Q Consensus       691 ~~~f~~k~~~fr~~~~~---~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~  767 (994)
                      .++|++|+.+||..+++   ...+++++|+|||++||+|+|++|++.++.+||++|+|+|.||+|+|+||++||||++|+
T Consensus        22 ~~~f~~k~~~F~~~l~~~~~~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~  101 (405)
T 3h1d_A           22 HMDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIIS  101 (405)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETTCCSCCCTTHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhhhcCCCCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECCCCCcCCChhHHHHHHHHH
Confidence            36999999999986653   234678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccC
Q psy16327        768 HEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID  847 (994)
Q Consensus       768 ~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vD  847 (994)
                      +|+|+|+||||++++++++++++||.+..+++|+++|+|+|++||+|||++.++|++|+++|||+|||++++++||+++|
T Consensus       102 ~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~D  181 (405)
T 3h1d_A          102 REMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED  181 (405)
T ss_dssp             HHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHC
T ss_pred             HHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhh
Confidence            99999999999999988999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc
Q psy16327        848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS  911 (994)
Q Consensus       848 p~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~  911 (994)
                      |++|++|+||+++++++++++++|+++.+.+|...++||+|||++|+||.+||+|||++++                +||
T Consensus       182 p~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf  261 (405)
T 3h1d_A          182 YHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGF  261 (405)
T ss_dssp             HHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888899999988888988899999999999999999999999988                255


Q ss_pred             --------------------ccc-----------eeeecC------ee------------------------eeccCCCC
Q psy16327        912 --------------------SCE-----------RAIVRR------EP------------------------VCFSSLPG  930 (994)
Q Consensus       912 --------------------lcG-----------~t~y~~------qi------------------------s~r~P~~G  930 (994)
                                          +||           +|.|.+      +|                        ++|+|++|
T Consensus       262 ~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~G  341 (405)
T 3h1d_A          262 YEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQG  341 (405)
T ss_dssp             HHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTC
T ss_pred             HHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCc
Confidence                                888           678864      11                        89999999


Q ss_pred             CCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHc-CCCCCC
Q psy16327        931 HAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE-TEGFGQ  993 (994)
Q Consensus       931 f~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~-~~GFg~  993 (994)
                      |+.|.+.+  ++++|+|++.+ ++++||+||||||+|+||+|+|+|+||+||++||+| ++|||+
T Consensus       342 f~~L~~~~--~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e~~~GFgl  404 (405)
T 3h1d_A          342 FAALEGMN--GIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGL  404 (405)
T ss_dssp             GGGCBCSS--SBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC-------
T ss_pred             cccccccC--CCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence            99998876  78899999875 468999999999999999999999999999999999 589997

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A

Probab=100.00  E-value=2.7e-67  Score=599.34  Aligned_cols=299  Identities=43%  Similarity=0.764  Sum_probs=275.0

Q ss_pred             CCccccchhhhhhhhhhhhhhccC-CCCCceEEEecCCccchHhHHHhhcCCc-cccCceeEEEEeCcccccCCchHHHH
Q psy16327        685 GVPKAYERSFRWKLSQFRYLCHHN-VLPSHIKITVARQTLFEDSYHQVMRLPA-YELRRRLYIIFRGEEGLDYGGVSREW  762 (994)
Q Consensus       685 ~~~~~~~~~f~~k~~~fr~~~~~~-~~~~~~~i~V~R~~i~eds~~~l~~~~~-~~l~~~l~V~F~GE~GiD~GG~~REf  762 (994)
                      +...||.++|++|+.+|+..+... ..+++++|+|||++||+|++++|+.++. ..||++|+|+|.||+|+|+|||+|||
T Consensus        13 ~~~~p~~~~f~~k~~~f~~~l~~~~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEf   92 (392)
T 2oni_A           13 NLYFQGSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREW   92 (392)
T ss_dssp             -CCSTTHHHHHHHHHHHHHHCCCCSSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-CCSSCHHHHHHHH
T ss_pred             ccCCCccccHHHHHHHHHHHHhcccCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECCCccccCCccHHHH
Confidence            456799999999999999877653 4678999999999999999999998764 45899999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCCCceeeeCCCCC-CCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChh
Q psy16327        763 FFLLSHEVLNPMYCLFEYANKNNYSLQINPASY-VNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMK  841 (994)
Q Consensus       763 f~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~-~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~  841 (994)
                      |++|++|+|+|.||||.+++.++|++++||.+. .+++|+++|+|||++||+||++|.+++++|+++|||+|||++++++
T Consensus        93 f~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~  172 (392)
T 2oni_A           93 FFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLN  172 (392)
T ss_dssp             HHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTH
T ss_pred             HHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHHHHHHHhCCCCCHH
Confidence            999999999999999999998999999999986 4788999999999999999999999999999999999999999999


Q ss_pred             hhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH-------------
Q psy16327        842 DIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG-------------  908 (994)
Q Consensus       842 DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~-------------  908 (994)
                      ||+++||++|++|+||+++++++  ++++|+++.+.+|...++||+|||++|+||.+||+|||++++             
T Consensus       173 Dl~~~Dp~l~~sL~~l~~~d~~~--l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~  250 (392)
T 2oni_A          173 DMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMN  250 (392)
T ss_dssp             HHHTTCHHHHHHHHHHHHSCCGG--GCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTSHHHHH
T ss_pred             HHHHhCHHHHHHHHHHhcCChhH--ceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHHHHHHhhhHHHHHH
Confidence            99999999999999999998875  788999999999999999999999999999999999999988             


Q ss_pred             ---hcc--------------------ccc-----------eeeecC-------e---------------------e---e
Q psy16327        909 ---SGS--------------------SCE-----------RAIVRR-------E---------------------P---V  923 (994)
Q Consensus       909 ---~G~--------------------lcG-----------~t~y~~-------q---------------------i---s  923 (994)
                         +||                    +||           +|.|.+       .                     |   +
T Consensus       251 af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs  330 (392)
T 2oni_A          251 AFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGT  330 (392)
T ss_dssp             HHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCC
Confidence               255                    888           678874       0                     1   8


Q ss_pred             eccCCCCCCCCCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHc
Q psy16327        924 CFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE  987 (994)
Q Consensus       924 ~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~  987 (994)
                      +|+|++||+.|.+++  |+++|+|++.+++++||+||||||+|+||+|+|+|+||+||++||++
T Consensus       331 ~rlP~~Gf~~L~~~~--gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n  392 (392)
T 2oni_A          331 SRVPMNGFAELYGSN--GPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN  392 (392)
T ss_dssp             SCCCTTCGGGCEETT--EECCCEEEECSCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred             CCCCCcchhhhcccC--CCCceEEEeCCCCCcCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence            999999999998877  88899999999899999999999999999999999999999999985

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A

Probab=100.00  E-value=1.4e-61  Score=546.66  Aligned_cols=270  Identities=30%  Similarity=0.539  Sum_probs=238.4

Q ss_pred             CCceEEEecCCccchHhHHHhh---cCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCce
Q psy16327        711 PSHIKITVARQTLFEDSYHQVM---RLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS  787 (994)
Q Consensus       711 ~~~~~i~V~R~~i~eds~~~l~---~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~  787 (994)
                      .+.++|+|||++|++|++++|.   ...+.+||++|+|+|.||+|+|+|||+||||++|++|+|+|++|||.++++++ .
T Consensus         3 ~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~-~   81 (358)
T 1c4z_A            3 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK-L   81 (358)
T ss_dssp             CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT-E
T ss_pred             CCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC-e
Confidence            4678999999999999999984   45678899999999999999999999999999999999999999999987655 5


Q ss_pred             eeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCcc-c
Q psy16327        788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDEC-G  866 (994)
Q Consensus       788 ~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~-~  866 (994)
                      +++||.+..   +.++|+|+|++||+||+++.+++++|+++|||+|||++++++||+++||++|++|+||++++.+.. .
T Consensus        82 ~~~np~s~~---~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~~~  158 (358)
T 1c4z_A           82 FWFNPSSFE---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDD  158 (358)
T ss_dssp             EEECTTCCS---CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHHH
T ss_pred             EeeCCcccc---chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhh
Confidence            689998854   346899999999999999999999999999999999999999999999999999999999754321 4


Q ss_pred             eeeEEEEEE-EecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc------------------
Q psy16327        867 LELYLSVDF-EILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS------------------  911 (994)
Q Consensus       867 l~l~F~~~~-~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~------------------  911 (994)
                      ++++|+++. +.+|...++||+|||++|+||.+||+|||++++                +||                  
T Consensus       159 l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~EL  238 (358)
T 1c4z_A          159 MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEI  238 (358)
T ss_dssp             TCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHH
T ss_pred             ccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHH
Confidence            889999985 678999999999999999999999999999987                254                  


Q ss_pred             ---ccc-----------eeeecC-------e---------------------e---eeccCCCCCCCCCCCCCCCCccee
Q psy16327        912 ---SCE-----------RAIVRR-------E---------------------P---VCFSSLPGHAVFPWEDLPNSWRFC  946 (994)
Q Consensus       912 ---lcG-----------~t~y~~-------q---------------------i---s~r~P~~Gf~~l~~~~~~~~~~f~  946 (994)
                         +||           +|.|.+       +                     |   ++|+|++||+.|         +|+
T Consensus       239 e~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l---------~~~  309 (358)
T 1c4z_A          239 ELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL---------KMI  309 (358)
T ss_dssp             HHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG---------CCE
T ss_pred             HHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccc---------eee
Confidence               788           788874       0                     1   899999999876         489


Q ss_pred             eeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327        947 IEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ  993 (994)
Q Consensus       947 i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~  993 (994)
                      |++.+ ++++||+||||||+|+||+|+|+|+||+||++||++++|||+
T Consensus       310 I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl  357 (358)
T 1c4z_A          310 IAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGM  357 (358)
T ss_dssp             EEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-----
T ss_pred             eecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence            98876 457999999999999999999999999999999999999997

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.1e-24  Score=243.93  Aligned_cols=124  Identities=37%  Similarity=0.597  Sum_probs=112.1

Q ss_pred             ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327          4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL   83 (994)
Q Consensus         4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L   83 (994)
                      ..+.+|...+|||+     |||++|+||.+|++            +||+++++|+|+++|++|++||++||++|||.++|
T Consensus       184 ~~~~~g~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L  246 (380)
T 1zvd_A          184 EHNAYGEIIQHELK-----PNGKSIPVNEENKK------------EYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLL  246 (380)
T ss_dssp             EEEETTEEEEEESS-----TTCCCCCCTTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGG
T ss_pred             eeecCCcEeEEecC-----CCCCCCccccccHH------------HHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHH
Confidence            34557777889995     88999999999999            99999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         84 KYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      ++|+|+||+.||||.++||++||++||.|+||+++|++|+|||++.  |++++|+.   |.++..|
T Consensus       247 ~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~r  312 (380)
T 1zvd_A          247 KTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSR  312 (380)
T ss_dssp             TTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSS
T ss_pred             hCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999973  56666666   4555544

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A

Probab=99.88  E-value=4.8e-24  Score=242.15  Aligned_cols=123  Identities=50%  Similarity=0.828  Sum_probs=111.0

Q ss_pred             cccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc
Q psy16327          5 DDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK   84 (994)
Q Consensus         5 ~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~   84 (994)
                      .+.+|...+|||+     |||++|+||.+|++            +||++|++|+|+++|++|++||++||++|||.++|+
T Consensus       185 ~~~~G~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~  247 (374)
T 1nd7_A          185 MEILGKVTSHDLK-----LGGSNILVTEENKD------------EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ  247 (374)
T ss_dssp             CCSSTTCCCEESS-----TTGGGCBCCTTTHH------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGT
T ss_pred             eccCCceeeEecC-----CCCcCceeccccHH------------HHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHh
Confidence            3456777889995     88999999999999            999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         85 YFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      +|+|+||+.||||.++||+++|++||.|+||+++|++|+|||++.  |++++|+.   |.++..|
T Consensus       248 ~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~r  312 (374)
T 1nd7_A          248 YFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCR  312 (374)
T ss_dssp             TCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred             cCCHHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999973  45666666   4554444

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A

Probab=99.88  E-value=2.3e-24  Score=245.63  Aligned_cols=121  Identities=31%  Similarity=0.555  Sum_probs=108.3

Q ss_pred             cCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCC
Q psy16327          7 HYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYF   86 (994)
Q Consensus         7 ~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f   86 (994)
                      .+|...+|||     +|||++|+||.+|++            +||++|++|+|+++|++|++||++||++|||.++|++|
T Consensus       211 ~~G~~~~veL-----~p~G~~i~VT~~Nk~------------eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF  273 (405)
T 3h1d_A          211 EFGVAEVRDL-----KPNGANILVTEENKK------------EYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIF  273 (405)
T ss_dssp             CEEECCGGGG-----SSCSSEEECCTTTHH------------HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTS
T ss_pred             cCCceeeEee-----cCCCCCCccchHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCC
Confidence            3455556677     589999999999999            99999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         87 DERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        87 ~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      +|+||+.||||.++||+++|+++|.|.||+++|++|+|||++.  |++++|+.   |.++..|
T Consensus       274 ~~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~r  336 (405)
T 3h1d_A          274 TEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSK  336 (405)
T ss_dssp             CHHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSC
T ss_pred             CHHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999973  56666666   4555444

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A

Probab=99.87  E-value=1e-23  Score=240.50  Aligned_cols=124  Identities=31%  Similarity=0.643  Sum_probs=111.5

Q ss_pred             ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327          4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL   83 (994)
Q Consensus         4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L   83 (994)
                      ..+.+|...+|||+     |||++|+||.+|++            |||++|++|+|+++|++|++||++||++|||.++|
T Consensus       203 ~~~~~G~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L  265 (392)
T 2oni_A          203 DEENFGQTYQVDLK-----PNGSEIMVTNENKR------------EYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLI  265 (392)
T ss_dssp             EEEETTEEEEEESS-----TTGGGCBCCTTTHH------------HHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHH
T ss_pred             eeecCCceeEEecC-----CCCccCccchhhHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhh
Confidence            34567788899995     88999999999999            99999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEE--ecCcccccc---ccccccC
Q psy16327         84 KYFDERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKN--TYQPKWNEE---FTVGGQG  144 (994)
Q Consensus        84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~--f~~~~e~~~---F~~~~~~  144 (994)
                      ++|+|+||+.||||.++||+++|+++|+|+ ||+++|++|+|||++  .|+++||+.   |.++..|
T Consensus       266 ~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~r  332 (392)
T 2oni_A          266 KIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSR  332 (392)
T ss_dssp             TTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred             hcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999 599999999999996  345666666   4555444

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-23  Score=241.74  Aligned_cols=125  Identities=34%  Similarity=0.620  Sum_probs=111.6

Q ss_pred             cccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccc
Q psy16327          3 MTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEW   82 (994)
Q Consensus         3 ~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~   82 (994)
                      +..+.+|...+|||+     |||++|+||.+|++            +||++|++|+|+++|++|++||++||++|||.++
T Consensus       233 ~~~~~~g~~~~veL~-----p~G~~i~VT~~Nk~------------eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~  295 (429)
T 3olm_A          233 ADDERFGEVVTVDLK-----PDGRNIEVTDGNKK------------EYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDL  295 (429)
T ss_dssp             EEEEETTEEEEEESS-----TTGGGSBCCTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHH
T ss_pred             EEeccCCceeeEecc-----CCCcccccCchhHH------------HHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHH
Confidence            334567778889995     88999999999999            9999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         83 LKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        83 L~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      |++|+|+||+.||||.++||++||++||.|.||+++|++|+|||++.  |++++|+.   |.++..|
T Consensus       296 L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~r  362 (429)
T 3olm_A          296 VTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSR  362 (429)
T ss_dssp             HTTSCHHHHHHHHTCBCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred             HhcCCHHHHHHHhcCCCCCCHHHHHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCC
Confidence            99999999999999999999999999999999999999999999973  45666555   4444443

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A

Probab=99.86  E-value=2.3e-23  Score=235.02  Aligned_cols=122  Identities=25%  Similarity=0.430  Sum_probs=109.5

Q ss_pred             ccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc-
Q psy16327          6 DHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK-   84 (994)
Q Consensus         6 ~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~-   84 (994)
                      +.+|...+|||+     |||++|+||.+|++            +||++|++|+|+++|++|++||++||++|||..+|. 
T Consensus       169 ~~~G~~~~~eL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~  231 (358)
T 1c4z_A          169 DLFGNPMMYDLK-----ENGDKIPITNENRK------------EFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKY  231 (358)
T ss_dssp             CTTTCCEEEESS-----TTTTTSBCCTTTHH------------HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCS
T ss_pred             ccCCCeeeeecC-----CCCcccccccccHH------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhc
Confidence            567888899995     88999999999999            999999999999999999999999999999999996 


Q ss_pred             CCCHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         85 YFDERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      +|+|+||+.||||.++||+++|++||+|+ ||+++|++|+|||++.  |++++|+.   |.++..|
T Consensus       232 lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~r  297 (358)
T 1c4z_A          232 LFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDR  297 (358)
T ss_dssp             CSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSS
T ss_pred             CCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCC
Confidence            89999999999999999999999999999 7999999999999973  45555555   4454444

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=99.79  E-value=5.7e-20  Score=165.29  Aligned_cols=83  Identities=77%  Similarity=1.385  Sum_probs=72.1

Q ss_pred             ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCcccc
Q psy16327        590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTF  669 (994)
Q Consensus       590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~  669 (994)
                      +.+..++||+||+++++++|++||+||.|++++|++||.........  ...+||.|||++.+.+|++|||||+++.|+|
T Consensus         6 ~~~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~--~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw   83 (88)
T 1tk7_A            6 HMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLI--NEGPLPPGWEIRYTAAGERFFVDHNTRRTTF   83 (88)
T ss_dssp             CSSTTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHH--HSCSSCSSCEEEEETTTEEEEEETTTTEEES
T ss_pred             CCCccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccc--cccccCCceEEEECCCCCEEEEECCCCcEeC
Confidence            34556799999999999999999999999999999999765322111  3579999999999999999999999999999


Q ss_pred             CCCCC
Q psy16327        670 EDPRP  674 (994)
Q Consensus       670 ~dPr~  674 (994)
                      +|||+
T Consensus        84 ~~Prl   88 (88)
T 1tk7_A           84 EDPRP   88 (88)
T ss_dssp             SSSCC
T ss_pred             CCCCC
Confidence            99985

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=99.78  E-value=3.8e-19  Score=160.61  Aligned_cols=82  Identities=45%  Similarity=0.876  Sum_probs=68.3

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCc
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGV  587 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~  587 (994)
                      ..+||+||+++++++||+||+||.|++|+|++|+....            +          .                  
T Consensus         7 ~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~------------~----------~------------------   46 (90)
T 2kxq_A            7 PPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRD------------L----------S------------------   46 (90)
T ss_dssp             CCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSS------------S----------C------------------
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCeEeeeccccccc------------c----------c------------------
Confidence            34799999999999999999999999999999985310            0          0                  


Q ss_pred             ccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        588 TEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       588 ~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                      .......++||.||+++++.+|++|||||.|++|+|+|||..
T Consensus        47 ~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~   88 (90)
T 2kxq_A           47 NINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   88 (90)
T ss_dssp             SCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             ccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence            001123468999999999999999999999999999999974

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=99.77  E-value=5.9e-19  Score=159.34  Aligned_cols=81  Identities=44%  Similarity=0.870  Sum_probs=69.7

Q ss_pred             CCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCC
Q psy16327        595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP  674 (994)
Q Consensus       595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~  674 (994)
                      .+||+||+++++++|++||+||.|++|+|++|+..............+||.|||++.+.+|++|||||+++.|+|+|||.
T Consensus         8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~   87 (90)
T 2kxq_A            8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL   87 (90)
T ss_dssp             CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence            57999999999999999999999999999999975432111112357999999999999999999999999999999997


Q ss_pred             C
Q psy16327        675 G  675 (994)
Q Consensus       675 ~  675 (994)
                      .
T Consensus        88 ~   88 (90)
T 2kxq_A           88 S   88 (90)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=99.75  E-value=8.7e-19  Score=157.54  Aligned_cols=67  Identities=48%  Similarity=1.073  Sum_probs=63.1

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC------------CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ------------PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~------------~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ...+||+||+++.+++||+|||||+|++|+|++|.            +||.||+++.+.+|++|||||+|++|+|++|.
T Consensus         9 ~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr   87 (88)
T 1tk7_A            9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   87 (88)
T ss_dssp             TTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred             ccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence            34579999999999999999999999999999993            68999999999999999999999999999996

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}

Probab=99.68  E-value=1.1e-17  Score=157.47  Aligned_cols=61  Identities=30%  Similarity=0.408  Sum_probs=41.5

Q ss_pred             eeccCC--CCCCCCCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327        923 VCFSSL--PGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ  993 (994)
Q Consensus       923 s~r~P~--~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~  993 (994)
                      ++|+|+  +||+.|        ++|+|.. +++++||+||||||+|+||+|+|+|+|++||++||++ +|||+
T Consensus        55 s~rlP~~~~Gf~~l--------~~~~i~~-~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf  117 (118)
T 3pt3_A           55 SPSLPASEEGFQPM--------PSITIRP-PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF  117 (118)
T ss_dssp             CC--------------------CEEEEES-CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred             CCCCCCcccCcccC--------CcEEEEC-CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence            999999  899876        3688873 5678999999999999999999999999999999998 99997

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=99.66  E-value=9.1e-17  Score=145.53  Aligned_cols=68  Identities=25%  Similarity=0.663  Sum_probs=62.9

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC---------CCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~---------lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      ...+||++|+++.+++||+||||+.|++|+|++|..         +|.+|+++.+.+||+||||+.|++|+|++|..
T Consensus         8 ~~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~   84 (92)
T 2l5f_A            8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKE   84 (92)
T ss_dssp             STTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHH
T ss_pred             cCCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchh
Confidence            345799999999999999999999999999999964         46899999999999999999999999999974

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.65  E-value=1.6e-16  Score=161.77  Aligned_cols=105  Identities=35%  Similarity=0.567  Sum_probs=89.1

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      +.++||||+|.+++ +++||+++++|+||+|||+|.|.+.+...|.|.|||+|.+++|++||.+.|+|.+++....+..+
T Consensus        54 ~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~  132 (173)
T 2nq3_A           54 WFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE  132 (173)
T ss_dssp             CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEES
T ss_pred             CCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcc
Confidence            44599999999988 59999999999999999999999998889999999999999999999999999999987666665


Q ss_pred             eEEEEeecCCC--CCCCCCeEEEecCCc
Q psy16327        227 HLEITLDLMND--SRVSPPLMSVEMPPL  252 (994)
Q Consensus       227 ~~~~~l~L~~~--~~~~~G~l~v~~~~~  252 (994)
                      .+.++++|++.  +....|+|.|.|++.
T Consensus       133 ~~~~~~~L~~~~~~~~~~G~L~v~l~~l  160 (173)
T 2nq3_A          133 EVVVTLQLGGDKEPTETIGDLSICLDGL  160 (173)
T ss_dssp             SEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             eeEEEEECccCCCCCcccEEEEEEEeee
Confidence            34455566544  334679999998764

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=99.60  E-value=3.4e-16  Score=136.66  Aligned_cols=61  Identities=36%  Similarity=0.820  Sum_probs=58.1

Q ss_pred             CCceEeecCCCCeeeeeCCCCcccccCCC---------CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        376 PGWEIRQDTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P~---------~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ++|+++.+++||+|||||+|++|+|++|.         .||.||+++.+++|++|||||.|++|+|++|.
T Consensus         2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~   71 (75)
T 1o6w_A            2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPA   71 (75)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCC
T ss_pred             CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCC
Confidence            57999999999999999999999999995         46889999999999999999999999999997

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.57  E-value=2.8e-15  Score=149.74  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhccc-CCccc
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY-NGKCE  226 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~-~~~~~  226 (994)
                      ..+||||+|.+++++.+||+++++|+||+|||+|.|.|.+...|.|.|||+|.+++|++||.+.|+|.++.... .+...
T Consensus        58 g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~  137 (157)
T 2fk9_A           58 QLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTF  137 (157)
T ss_dssp             CCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEE
T ss_pred             CCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcc
Confidence            45899999999877568999999999999999999999888899999999999999999999999999998652 22233


Q ss_pred             eEEEEeecCCCCCCCCCeEEEecC
Q psy16327        227 HLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       227 ~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      .  .+++|..     .|+|.|.+.
T Consensus       138 ~--~W~~L~~-----~G~i~l~l~  154 (157)
T 2fk9_A          138 E--GWVDLEP-----EGKVFVVIT  154 (157)
T ss_dssp             E--EEEECBS-----SCEEEEEEE
T ss_pred             c--EEEECCC-----CcEEEEEEE
Confidence            4  4455542     788887664

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.55  E-value=3.9e-15  Score=129.66  Aligned_cols=62  Identities=26%  Similarity=0.595  Sum_probs=58.2

Q ss_pred             CCCceEeecCCCCeeeeeCCCCcccccCCCC---------CCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        375 PPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~---------lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ..+|+++.+++||+||||+.|++|+|++|..         ++.+|+++.+++|++||||+.|++|+|++|.
T Consensus         4 ~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~   74 (75)
T 2jxw_A            4 KGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD   74 (75)
T ss_dssp             CCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred             CCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence            4689999999999999999999999999964         4789999999999999999999999999996

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.54  E-value=1.2e-14  Score=140.90  Aligned_cols=102  Identities=23%  Similarity=0.356  Sum_probs=81.8

Q ss_pred             CCCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCC---CcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR---DCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~---d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||+|.+++ .+.+||+++++|+||+|||+|.|.+.....|.|.|||+|.+++   |+|||.+.|+|.++.+...
T Consensus        23 ~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~  102 (132)
T 3pyc_A           23 FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKD  102 (132)
T ss_dssp             TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTT
T ss_pred             CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccc
Confidence            46799999999976 4689999999999999999999998877789999999999986   8999999999999865543


Q ss_pred             CccceEEEEeecCCCCC--CCCCeEEEecC
Q psy16327        223 GKCEHLEITLDLMNDSR--VSPPLMSVEMP  250 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~--~~~G~l~v~~~  250 (994)
                      ...  .++.|.....++  ...|+|.|.++
T Consensus       103 ~~~--~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A          103 TGY--QRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             SCC--EEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             cCc--EEEeeeecCCCCCCceeEEEEEEEE
Confidence            333  334444432222  46899999874

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=99.52  E-value=4.3e-15  Score=129.65  Aligned_cols=72  Identities=32%  Similarity=0.682  Sum_probs=61.9

Q ss_pred             CCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcccccc
Q psy16327        513 PGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDD  592 (994)
Q Consensus       513 ~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (994)
                      +||+++++++||+||+||.|++|+|++|+......                                             
T Consensus         2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~---------------------------------------------   36 (75)
T 1o6w_A            2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQE---------------------------------------------   36 (75)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHH---------------------------------------------
T ss_pred             CCCeEEECCCCCeEEEECCCCCEEeecchhhcccc---------------------------------------------
Confidence            48999999999999999999999999998642210                                             


Q ss_pred             cCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       593 ~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                      ....||.||+++.+++|++||+||.|++++|++|+..
T Consensus        37 ~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~   73 (75)
T 1o6w_A           37 ELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE   73 (75)
T ss_dssp             HHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             cccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence            0124789999999999999999999999999999864

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.50  E-value=1.8e-14  Score=140.49  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceE
Q psy16327        149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHL  228 (994)
Q Consensus       149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~  228 (994)
                      .+||||+|.+++....||+++++|+||+|||+|.|.+.....|.|.|||+|.+++|++||.+.|+|.++.....+ ....
T Consensus        37 ~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-~~~~  115 (136)
T 1gmi_A           37 LLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-HFED  115 (136)
T ss_dssp             CCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-EEEE
T ss_pred             CcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCCCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-CccE
Confidence            389999999987756899999999999999999998877789999999999999999999999999999765322 2233


Q ss_pred             EEEeecCCCCCCCCCeEEEecCC
Q psy16327        229 EITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       229 ~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      |  ++|+     ..|+|.|.+..
T Consensus       116 w--~~L~-----~~G~i~l~l~~  131 (136)
T 1gmi_A          116 W--IDLE-----PEGKVYVIIDL  131 (136)
T ss_dssp             E--EECB-----SSCEEEEEEEE
T ss_pred             E--EEcC-----CCeEEEEEEEE
Confidence            4  4554     27888887754

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.50  E-value=4.5e-14  Score=140.37  Aligned_cols=105  Identities=21%  Similarity=0.378  Sum_probs=83.4

Q ss_pred             CCCCCCeEEEeeccC-----CceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~-----~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +.++||||+|.+++.     +.+||+++++|+||+|||+|.|.+.+. ..|.|.|||+|.+++|++||.+.|+|.++...
T Consensus        38 ~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  117 (153)
T 3b7y_A           38 LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE  117 (153)
T ss_dssp             ---CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBC
T ss_pred             CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccC
Confidence            457899999999752     478999999999999999999988754 58999999999999999999999999999765


Q ss_pred             cCC---ccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        221 YNG---KCEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       221 ~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      ...   .....|+.|..........|+|.|.++.
T Consensus       118 ~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~  151 (153)
T 3b7y_A          118 NPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY  151 (153)
T ss_dssp             CTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred             CCcccccccccccccccccCCCCcceEEEEEEEE
Confidence            432   1234667666555445678999998864

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=131.60  Aligned_cols=76  Identities=21%  Similarity=0.598  Sum_probs=64.8

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcc
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVT  588 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~  588 (994)
                      .+||+||+++++++||+||+||.|++++|++|.......                                         
T Consensus        10 ~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~-----------------------------------------   48 (92)
T 2l5f_A           10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA-----------------------------------------   48 (92)
T ss_dssp             TBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHH-----------------------------------------
T ss_pred             CCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccc-----------------------------------------
Confidence            379999999999999999999999999999998532100                                         


Q ss_pred             cccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        589 EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       589 ~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                          ...+||.+|+++.+.+|++||+||.|++++|++|+..
T Consensus        49 ----e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~   85 (92)
T 2l5f_A           49 ----EQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL   85 (92)
T ss_dssp             ----HHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHH
T ss_pred             ----cccccccceEEEECCCCCEEEEECCCCCeeccCchhH
Confidence                0014678999999999999999999999999999864

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.9e-14  Score=137.90  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      .++||||+|.++++ ++||+++++++||+|||+|.|.+.     ....|.|.|||+|.+++|++||.+.|+|.++...  
T Consensus        25 g~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~--  101 (140)
T 2dmh_A           25 GKPDPIVSVIFKDE-KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD--  101 (140)
T ss_dssp             SCCCEEEEEECSSC-EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSS--
T ss_pred             CCCCeEEEEEECCE-eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccC--
Confidence            57999999999775 899999999999999999999886     3579999999999999999999999999998543  


Q ss_pred             CccceEEEE-eecCCCCC-CCCCeEEEecCCc
Q psy16327        223 GKCEHLEIT-LDLMNDSR-VSPPLMSVEMPPL  252 (994)
Q Consensus       223 ~~~~~~~~~-l~L~~~~~-~~~G~l~v~~~~~  252 (994)
                       .....|+. +.|.+..+ ...|+|.|.+...
T Consensus       102 -~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~  132 (140)
T 2dmh_A          102 -QSRSLPYKLISLLNEKGQDTGATIDLVIGYD  132 (140)
T ss_dssp             -SCEEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred             -CCceeEEeeeeccCCCCCCCCCEEEEEEEEE
Confidence             22344555 44655443 4569999988764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.49  E-value=3.3e-14  Score=137.99  Aligned_cols=99  Identities=15%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC  225 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~  225 (994)
                      +.++||||+|.++++ ++||+++++++||+|||+|.|.+.+ ...|.|.|||+|.+++|++||.+.|+|.++...   . 
T Consensus        31 ~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~---~-  105 (133)
T 2ep6_A           31 SGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG---Q-  105 (133)
T ss_dssp             SSCCCEEEEEEETTE-EEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS---C-
T ss_pred             CCCcCeEEEEEECCE-EEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCC---C-
Confidence            467999999999775 8899999999999999999998865 568999999999999999999999999998542   2 


Q ss_pred             ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        226 EHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       226 ~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                       ..|+.|......+...|+|.|.++.
T Consensus       106 -~~w~~L~~~~~~~~~~G~i~l~i~~  130 (133)
T 2ep6_A          106 -PNCYVLKNKDLEQAFKGVIYLEMDL  130 (133)
T ss_dssp             -CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             -ceEEEeecCCCCCccceEEEEEEEE
Confidence             3445444333344678999888753

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.48  E-value=4.9e-14  Score=137.18  Aligned_cols=100  Identities=18%  Similarity=0.246  Sum_probs=82.4

Q ss_pred             CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +.++||||+|.++++ ++||++++ +++||+|||+|.|.+.+ ...|.|+|||+|.+++|++||.+.|+|.+++...  .
T Consensus        28 ~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~  104 (136)
T 1wfj_A           28 LNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--S  104 (136)
T ss_dssp             SCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHS--E
T ss_pred             CCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCC--C
Confidence            467999999999775 78999998 99999999999998876 5699999999999999999999999999996542  2


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMPPL  252 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~~  252 (994)
                      ....|+.|.   .++...|+|.|.+...
T Consensus       105 ~~~~w~~L~---~~~~~~G~i~l~l~~~  129 (136)
T 1wfj_A          105 IPPTAYNVV---KDEEYKGEIWVALSFK  129 (136)
T ss_dssp             EEEEEEEEE---ETTEEEEEEEEEEEEE
T ss_pred             CCcEEEEee---cCCccCEEEEEEEEEE
Confidence            334455544   3445689999988764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.47  E-value=1e-13  Score=137.06  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=81.6

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-----------RRDCTIGEKRLNI  214 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~-----------~~d~~lG~~~i~l  214 (994)
                      +.++||||+|.+++ +++||+++++|+||.|||+|.|.+. +...|.|.|||+|.+           ++|++||.+.|+|
T Consensus        35 ~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l  113 (148)
T 3kwu_A           35 TGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV  113 (148)
T ss_dssp             TSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEG
T ss_pred             CCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEH
Confidence            56799999999955 5899999999999999999999885 456999999999986           8899999999999


Q ss_pred             hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      .++.     .....|+.|..........|+|.|.++.
T Consensus       114 ~~l~-----~~~~~w~~L~~~~~~~~~~G~i~l~l~~  145 (148)
T 3kwu_A          114 RTLS-----GEMDVWYNLDKRTDKSAVSGAIRLHISV  145 (148)
T ss_dssp             GGCC-----SEEEEEEECBCSSTTCCCCCEEEEEEEE
T ss_pred             HHCc-----CCCCEEEEcccCCCCCCCceEEEEEEEE
Confidence            9982     1234566666555555678999988764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.45  E-value=1.1e-13  Score=141.11  Aligned_cols=107  Identities=22%  Similarity=0.374  Sum_probs=82.3

Q ss_pred             CCCCCCeEEEeeccC-----CceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g~-----~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      +.++||||+|.+++.     +++||+++++++||.|||.|.|.+.+. ..|.|.|||+|++++|+|||.+.|+|.++...
T Consensus        26 ~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~  105 (176)
T 3m7f_B           26 LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTE  105 (176)
T ss_dssp             CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC
T ss_pred             CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHcccc
Confidence            467999999999763     367999999999999999999988765 59999999999999999999999999999765


Q ss_pred             cCC---ccceEEEEeecCCCCCCCCCeEEEecCCcC
Q psy16327        221 YNG---KCEHLEITLDLMNDSRVSPPLMSVEMPPLL  253 (994)
Q Consensus       221 ~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~~~~  253 (994)
                      ...   .....|+.|..+.......|+|.|.+....
T Consensus       106 ~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B          106 NPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  141 (176)
T ss_dssp             ------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence            322   111256777666666667899999997753

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.43  E-value=2.1e-13  Score=130.73  Aligned_cols=94  Identities=23%  Similarity=0.503  Sum_probs=74.5

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||+|.+++  .+++||+++++++||+|||+|.|.+.  ....|.|.|||+|.++ |++||.+.|+|+++..   
T Consensus        24 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~---   99 (126)
T 1rlw_A           24 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKV---   99 (126)
T ss_dssp             HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSC-CEEEEEEEEEGGGSCT---
T ss_pred             CCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCC-CceeEEEEEEHHHccC---
Confidence            46799999999986  46899999999999999999999884  3569999999999985 8899999999999853   


Q ss_pred             CccceEEEEeecCCCCCCCCCeEEEec
Q psy16327        223 GKCEHLEITLDLMNDSRVSPPLMSVEM  249 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~  249 (994)
                      +....  .+++|..   ...|+|.|.+
T Consensus       100 ~~~~~--~~~~L~~---~~~g~i~~~l  121 (126)
T 1rlw_A          100 GEKKE--VPFIFNQ---VTEMVLEMSL  121 (126)
T ss_dssp             TCEEE--EEEEETT---TEEEEEEEEE
T ss_pred             CCcEE--EEEEcCC---CceEEEEEEE
Confidence            23333  4555553   3345666655

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.41  E-value=1.2e-13  Score=133.13  Aligned_cols=103  Identities=14%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             CCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        148 LKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       148 ~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      .++||||+|.+.|. ++||++++ +++||+|||.|++.+.    ..+.|.|.|+|++++++|.+||++.|+|.+|.... 
T Consensus        35 g~~Dp~akv~FRg~-k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~-  112 (144)
T 3l9b_A           35 GRADRIAKVTFRGQ-SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN-  112 (144)
T ss_dssp             SCEEEEEEEEETTE-EEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHS-
T ss_pred             CCCCCeEEEEEecc-ceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCC-
Confidence            47999999999887 99999998 6999999999999664    46799999999999999999999999999998873 


Q ss_pred             CccceEEEEeecCCCCCCCC-CeEEEecCCcCCCC
Q psy16327        223 GKCEHLEITLDLMNDSRVSP-PLMSVEMPPLLRNN  256 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~-G~l~v~~~~~~~~~  256 (994)
                          .++++..|.+.+.... ++|.+++++.+++|
T Consensus       113 ----~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A          113 ----RVEVSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             ----EEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             ----eEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence                4557788888887654 68999999877655

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.41  E-value=3.4e-13  Score=117.35  Aligned_cols=71  Identities=20%  Similarity=0.471  Sum_probs=59.8

Q ss_pred             CCCceeeeCCCCCeEEEeCCCCcccccCCchhhhhhccccccccccccccCCccccCCCCCcCCCCCCccccCCCccccc
Q psy16327        407 PPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED  486 (994)
Q Consensus       407 p~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (994)
                      ..+|+++.+++|++||||+.|++|+|++|....                       .+                      
T Consensus         4 ~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~-----------------------~~----------------------   38 (75)
T 2jxw_A            4 KGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ-----------------------GD----------------------   38 (75)
T ss_dssp             CCCEEEEEETTTEEEEEETTTTEEECSCCSSCS-----------------------SC----------------------
T ss_pred             CCCcEEEECCCCCEEEEECCCCCEeecCCCccc-----------------------cc----------------------
Confidence            468999999999999999999999999997210                       00                      


Q ss_pred             ccccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        487 ADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       487 ~~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                                         ....++|.+|+++.+++||+||+|+.|++++|++|+
T Consensus        39 -------------------~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~   74 (75)
T 2jxw_A           39 -------------------LKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD   74 (75)
T ss_dssp             -------------------CSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred             -------------------ccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence                               001257899999999999999999999999999996

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.38  E-value=3.5e-13  Score=131.81  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEee---ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYV---DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~---~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ..++||||+|.+   ++..++||+|+++|+||+|||+|.|.+..    ...|.|.|||+|++++|++||++.|+|.++.
T Consensus        41 ~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~  119 (138)
T 1wfm_A           41 DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS
T ss_pred             CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEccccc
Confidence            567999999999   34446899999999999999999998864    3589999999999999999999999999984

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.32  E-value=2.7e-12  Score=124.78  Aligned_cols=73  Identities=21%  Similarity=0.355  Sum_probs=64.3

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEE-ec----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~-v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..++||||+|.+.    +..++||+++++|+||+|||+|.|. +.    ....|.|.|||+|.+++|++||.+.|+|.++
T Consensus        37 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l  116 (134)
T 2b3r_A           37 GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF  116 (134)
T ss_dssp             SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGS
T ss_pred             CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhc
Confidence            4578999999982    2457899999999999999999998 65    3479999999999999999999999999998


Q ss_pred             hc
Q psy16327        218 LA  219 (994)
Q Consensus       218 ~~  219 (994)
                      ..
T Consensus       117 ~~  118 (134)
T 2b3r_A          117 NL  118 (134)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3e-12  Score=125.39  Aligned_cols=84  Identities=25%  Similarity=0.430  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+.  +.+++||+++++|+||+|||+|.|.+.+     ...|.|.|||+|++++|++||.+.|+|.++..
T Consensus        44 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~  123 (141)
T 2d8k_A           44 SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL  123 (141)
T ss_dssp             SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT
T ss_pred             CCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC
Confidence            4579999999994  3558899999999999999999997532     57899999999999999999999999999855


Q ss_pred             ccCCccceEEEEee
Q psy16327        220 HYNGKCEHLEITLD  233 (994)
Q Consensus       220 ~~~~~~~~~~~~l~  233 (994)
                      .   .....|+.|.
T Consensus       124 ~---~~~~~W~~L~  134 (141)
T 2d8k_A          124 T---QMQTFWKDLK  134 (141)
T ss_dssp             T---SCEEEEECCE
T ss_pred             C---CCccEEEECc
Confidence            3   2334444443

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.31  E-value=7.4e-13  Score=132.26  Aligned_cols=72  Identities=15%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             CCCCCCeEEEeecc-----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY-----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g-----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..++||||+|.+.+     ..++||+++++|+||+|||+|.|.+..    ...|.|.|||+|++++|++||++.|+|.++
T Consensus        61 ~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l  140 (155)
T 2z0u_A           61 QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV  140 (155)
T ss_dssp             SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred             CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence            46799999999954     126899999999999999999998864    468999999999999999999999999998


Q ss_pred             h
Q psy16327        218 L  218 (994)
Q Consensus       218 ~  218 (994)
                      .
T Consensus       141 ~  141 (155)
T 2z0u_A          141 C  141 (155)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.31  E-value=1.7e-12  Score=125.86  Aligned_cols=71  Identities=14%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeee-cCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVV-KNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~-k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ..++||||+|.  ++ ..||+++ ++++||+|||+|.|.+.. ...|.|+|||+| +.+|++||.+.|+|.++....
T Consensus        20 ~g~~DPYv~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           20 QEKFNTYVTLK--VQ-NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCS
T ss_pred             CCCcCeEEEEE--ec-CEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcC
Confidence            34689999999  33 5566555 479999999999998864 468999999999 999999999999999987543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=126.77  Aligned_cols=73  Identities=27%  Similarity=0.501  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+..  .+++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus        51 ~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~  129 (147)
T 2enp_A           51 MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL  129 (147)
T ss_dssp             TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT
T ss_pred             CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC
Confidence            45799999999953  458899999999999999999998864    35899999999999999999999999999854

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.31  E-value=3.1e-12  Score=126.57  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+.+    ..++||+++++|+||+|||+|.|.+..   ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus        49 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~  128 (149)
T 1a25_A           49 NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK  128 (149)
T ss_dssp             TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTT
T ss_pred             CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCc
Confidence            56799999999974    558999999999999999999998865   35899999999999999999999999999965


Q ss_pred             c
Q psy16327        220 H  220 (994)
Q Consensus       220 ~  220 (994)
                      .
T Consensus       129 ~  129 (149)
T 1a25_A          129 A  129 (149)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.31  E-value=2.2e-12  Score=126.60  Aligned_cols=73  Identities=26%  Similarity=0.411  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+  ++.+++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+++|++||++.|+|.++..
T Consensus        52 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~  130 (143)
T 3f04_A           52 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF  130 (143)
T ss_dssp             GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCT
T ss_pred             CCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccC
Confidence            457999999999  34568999999999999999999998763    37999999999999999999999999999843

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.29  E-value=5.1e-12  Score=123.46  Aligned_cols=73  Identities=29%  Similarity=0.454  Sum_probs=63.9

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEe-cC----CCeEEEEEecCCCCCC--CcccceEEeehh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-SP----YSIILFRLLDHRTFRR--DCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v-~~----~~~l~~~V~D~d~~~~--d~~lG~~~i~l~  215 (994)
                      +.++||||+|.+.    +.+++||+++++|+||+|||+|.|.+ ..    ...|.|.|||+|.+++  |++||.+.|+|.
T Consensus        39 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~  118 (141)
T 1v27_A           39 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE  118 (141)
T ss_dssp             SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGG
T ss_pred             CCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEcc
Confidence            4678999999992    45689999999999999999999974 32    3699999999999987  999999999999


Q ss_pred             hhhc
Q psy16327        216 GVLA  219 (994)
Q Consensus       216 ~~~~  219 (994)
                      ++..
T Consensus       119 ~l~~  122 (141)
T 1v27_A          119 TALL  122 (141)
T ss_dssp             GCCC
T ss_pred             ccCC
Confidence            9865

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.29  E-value=3.3e-12  Score=124.61  Aligned_cols=85  Identities=26%  Similarity=0.495  Sum_probs=69.1

Q ss_pred             CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      .++||||+|.+.  +.+++||+++++|+||+|||+|.|. +..    ...|.|.|||+|.+++|++||.+.|+|.++...
T Consensus        42 ~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A           42 MTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             TBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCC
Confidence            569999999995  3568999999999999999999994 653    359999999999999999999999999998543


Q ss_pred             cCCccceEEEEeecCC
Q psy16327        221 YNGKCEHLEITLDLMN  236 (994)
Q Consensus       221 ~~~~~~~~~~~l~L~~  236 (994)
                      . +   ....+++|++
T Consensus       122 ~-~---~~~~~~~l~~  133 (138)
T 1ugk_A          122 E-G---KMLMNREIIS  133 (138)
T ss_dssp             T-C---CEEEEEECBS
T ss_pred             C-C---cchhhhhhhc
Confidence            2 1   2234555554

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.29  E-value=2.4e-12  Score=126.14  Aligned_cols=74  Identities=24%  Similarity=0.399  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..++||||+|.+.+    ..++||+++++|+||+|||+|.|. +..    ...|.|.|||+|.+++|++||.+.|+|.++
T Consensus        47 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l  126 (142)
T 2chd_A           47 NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL  126 (142)
T ss_dssp             TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGC
T ss_pred             CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence            45789999999965    357899999999999999999997 543    368999999999999999999999999998


Q ss_pred             hcc
Q psy16327        218 LAH  220 (994)
Q Consensus       218 ~~~  220 (994)
                      ...
T Consensus       127 ~~~  129 (142)
T 2chd_A          127 KAN  129 (142)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            543

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.28  E-value=6.1e-12  Score=124.91  Aligned_cols=73  Identities=25%  Similarity=0.371  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+.  +.+++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus        60 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~  138 (152)
T 1rsy_A           60 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF  138 (152)
T ss_dssp             TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCC
T ss_pred             CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccC
Confidence            4678999999994  4568899999999999999999998763    57999999999999999999999999999843

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.28  E-value=2.6e-12  Score=123.67  Aligned_cols=82  Identities=28%  Similarity=0.394  Sum_probs=63.4

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEe-c----CCCeEEEEEecCCCCCC--CcccceEEeehh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-S----PYSIILFRLLDHRTFRR--DCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v-~----~~~~l~~~V~D~d~~~~--d~~lG~~~i~l~  215 (994)
                      +.++||||+|.+.    +..++||+++++|+||+|||+|.|.+ .    ....|.|.|||+|.+++  |++||.+.|+|.
T Consensus        36 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~  115 (129)
T 2bwq_A           36 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE  115 (129)
T ss_dssp             SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred             CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEcc
Confidence            4578999999992    35589999999999999999999974 3    24699999999999987  999999999999


Q ss_pred             hhhcccCCccceEEEEe
Q psy16327        216 GVLAHYNGKCEHLEITL  232 (994)
Q Consensus       216 ~~~~~~~~~~~~~~~~l  232 (994)
                      ++....    ...|+.|
T Consensus       116 ~l~~~~----~~~W~~L  128 (129)
T 2bwq_A          116 TALLDD----EPHWYKL  128 (129)
T ss_dssp             GCCCSS----CEEEEEC
T ss_pred             ccCCCc----CCccEEC
Confidence            986531    4455544

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.9e-13  Score=124.66  Aligned_cols=62  Identities=39%  Similarity=0.652  Sum_probs=56.2

Q ss_pred             CCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCCC
Q psy16327        596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG  675 (994)
Q Consensus       596 ~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~  675 (994)
                      ..|.|||++.++.|+||||||.+.                   ...+||+|||+++|.+|++|||||++++|+|+|||.+
T Consensus        45 r~p~~we~~~~~~~lV~~vn~~~d-------------------~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~  105 (109)
T 3l4h_A           45 RDARNFERYQHNRDLVNFINMFAD-------------------TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP  105 (109)
T ss_dssp             HCTHHHHHHTTCHHHHHHHHTTCC-------------------TTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred             cCCcChhhhcCcCCceEEeccCCC-------------------CCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence            468999999999999999999852                   2468999999999999999999999999999999985


Q ss_pred             C
Q psy16327        676 V  676 (994)
Q Consensus       676 ~  676 (994)
                      .
T Consensus       106 ~  106 (109)
T 3l4h_A          106 L  106 (109)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.27  E-value=3.7e-12  Score=125.88  Aligned_cols=74  Identities=19%  Similarity=0.395  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ..++||||+|.+.+    ..++||+++++|+||+|||+|.|.+...    ..|.|.|||+|.+++|++||.+.|+|.++.
T Consensus        42 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~  121 (148)
T 3fdw_A           42 KKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK  121 (148)
T ss_dssp             TTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHH
T ss_pred             CCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEccccc
Confidence            46799999999963    2368999999999999999999988753    369999999999999999999999999996


Q ss_pred             cc
Q psy16327        219 AH  220 (994)
Q Consensus       219 ~~  220 (994)
                      ..
T Consensus       122 ~~  123 (148)
T 3fdw_A          122 LD  123 (148)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.26  E-value=7.8e-12  Score=101.82  Aligned_cols=50  Identities=38%  Similarity=0.845  Sum_probs=43.1

Q ss_pred             ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCC
Q psy16327        590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPG  646 (994)
Q Consensus       590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~g  646 (994)
                      +.+..++||+|||++++.+|++|||||.|++|+|+|||....       ...+||.|
T Consensus         8 ~~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~~~-------~~~plp~g   57 (57)
T 2ysd_A            8 AEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK-------QQSGPSSG   57 (57)
T ss_dssp             CCSCCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTCSS-------CCCSCCCC
T ss_pred             CCCCCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCccc-------cCCCCCCC
Confidence            345667999999999999999999999999999999998654       24688876

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.25  E-value=6.5e-12  Score=124.92  Aligned_cols=73  Identities=18%  Similarity=0.269  Sum_probs=63.4

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEec---CCCeEEEEEecCCCCCC-CcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHRTFRR-DCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~---~~~~l~~~V~D~d~~~~-d~~lG~~~i~l~~~~  218 (994)
                      ..++||||+|.+.+    ..++||+++++|+||+|||+|.|.+.   ....|.|.|||+|.+.+ |++||.+.|+|.++.
T Consensus        44 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~  123 (153)
T 3fbk_A           44 PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL  123 (153)
T ss_dssp             SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHT
T ss_pred             CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhc
Confidence            35789999999942    45799999999999999999999883   23579999999999987 999999999999996


Q ss_pred             c
Q psy16327        219 A  219 (994)
Q Consensus       219 ~  219 (994)
                      .
T Consensus       124 ~  124 (153)
T 3fbk_A          124 T  124 (153)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.24  E-value=3.2e-12  Score=125.25  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             CCCCCCeEEEeeccC-------------CceeeeeecCCCCCCcceEEEEE-ec----CCCeEEEEEecCCCCCCCcccc
Q psy16327        147 LLKPNPYIELYVDYK-------------NPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRLLDHRTFRRDCTIG  208 (994)
Q Consensus       147 f~~~dPyv~v~~~g~-------------~~~kT~v~k~tlnP~Wne~f~~~-v~----~~~~l~~~V~D~d~~~~d~~lG  208 (994)
                      +.++||||+|.+.+.             .++||+++++|+||+|||+|.|. +.    ....|.|.|||+|.+++|++||
T Consensus        36 ~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG  115 (142)
T 1rh8_A           36 NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLG  115 (142)
T ss_dssp             SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEE
T ss_pred             CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEE
Confidence            567999999999764             25799999999999999999996 54    3569999999999999999999


Q ss_pred             eEEeehhhhhcccCCccceEEEEee
Q psy16327        209 EKRLNIYGVLAHYNGKCEHLEITLD  233 (994)
Q Consensus       209 ~~~i~l~~~~~~~~~~~~~~~~~l~  233 (994)
                      .+.|+|.++....   ....|+.|.
T Consensus       116 ~~~i~l~~l~~~~---~~~~W~~L~  137 (142)
T 1rh8_A          116 EVLIDLSSTSHLD---NTPRWYPLK  137 (142)
T ss_dssp             EEEEETTSCGGGT---TCCEEEECB
T ss_pred             EEEEeccccccCC---CCCeEEECC
Confidence            9999999986532   234455443

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.24  E-value=8.4e-12  Score=125.82  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=64.0

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +.++||||+|.+.+    ..++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|+|.++
T Consensus        55 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           55 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            46799999999976    358899999999999999999998864    459999999999999999999999999885

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.24  E-value=5.7e-12  Score=127.85  Aligned_cols=73  Identities=19%  Similarity=0.378  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEe-cCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLL-DHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~-D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+.+.    .++||+++++|+||+|||+|.|.+.. ...|.|.|| |+|++++|++||.+.|+|.++..
T Consensus        49 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~  127 (171)
T 2q3x_A           49 KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL  127 (171)
T ss_dssp             -CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCT
T ss_pred             CCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHccc
Confidence            467999999999653    27899999999999999999998754 459999999 99999999999999999999853

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.23  E-value=5.1e-12  Score=99.81  Aligned_cols=46  Identities=26%  Similarity=0.560  Sum_probs=42.2

Q ss_pred             cccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCCC
Q psy16327        619 RTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG  675 (994)
Q Consensus       619 ~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~  675 (994)
                      ++|+|+|||.           ..+||+|||++.|.+|++|||||++++|+|+||+..
T Consensus         1 ~tt~W~~P~~-----------~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~   46 (49)
T 2dwv_A            1 GSSGSSGPLE-----------REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP   46 (49)
T ss_dssp             CCSSSCCSCC-----------SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred             CeecCcCCCC-----------CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence            4789999985           368999999999999999999999999999999874

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=6.4e-12  Score=123.12  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=67.6

Q ss_pred             CCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCC--CcccceEEeehhhhhc
Q psy16327        150 PNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRR--DCTIGEKRLNIYGVLA  219 (994)
Q Consensus       150 ~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~--d~~lG~~~i~l~~~~~  219 (994)
                      +||||+|.+.  +.  .++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+.+  |++||.+.|+|.++..
T Consensus        44 ~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~  123 (142)
T 2dmg_A           44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL  123 (142)
T ss_dssp             CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred             CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence            8999999994  22  57899999999999999999998864    3599999999999864  5799999999998754


Q ss_pred             ccCCccceEEEEeecCCCCCCC
Q psy16327        220 HYNGKCEHLEITLDLMNDSRVS  241 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~~  241 (994)
                      ..   ...  .+++|....+..
T Consensus       124 ~~---~~~--~W~~L~~~~~~~  140 (142)
T 2dmg_A          124 AK---GWT--QWYDLTEDSGPS  140 (142)
T ss_dssp             TT---CBC--CBCCCBCSCSCC
T ss_pred             cc---ccc--ceeeccCCCCCC
Confidence            32   222  345555544433

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.20  E-value=1.2e-11  Score=125.04  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=60.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY  221 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~  221 (994)
                      ..++||||+|.  ++ ..||++++ +++||+|||+|.|.+.. ...|.|+|||+| +.+|++||.+.|+|.++....
T Consensus        29 ~g~~DPYV~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           29 QEKFNTYVTLK--VQ-NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCS
T ss_pred             CCCCCeEEEEE--ec-ceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcccC
Confidence            45689999999  33 56776665 79999999999998874 468999999999 999999999999999987653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.19  E-value=2.1e-11  Score=134.70  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEee-hhhhhc
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLN-IYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~-l~~~~~  219 (994)
                      +.++||||+|.+  ++.+++||+++++|+||+|||+|.|.+..    ...|.|.|||+|++++|++||++.|+ |.++..
T Consensus        38 ~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~  117 (296)
T 1dqv_A           38 NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE  117 (296)
T ss_dssp             TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGS
T ss_pred             CCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEecccccccc
Confidence            567999999999  56778999999999999999999998863    34899999999999999999999995 555544


Q ss_pred             ccCCccceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327        220 HYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPL  252 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~  252 (994)
                      ...  ....|..|..........|+|.+.+.+.
T Consensus       118 ~~~--~~~~w~~L~~~~~~~~~~G~i~vsl~y~  148 (296)
T 1dqv_A          118 QPP--DRPLWRDILEGGSEKADLGELNFSLCYL  148 (296)
T ss_dssp             SCS--SCCCCEECBCCSSCCSCCCEEEEEEEEE
T ss_pred             CCc--cceeeeccccccccccccceEEEEEEec
Confidence            321  1223444433333445679998887653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.18  E-value=2.2e-11  Score=121.83  Aligned_cols=70  Identities=23%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      +.++||||+|.+.+.    .++||+++++|+||+|||+|.|.+..    ...|.|.|||+|.+++|++||.+.|+|..
T Consensus        43 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~  120 (159)
T 1tjx_A           43 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS  120 (159)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred             CCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCC
Confidence            467999999999642    36899999999999999999998864    35899999999999999999999999984

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.18  E-value=1e-11  Score=123.37  Aligned_cols=70  Identities=26%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             CCCCCCeEEEeec--cCC--ceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVD--YKN--PKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~~--~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      +.++||||+|.+.  +..  ++||+++++|+||+|||+|.|.+...    ..|.|.|||+|.+++|++||.+.|+|.+
T Consensus        48 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           48 SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             --CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            4568999999993  332  57999999999999999999988754    5899999999999999999999999987

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.18  E-value=1e-11  Score=120.64  Aligned_cols=71  Identities=24%  Similarity=0.411  Sum_probs=62.8

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +.++||||+|.+.+.    .++||+++++|+||.|||+|.|.+...    ..|.|.|||+|.+++|++||.+.|+|.++
T Consensus        34 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           34 GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            457899999999753    478999999999999999999988654    48999999999999999999999999864

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.2e-11  Score=97.59  Aligned_cols=41  Identities=37%  Similarity=0.711  Sum_probs=38.4

Q ss_pred             CcccccCCC---CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        396 RSSSWERPQ---PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       396 ~~t~w~~P~---~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ++|+|++|.   +||+|||++.|++|++|||||+|++|+|++|.
T Consensus         1 ~tt~W~~P~~~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~   44 (49)
T 2dwv_A            1 GSSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPS   44 (49)
T ss_dssp             CCSSSCCSCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred             CeecCcCCCCCCCCCcCcEEEECCCCCEEEEECCCCCEeccCcC
Confidence            578999994   79999999999999999999999999999997

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.16  E-value=7.4e-11  Score=129.21  Aligned_cols=101  Identities=20%  Similarity=0.249  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH  220 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~  220 (994)
                      ..++||||+|.+++  .+++||+++++|+||.|||+|.|.+..    ...|.|.|||+|.+++|++||++.|+|.++...
T Consensus        37 ~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~  116 (284)
T 2r83_A           37 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG  116 (284)
T ss_dssp             SSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCS
T ss_pred             CCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccC
Confidence            45799999999953  457899999999999999999998763    369999999999999999999999999998543


Q ss_pred             cCCccceEEEEeecCCCC---CCCCCeEEEecCCc
Q psy16327        221 YNGKCEHLEITLDLMNDS---RVSPPLMSVEMPPL  252 (994)
Q Consensus       221 ~~~~~~~~~~~l~L~~~~---~~~~G~l~v~~~~~  252 (994)
                         ....  .+++|....   ....|+|.+.+...
T Consensus       117 ---~~~~--~w~~L~~~~~~~~~~~G~i~l~l~~~  146 (284)
T 2r83_A          117 ---HVTE--EWRDLQSAEKEEQEKLGDICFSLRYV  146 (284)
T ss_dssp             ---SCEE--EEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred             ---Ccce--eEEEeeccccccccccccEEEEEEec
Confidence               2223  444555432   24679998887653

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=99.15  E-value=2.9e-12  Score=116.98  Aligned_cols=58  Identities=29%  Similarity=0.600  Sum_probs=53.9

Q ss_pred             CCCCceEeecCCCCeeeeeCCCCcccccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      .|.||+.+.++.|++||+||++..     -.+||+|||.++|++|++||+||+|++|+|++|.
T Consensus        46 ~p~~we~~~~~~~lV~~vn~~~d~-----~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPR  103 (109)
T 3l4h_A           46 DARNFERYQHNRDLVNFINMFADT-----RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPR  103 (109)
T ss_dssp             CTHHHHHHTTCHHHHHHHHTTCCT-----TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSC
T ss_pred             CCcChhhhcCcCCceEEeccCCCC-----CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCC
Confidence            688999999999999999999743     3479999999999999999999999999999997

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.10  E-value=6e-11  Score=93.53  Aligned_cols=40  Identities=38%  Similarity=0.745  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       504 ~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      .++...+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus         7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A            7 GLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             CCCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred             ccCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence            3455678999999999999999999999999999999864

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.08  E-value=5.4e-11  Score=89.07  Aligned_cols=34  Identities=38%  Similarity=1.000  Sum_probs=32.3

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      .+||+||+++++.+|++||+||.|++|+|++||.
T Consensus         5 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl   38 (38)
T 2law_A            5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL   38 (38)
T ss_dssp             CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            4799999999999999999999999999999984

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.1e-11  Score=96.49  Aligned_cols=42  Identities=40%  Similarity=0.710  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327        503 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER  544 (994)
Q Consensus       503 ~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~  544 (994)
                      ..++...+||+|||+++|.+||+|||||.|++|+|++|+...
T Consensus         6 ~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~~   47 (60)
T 2yse_A            6 SGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEA   47 (60)
T ss_dssp             CCCCCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHHH
T ss_pred             cccCCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCchh
Confidence            344566789999999999999999999999999999999763

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.07  E-value=1e-10  Score=88.58  Aligned_cols=35  Identities=46%  Similarity=0.878  Sum_probs=32.9

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      ..+||+||+++++.+|++||+||+|++|+|++|+.
T Consensus         5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~   39 (40)
T 2ysf_A            5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT   39 (40)
T ss_dssp             CCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred             cCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence            35899999999999999999999999999999985

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.07  E-value=9.2e-11  Score=88.84  Aligned_cols=35  Identities=34%  Similarity=0.739  Sum_probs=32.8

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      ..+||+||+++++.+||+|||||.|++|+|++|+.
T Consensus         5 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             SSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence            34899999999999999999999999999999985

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.06  E-value=1.1e-10  Score=89.22  Aligned_cols=35  Identities=54%  Similarity=1.161  Sum_probs=33.0

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      .+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus         6 ~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             SCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            47999999999999999999999999999999964

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.04  E-value=1.6e-10  Score=91.03  Aligned_cols=40  Identities=40%  Similarity=0.712  Sum_probs=36.1

Q ss_pred             ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                      +.+...+||+|||++++++|++|||||.|++|+|+|||..
T Consensus         7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A            7 GLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             CCCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred             ccCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence            3455679999999999999999999999999999999964

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=99.04  E-value=1.2e-10  Score=89.88  Aligned_cols=38  Identities=55%  Similarity=1.103  Sum_probs=30.5

Q ss_pred             cccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       399 ~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      +|++|.+||+||+++.|++|++||+||.|++|+|++|.
T Consensus         2 ~we~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~   39 (43)
T 1ymz_A            2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT   39 (43)
T ss_dssp             -----CCCCSSEEEEECTTSCEEEEETTTTEEESSCCC
T ss_pred             CcccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCc
Confidence            68999999999999999999999999999999999996

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.03  E-value=1.7e-10  Score=85.48  Aligned_cols=34  Identities=62%  Similarity=1.265  Sum_probs=32.1

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      .+||+||+++.|.+|++||+||.|++|+|++|++
T Consensus         3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~l   36 (36)
T 1wr3_A            3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL   36 (36)
T ss_dssp             SCSCTTEEEEECSSSCEEEEETTTCCEESSCSCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcCC
Confidence            4799999999999999999999999999999973

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=87.28  Aligned_cols=35  Identities=54%  Similarity=1.195  Sum_probs=32.6

Q ss_pred             CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327        594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT  628 (994)
Q Consensus       594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~  628 (994)
                      ..+||+||+++++++|++||+||.|++|+|+|||.
T Consensus         4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl   38 (38)
T 2law_A            4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL   38 (38)
T ss_dssp             -CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred             cCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            35899999999999999999999999999999984

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.03  E-value=1.5e-10  Score=88.16  Aligned_cols=35  Identities=51%  Similarity=1.169  Sum_probs=32.9

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      ..+||+||++++|++|++||+||.|++|+|++|+.
T Consensus         6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~   40 (41)
T 1wr7_A            6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL   40 (41)
T ss_dssp             CCSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence            35899999999999999999999999999999985

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.03  E-value=2.8e-10  Score=92.69  Aligned_cols=35  Identities=40%  Similarity=0.925  Sum_probs=32.2

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus        11 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr   45 (57)
T 2ysd_A           11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPR   45 (57)
T ss_dssp             CCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCC
Confidence            44689999999999999999999999999999994

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.02  E-value=1.5e-10  Score=137.01  Aligned_cols=88  Identities=16%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEe-c--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-S--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG  223 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v-~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~  223 (994)
                      +.++||||+|.++++ ++||+|+++++||+|||+|.|.+ .  ....|.|+|||+|.+++|||||.+.++|..      |
T Consensus       411 ~g~sDPYV~v~l~~~-~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~------g  483 (540)
T 3nsj_A          411 TTATDAYLKVFFGGQ-EFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS------G  483 (540)
T ss_dssp             CSCCCEEEEEEETTE-EEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCCS------E
T ss_pred             CCCcCeEEEEEECCE-eeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEeeC------C
Confidence            567999999999775 79999999999999999999964 2  567999999999999999999999999872      2


Q ss_pred             ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        224 KCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      .   .+.+..|      ..|.|.+.+.
T Consensus       484 ~---~~~~~~l------~~G~l~~~~~  501 (540)
T 3nsj_A          484 F---HEVTCEL------NHGRVKFSYH  501 (540)
T ss_dssp             E---EEEEEEC------SSSEEEEEEE
T ss_pred             c---EEEEEEc------CCeEEEEEEE
Confidence            2   2233443      3588777664

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=99.02  E-value=2.5e-10  Score=90.14  Aligned_cols=36  Identities=50%  Similarity=1.082  Sum_probs=33.6

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||+++++++|++|||||+|++|+|++|+..
T Consensus         9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~   44 (49)
T 2ysb_A            9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES   44 (49)
T ss_dssp             CCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence            458999999999999999999999999999999964

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.02  E-value=2e-10  Score=87.78  Aligned_cols=36  Identities=61%  Similarity=1.103  Sum_probs=33.8

Q ss_pred             CCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                      .++||+|||++++++|++|||||.|++|+|+|||..
T Consensus         5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             CSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             cCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            358999999999999999999999999999999974

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=86.78  Aligned_cols=34  Identities=71%  Similarity=1.323  Sum_probs=32.4

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      .+||+||++++|++|++||+||.|++|+|++|+.
T Consensus         5 ~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             CCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred             CCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence            4899999999999999999999999999999985

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=99.02  E-value=2.1e-10  Score=89.52  Aligned_cols=36  Identities=42%  Similarity=1.085  Sum_probs=33.5

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+|||++++.+||+||+||+|++|+|++|+..
T Consensus         8 ~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~   43 (46)
T 2ez5_W            8 EEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG   43 (46)
T ss_dssp             SCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred             CCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence            347999999999999999999999999999999964

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.02  E-value=2.3e-10  Score=86.70  Aligned_cols=35  Identities=43%  Similarity=0.848  Sum_probs=33.1

Q ss_pred             CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327        594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT  628 (994)
Q Consensus       594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~  628 (994)
                      ..+||+||+++++++|++|||||.|++|+|+|||.
T Consensus         5 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             SSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence            35899999999999999999999999999999985

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.02  E-value=2.4e-10  Score=86.55  Aligned_cols=34  Identities=56%  Similarity=1.014  Sum_probs=32.7

Q ss_pred             CCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327        595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT  628 (994)
Q Consensus       595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~  628 (994)
                      .+||+|||++++++|++|||||.|++|+|+|||.
T Consensus         6 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~   39 (40)
T 2ysf_A            6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT   39 (40)
T ss_dssp             CCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred             CCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence            5899999999999999999999999999999996

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.01  E-value=3.7e-10  Score=134.10  Aligned_cols=99  Identities=23%  Similarity=0.369  Sum_probs=77.2

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      +.++||||+|.+++ +++||+++++|+||.|||+|.|.+..  ...|.|.|||+|.+++|++||.+.|+|.++.......
T Consensus       405 ~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~  483 (510)
T 3jzy_A          405 NGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK  483 (510)
T ss_dssp             TSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCC
Confidence            56799999999955 48999999999999999999998864  3579999999999999999999999999997642111


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                       ..+..++.|..   ...|+|.|.+.
T Consensus       484 -~~~~~~~~l~~---~~~G~i~l~~~  505 (510)
T 3jzy_A          484 -GPMTRRLLLHE---VPTGEVWVRFD  505 (510)
T ss_dssp             -CSCCEEEECBS---SSSCEEEEEEE
T ss_pred             -CceeeeecCCC---CCCceEEEEEE
Confidence             11223334442   25688877664

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.00  E-value=2.2e-10  Score=87.34  Aligned_cols=35  Identities=46%  Similarity=1.116  Sum_probs=28.9

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus         5 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr   39 (41)
T 1wr7_A            5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR   39 (41)
T ss_dssp             CCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred             ccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence            34678888888888888888888888888888883

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=99.00  E-value=2.4e-10  Score=88.10  Aligned_cols=39  Identities=54%  Similarity=1.060  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       504 ~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      +|+.+.+||+||++++|++||+||+||.|++|+|++|+.
T Consensus         2 ~we~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~   40 (43)
T 1ymz_A            2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI   40 (43)
T ss_dssp             -----CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCS
T ss_pred             CcccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCcc
Confidence            578888999999999999999999999999999999985

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=99.00  E-value=3.8e-10  Score=88.01  Aligned_cols=36  Identities=42%  Similarity=1.055  Sum_probs=33.4

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||+++++.+|++|||||.|++|+|++|+..
T Consensus         9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~~   44 (46)
T 2l4j_A            9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLE   44 (46)
T ss_dssp             TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSSC
T ss_pred             CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCcC
Confidence            358999999999999999999999999999999963

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=98.99  E-value=3e-10  Score=84.15  Aligned_cols=34  Identities=59%  Similarity=1.206  Sum_probs=32.0

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      .+||+||+++.|++|++||+||.|++|+|++|+.
T Consensus         3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~~   36 (36)
T 1wr4_A            3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM   36 (36)
T ss_dssp             TTCCTTEEEEECSSSCEEEEETTTTEEESSCCCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCCC
Confidence            4799999999999999999999999999999973

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=98.98  E-value=3.4e-10  Score=89.91  Aligned_cols=36  Identities=44%  Similarity=1.094  Sum_probs=33.5

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus         9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~   44 (50)
T 1i5h_W            9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence            458999999999999999999999999999999964

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=98.98  E-value=4.1e-10  Score=87.81  Aligned_cols=35  Identities=37%  Similarity=0.920  Sum_probs=29.3

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ...+||+||+++.+++|++|||||+|++|+|++|.
T Consensus         8 ~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr   42 (46)
T 2l4j_A            8 ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR   42 (46)
T ss_dssp             TTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred             cCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence            44678888888888888888888888888888884

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=98.98  E-value=3.6e-10  Score=88.19  Aligned_cols=35  Identities=40%  Similarity=1.065  Sum_probs=29.1

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus         7 ~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr   41 (46)
T 2ez5_W            7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPR   41 (46)
T ss_dssp             CSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTT
T ss_pred             CCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence            34578888888888888888888888888888884

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=98.97  E-value=3.7e-10  Score=90.60  Aligned_cols=36  Identities=50%  Similarity=1.043  Sum_probs=33.5

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+|||++++.+|++|||||+|++|+|++|+..
T Consensus        16 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~   51 (53)
T 2jmf_A           16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG   51 (53)
T ss_dssp             CSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred             CCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence            358999999999999999999999999999999963

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=98.97  E-value=3.4e-10  Score=83.84  Aligned_cols=32  Identities=63%  Similarity=1.378  Sum_probs=23.0

Q ss_pred             CCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      .+||+||+++.|++||+|||||+|++|+|++|
T Consensus         3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P   34 (36)
T 1wr3_A            3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP   34 (36)
T ss_dssp             SCSCTTEEEEECSSSCEEEEETTTCCEESSCS
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeeeCc
Confidence            35777777777777777777777777777776

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=98.97  E-value=5.4e-10  Score=88.74  Aligned_cols=39  Identities=59%  Similarity=1.224  Sum_probs=35.5

Q ss_pred             ccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327        592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG  630 (994)
Q Consensus       592 ~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~  630 (994)
                      +..++||+||+++++.+|++|||||.|++|+|+|||...
T Consensus         7 ~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~~   45 (50)
T 1i5h_W            7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN   45 (50)
T ss_dssp             SCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSC
T ss_pred             ccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCCc
Confidence            345789999999999999999999999999999999754

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=5e-10  Score=86.22  Aligned_cols=36  Identities=58%  Similarity=1.171  Sum_probs=33.3

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||++++|++||+||+||.|++|+|++|+..
T Consensus         5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~   40 (43)
T 2dmv_A            5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP   40 (43)
T ss_dssp             CCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence            358999999999999999999999999999999853

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=98.95  E-value=4.1e-10  Score=89.22  Aligned_cols=36  Identities=47%  Similarity=1.079  Sum_probs=32.6

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||++++|.+|++|||||+|++|+|++|+..
T Consensus        10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~   45 (49)
T 2kpz_A           10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK   45 (49)
T ss_dssp             --CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence            358999999999999999999999999999999964

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=98.95  E-value=5.8e-10  Score=84.06  Aligned_cols=35  Identities=54%  Similarity=1.175  Sum_probs=33.1

Q ss_pred             CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327        594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT  628 (994)
Q Consensus       594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~  628 (994)
                      .++||+||+++++++|++||+||.|++|+|++|+.
T Consensus         4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence            46899999999999999999999999999999985

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.94  E-value=8.6e-10  Score=87.06  Aligned_cols=36  Identities=44%  Similarity=1.093  Sum_probs=31.1

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP  405 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~  405 (994)
                      ...+||+||+++.+++||+|||||+|++|+|++|..
T Consensus         8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~   43 (49)
T 2ysb_A            8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE   43 (49)
T ss_dssp             CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence            345799999999999999999999999999999954

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=7.3e-10  Score=85.33  Aligned_cols=35  Identities=51%  Similarity=1.105  Sum_probs=29.5

Q ss_pred             CCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327        371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP  405 (994)
Q Consensus       371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~  405 (994)
                      ..+||+||+++.|++||+|||||+|++|+|++|..
T Consensus         5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~   39 (43)
T 2dmv_A            5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG   39 (43)
T ss_dssp             CCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence            35788899998888899999999999999988853

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=98.93  E-value=1e-09  Score=88.48  Aligned_cols=39  Identities=41%  Similarity=0.838  Sum_probs=35.6

Q ss_pred             cCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccc
Q psy16327        593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ  631 (994)
Q Consensus       593 ~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~  631 (994)
                      ..++||+|||++++++|++|||||.|++|+|+|||....
T Consensus         8 ~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~   46 (54)
T 1wmv_A            8 VAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFT   46 (54)
T ss_dssp             CSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCC
T ss_pred             cCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCccc
Confidence            346899999999999999999999999999999998654

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=98.93  E-value=5.6e-10  Score=82.69  Aligned_cols=32  Identities=56%  Similarity=1.240  Sum_probs=23.3

Q ss_pred             CCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      .+||+||+++.+++||+|||||+|++|+|++|
T Consensus         3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P   34 (36)
T 1wr4_A            3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP   34 (36)
T ss_dssp             TTCCTTEEEEECSSSCEEEEETTTTEEESSCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEeCcCC
Confidence            45777777777777777777777777777776

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=98.93  E-value=4.9e-10  Score=89.89  Aligned_cols=38  Identities=79%  Similarity=1.482  Sum_probs=35.4

Q ss_pred             CCCCCCCCcceeeccCcceeeeccCCCccccCCCCCCC
Q psy16327        639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGV  676 (994)
Q Consensus       639 ~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~  676 (994)
                      ...+||+|||++++.+|++|||||++++|+|+|||.+.
T Consensus        15 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~~   52 (53)
T 2jmf_A           15 NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA   52 (53)
T ss_dssp             SCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSSC
T ss_pred             cCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCCC
Confidence            46799999999999999999999999999999999864

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=98.92  E-value=8.3e-10  Score=82.30  Aligned_cols=33  Identities=42%  Similarity=1.063  Sum_probs=31.8

Q ss_pred             CCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       510 ~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      +||+||+++++++|++||+||.|++|+|++|+.
T Consensus         3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A            3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence            799999999999999999999999999999985

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=8.9e-10  Score=90.34  Aligned_cols=43  Identities=42%  Similarity=0.708  Sum_probs=35.2

Q ss_pred             CcccccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCchh
Q psy16327        396 RSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  438 (994)
Q Consensus       396 ~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~  438 (994)
                      +...|....+||+|||++.|+.|++|||||+|++|+|++|...
T Consensus         4 g~~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~   46 (60)
T 2yse_A            4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE   46 (60)
T ss_dssp             CSCCCCCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred             CccccCCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence            4455666678899999999888999999999999999999754

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=98.90  E-value=8.4e-10  Score=82.25  Aligned_cols=32  Identities=44%  Similarity=1.096  Sum_probs=21.3

Q ss_pred             CCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      +||+||+++.+++||+|||||.|++|+|++|.
T Consensus         3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~   34 (37)
T 1e0m_A            3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR   34 (37)
T ss_dssp             CSCTTEEEEECSSCCEEEEETTTTEEESSCTT
T ss_pred             CCCCCcEEEECCCCCEEEEECCCCCeeeeCcC
Confidence            56666666666666666666666666666663

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=98.89  E-value=9.3e-10  Score=87.15  Aligned_cols=37  Identities=51%  Similarity=1.089  Sum_probs=32.9

Q ss_pred             CCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327        594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG  630 (994)
Q Consensus       594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~  630 (994)
                      .++||+||+++++++|++|||||.|++|+|+|||...
T Consensus        10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~~   46 (49)
T 2kpz_A           10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKI   46 (49)
T ss_dssp             --CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC-
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCCC
Confidence            4689999999999999999999999999999999753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=98.89  E-value=1.6e-09  Score=118.64  Aligned_cols=71  Identities=24%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +.++||||+|.+.  |.  .++||+++++|+||+|||.|.|.+...    ..|.|.|||+|.+++|++||.+.|+|..+
T Consensus       168 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence            4569999999984  32  367999999999999999999988653    37999999999999999999999999763

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.88  E-value=1.3e-09  Score=82.74  Aligned_cols=34  Identities=47%  Similarity=1.057  Sum_probs=27.5

Q ss_pred             CCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ..+||+||+++.+++||+|||||.|++|+|++|.
T Consensus         5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~   38 (40)
T 2ysh_A            5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS   38 (40)
T ss_dssp             CSSCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence            3568888888888888888888888888888884

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.86  E-value=1.8e-09  Score=81.86  Aligned_cols=35  Identities=51%  Similarity=1.086  Sum_probs=32.6

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      +.+||+||++++|++||+||+||.|++|+|++|+.
T Consensus         5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             CSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            34799999999999999999999999999999974

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-09  Score=87.61  Aligned_cols=42  Identities=40%  Similarity=0.725  Sum_probs=37.8

Q ss_pred             CCCCCCCcceeeccCcceeeeccCCCccccCCCCCCCCCCCC
Q psy16327        640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQK  681 (994)
Q Consensus       640 ~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~  681 (994)
                      ..+||+|||++++.+|++|||||++++|+|+|||......++
T Consensus         9 ~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~~~~   50 (54)
T 1wmv_A            9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN   50 (54)
T ss_dssp             SSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCCCCC
T ss_pred             CCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCccccccC
Confidence            578999999999999999999999999999999997665443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=98.84  E-value=2.9e-09  Score=128.77  Aligned_cols=95  Identities=16%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCC-CCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNT-YQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~t-lnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ..++||||+|.+.|.    .++||++++++ +||+|||+|.|.|..  ...|.|.|||+|.+++|++||.+.|+|.+|..
T Consensus       517 ~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCC
T ss_pred             cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCC
Confidence            457999999999763    47899999998 999999999998864  36899999999999999999999999999854


Q ss_pred             ccCCccceEEEEeecCCCCCC--CCCeEEEec
Q psy16327        220 HYNGKCEHLEITLDLMNDSRV--SPPLMSVEM  249 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~--~~G~l~v~~  249 (994)
                      .      .  -.++|.+..+.  ..+.|.|.+
T Consensus       597 G------~--r~v~L~d~~g~~~~~~~L~v~i  620 (624)
T 1djx_A          597 G------Y--RHVHLLSKNGDQHPSATLFVKI  620 (624)
T ss_dssp             E------E--EEEEEECTTSCEEEEEEEEEEE
T ss_pred             C------c--EEEeCCCCCcCCCCceEEEEEE
Confidence            2      1  24566655443  245666655

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=98.83  E-value=2.3e-09  Score=130.83  Aligned_cols=72  Identities=29%  Similarity=0.600  Sum_probs=64.6

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||+|.+++  ..++||+|+++|+||+|||+|.|.+..  ...|.|.|||+|.++ |++||++.|+|.++..
T Consensus        39 ~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~  114 (749)
T 1cjy_A           39 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKV  114 (749)
T ss_dssp             HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSS-CEEEEEECCBSTTSCT
T ss_pred             CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCC-CceeEEEEEEHHHcCC
Confidence            45799999999975  358899999999999999999998874  469999999999999 9999999999999843

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=98.82  E-value=2.7e-09  Score=79.27  Aligned_cols=33  Identities=36%  Similarity=0.779  Sum_probs=30.7

Q ss_pred             CCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       510 ~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      +||+||+++.|..| +||+||.|++|+|++|+..
T Consensus         3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~~   35 (38)
T 2ho2_A            3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA   35 (38)
T ss_dssp             CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC-
T ss_pred             cCCCCceEEEeCCC-CEEEecCCCCEeccCCCCC
Confidence            69999999999999 9999999999999999853

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.78  E-value=5.6e-10  Score=131.44  Aligned_cols=70  Identities=14%  Similarity=0.114  Sum_probs=5.6

Q ss_pred             CCCeEEEeeccCCceeeeeecCC---CCCCcceEEEEEec-CCCeEEEEEec-CC---CCCCCcccceEEeehhhhhc
Q psy16327        150 PNPYIELYVDYKNPKTTRVVKNT---YQPKWNEEFTVLVS-PYSIILFRLLD-HR---TFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       150 ~dPyv~v~~~g~~~~kT~v~k~t---lnP~Wne~f~~~v~-~~~~l~~~V~D-~d---~~~~d~~lG~~~i~l~~~~~  219 (994)
                      .||||++.++|+..+||++++||   +||+|||+|.|.+. ..+.|.|.||| +|   ++.+|++||.+.|+|.++..
T Consensus        27 ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~  104 (483)
T 3bxj_A           27 KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAG  104 (483)
T ss_dssp             --------------------------------CCEECC----------------------------------------
T ss_pred             CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcC
Confidence            39999999988778899999999   99999999999754 45799999999 45   47889999999999999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=98.77  E-value=9.1e-10  Score=121.53  Aligned_cols=72  Identities=21%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      +.++||||+|.+.  |+  .++||+++++|+||+|||.|.|.+...    ..|.|.|||+|.+++|++||.+.|++.++.
T Consensus       170 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          170 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence            4568999999995  42  478999999999999999999988653    479999999999999999999999998763

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=98.75  E-value=4.8e-09  Score=77.95  Aligned_cols=30  Identities=47%  Similarity=0.883  Sum_probs=15.9

Q ss_pred             CCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      +||+||+++.|..| +|||||.|++|+|++|
T Consensus         3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P   32 (38)
T 2ho2_A            3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP   32 (38)
T ss_dssp             CSCTTEEEEECSSC-EEEEETTTTEEESSCC
T ss_pred             cCCCCceEEEeCCC-CEEEecCCCCEeccCC
Confidence            35555555555555 5555555555555555

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.75  E-value=5.4e-09  Score=78.22  Aligned_cols=32  Identities=41%  Similarity=0.911  Sum_probs=27.0

Q ss_pred             CCCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      ..+||+||+++.+++| .|||||.|++|+|++|
T Consensus         6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P   37 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP   37 (39)
T ss_dssp             CCCCCTTEEEEEETTE-EEEEESSSCCEESSCC
T ss_pred             CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCC
Confidence            3578899998888888 4888888888888888

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.75  E-value=6.3e-09  Score=77.86  Aligned_cols=33  Identities=45%  Similarity=0.916  Sum_probs=30.6

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      +.+||+||+++.+++| .||+||.|++|+|++|+
T Consensus         6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~   38 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT   38 (39)
T ss_dssp             CCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred             CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence            4589999999999999 59999999999999996

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=98.74  E-value=3.3e-09  Score=83.00  Aligned_cols=36  Identities=39%  Similarity=0.936  Sum_probs=33.6

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER  544 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~  544 (994)
                      .+||+||+++.+.+||+||+||.|++|+|++|+...
T Consensus         7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~   42 (46)
T 1jmq_A            7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCCcCcEEEEcCCCceEEEEecCCceeecCCCchh
Confidence            479999999999999999999999999999999753

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.65  E-value=1.9e-08  Score=79.29  Aligned_cols=34  Identities=41%  Similarity=0.799  Sum_probs=27.2

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ...+||+||+++.|+.| +||+||.|++|+|++|.
T Consensus        16 ~~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~   49 (55)
T 2e45_A           16 TDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG   49 (55)
T ss_dssp             SCSCCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred             CCCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence            44568888888888888 88888888888888884

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=98.65  E-value=1.3e-08  Score=79.62  Aligned_cols=36  Identities=33%  Similarity=0.985  Sum_probs=27.3

Q ss_pred             CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327        370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP  405 (994)
Q Consensus       370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~  405 (994)
                      ...+||+||+++.+++||.||+||+|++|+|++|.+
T Consensus         5 ~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~   40 (46)
T 1jmq_A            5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK   40 (46)
T ss_dssp             SSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred             CCCCCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence            345678888887778888888888888888887754

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=98.64  E-value=1.6e-08  Score=81.51  Aligned_cols=31  Identities=45%  Similarity=0.970  Sum_probs=16.4

Q ss_pred             CCCCCceEeecC-CCCeeeeeCCCCcccccCC
Q psy16327        373 PLPPGWEIRQDT-YGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       373 ~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P  403 (994)
                      +||+||+++.+. .||+||||+.|++|+|++|
T Consensus         7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P   38 (54)
T 2jv4_A            7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPP   38 (54)
T ss_dssp             CCCSSCCEEECSSSSCEEEEETTTTEEESSCC
T ss_pred             CCCCCcEEEEECCCCCEEEEECCCCcEEecCC
Confidence            455555555544 4555555555555555555

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=98.64  E-value=2.2e-08  Score=80.64  Aligned_cols=35  Identities=34%  Similarity=0.842  Sum_probs=32.3

Q ss_pred             CCCCCCceEEeCC-CCCeEEEeCCCCceeccCCChh
Q psy16327        509 QPLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       509 ~~lp~gW~~~~~~-~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      .+||+||+++.+. .||+||+|+.|++|+|++|...
T Consensus         6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            4799999999987 7999999999999999999864

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.62  E-value=6.8e-08  Score=91.66  Aligned_cols=92  Identities=22%  Similarity=0.298  Sum_probs=73.6

Q ss_pred             CCCCeEEEeeccCC---ceee-eeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc---c
Q psy16327        149 KPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH---Y  221 (994)
Q Consensus       149 ~~dPyv~v~~~g~~---~~kT-~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~---~  221 (994)
                      ..||||.|.|+...   ..|| ..++||+.|.|||.|+..|.+..+|.|.||.. ..   +|+.+++|.+.+|++.   .
T Consensus        31 ~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~-a~---~fVAn~tV~~edL~~~ck~~  106 (138)
T 2enj_A           31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGK-NV---DLISETTVELYSLAERCRKN  106 (138)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEEECS-SC---SCCEEEEEESHHHHHHHHHT
T ss_pred             cCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCeEEEEEEEcC-CC---CeeeEEEEEHHHHHhhhccC
Confidence            47999999997542   3788 88899999999999999999999999999944 33   7999999999999976   4


Q ss_pred             CCccceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327        222 NGKCEHLEITLDLMNDSRVSPPLMSVEMPPL  252 (994)
Q Consensus       222 ~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~  252 (994)
                      ++.   .+++++|+     ..|+|.|.+...
T Consensus       107 ~g~---~e~WvdLe-----P~Gkl~v~i~~~  129 (138)
T 2enj_A          107 NGK---TEIWLELK-----PQGRMLMNARYF  129 (138)
T ss_dssp             TTC---EEEEEECB-----SSCEEEEEEEEC
T ss_pred             CCc---eEEEEecc-----cCcEEEEEEEEE
Confidence            433   34556665     478877776554

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.60  E-value=9.8e-08  Score=89.45  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=71.0

Q ss_pred             CCCCeEEEeeccCC---ceee-eeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc---c
Q psy16327        149 KPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH---Y  221 (994)
Q Consensus       149 ~~dPyv~v~~~g~~---~~kT-~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~---~  221 (994)
                      ..||||.|.++...   ..|| ..++||+.|.|||.|+..|.+..+|.|.||... .   +|+.+++|.+.+|+..   .
T Consensus        26 ~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a-~---~fvAn~tV~~edL~~~c~~~  101 (126)
T 1yrk_A           26 ANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA-E---EPVSEVTVGVSVLAERCKKN  101 (126)
T ss_dssp             SCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEEEEET-T---EEEEEEEEEHHHHHHHHHTT
T ss_pred             cCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCEEEEEEEEcCC-C---CeeeEEEEEHHHHHhhhccC
Confidence            47999999997432   2366 888999999999999999999999999999542 2   7999999999999976   3


Q ss_pred             CCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        222 NGKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       222 ~~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      ++ .  .+++++|+     ..|+|.|.+.
T Consensus       102 ~g-~--~e~WvdLe-----P~Gkl~~~i~  122 (126)
T 1yrk_A          102 NG-K--AEFWLDLQ-----PQAKVLMSVQ  122 (126)
T ss_dssp             TT-E--EEEEEECB-----SSCEEEEEEE
T ss_pred             CC-c--eEEEEecc-----cCcEEEEEEE
Confidence            33 2  34566665     4788777653

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.59  E-value=3.2e-08  Score=78.06  Aligned_cols=36  Identities=36%  Similarity=0.741  Sum_probs=32.8

Q ss_pred             CCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       506 ~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      +.+.+||+||+++.|..| +||+||.|++|||++|..
T Consensus        15 ~~~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~   50 (55)
T 2e45_A           15 ETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR   50 (55)
T ss_dssp             CSCSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred             cCCCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence            345689999999999999 999999999999999974

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.57  E-value=6.1e-08  Score=73.14  Aligned_cols=35  Identities=26%  Similarity=0.574  Sum_probs=30.7

Q ss_pred             CCCCCCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327        372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL  406 (994)
Q Consensus       372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l  406 (994)
                      .++|++|.++.+++|+.||||..|++++|++|.++
T Consensus         6 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~   40 (40)
T 2ysi_A            6 SGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV   40 (40)
T ss_dssp             CCCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence            45778899999999999999999999999999653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.55  E-value=4.9e-08  Score=119.85  Aligned_cols=74  Identities=19%  Similarity=0.337  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      +.++||||++.+.    +..++||+++++|+||.|||.|.|.+..   ...|.|.|||+|.+++|++||++.|+|+++..
T Consensus       190 ~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~  269 (674)
T 3pfq_A          190 NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK  269 (674)
T ss_dssp             TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHH
T ss_pred             ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhcc
Confidence            4679999999982    3457899999999999999999998764   34799999999999999999999999999976


Q ss_pred             c
Q psy16327        220 H  220 (994)
Q Consensus       220 ~  220 (994)
                      .
T Consensus       270 ~  270 (674)
T 3pfq_A          270 A  270 (674)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.46  E-value=1.3e-07  Score=70.23  Aligned_cols=33  Identities=33%  Similarity=0.720  Sum_probs=28.1

Q ss_pred             CCCCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327        374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL  406 (994)
Q Consensus       374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l  406 (994)
                      ..++|.++.+++|+.||||..|++|+|++|.+|
T Consensus         4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~   36 (37)
T 1e0l_A            4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL   36 (37)
T ss_dssp             SSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred             CCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence            456799999999999999999999999998765

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.39  E-value=2.6e-07  Score=114.46  Aligned_cols=91  Identities=16%  Similarity=0.254  Sum_probs=69.2

Q ss_pred             CCCCeEEEeeccC-----CceeeeeecC-CCCCCcce-EEEEE-ec--CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        149 KPNPYIELYVDYK-----NPKTTRVVKN-TYQPKWNE-EFTVL-VS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       149 ~~dPyv~v~~~g~-----~~~kT~v~k~-tlnP~Wne-~f~~~-v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ++||||+|.+.|.     .++||+++++ ++||+||| .|.|. |.  +...|.|.|||+|    |+|||.+.|+|..|.
T Consensus       741 ~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d----ddfiG~~~lpL~~L~  816 (885)
T 3ohm_B          741 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG----GKFVGHRILPVSAIR  816 (885)
T ss_dssp             CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT----TEEEEEEEEETTTCC
T ss_pred             CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC----ccEEeeEEEEHHHcC
Confidence            6899999999762     3578999976 59999999 59986 53  3468999999997    789999999999884


Q ss_pred             cccCCccceEEEEeecCCCCCC--CCCeEEEecCC
Q psy16327        219 AHYNGKCEHLEITLDLMNDSRV--SPPLMSVEMPP  251 (994)
Q Consensus       219 ~~~~~~~~~~~~~l~L~~~~~~--~~G~l~v~~~~  251 (994)
                      ..      -  -.+.|.+..+.  ..|.|.|.+..
T Consensus       817 ~G------y--R~vpL~~~~g~~l~~atLfv~i~~  843 (885)
T 3ohm_B          817 SG------Y--HYVCLRNEANQPLCLPALLIYTEA  843 (885)
T ss_dssp             CE------E--EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CC------c--eEEEecCCCCCccCceEEEEEEEE
Confidence            32      1  24667765554  35667776654

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.32  E-value=2.1e-07  Score=70.66  Aligned_cols=33  Identities=30%  Similarity=0.732  Sum_probs=26.1

Q ss_pred             CCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      .++|++|.++.+++|+.||||..|++++|++|.
T Consensus         8 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            456788999999999999999999999999984

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.31  E-value=5.8e-07  Score=110.82  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=68.0

Q ss_pred             CCCCeEEEeeccC------CceeeeeecC-CCCCCcceE-EEEE-ec--CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        149 KPNPYIELYVDYK------NPKTTRVVKN-TYQPKWNEE-FTVL-VS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       149 ~~dPyv~v~~~g~------~~~kT~v~k~-tlnP~Wne~-f~~~-v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ++||||+|.+.|.      +++||+++++ ++||+|||+ |.|. |.  +...|.|.|||++    |+|||.+.|+|+.|
T Consensus       666 ~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d----ddfiG~~~ipL~~L  741 (816)
T 3qr0_A          666 QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGI  741 (816)
T ss_dssp             CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT----SCEEEEEEEESTTC
T ss_pred             CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC----CCeeeEEEEEHHHc
Confidence            5899999999762      3578999886 599999998 9987 64  3468999999985    78999999999988


Q ss_pred             hcccCCccceEEEEeecCCCCCCC--CCeEEEecC
Q psy16327        218 LAHYNGKCEHLEITLDLMNDSRVS--PPLMSVEMP  250 (994)
Q Consensus       218 ~~~~~~~~~~~~~~l~L~~~~~~~--~G~l~v~~~  250 (994)
                      ...      -  -.+.|.+..+..  .+.|.|.+.
T Consensus       742 ~~G------y--R~vpL~~~~g~~~~~atLfv~i~  768 (816)
T 3qr0_A          742 KPG------Y--RHVPLRNESNRPLGLASVFAHIV  768 (816)
T ss_dssp             CCE------E--EEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCc------c--eEEEEeCCCCCCCCceEEEEEEE
Confidence            442      1  346677655543  245666554

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.25  E-value=1e-06  Score=109.12  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             CCCCeEEEeeccC-----Cceeee-eec-CCCCCCcce-EEEE-Eec--CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        149 KPNPYIELYVDYK-----NPKTTR-VVK-NTYQPKWNE-EFTV-LVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       149 ~~dPyv~v~~~g~-----~~~kT~-v~k-~tlnP~Wne-~f~~-~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ++||||+|.+.|.     +++||+ +++ +++||+||| .|.| .|.  +...|.|.|||+|    |++||.+.|+|+.|
T Consensus       694 ~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d----~d~iG~~~ipl~~L  769 (799)
T 2zkm_X          694 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINAL  769 (799)
T ss_dssp             CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEEEEEEEEGGGB
T ss_pred             CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC----CCccceEeeehhhc
Confidence            5899999999652     357899 776 569999999 6999 664  3458999999996    78999999999998


Q ss_pred             hc
Q psy16327        218 LA  219 (994)
Q Consensus       218 ~~  219 (994)
                      ..
T Consensus       770 ~~  771 (799)
T 2zkm_X          770 NS  771 (799)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.20  E-value=3.3e-07  Score=73.18  Aligned_cols=34  Identities=26%  Similarity=0.548  Sum_probs=31.1

Q ss_pred             CCCCCceEEeCC-CCCeEEEeCCCCceeccCCChh
Q psy16327        510 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       510 ~lp~gW~~~~~~-~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      .||+||+++++. .||+||+|+.|++++|++|+..
T Consensus        10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A           10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred             CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence            599999999986 6999999999999999999853

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.20  E-value=2.6e-07  Score=73.81  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=27.5

Q ss_pred             CCCCCCceEeecC-CCCeeeeeCCCCcccccCCC
Q psy16327        372 EPLPPGWEIRQDT-YGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       372 ~~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ..||+||+++.+. +||.||||+.|++|+|++|.
T Consensus         9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~   42 (52)
T 2jx8_A            9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPV   42 (52)
T ss_dssp             HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCC
T ss_pred             CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCC
Confidence            4588899988875 78888888888888888884

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.19  E-value=5.4e-07  Score=96.53  Aligned_cols=36  Identities=28%  Similarity=0.678  Sum_probs=33.8

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER  544 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~  544 (994)
                      .+||+|||++++++|++||+||+|++|+|+||+...
T Consensus        10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~   45 (261)
T 1eg3_A           10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE   45 (261)
T ss_dssp             TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHH
T ss_pred             CCCCCCcceeECCCCCeEeecCCcccccCCCCchhh
Confidence            489999999999999999999999999999999754

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.12  E-value=7.6e-07  Score=95.35  Aligned_cols=36  Identities=33%  Similarity=0.828  Sum_probs=34.1

Q ss_pred             CCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327        595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG  630 (994)
Q Consensus       595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~  630 (994)
                      +|||+|||++++++|++|||||.|++|+|+|||...
T Consensus        10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~   45 (261)
T 1eg3_A           10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE   45 (261)
T ss_dssp             TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHH
T ss_pred             CCCCCCcceeECCCCCeEeecCCcccccCCCCchhh
Confidence            689999999999999999999999999999999754

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.12  E-value=2.9e-06  Score=63.96  Aligned_cols=33  Identities=30%  Similarity=0.775  Sum_probs=31.1

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      .++|.+|.+..+++|+.||+|..|++++|++|.
T Consensus         6 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   38 (40)
T 2ysi_A            6 SGTEEIWVENKTPDGKVYYYNARTRESAWTKPD   38 (40)
T ss_dssp             CCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            378999999999999999999999999999996

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.08  E-value=1.7e-06  Score=86.78  Aligned_cols=36  Identities=44%  Similarity=1.037  Sum_probs=29.1

Q ss_pred             CCCCCCCceEEeC-CCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~-~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||+++++ ..|++||+||.|++|+|++|+..
T Consensus         7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~   43 (166)
T 3tc5_A            7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN   43 (166)
T ss_dssp             ---CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred             CCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence            3589999999999 47999999999999999999854

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.01  E-value=4.2e-06  Score=62.01  Aligned_cols=31  Identities=26%  Similarity=0.728  Sum_probs=29.2

Q ss_pred             CCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       406 lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ...+|.++.+++|+.||+|..|++++|++|.
T Consensus         4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~   34 (37)
T 1e0l_A            4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ   34 (37)
T ss_dssp             SSCSCEEEECTTSCEEEEETTTTEEESSCCS
T ss_pred             CCCCeEEEECCCCCEEEEECCCCCEEecCCC
Confidence            5678999999999999999999999999997

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.00  E-value=2.6e-06  Score=85.43  Aligned_cols=32  Identities=56%  Similarity=1.125  Sum_probs=20.4

Q ss_pred             CCCCCCceEeecC-CCCeeeeeCCCCcccccCC
Q psy16327        372 EPLPPGWEIRQDT-YGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       372 ~~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P  403 (994)
                      .+||+||+++.++ .|++|||||.|++|+|++|
T Consensus         8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P   40 (166)
T 3tc5_A            8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERP   40 (166)
T ss_dssp             --CCTTEEEEECTTTCCEEEEETTTCCEESSCC
T ss_pred             CCCCCCceEEEcCCCCCEEEEECCCCCEEecCC
Confidence            4566777766663 6666666666666666666

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=97.95  E-value=4.2e-06  Score=63.43  Aligned_cols=33  Identities=30%  Similarity=0.841  Sum_probs=27.5

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      ..+|.+|.+..+++|++||+|..|++++|++|.
T Consensus         8 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            357899999999999999999999999999995

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=4.7e-06  Score=69.98  Aligned_cols=30  Identities=30%  Similarity=0.623  Sum_probs=28.7

Q ss_pred             CceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327        377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPL  406 (994)
Q Consensus       377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l  406 (994)
                      .|.++.+.+||+||||..|++|.|++|++|
T Consensus        21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eL   50 (73)
T 2dk7_A           21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDL   50 (73)
T ss_dssp             SCEEEEESSSCEEEEETTTTEECSSCCTTT
T ss_pred             CcEEEECCCCCEEEecCcccceeccCChHh
Confidence            399999999999999999999999999877

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=97.92  E-value=5.2e-06  Score=56.80  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=14.8

Q ss_pred             CceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        377 GWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      ||+ .....|+.||||..|++|+|++|
T Consensus         2 gWe-~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            2 GWE-IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCe-EECCCCCeEEEECCCCCEeccCC
Confidence            555 33345666666666666666555

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=97.79  E-value=1.1e-05  Score=55.24  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=24.3

Q ss_pred             CCceeeeCCCCCeEEEeCCCCcccccCC
Q psy16327        408 PGWELRRDPRGRVYYVDHNTRSTTWQRP  435 (994)
Q Consensus       408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P  435 (994)
                      +||+ .....|+.||+|..|++++|++|
T Consensus         1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE-IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence            5899 66669999999999999999988

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=97.79  E-value=1.2e-05  Score=63.45  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=30.5

Q ss_pred             CceEeecCCCCeeeeeCCCCcccccCCCCCCCCcee
Q psy16327        377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWEL  412 (994)
Q Consensus       377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~  412 (994)
                      .|.++.+++|+.||||..|++++|++|..+-..-++
T Consensus         8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~   43 (50)
T 2dk1_A            8 RWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK   43 (50)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCST
T ss_pred             CeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHh
Confidence            599999999999999999999999999877544433

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}

Probab=97.01  E-value=2.1e-05  Score=73.89  Aligned_cols=39  Identities=5%  Similarity=-0.115  Sum_probs=22.1

Q ss_pred             CccChhhhhhcceeCC-ccCCC----cceeeEEEEe--cCcccccc
Q psy16327         99 QEIDVEDWQRNAIYRH-YTRNS----KQTTRVVKNT--YQPKWNEE  137 (994)
Q Consensus        99 ~~id~~~l~~~t~y~g-y~~~s----~~i~~fw~~f--~~~~e~~~  137 (994)
                      +-|||+|||+||.|+| |..++    ++|+|||++.  |++++|+.
T Consensus         2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~   47 (118)
T 3pt3_A            2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQD   47 (118)
T ss_dssp             ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHH
Confidence            4589999999999996 66666    9999999973  45555555

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=96.99  E-value=0.00029  Score=55.59  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=27.5

Q ss_pred             CCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        408 PGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ..|.++.+++|+.||||..|++++|++|.
T Consensus         7 ~~W~e~~s~~G~~YYyN~~T~eS~WekP~   35 (50)
T 2dk1_A            7 GRWVEGITSEGYHYYYDLISGASQWEKPE   35 (50)
T ss_dssp             CCEEECCCSTTCCCEEESSSCCEESSCCT
T ss_pred             CCeEEEECCCCCEEEEECCCCCEEeeCCh
Confidence            46999999999999999999999999997

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00037  Score=58.58  Aligned_cols=30  Identities=27%  Similarity=0.668  Sum_probs=28.1

Q ss_pred             CCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327        408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      ..|.++.+.+||+||||..|+++.|++|..
T Consensus        20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~e   49 (73)
T 2dk7_A           20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDD   49 (73)
T ss_dssp             SSCEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred             CCcEEEECCCCCEEEecCcccceeccCChH
Confidence            469999999999999999999999999974

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=94.91  E-value=0.02  Score=57.83  Aligned_cols=32  Identities=38%  Similarity=0.929  Sum_probs=19.1

Q ss_pred             CCCCCceEeecC-CCCeeeeeCCCCcccccCCC
Q psy16327        373 PLPPGWEIRQDT-YGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       373 ~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P~  404 (994)
                      .||+||+.+.+. .|+.||+|..|++.+|++|.
T Consensus         7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~   39 (177)
T 1yw5_A            7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPY   39 (177)
T ss_dssp             CCCTTEEEEECSSTTCEEEEETTTCCEESSCCT
T ss_pred             CCCchHHHHhcccCCchhhhhHHHhhHhhcCcc
Confidence            366666666554 56666666666666666553

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=94.55  E-value=0.028  Score=56.65  Aligned_cols=33  Identities=27%  Similarity=0.848  Sum_probs=30.4

Q ss_pred             CCCCCceEEeCCC-CCeEEEeCCCCceeccCCCh
Q psy16327        510 PLPPGWELRRDPR-GRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       510 ~lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P~~  542 (994)
                      .||+||+.+.+.. |+.||+|..|++.+|+.|..
T Consensus         7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~   40 (177)
T 1yw5_A            7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG   40 (177)
T ss_dssp             CCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred             CCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence            5999999999876 99999999999999999863

>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}

Probab=89.83  E-value=0.4  Score=39.98  Aligned_cols=35  Identities=34%  Similarity=0.785  Sum_probs=32.2

Q ss_pred             CCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        507 RPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       507 ~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      ...+||.||-+.....|-+-|++..||..||.+|=
T Consensus        25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY   59 (79)
T 3le4_A           25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPY   59 (79)
T ss_dssp             CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCC
T ss_pred             cCCcCCCccEEEEecCCceEEEeccceEEeccCCe
Confidence            35689999999999999999999999999999995

>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}

Probab=86.72  E-value=0.81  Score=38.20  Aligned_cols=34  Identities=35%  Similarity=0.819  Sum_probs=23.5

Q ss_pred             CCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      -.+||.||..-.-..|-.-|++..|+..||.+|-
T Consensus        26 ~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY   59 (79)
T 3le4_A           26 TEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPY   59 (79)
T ss_dssp             CCCCCTTEEEEECTTSSEEEEETTTTEEESSCCC
T ss_pred             CCcCCCccEEEEecCCceEEEeccceEEeccCCe
Confidence            3567777777666677777777777777777773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	994
d1nd7a_	374	d.148.1.1 (A:) WW domain-containing protein 1, WWP	7e-77
d1nd7a_	374	d.148.1.1 (A:) WW domain-containing protein 1, WWP	3e-17
d1nd7a_	374	d.148.1.1 (A:) WW domain-containing protein 1, WWP	5e-16
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	2e-46
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	5e-14
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	1e-12
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	1e-17
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	2e-14
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	2e-14
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	7e-14
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	1e-13
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	5e-06
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	8e-17
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	3e-14
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	3e-14
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	3e-13
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	4e-13
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	4e-06
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	1e-15
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	2e-14
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	4e-14
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	4e-14
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	1e-13
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	5e-06
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	2e-14
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	2e-14
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	2e-14
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	1e-13
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	6e-13
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	3e-06
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-12
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	3e-11
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	3e-11
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	2e-10
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	4e-10
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	2e-08
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	5e-05
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	7e-08
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	2e-07
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	2e-07
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	4e-07
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	1e-04
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	5e-04
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	4e-07
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	5e-07
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	5e-07
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	3e-05
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	0.003
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	0.004
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-07
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	7e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	4e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-04
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-04
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-04
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-04
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-04
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-04
d1ywia1	28	b.72.1.1 (A:15-42) Huntingtin-interacting protein	0.001
d1ywia1	28	b.72.1.1 (A:15-42) Huntingtin-interacting protein	0.002
d1ywia1	28	b.72.1.1 (A:15-42) Huntingtin-interacting protein	0.002
d1o6wa1	29	b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y	0.001
d1o6wa1	29	b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y	0.001
d1o6wa1	29	b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y	0.001
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	0.001

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  254 bits (650), Expect = 7e-77
 Identities = 170/294 (57%), Positives = 203/294 (69%), Gaps = 6/294 (2%)

Query: 694 FRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGL 753
           FRWKL+ FRYLC  N LPSH+KI V+RQTLFEDS+ Q+M L  Y+LRRRLY+IFRGEEGL
Sbjct: 4   FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGL 63

Query: 754 DYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAM 813
           DYGG++REWFFLLSHEVLNPMYCLFEYA KNNY LQINPAS +NPDHL YF FIGRFIAM
Sbjct: 64  DYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAM 123

Query: 814 ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV 873
           AL+HG+FI +GF++PFYKRML+KKL +KD+ESID EFYNSL+WIRDNNI+ECGLE+Y SV
Sbjct: 124 ALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSV 183

Query: 874 DFEILGQVIHHELKENGDKIRVCEENKEEY----MRWYGSGSSCERAI-VRREPVCFSSL 928
           D EILG+V  H+LK  G  I V EENK+EY      W  S    E+             L
Sbjct: 184 DMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPL 243

Query: 929 PGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLN 982
                F  ++L        E    D W   +       +      + Q V++ +
Sbjct: 244 QWLQYFDEKELEVMLCGMQEVDLAD-WQRNTVYRHYTRNSKQIIWFWQFVKETD 296

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 3e-17
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE 989
           +FCIEKVGKDTWLPRSHTCFNRLDLPPYKSY+Q+ EKL +AIEETE
Sbjct: 329 KFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 5e-16
 Identities = 56/74 (75%), Positives = 68/74 (91%)

Query: 48  DFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQ 107
           D Y  LMTEWR +RG++EQTKAFLDGFNEVVP++WL+YFDE+ELE++LCGMQE+D+ DWQ
Sbjct: 211 DEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQ 270

Query: 108 RNAIYRHYTRNSKQ 121
           RN +YRHYTRNSKQ
Sbjct: 271 RNTVYRHYTRNSKQ 284

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 2e-46
 Identities = 52/200 (26%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 713 HIKITVARQTLFEDSYHQ---VMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHE 769
           ++++ V R  + +D+  +   +      +L+++LY+ F GE+G+D GGVS+E+F L+  E
Sbjct: 3   YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEE 62

Query: 770 VLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPF 829
           + NP   +F Y        ++   +  + +    F  IG  + +A+Y+   +   F M  
Sbjct: 63  IFNPDIGMFTYDEST----KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVV 118

Query: 830 YKRMLNKKLVMKDIESIDPEFYNSLVWIR--DNNIDECGLELYLSVDFEILGQVIHHELK 887
           Y++++ KK   +D+    P  Y SL  +   + N+++  +  +     ++ G  + ++LK
Sbjct: 119 YRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLK 178

Query: 888 ENGDKIRVCEENKEEYMRWY 907
           ENGDKI +  EN++E++  Y
Sbjct: 179 ENGDKIPITNENRKEFVNLY 198

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 5e-14
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 942 SWRFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986
             +  I K G DT  LP SHTCFN L LP Y S +++ E+L  AI 
Sbjct: 303 KLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT 348

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 44  NMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKY-FDERELELILCGMQEID 102
           N     +  L +++ + + +E+Q KAF  GF+ V     LKY F   E+EL++CG + +D
Sbjct: 188 NENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLD 247

Query: 103 VEDWQRNAIYRH-YTRNSKQTTRVVKNTYQ 131
            +  +    Y   YTR+S       +  + 
Sbjct: 248 FQALEETTEYDGGYTRDSVLIREFWEIVHS 277

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 25/48 (52%), Positives = 30/48 (62%)

Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
           G   + + LG LP GWE R   DGRV+F+NH  + TQWEDPR Q   I
Sbjct: 1   GSPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
           PLPPGWE R    GRV++++HN + T W+ P   R+Q+
Sbjct: 11  PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
           PLPPGWE R    GRV++++HN + T W+ P   R+Q+
Sbjct: 11  PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.4 bits (157), Expect = 7e-14
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           D  PLPPGWE R   DG  +F++HN + T +EDPR
Sbjct: 8   DLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           G P       PLPPGWE R  T GR ++++HN + + WE P
Sbjct: 1   GSPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           EE   T GR ++++HN + + WE P
Sbjct: 17  EERTHTDGRVFFINHNIKKTQWEDP 41

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.8 bits (179), Expect = 8e-17
 Identities = 31/38 (81%), Positives = 34/38 (89%)

Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           DALG LP GWE+++Q D RVYFVNHKNRTTQWEDPRTQ
Sbjct: 8   DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ 45

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
           PLP GWE +     RVY+V+H  R+T W+ P   R Q
Sbjct: 12  PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDP---RTQ 45

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
           PLP GWE +     RVY+V+H  R+T W+ P   R Q
Sbjct: 12  PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDP---RTQ 45

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.4 bits (152), Expect = 3e-13
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
              PLP GWE +   D   YFV+H  R+T +EDPR
Sbjct: 9   ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
              PLP GWE +  +  R Y+V+H  R++ WE P+
Sbjct: 9   ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           E+   +  R Y+V+H  R++ WE P+
Sbjct: 18  EKKIQSDNRVYFVNHKNRTTQWEDPR 43

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPK 678
            D+ PLP GWE+  T  G RYF +H  ++TT++DPR  +  
Sbjct: 4   PDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 13/37 (35%), Positives = 27/37 (72%)

Query: 368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
           +P + PLP GWE+ + + G+RY+ +H  ++++W+ P+
Sbjct: 3   IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 400 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           +E P   PLP GWE+ +   G+ Y+ +H  ++TTWQ P
Sbjct: 1   FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 505 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           +E P   PLP GWE+ +   G+ Y+ +H  ++TTWQ P
Sbjct: 1   FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
           LP+GWE      G+ YF NH ++TT W+DPR  
Sbjct: 9   LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 7/26 (26%), Positives = 17/26 (65%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           E    + G+RY+ +H  ++++W+ P+
Sbjct: 14  EMAKTSSGQRYFKNHIDQTTTWQDPR 39

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
           PLPPGWE+R    G  ++VDHNTR TT++ P
Sbjct: 2   PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
           PLPPGWE+R    G  ++VDHNTR TT++ P
Sbjct: 2   PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
           G LP GWE R    G  +FV+H  R T +EDPR
Sbjct: 1   GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 27/32 (84%), Positives = 28/32 (87%)

Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           PLPPGWEIRYT  G R+FVDHNTR TTFEDPR
Sbjct: 2   PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.5 bits (150), Expect = 6e-13
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
           PLPPGWEIR    G R++VDHNTR +++E P
Sbjct: 2   PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
           E      G R++VDHNTR +++E P
Sbjct: 8   EIRYTAAGERFFVDHNTRRTTFEDP 32

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 1e-12
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD 204
                P+PY+E+ VD    K T    NT  PKW +  TV+V+P S + FR+  H+T + D
Sbjct: 22  KNWFGPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSD 80

Query: 205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSV 247
             +G   L+IY  L   N K E + +TL L  D   +  +  +
Sbjct: 81  VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDL 123

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 406 LPPGWELRRDPR-GRVYYVDHNTRSTTWQRPN 436
           LPPGWE R     GRVYY +H T ++ W+RP+
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 511 LPPGWELRRDPR-GRVYYVDHNTRSTTWQRPN 541
           LPPGWE R     GRVYY +H T ++ W+RP+
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 374 LPPGWEIRQD-TYGRRYYVDHNTRSSSWERP 403
           LPPGWE R   + GR YY +H T +S WERP
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 597 LPSGWERRVQP-DGRVYFVNHKNRTTQWEDP 626
           LP GWE+R+    GRVY+ NH    +QWE P
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 643 LPPGWEIRYTE-DGTRYFVDHNTRSTTFEDP 672
           LPPGWE R +   G  Y+ +H T ++ +E P
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 489 TYGRRYYVDHNTRSSSWERP 508
           + GR YY +H T +S WERP
Sbjct: 13  SSGRVYYFNHITNASQWERP 32

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
             S W      DG+ Y+ N++   + WE P+
Sbjct: 4   AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
                W   +   G+ YY ++ T  +TW++P
Sbjct: 3   TAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
                W   +   G+ YY ++ T  +TW++P
Sbjct: 3   TAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
                W   +   G+ YY ++ T  S+WE+PQ L
Sbjct: 3   TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL 511
            E     G+ YY ++ T  S+WE+PQ L
Sbjct: 9   TEYKTADGKTYYYNNRTLESTWEKPQEL 36

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
                W    T DG  Y+ ++ T  +T+E P+
Sbjct: 3   TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (107), Expect = 4e-07
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 598 PSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
            +GW+     DG+VY+ N   R T W  P  +
Sbjct: 13  ENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 44

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 409 GWELRRDPRGRVYYVDHNTRSTTWQRPNSER 439
           GW+  +   G+VYY +  TR T+W  P  E+
Sbjct: 15  GWKAAKTADGKVYYYNPTTRETSWTIPAFEK 45

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 514 GWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544
           GW+  +   G+VYY +  TR T+W  P  E+
Sbjct: 15  GWKAAKTADGKVYYYNPTTRETSWTIPAFEK 45

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
           GW+  +   G+ YY +  TR +SW  P 
Sbjct: 15  GWKAAKTADGKVYYYNPTTRETSWTIPA 42

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 646 GWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
           GW+   T DG  Y+ +  TR T++  P 
Sbjct: 15  GWKAAKTADGKVYYYNPTTRETSWTIPA 42

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
           +      G+ YY +  TR +SW  P 
Sbjct: 17  KAAKTADGKVYYYNPTTRETSWTIPA 42

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.0 bits (111), Expect = 9e-07
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTI 207
             +PY++L    ++ K+         P+WNE F   VS   + +  ++ D      D  +
Sbjct: 30  NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89

Query: 208 GEKRLNIYGVLAHYNGKCEHLEITLD 233
           GE  + +  V    +       +  D
Sbjct: 90  GEATIPLEPVFVEGSIPPTAYNVVKD 115

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 44.5 bits (104), Expect = 7e-06
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 142 GQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTF 201
           G        +PYI L VD      T   + T  P W++EF   V     I   +      
Sbjct: 30  GPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPI 89

Query: 202 RRDCTIGEKRLNIYGVLAHYNGKCE-----------HLEITLD 233
             D  +    +    +L + +   E           ++ I L 
Sbjct: 90  GYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLS 132

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 151 NPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCT 206
            P+  + +         KT    K T  P+W   F   +    +I   L+          
Sbjct: 25  QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDPM--- 81

Query: 207 IGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRV 240
             E  + +  +           E  LDL   ++V
Sbjct: 82  -SEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 149 KPNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTF 201
             +P + + +     D  + +T  +  N + P+W+ EF   V+    +++ F + D+ + 
Sbjct: 26  IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSS 85

Query: 202 RRDCTIGEKRLNIYGVLAHY 221
            ++  IG+  +    +   Y
Sbjct: 86  SKNDFIGQSTIPWNSLKQGY 105

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 149 KPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTF 201
             +PY++L +      ++ + T+ +K +  P+WNE F   +        +   + D    
Sbjct: 35  LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94

Query: 202 RRDCTIGEKRLNI 214
            R+  +G     I
Sbjct: 95  SRNDFMGSLSFGI 107

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 149 KPNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRT 200
             +PY+++ + +       K T V K T    +NE F   +         + F +LD   
Sbjct: 35  LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 94

Query: 201 FRRDCTIGEKRLNI 214
             R+  IG   L  
Sbjct: 95  GSRNEVIGRLVLGA 108

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 149 KPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHR 199
             NPY+++Y       KN + T+ VK T +PKWN+ F             ++   L D  
Sbjct: 34  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93

Query: 200 TFR--RDCTIGEKRLNI 214
             R      +GE  + +
Sbjct: 94  RVREEESEFLGEILIEL 110

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 149 KPNPYIELYVDYKN----PKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRT 200
             +PY+++++         K T + KNT  P +NE F+  V         ++  +LD+  
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104

Query: 201 FRRDCTIGEKRLNIYGV 217
             ++  IG+  +     
Sbjct: 105 IGKNDAIGKVFVGYNST 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 143 QGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLD 197
           +      P   + +  + K+   TRV++ T  P ++E FT    PY+      + F +L 
Sbjct: 39  EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98

Query: 198 HRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEI 230
              F RD  IGE  + + G+         + EI
Sbjct: 99  FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 599 SGWERRVQPDGRVYFVNHKNRTTQWEDP 626
           S W     PDGR Y+ N + + + WE P
Sbjct: 1   SMWTEHKSPDGRTYYYNTETKQSTWEKP 28

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 410 WELRRDPRGRVYYVDHNTRSTTWQRP 435
           W   + P GR YY +  T+ +TW++P
Sbjct: 3   WTEHKSPDGRTYYYNTETKQSTWEKP 28

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 515 WELRRDPRGRVYYVDHNTRSTTWQRP 540
           W   + P GR YY +  T+ +TW++P
Sbjct: 3   WTEHKSPDGRTYYYNTETKQSTWEKP 28

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 599 SGWERRVQPDGRVYFVNHKNRTTQWEDP 626
           S W+      GR+Y+ N   + + WE P
Sbjct: 2   SIWKEAKDASGRIYYYNTLTKKSTWEKP 29

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 410 WELRRDPRGRVYYVDHNTRSTTWQRP 435
           W+  +D  GR+YY +  T+ +TW++P
Sbjct: 4   WKEAKDASGRIYYYNTLTKKSTWEKP 29

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 515 WELRRDPRGRVYYVDHNTRSTTWQRP 540
           W+  +D  GR+YY +  T+ +TW++P
Sbjct: 4   WKEAKDASGRIYYYNTLTKKSTWEKP 29

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL----DHRT 200
             +P+++L++      K    T++ K T  P++NEEF   +    +    L     D+  
Sbjct: 35  YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 94

Query: 201 FRRDCTIGEKRLN 213
            + +  IG  +L 
Sbjct: 95  GKSNDYIGGCQLG 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	994
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	100.0
d1c4za_	350	Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s	100.0
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	99.77
d1c4za_	350	Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s	99.75
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.7
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.55
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.47
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.46
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.41
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.34
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.34
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.33
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.28
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.23
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.23
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.22
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.22
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.18
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.17
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.15
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.15
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.14
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.14
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.08
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.01
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	98.99
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	98.96
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	98.95
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	98.92
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.92
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	98.87
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	98.86
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.76
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.73
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.69
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.63
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.58
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	98.38
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.35
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.32
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.3
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.25
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.14
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	97.89
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	97.84
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	97.8
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.06
d2ysca1	26	Amyloid beta A4 precursor protein-binding family B	91.58
d2ysca1	26	Amyloid beta A4 precursor protein-binding family B	91.41

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-63  Score=562.83  Aligned_cols=296  Identities=70%  Similarity=1.231  Sum_probs=279.4

Q ss_pred             hhhhhhhhhhhhhhccCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHh
Q psy16327        692 RSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVL  771 (994)
Q Consensus       692 ~~f~~k~~~fr~~~~~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~  771 (994)
                      ..|++|+..||++++.+.++++++|+|+|++||+|++++|+++++.+|+++|+|+|.||+|+|+|||+||||++|++|++
T Consensus         2 ~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el~   81 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVL   81 (374)
T ss_dssp             CTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhhcCCCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECCCCccCCCccHHHHHHHHHHHHc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhH
Q psy16327        772 NPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFY  851 (994)
Q Consensus       772 ~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~  851 (994)
                      +|.++||.+++++++++.+||.+...++++++|+|+|+|||+||+++.+++++|+++|||+|+|++++++||+++||++|
T Consensus        82 ~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~~  161 (374)
T d1nd7a_          82 NPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFY  161 (374)
T ss_dssp             CGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHH
T ss_pred             CCccCCeeecCCCCcccccCCccccChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCCCHHHHHHhCHHHH
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc----
Q psy16327        852 NSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS----  911 (994)
Q Consensus       852 ~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~----  911 (994)
                      ++|.+++++++++..++++|+++.+..|...++||++||++|.||.+|+++||++++                +||    
T Consensus       162 ~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vi  241 (374)
T d1nd7a_         162 NSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVV  241 (374)
T ss_dssp             HHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHS
T ss_pred             HhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHhC
Confidence            999999999999888999999999999999999999999999999999999999987                355    


Q ss_pred             ----------------ccc-----------eeeecC------ee------------------------eeccCCCCCCCC
Q psy16327        912 ----------------SCE-----------RAIVRR------EP------------------------VCFSSLPGHAVF  934 (994)
Q Consensus       912 ----------------lcG-----------~t~y~~------qi------------------------s~r~P~~Gf~~l  934 (994)
                                      +||           ++.|.+      +|                        ++|+|++||+.|
T Consensus       242 p~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l  321 (374)
T d1nd7a_         242 PLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL  321 (374)
T ss_dssp             CGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGC
T ss_pred             CHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeeccCCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCcchhhh
Confidence                            888           566654      11                        899999999998


Q ss_pred             CCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy16327        935 PWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE  989 (994)
Q Consensus       935 ~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~  989 (994)
                      .+..  .+.+|+|++.+++++||+||||||+|+||+|+|+|+|++||++||+||+
T Consensus       322 ~~~~--~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         322 MGSN--GPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             EETT--EECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             cccC--CCCceeeccCCCCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            7554  5678999999989999999999999999999999999999999999986

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-52  Score=471.02  Aligned_cols=264  Identities=29%  Similarity=0.544  Sum_probs=231.7

Q ss_pred             CceEEEecCCccchHhHHHhhcC---CccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCcee
Q psy16327        712 SHIKITVARQTLFEDSYHQVMRL---PAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSL  788 (994)
Q Consensus       712 ~~~~i~V~R~~i~eds~~~l~~~---~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~  788 (994)
                      +.++|+|||++||+|++++|...   ...+|+++|+|+|.||+|+|+|||+||||+++++|+++|.++||..++.+.. +
T Consensus         2 p~l~i~v~R~~i~~d~~~~~~~~~~~~~~~l~~~~~V~F~gE~g~D~GG~~rE~~~~l~~el~~p~~~lf~~~~~~~~-~   80 (350)
T d1c4za_           2 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKL-F   80 (350)
T ss_dssp             CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTE-E
T ss_pred             CcEEEEEccCcHHHHHHHHHHHhhhcChHhcCccEEEEecCCcccCCCcCHHHHHHHHHHHHcCCccCCccccCCCcc-c
Confidence            46889999999999999998654   4567899999999999999999999999999999999999999998877654 4


Q ss_pred             eeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCcc-ce
Q psy16327        789 QINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDEC-GL  867 (994)
Q Consensus       789 ~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~-~l  867 (994)
                      .++|...   .+.++|+|+|++||+||+++.+++++|+++|||+|+|.+++++||+++||++|++|++|++++.++. ++
T Consensus        81 ~~~~~~~---~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~Dl~~~D~~~~~sl~~l~~~~~~~~~~~  157 (350)
T d1c4za_          81 WFNPSSF---ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDM  157 (350)
T ss_dssp             EECTTCC---SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHHHT
T ss_pred             cCCccch---hhhhHHHHHHHHHHHHHHCCCCcCccCCHHHHHHHcCCCCcccchhhhCHHHHHHHHHHHHcCCchHhhc
Confidence            5666543   4667999999999999999999999999999999999999999999999999999999999876543 57


Q ss_pred             eeEEEEEE-EecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc-------------------
Q psy16327        868 ELYLSVDF-EILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS-------------------  911 (994)
Q Consensus       868 ~l~F~~~~-~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~-------------------  911 (994)
                      +++|+++. +..|...++||+|||+++.||.+|+++||++++                +||                   
T Consensus       158 ~l~f~~~~~~~~g~~~~~eL~p~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~  237 (350)
T d1c4za_         158 MITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIE  237 (350)
T ss_dssp             CCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHH
T ss_pred             ceeEEEecccCCCCeEEEEccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHH
Confidence            88898876 446778899999999999999999999999887                355                   


Q ss_pred             --ccc-----------eeeecC-------ee------------------------eeccCCCCCCCCCCCCCCCCcceee
Q psy16327        912 --SCE-----------RAIVRR-------EP------------------------VCFSSLPGHAVFPWEDLPNSWRFCI  947 (994)
Q Consensus       912 --lcG-----------~t~y~~-------qi------------------------s~r~P~~Gf~~l~~~~~~~~~~f~i  947 (994)
                        +||           ++.|.+       ++                        ++|+|++||+.+         +|+|
T Consensus       238 ~li~G~~~i~~~~L~~~~~y~~g~~~~~~~i~~fw~vl~~~t~eer~~fL~F~TG~~rlP~~G~~~l---------~~~i  308 (350)
T d1c4za_         238 LLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL---------KMII  308 (350)
T ss_dssp             HHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG---------CCEE
T ss_pred             HhhCCCCcccHHHHHhhCcccCCCCCccHHHHHHHHHHHhCCHHHHHHhhEEeCCCCCCCCCCcccc---------eeEE
Confidence              788           567753       11                        889999999865         5788


Q ss_pred             eecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcC
Q psy16327        948 EKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET  988 (994)
Q Consensus       948 ~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~  988 (994)
                      .+.+ ++++||+||||||+|+||.|+|+|+||+||++||+|+
T Consensus       309 ~~~~~~~~~LP~a~TCf~~L~LP~Y~s~e~l~~kL~~AI~~s  350 (350)
T d1c4za_         309 AKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYA  350 (350)
T ss_dssp             EEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC
T ss_pred             EeCCCCCCCCChHhhhhceEECCCCCCHHHHHHHHHHHHhcC
Confidence            8765 4579999999999999999999999999999999974

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-20  Score=210.56  Aligned_cols=122  Identities=50%  Similarity=0.843  Sum_probs=109.8

Q ss_pred             ccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccC
Q psy16327          6 DHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKY   85 (994)
Q Consensus         6 ~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~   85 (994)
                      +..+...++||+     +||+++.||.+|++            +||+++++|+|.++++.|++||++||++|+|..+|++
T Consensus       186 ~~~~~~~~~eL~-----~~G~~~~VT~~N~~------------~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~  248 (374)
T d1nd7a_         186 EILGKVTSHDLK-----LGGSNILVTEENKD------------EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQY  248 (374)
T ss_dssp             CSSTTCCCEESS-----TTGGGCBCCTTTHH------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTT
T ss_pred             ecCCCcceeecC-----CCCCcccchHHHHH------------HHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhh
Confidence            345566788885     88999999999999            9999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327         86 FDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG  144 (994)
Q Consensus        86 f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~  144 (994)
                      |+|+||+.|+||.++||+++|+++|.|.||+.+|++|+|||++.  |+++|++.   |.++..+
T Consensus       249 f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~r  312 (374)
T d1nd7a_         249 FDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCR  312 (374)
T ss_dssp             CCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred             CCHHHHHHhhCCCCCCCHHHHhhheeeccCCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCC
Confidence            99999999999999999999999999999999999999999974  45666666   4555544

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1e-19  Score=203.60  Aligned_cols=122  Identities=25%  Similarity=0.434  Sum_probs=109.7

Q ss_pred             ccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc-
Q psy16327          6 DHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK-   84 (994)
Q Consensus         6 ~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~-   84 (994)
                      +..+...++||+     |||+++.||.+|++            +||+++++|+|.++++.|++||++||++|+|..+|+ 
T Consensus       167 ~~~g~~~~~eL~-----p~G~~~~Vt~~n~~------------~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~  229 (350)
T d1c4za_         167 DLFGNPMMYDLK-----ENGDKIPITNENRK------------EFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKY  229 (350)
T ss_dssp             CTTTCCEEEESS-----TTTTTSBCCTTTHH------------HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCS
T ss_pred             cCCCCeEEEEcc-----CCCCcccccHHHHH------------HHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhh
Confidence            445778889995     88999999999999            999999999999999999999999999999999995 


Q ss_pred             CCCHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEE--ecCcccccc---ccccccC
Q psy16327         85 YFDERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKN--TYQPKWNEE---FTVGGQG  144 (994)
Q Consensus        85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~--f~~~~e~~~---F~~~~~~  144 (994)
                      +|+|+||+.|+||.++||+++|+++|+|. ||+.+|++|+|||++  .|+++||+.   |.++..+
T Consensus       230 lf~~~eL~~li~G~~~i~~~~L~~~~~y~~g~~~~~~~i~~fw~vl~~~t~eer~~fL~F~TG~~r  295 (350)
T d1c4za_         230 LFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDR  295 (350)
T ss_dssp             CSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSS
T ss_pred             cCCHHHHHHhhCCCCcccHHHHHhhCcccCCCCCccHHHHHHHHHHHhCCHHHHHHhhEEeCCCCC
Confidence            89999999999999999999999999998 799999999999997  456777766   4555443

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-17  Score=160.71  Aligned_cols=106  Identities=34%  Similarity=0.550  Sum_probs=94.0

Q ss_pred             cCCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       145 ~~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ..+.++||||+|.++++ .+||+++++|+||.|||.|.|.+.+.+.|.|+|||+|++++|++||++.|+|++++...++.
T Consensus        22 ~~~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~  100 (133)
T d2nq3a1          22 KNWFGPSPYVEVTVDGQ-SKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK  100 (133)
T ss_dssp             --CCCCCEEEEEEETTE-EEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTE
T ss_pred             CCCCCcCeEEEEEECCe-EEeeEEEEecccEEEcceEEEEEEecceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCc
Confidence            45678999999999765 89999999999999999999999999999999999999999999999999999999988888


Q ss_pred             cceEEEEeecCCCCC--CCCCeEEEecCC
Q psy16327        225 CEHLEITLDLMNDSR--VSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~--~~~G~l~v~~~~  251 (994)
                      .+..++++.|...++  ...|+|.|.|+.
T Consensus       101 ~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1         101 LEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             ESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             eeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            888888888876555  456999998865

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-15  Score=141.95  Aligned_cols=100  Identities=15%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             CCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327        146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK  224 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~  224 (994)
                      ...++||||+|.+++ ++++|+++++|+||.|||.|.|.+.. .+.|.|+|||++++++|++||.+.|+|+++...    
T Consensus        23 ~~g~~Dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~----   97 (126)
T d2ep6a1          23 FSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG----   97 (126)
T ss_dssp             SSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS----
T ss_pred             CCCCcCeEEEEEcCC-eEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCCC----
Confidence            356799999999965 48999999999999999999998864 678999999999999999999999999998543    


Q ss_pred             cceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        225 CEHLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                       ...|+.|...+..+...|+|.|.++.
T Consensus        98 -~~~~~~l~~~~~~~~~~G~i~l~~~~  123 (126)
T d2ep6a1          98 -QPNCYVLKNKDLEQAFKGVIYLEMDL  123 (126)
T ss_dssp             -CCEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             -CceEEEccccCCCCceeEEEEEEEEE
Confidence             23456666666666678998887753

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.47  E-value=2.7e-14  Score=137.16  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327        147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE  226 (994)
Q Consensus       147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~  226 (994)
                      ...+||||+|.++++..+||++++++.||.|||+|.|.+.+...|.|.|||++.+.+|++||.+.|+|++++...... .
T Consensus        35 ~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~-~  113 (136)
T d1gmia_          35 TFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRH-F  113 (136)
T ss_dssp             CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSE-E
T ss_pred             CCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecCCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcc-e
Confidence            457899999999877667899999999999999999999888899999999999999999999999999998764322 2


Q ss_pred             eEEEEeecCCCCCCCCCeEEEecCC
Q psy16327        227 HLEITLDLMNDSRVSPPLMSVEMPP  251 (994)
Q Consensus       227 ~~~~~l~L~~~~~~~~G~l~v~~~~  251 (994)
                      .  .+++|+     ..|+|.|.+..
T Consensus       114 ~--~w~~L~-----p~G~v~l~v~~  131 (136)
T d1gmia_         114 E--DWIDLE-----PEGKVYVIIDL  131 (136)
T ss_dssp             E--EEEECB-----SSCEEEEEEEE
T ss_pred             e--EEEeCC-----CCcEEEEEEEE
Confidence            3  444554     35887776643

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=5.3e-14  Score=132.64  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=76.1

Q ss_pred             CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327        148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG  223 (994)
Q Consensus       148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~  223 (994)
                      ..+||||+|.+++    +..++|++++||+||+|||+|++.|.+...|.|.|||+|    |+++|.+.|.+.+|......
T Consensus        22 ~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~~~l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~   97 (123)
T d1bdya_          22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA----EDPMSEVTVGVSVLAERCKK   97 (123)
T ss_dssp             CSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTTCEEEEEEEEET----TEEEEEEEEEHHHHHHHHHT
T ss_pred             CCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccccEEEEEEEEcc----ccccCccEEehhheeecccc
Confidence            4579999999965    235779999999999999999999999999999999985    78999999999999875333


Q ss_pred             ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        224 KCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      .....+++++|+     ..|+|.+++.
T Consensus        98 ~~~~~~~W~~L~-----~~Gkl~l~v~  119 (123)
T d1bdya_          98 NNGKAEFWLDLQ-----PQAKVLMCVQ  119 (123)
T ss_dssp             TTTEEEEEEECB-----SSCEEEEEEE
T ss_pred             CCCcccEEEeCC-----CCEEEEEEEE
Confidence            323344566665     4699888764

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=1e-13  Score=132.89  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=79.7

Q ss_pred             CCCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327        146 GLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG  223 (994)
Q Consensus       146 ~f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~  223 (994)
                      .+.++||||+|.++++ +++|++++ +++||.|||+|.|.+.+ ...|.|.|||+|++++|++||.+.|+|.+++..  +
T Consensus        27 ~~g~~Dpyv~v~~~~~-~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~--~  103 (136)
T d1wfja_          27 FLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE--G  103 (136)
T ss_dssp             SSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHH--S
T ss_pred             CCCCCCccEEEEEeee-eEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhccc--C
Confidence            3577999999999765 77888776 69999999999998875 567999999999999999999999999999764  2


Q ss_pred             ccceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327        224 KCEHLEITLDLMNDSRVSPPLMSVEMPPL  252 (994)
Q Consensus       224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~~~  252 (994)
                      .....++.+  .. ++...|+|.|.++..
T Consensus       104 ~~~~~~~~l--~~-~~~~~G~i~l~l~~~  129 (136)
T d1wfja_         104 SIPPTAYNV--VK-DEEYKGEIWVALSFK  129 (136)
T ss_dssp             EEEEEEEEE--EE-TTEEEEEEEEEEEEE
T ss_pred             CcCcEEEEe--cC-CCccCEEEEEEEEEE
Confidence            333444443  22 234569999988753

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.1e-13  Score=124.69  Aligned_cols=95  Identities=24%  Similarity=0.523  Sum_probs=73.0

Q ss_pred             CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327        147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN  222 (994)
Q Consensus       147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~  222 (994)
                      +.++||||++.+++  .+++||+++++++||.|||+|.|.+.+  ...|.|.|||+|.+ +|++||.+.|+|+++..   
T Consensus        24 ~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~~---   99 (126)
T d1rlwa_          24 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKV---   99 (126)
T ss_dssp             HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS-CCEEEEEEEEEGGGSCT---
T ss_pred             CCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC-CCCeEEEEEEEHHHccC---
Confidence            45799999999965  357899999999999999999998864  35899999999876 57899999999999843   


Q ss_pred             CccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327        223 GKCEHLEITLDLMNDSRVSPPLMSVEMP  250 (994)
Q Consensus       223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~  250 (994)
                      +....  .++.|.+   ...|+|.+.+.
T Consensus       100 ~~~~~--~~~~L~~---~~~g~i~~~l~  122 (126)
T d1rlwa_         100 GEKKE--VPFIFNQ---VTEMVLEMSLE  122 (126)
T ss_dssp             TCEEE--EEEEETT---TEEEEEEEEEE
T ss_pred             CCeEE--EEEEccC---CCeEEEEEEEE
Confidence            23333  4555543   23466666553

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=3.1e-13  Score=94.96  Aligned_cols=33  Identities=52%  Similarity=1.068  Sum_probs=32.2

Q ss_pred             CCCCCCceEEEcCCCceEEEecCCcccccCCCC
Q psy16327        595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR  627 (994)
Q Consensus       595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr  627 (994)
                      ||||+|||+++|.+|++|||||.|++|+|+|||
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            689999999999999999999999999999998

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=3.9e-13  Score=94.47  Aligned_cols=33  Identities=55%  Similarity=1.146  Sum_probs=31.8

Q ss_pred             CCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327        509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~  541 (994)
                      +|||+|||+++|.+|++||+||.|++|+|++||
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            489999999999999999999999999999997

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.9e-12  Score=123.22  Aligned_cols=96  Identities=16%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecC-CCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKN-TYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA  219 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~-tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~  219 (994)
                      ..++||||+|.+.|    .+++||+++++ ++||.|||+|+|.+..  ...|.|+|||+|.+++|++||++.|+|+++..
T Consensus        24 ~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          24 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             --CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCC
T ss_pred             CCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCC
Confidence            46789999999954    45788887765 5899999999997654  35899999999999999999999999998843


Q ss_pred             ccCCccceEEEEeecCCCCCC--CCCeEEEecC
Q psy16327        220 HYNGKCEHLEITLDLMNDSRV--SPPLMSVEMP  250 (994)
Q Consensus       220 ~~~~~~~~~~~~l~L~~~~~~--~~G~l~v~~~  250 (994)
                      .      .  -.++|.+..+.  ..+.|.|.++
T Consensus       104 g------~--~~~~L~~~~g~~~~~~~L~v~i~  128 (131)
T d1qasa2         104 G------Y--RHVHLLSKNGDQHPSATLFVKIS  128 (131)
T ss_dssp             E------E--EEEEEECTTSCEEEEEEEEEEEE
T ss_pred             C------C--EEEECCCCCcCCCCCCEEEEEEE
Confidence            2      2  23556554443  2345666653

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=2.3e-12  Score=97.15  Aligned_cols=39  Identities=79%  Similarity=1.398  Sum_probs=36.1

Q ss_pred             cccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327        591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ  629 (994)
Q Consensus       591 ~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~  629 (994)
                      .|..+|||+||++++|++|++|||||.|++|+|+|||++
T Consensus         7 ~d~~gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR~q   45 (45)
T d1tk7a1           7 MDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ   45 (45)
T ss_dssp             SSTTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCT
T ss_pred             CCCCCCCCCCceEEECCCCCEEEEECCCCCEECCCCCcC
Confidence            456789999999999999999999999999999999974

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=4.2e-12  Score=120.78  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=63.2

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...+||||+|.+.    +.+++||+++++|+||.|||.|.|.+..   ...|.|.|||+|.+++|++||.+.|+|+++.
T Consensus        33 ~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~  111 (132)
T d1a25a_          33 NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ  111 (132)
T ss_dssp             TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHT
T ss_pred             CCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcC
Confidence            3568999999983    3457899999999999999999998764   3489999999999999999999999999984

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=8.7e-12  Score=117.90  Aligned_cols=82  Identities=21%  Similarity=0.266  Sum_probs=65.1

Q ss_pred             CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccce
Q psy16327        149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEH  227 (994)
Q Consensus       149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~  227 (994)
                      +.||||+|++++ ++.||++++ +.||.|||.|.|.+.+ ...|.|+|||++.+ +|++||.+.|+|++++...... ..
T Consensus        19 ~~dpYv~l~~~~-~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~~~-~~   94 (128)
T d2cjta1          19 KFNTYVTLKVQN-VKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEG-PG   94 (128)
T ss_dssp             GCEEEEEEEETT-EEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEEEEEEEGGGSCBCSSCC-CC
T ss_pred             CcCeEEEEEeCC-EEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceEEEEEEehhhccCCCCC-CC
Confidence            469999999965 478888876 5599999999998864 56899999999887 5889999999999997654433 23


Q ss_pred             EEEEeec
Q psy16327        228 LEITLDL  234 (994)
Q Consensus       228 ~~~~l~L  234 (994)
                      .|+.|.-
T Consensus        95 ~W~~L~~  101 (128)
T d2cjta1          95 EWLTLDS  101 (128)
T ss_dssp             EEEECBC
T ss_pred             eeEECCc
Confidence            4665543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=4.1e-12  Score=120.58  Aligned_cols=72  Identities=29%  Similarity=0.417  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...+||||+|.+  ++.+++||+++++|+||.|||+|.|.+..    ...|.|+|||+|.+++|++||++.|++...+
T Consensus        36 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l  113 (130)
T d1dqva1          36 NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLEL  113 (130)
T ss_dssp             TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGG
T ss_pred             CCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhh
Confidence            457899999998  34557899999999999999999998753    3579999999999999999999999865443

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=2.1e-11  Score=117.52  Aligned_cols=72  Identities=26%  Similarity=0.427  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      ...+||||+|.+  ++.+++||+++++++||+|||.|.|.+..    ...|.|.|||+|.++++++||.+.|+|+++.
T Consensus        52 ~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~  129 (143)
T d1rsya_          52 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD  129 (143)
T ss_dssp             TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC
T ss_pred             CCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhcc
Confidence            456899999998  44567899999999999999999997753    4689999999999999999999999999983

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.1e-11  Score=95.71  Aligned_cols=41  Identities=56%  Similarity=1.156  Sum_probs=37.1

Q ss_pred             cccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccc
Q psy16327        591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ  631 (994)
Q Consensus       591 ~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~  631 (994)
                      .+..++||+|||++++++|++||+||.|++|+|+|||.+..
T Consensus         6 ~~~~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~~~~   46 (50)
T d1i5hw_           6 SNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNV   46 (50)
T ss_dssp             SSCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSCC
T ss_pred             CCCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCCCCC
Confidence            34568999999999999999999999999999999998654

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=1.1e-11  Score=93.47  Aligned_cols=35  Identities=43%  Similarity=1.016  Sum_probs=33.1

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS  542 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~  542 (994)
                      -++||+||++++|.+|++||+||.|++|+|++||+
T Consensus        10 ~gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR~   44 (45)
T d1tk7a1          10 LGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT   44 (45)
T ss_dssp             TSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEECCCCCc
Confidence            35899999999999999999999999999999985

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5.5e-12  Score=121.38  Aligned_cols=84  Identities=14%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCCCCCeEEEeecc-------------CCceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccc
Q psy16327        147 LLKPNPYIELYVDY-------------KNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIG  208 (994)
Q Consensus       147 f~~~dPyv~v~~~g-------------~~~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG  208 (994)
                      ...+||||+|.+..             .+++||+++++|+||.|||.|.|.+.     ....|.|.|||+|++++|++||
T Consensus        36 ~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG  115 (142)
T d1rh8a_          36 NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLG  115 (142)
T ss_dssp             SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEE
T ss_pred             CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeE
Confidence            56789999999832             22468999999999999999999633     2458999999999999999999


Q ss_pred             eEEeehhhhhcccCCccceEEEEee
Q psy16327        209 EKRLNIYGVLAHYNGKCEHLEITLD  233 (994)
Q Consensus       209 ~~~i~l~~~~~~~~~~~~~~~~~l~  233 (994)
                      ++.|+|.++...   .....|+.|.
T Consensus       116 ~~~i~L~~l~~~---~~~~~W~~L~  137 (142)
T d1rh8a_         116 EVLIDLSSTSHL---DNTPRWYPLK  137 (142)
T ss_dssp             EEEEETTSCGGG---TTCCEEEECB
T ss_pred             EEEEEhHHcCCC---CCceEEEECc
Confidence            999999998544   2234455544

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.9e-11  Score=115.83  Aligned_cols=70  Identities=30%  Similarity=0.558  Sum_probs=61.2

Q ss_pred             CCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327        149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL  218 (994)
Q Consensus       149 ~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~  218 (994)
                      .+||||+|.+  ++.+++||+++++++||.|||.|.|. +..    ...|.|.|||+|++++|++||++.|+|+++.
T Consensus        43 ~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~  119 (138)
T d1ugka_          43 TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE  119 (138)
T ss_dssp             BCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCC
T ss_pred             ccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEccccc
Confidence            3799999999  45557899999999999999999995 443    2479999999999999999999999999983

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.7e-11  Score=115.14  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             CCCCCeEEEeeccC---CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        148 LKPNPYIELYVDYK---NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       148 ~~~dPyv~v~~~g~---~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ..+||||+|.+.+.   ..+||+++++++||+|||.|.|.+..    ...|.|.|||++++++|++||++.|+|.++
T Consensus        42 g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l  118 (138)
T d1wfma_          42 GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT  118 (138)
T ss_dssp             SCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred             CCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHc
Confidence            45899999999542   25789999999999999999998754    358999999999999999999999999997

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=4.7e-11  Score=92.14  Aligned_cols=36  Identities=44%  Similarity=1.094  Sum_probs=33.8

Q ss_pred             CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327        508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE  543 (994)
Q Consensus       508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~  543 (994)
                      ..+||+||++++|.+||+||+||.|++|+|++||..
T Consensus         9 ~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~~   44 (50)
T d1i5hw_           9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            458999999999999999999999999999999964

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.8e-11  Score=89.96  Aligned_cols=34  Identities=35%  Similarity=1.056  Sum_probs=22.2

Q ss_pred             CCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      +.+||+||+++.|++|++|||||+|++|+|++|.
T Consensus         6 ~~~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr   39 (46)
T d1jmqa_           6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR   39 (46)
T ss_dssp             SCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTT
T ss_pred             cCCCCCCceEEECCCCCEEEEECCCCCEecCCCC
Confidence            4456666666666666666666666666666663

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.5e-11  Score=88.74  Aligned_cols=40  Identities=45%  Similarity=0.932  Sum_probs=36.3

Q ss_pred             CCCCCCCCcceeeccCcceeeeccCCCccccCCCCCCCCC
Q psy16327        639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPK  678 (994)
Q Consensus       639 ~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~  678 (994)
                      .+.+||+|||++.|.+|++|||||++++|+|+|||.+.+.
T Consensus         5 ~~~~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~~~~   44 (46)
T d1jmqa_           5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS   44 (46)
T ss_dssp             SSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSSSC
T ss_pred             ccCCCCCCceEEECCCCCEEEEECCCCCEecCCCCccccC
Confidence            3578999999999999999999999999999999986543

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=2.1e-10  Score=109.29  Aligned_cols=71  Identities=23%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ...+||||+|.+.    ...++||+++++|+||.|||+|.|.+..    ...|.|.|||++++++|++||.+.|++.++
T Consensus        33 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          33 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence            3468999999982    2346789999999999999999998864    348999999999999999999999999764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=3.1e-10  Score=108.50  Aligned_cols=71  Identities=25%  Similarity=0.245  Sum_probs=59.1

Q ss_pred             CCCCCCeEEEee--ccC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYV--DYK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~--~g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ...+||||+|.+  ++.  .++||++++++.||.|||+|.|.+...    ..|.|.|||+|.++++++||++.|++.+.
T Consensus        33 ~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          33 SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             --CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             CCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            456899999998  322  246899999999999999999988643    36999999999999999999999998754

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.4e-10  Score=105.46  Aligned_cols=74  Identities=30%  Similarity=0.473  Sum_probs=57.0

Q ss_pred             CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCC--CcccceEEeehh
Q psy16327        147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRR--DCTIGEKRLNIY  215 (994)
Q Consensus       147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~--d~~lG~~~i~l~  215 (994)
                      ...+||||+|.+-    +..++||+++++++||.|||.|.|. +..    ...|.|.|||++.++.  +++||++.|+|+
T Consensus        32 ~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~  111 (125)
T d2bwqa1          32 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE  111 (125)
T ss_dssp             SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred             CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEch
Confidence            4678999999982    2346899999999999999999995 443    3479999999998744  569999999999


Q ss_pred             hhhcc
Q psy16327        216 GVLAH  220 (994)
Q Consensus       216 ~~~~~  220 (994)
                      ++...
T Consensus       112 ~~~~~  116 (125)
T d2bwqa1         112 TALLD  116 (125)
T ss_dssp             GCCCS
T ss_pred             hcCCC
Confidence            98543

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=7.1e-10  Score=108.39  Aligned_cols=70  Identities=23%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327        147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYG  216 (994)
Q Consensus       147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~  216 (994)
                      ...+||||+|.+...    ..+||+++++++||+|||+|.|.+.+.    ..|.|.|||++.++++++||++.|++..
T Consensus        43 ~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~  120 (157)
T d1uowa_          43 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS  120 (157)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTC
T ss_pred             CCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEeccc
Confidence            457999999998431    246899999999999999999988643    4899999999999999999999999965

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.9e-10  Score=78.73  Aligned_cols=32  Identities=53%  Similarity=1.182  Sum_probs=30.1

Q ss_pred             CCCCCceEEeCCC-CCeEEEeCCCCceeccCCC
Q psy16327        510 PLPPGWELRRDPR-GRVYYVDHNTRSTTWQRPN  541 (994)
Q Consensus       510 ~lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P~  541 (994)
                      .||+||++++|+. |++||+||.|++|+|++|.
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            4999999999985 9999999999999999996

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6e-10  Score=79.04  Aligned_cols=31  Identities=58%  Similarity=1.188  Sum_probs=22.3

Q ss_pred             CCCCceEeecC-CCCeeeeeCCCCcccccCCC
Q psy16327        374 LPPGWEIRQDT-YGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       374 lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P~  404 (994)
                      ||+||+++.|+ .|+.||||+.|++|+|++|.
T Consensus         2 LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             cCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            67777777776 57777777777777777763

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.8e-09  Score=76.59  Aligned_cols=34  Identities=32%  Similarity=0.700  Sum_probs=29.8

Q ss_pred             CCCCCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327        373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL  406 (994)
Q Consensus       373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l  406 (994)
                      +++..|+++.+++||+||||+.|++|+|++|.+|
T Consensus         3 ~~~s~W~e~~~~~Gr~YY~N~~T~~s~We~P~el   36 (37)
T d2rm0w1           3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL   36 (37)
T ss_dssp             CCSCCEEEEECTTCCEEEEETTTTEEESSCCSSC
T ss_pred             CCccCCEEEECCCCCEEEEECCCCCEeCCCcccc
Confidence            4567799999999999999999999999999776

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=7.9e-10  Score=106.45  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=60.8

Q ss_pred             CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      ...+||||+|.+.+    ..++||+++++|+||.|||.|.|.|..    ...|.|.|||++.+++|++||.+.|+|..+
T Consensus        38 ~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2          38 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred             CCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence            45689999999843    225789999999999999999997764    357999999999999999999999999765

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9e-09  Score=96.00  Aligned_cols=67  Identities=18%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             CCCCeEEEeecc-----CCceeeee--ecCCCCCCcceE-EEE-Eec--CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327        149 KPNPYIELYVDY-----KNPKTTRV--VKNTYQPKWNEE-FTV-LVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV  217 (994)
Q Consensus       149 ~~dPyv~v~~~g-----~~~~kT~v--~k~tlnP~Wne~-f~~-~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~  217 (994)
                      +.||||+|.+-|     ..++||++  .+|++||.|||+ |.+ .+.  +...|.|.|||+|    |++||++.|+|+.+
T Consensus        17 ~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d----~~~lG~~~ipl~~l   92 (122)
T d2zkmx2          17 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINAL   92 (122)
T ss_dssp             CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEEEEEEEEGGGB
T ss_pred             CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC----CCEEEEEEEEcccC
Confidence            579999999854     33344443  478999999986 333 343  3458999999985    78999999999988


Q ss_pred             hc
Q psy16327        218 LA  219 (994)
Q Consensus       218 ~~  219 (994)
                      ..
T Consensus        93 ~~   94 (122)
T d2zkmx2          93 NS   94 (122)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=8.4e-09  Score=69.29  Aligned_cols=28  Identities=39%  Similarity=0.860  Sum_probs=24.1

Q ss_pred             CCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        376 PGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      ..|.++.+++||+||||..|++|+|++|
T Consensus         2 s~W~e~~~~~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDASGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCC
T ss_pred             CccEEEECCCCCEEEeECCCCCEecCCC
Confidence            3588888889999999999999999887

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-08  Score=68.36  Aligned_cols=27  Identities=37%  Similarity=0.906  Sum_probs=23.2

Q ss_pred             CceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        377 GWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      .|.++.+++||+||||..|++|+|++|
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           2 MWTEHKSPDGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CEEEEEETTTEEEEEETTTTEEEESCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            588888888888888888888888887

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.6e-08  Score=69.19  Aligned_cols=34  Identities=26%  Similarity=0.552  Sum_probs=29.4

Q ss_pred             CceEeecCCCCeeeeeCCCCcccccCCCCCCCCc
Q psy16327        377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGW  410 (994)
Q Consensus       377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW  410 (994)
                      .|.++.+++|++||||..|++|+|++|..|-...
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~~~~~~   35 (38)
T d2dk1a1           2 RWVEGITSEGYHYYYDLISGASQWEKPEGFQGDL   35 (38)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTTCCCCC
T ss_pred             CCeEEECCCCCEEEEECCCCCEecCCChhHhccc
Confidence            5999999999999999999999999998775443

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=9.7e-08  Score=71.51  Aligned_cols=29  Identities=34%  Similarity=0.834  Sum_probs=23.7

Q ss_pred             CCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327        376 PGWEIRQDTYGRRYYVDHNTRSSSWERPQ  404 (994)
Q Consensus       376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P~  404 (994)
                      .+|.++.+++||+||||+.|++|+|++|.
T Consensus        14 ~~W~e~~~~~Gr~YYyN~~T~es~We~P~   42 (46)
T d1o6wa2          14 NGWKAAKTADGKVYYYNPTTRETSWTIPA   42 (46)
T ss_dssp             HTCEEEECTTCCEEEEETTTTEEESSCCC
T ss_pred             CCCeEEECCCCCEEEEECCCCCEecCCCc
Confidence            36888888888888888888888888874

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.7e-07  Score=67.16  Aligned_cols=32  Identities=25%  Similarity=0.706  Sum_probs=30.0

Q ss_pred             CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       405 ~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      .++..|+++.+++|++||+|+.|++|+|++|.
T Consensus         3 ~~~s~W~e~~~~~Gr~YY~N~~T~~s~We~P~   34 (37)
T d2rm0w1           3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ   34 (37)
T ss_dssp             CCSCCEEEEECTTCCEEEEETTTTEEESSCCS
T ss_pred             CCccCCEEEECCCCCEEEEECCCCCEeCCCcc
Confidence            46788999999999999999999999999996

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.8e-07  Score=62.71  Aligned_cols=28  Identities=36%  Similarity=0.936  Sum_probs=26.6

Q ss_pred             CCceeeeCCCCCeEEEeCCCCcccccCC
Q psy16327        408 PGWELRRDPRGRVYYVDHNTRSTTWQRP  435 (994)
Q Consensus       408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P  435 (994)
                      ..|.+..+++|++||+|..|++|+|++|
T Consensus         2 s~W~e~~~~~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDASGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCC
T ss_pred             CccEEEECCCCCEEEeECCCCCEecCCC
Confidence            4699999999999999999999999998

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2e-07  Score=62.05  Aligned_cols=27  Identities=37%  Similarity=1.025  Sum_probs=26.1

Q ss_pred             CceeeeCCCCCeEEEeCCCCcccccCC
Q psy16327        409 GWELRRDPRGRVYYVDHNTRSTTWQRP  435 (994)
Q Consensus       409 gW~~~~~~~g~~yy~n~~t~~t~w~~P  435 (994)
                      .|.+..+++|++||+|..|++|+|++|
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           2 MWTEHKSPDGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CEEEEEETTTEEEEEETTTTEEEESCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            599999999999999999999999998

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=6.1e-07  Score=67.13  Aligned_cols=30  Identities=37%  Similarity=0.897  Sum_probs=28.4

Q ss_pred             CCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        407 PPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       407 p~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      ..+|.++.+++||+||||+.|++|+|++|.
T Consensus        13 ~~~W~e~~~~~Gr~YYyN~~T~es~We~P~   42 (46)
T d1o6wa2          13 ENGWKAAKTADGKVYYYNPTTRETSWTIPA   42 (46)
T ss_dssp             HHTCEEEECTTCCEEEEETTTTEEESSCCC
T ss_pred             cCCCeEEECCCCCEEEEECCCCCEecCCCc
Confidence            368999999999999999999999999997

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.9e-06  Score=56.11  Aligned_cols=30  Identities=47%  Similarity=0.883  Sum_probs=24.1

Q ss_pred             CCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327        373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP  403 (994)
Q Consensus       373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P  403 (994)
                      .|||||....|..| +||++--|++|+|++|
T Consensus         2 dLPpGW~ki~D~~G-~YYWHiptGttQwe~P   31 (33)
T d2ho2a1           2 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP   31 (33)
T ss_dssp             CSCTTEEEEECSSC-EEEEETTTTEEESSCC
T ss_pred             CCCCcceeeecCCC-ceEEEecCCcccccCC
Confidence            47888888888888 8888888888888877

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.5e-06  Score=55.04  Aligned_cols=31  Identities=39%  Similarity=0.831  Sum_probs=29.6

Q ss_pred             CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327        405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN  436 (994)
Q Consensus       405 ~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~  436 (994)
                      +||+||++..|..| +||..--|++++|++|.
T Consensus         2 dLPpGW~ki~D~~G-~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           2 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             CSCTTEEEEECSSC-EEEEETTTTEEESSCCC
T ss_pred             CCCCcceeeecCCC-ceEEEecCCcccccCCC
Confidence            69999999999999 99999999999999995

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.3e-06  Score=60.47  Aligned_cols=29  Identities=24%  Similarity=0.619  Sum_probs=27.3

Q ss_pred             CceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327        409 GWELRRDPRGRVYYVDHNTRSTTWQRPNS  437 (994)
Q Consensus       409 gW~~~~~~~g~~yy~n~~t~~t~w~~P~~  437 (994)
                      .|.+..+++|++||+|..|++++|++|..
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~   30 (38)
T d2dk1a1           2 RWVEGITSEGYHYYYDLISGASQWEKPEG   30 (38)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTT
T ss_pred             CCeEEECCCCCEEEEECCCCCEecCCChh
Confidence            59999999999999999999999999973

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0018  Score=44.89  Aligned_cols=27  Identities=33%  Similarity=0.779  Sum_probs=17.3

Q ss_pred             CCCceeeeCCCCCeEEEeCCCCccccc
Q psy16327        407 PPGWELRRDPRGRVYYVDHNTRSTTWQ  433 (994)
Q Consensus       407 p~gW~~~~~~~g~~yy~n~~t~~t~w~  433 (994)
                      .+.||+..++..-.||+||.+.+|+|+
T Consensus        12 ~~PWeRait~n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3          12 QGPWERAISPNKVPYYINHETQTTCWD   38 (38)
T ss_dssp             CTTEEEEECTTSCEEEEETTTTEEESS
T ss_pred             ccchhhhccccCCCeEeecccccccCC
Confidence            345666666666666666666666663

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0021  Score=44.57  Aligned_cols=26  Identities=35%  Similarity=0.811  Sum_probs=24.1

Q ss_pred             CCceEEeCCCCCeEEEeCCCCceecc
Q psy16327        513 PGWELRRDPRGRVYYVDHNTRSTTWQ  538 (994)
Q Consensus       513 ~gW~~~~~~~gr~yy~~~~t~~t~w~  538 (994)
                      +-||..++++.-+||+||.+.+|+|+
T Consensus        13 ~PWeRait~n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3          13 GPWERAISPNKVPYYINHETQTTCWD   38 (38)
T ss_dssp             TTEEEEECTTSCEEEEETTTTEEESS
T ss_pred             cchhhhccccCCCeEeecccccccCC
Confidence            44999999999999999999999995

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.058  Score=33.54  Aligned_cols=24  Identities=46%  Similarity=0.877  Sum_probs=11.3

Q ss_pred             CCCCceeeeCCCCCeEEEeCCCCcc
Q psy16327        406 LPPGWELRRDPRGRVYYVDHNTRST  430 (994)
Q Consensus       406 lp~gW~~~~~~~g~~yy~n~~t~~t  430 (994)
                      ||+||.+..|..| +||..--|++|
T Consensus         2 LPpGW~~i~D~ag-~YyWHiPtGtT   25 (26)
T d2ysca1           2 LPPGWRKIHDAAG-TYYWHVPSGST   25 (26)
T ss_dssp             CCTTEEEEEETTE-EEEEESSSCCE
T ss_pred             cCccceeeeccCc-eEEEeccCCcc
Confidence            5555555554433 34444444443

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.059  Score=33.52  Aligned_cols=25  Identities=40%  Similarity=0.820  Sum_probs=21.6

Q ss_pred             CCCCceEeecCCCCeeeeeCCCCccc
Q psy16327        374 LPPGWEIRQDTYGRRYYVDHNTRSSS  399 (994)
Q Consensus       374 lp~~w~~~~~~~G~~yy~n~~t~~t~  399 (994)
                      |||||..-.|..| +||++--|++|+
T Consensus         2 LPpGW~~i~D~ag-~YyWHiPtGtTQ   26 (26)
T d2ysca1           2 LPPGWRKIHDAAG-TYYWHVPSGSTQ   26 (26)
T ss_dssp             CCTTEEEEEETTE-EEEEESSSCCEE
T ss_pred             cCccceeeeccCc-eEEEeccCCccC
Confidence            8999999888887 899998888774