Psyllid ID: psy16329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM
Secondary Structure (PSIPRED)
cEEEEEEEcEEEccccccEEEEEEEccccccEEEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEccccccEEEEEEccccEEEEEEEEEcccccccccEEEEEEcccccccccccccccEEEEEEcccccEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEccccccHccccccccccccccccccccccccccccccccccccccHHHHccHccEEEEcccccccHHHHEccHHHHccccccEccccccEEEEEEEccccEEEEEEEEEEccccccccEEEEEEccccccHcHccccccEEEEEccccccEEEEccc
Coil and Loop (DISEMBL)
MLFLYFLVFRAAkfsnvyhltcyfptnfgsdntclyylgfrgessplhrhgvticnyettpsladhkvdnmnsfpvmahnhgghccgeedhshddtelgIQYSLYkhidtenveclnetvdgsgktifkpwedrlnkekfvesdvdsellinipftsniklkglrliggdsdshpnriklfknrpgmtfddvnaspdqefelnqdsdasieypim
Flexible Loop (DISEMBL)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNetvdgsgktifkpwedrlnKEKFVesdvdsellinipftsniklkGLRLiggdsdshpnRIKLFKNRPGMTFDDVnaspdqefelnqdsdasieypim
Low Complexity Region (SEG)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM
Disordered region (IsUnstruct)
*LFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG**********************************************
Disordered Region (DISOPRED)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNM*SF*************************IQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG**DSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDA*IEYPIM
Disordered Region (DISEMBL)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM
Disordered Region (DISPRO)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPV****************HDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9VK68	211	PITH domain-containing pr	no	N/A	0.613	0.625	0.583	6e-41
Q29L80	211	PITH domain-containing pr	yes	N/A	0.604	0.616	0.589	9e-41
Q6DJI5	209	PITH domain-containing pr	N/A	N/A	0.627	0.645	0.514	1e-36
Q6NYX8	210	PITH domain-containing pr	yes	N/A	0.548	0.561	0.550	9e-36
Q9GZP4	211	PITH domain-containing pr	yes	N/A	0.590	0.601	0.503	2e-34
Q8BWR2	211	PITH domain-containing pr	yes	N/A	0.590	0.601	0.496	6e-34
Q95ZI6	208	PITH domain-containing pr	yes	N/A	0.623	0.644	0.438	2e-27
Q54Z24	202	PITH domain-containing pr	yes	N/A	0.6	0.638	0.427	9e-19
Q9P7A1	207	PITH domain-containing pr	yes	N/A	0.613	0.637	0.352	3e-14
Q9USR1	290	Thioredoxin-like protein	no	N/A	0.437	0.324	0.349	2e-07

>sp|Q9VK68|PITH1_DROME PITH domain-containing protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1

 Score =  167 bits (422), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 100/137 (72%), Gaps = 5/137 (3%)

Query: 78  AHNHGG--HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
           +H+HGG  H   + DH+    E+GI+YSLY  ID +NVECLNE  DG GK++FKP+E R 
Sbjct: 6   SHDHGGCSHEASDVDHA---LEMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQ 62

Query: 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
           +  K+VESD D ELL NIPFT NIKLKG+ + G + DSHPN +K+FKNRP MTFDD  A 
Sbjct: 63  DLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAK 122

Query: 196 PDQEFELNQDSDASIEY 212
           PDQEF+L +D+   IEY
Sbjct: 123 PDQEFQLTRDARGEIEY 139

Drosophila melanogaster (taxid: 7227)

>sp|Q29L80|PITH1_DROPS PITH domain-containing protein GA19395 OS=Drosophila pseudoobscura pseudoobscura GN=GA19395 PE=3 SV=1

 Score =  166 bits (421), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 100/139 (71%), Gaps = 9/139 (6%)

Query: 78  AHNHGGHCCGEE----DHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWED 133
           +H+HGG  CG E    DH+    E+GI+YSLY  ID EN+ECLNE  +GSGKT+FKP+E 
Sbjct: 6   SHDHGG--CGHEATDVDHA---LEMGIEYSLYTKIDAENLECLNEETEGSGKTVFKPYES 60

Query: 134 RLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN 193
           R +  KFV+SD D ELL NIPFT NIKLKG+ + G + DSHPN++K+FKNRP MTFDD  
Sbjct: 61  RQDMSKFVQSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK 120

Query: 194 ASPDQEFELNQDSDASIEY 212
              DQEFEL +D    IEY
Sbjct: 121 VKVDQEFELTRDPRGEIEY 139

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6DJI5|PITH1_XENLA PITH domain-containing protein 1 OS=Xenopus laevis GN=pithd1 PE=2 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 78  AHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNK 137
            H+HGG C  E + S D  E G++Y L++ ID + ++CLNE+ +GSG+++F+ WE+R ++
Sbjct: 4   GHSHGGGCSCESEPS-DGPERGLEYGLFRKIDLDKLQCLNESREGSGRSVFRAWEERNDR 62

Query: 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD 197
            +FVESD D ELL NIPFT N+KLKG+ LIG DSD+HP  ++LFKN P M+FDD     D
Sbjct: 63  TRFVESDDDEELLFNIPFTGNVKLKGIVLIGEDSDTHPAELRLFKNVPHMSFDDTGREAD 122

Query: 198 QEFELNQDSDASIEYP 213
           Q F LN D + ++EYP
Sbjct: 123 QTFSLNIDVNGNLEYP 138

Xenopus laevis (taxid: 8355)

>sp|Q6NYX8|PITH1_DANRE PITH domain-containing protein 1 OS=Danio rerio GN=pithd1 PE=2 SV=1

 Score =  150 bits (378), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 86/118 (72%)

Query: 96  TELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPF 155
            E G++Y LY+ ID E ++CLNE+ DG GK +FKPW+ R ++ KFVESD D ELL NIPF
Sbjct: 22  AERGVEYELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRNKFVESDADEELLFNIPF 81

Query: 156 TSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYP 213
           T ++KLKG+ + G D +SHP  I+LFKN P M+FDD +  P+Q F LN+D  A +EYP
Sbjct: 82  TGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTSREPEQAFRLNRDPRAELEYP 139

Danio rerio (taxid: 7955)

>sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 2/129 (1%)

Query: 84  HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVES 143
            C  E +   +  + G+ Y LY  ID E ++CLNE+ +GSG+ +FKPWE+R ++ KFVES
Sbjct: 13  RCAAEREEPPE--QRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVES 70

Query: 144 DVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELN 203
           D D ELL NIPFT N+KLKG+ ++G D DSHP+ ++L+KN P M+FDD    PDQ F LN
Sbjct: 71  DADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLN 130

Query: 204 QDSDASIEY 212
           +D    +EY
Sbjct: 131 RDLTGELEY 139

Homo sapiens (taxid: 9606)

>sp|Q8BWR2|PITH1_MOUSE PITH domain-containing protein 1 OS=Mus musculus GN=Pithd1 PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 2/129 (1%)

Query: 84  HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVES 143
            C  E +   +  + G+ Y LY  ID E ++CLNE+ +GSG+ +FKPWE+R ++ KFVES
Sbjct: 13  RCAAEREEPPE--QRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVES 70

Query: 144 DVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELN 203
           D D ELL NIPFT N+KLKG+ ++G D DSHP+ ++L+KN P M+FDD    P+Q F LN
Sbjct: 71  DADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPEQTFSLN 130

Query: 204 QDSDASIEY 212
           +D    +EY
Sbjct: 131 RDITGELEY 139

Mus musculus (taxid: 10090)

>sp|Q95ZI6|PITH1_CAEEL PITH domain-containing protein ZK353.9 OS=Caenorhabditis elegans GN=ZK353.9 PE=3 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 88/139 (63%), Gaps = 5/139 (3%)

Query: 78  AHNHGGHCCGEE--DHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
           +H H  +C  E   +   DD     +Y +  +ID E V  LNE+VDG+GK +FK  E R 
Sbjct: 3   SHGHSHNCAAEHIPEVPGDDV---YRYDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKRD 59

Query: 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
           ++ ++VESD D ELL NIPFT +++L GL +IG +  SHP +I+LFK+R  M+FDD +  
Sbjct: 60  DRLEYVESDCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCSIE 119

Query: 196 PDQEFELNQDSDASIEYPI 214
            DQE +L QD    ++YP+
Sbjct: 120 ADQEIDLKQDPQGLVDYPL 138

Caenorhabditis elegans (taxid: 6239)

>sp|Q54Z24|PITH1_DICDI PITH domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0277951 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 2/131 (1%)

Query: 83  GHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVE 142
            H C +  HSH   + GI+YSL +++DT  + CLNE V GS + IFK WEDR + + FVE
Sbjct: 2   AHQCNDSSHSHG-VDDGIEYSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDRHDLKHFVE 60

Query: 143 SDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNA-SPDQEFE 201
           S  D EL+INIPF +  ++K + +IGGD  S PN++K + N   + F ++N+ +  QE+ 
Sbjct: 61  SCDDEELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWN 120

Query: 202 LNQDSDASIEY 212
           L++D +  I Y
Sbjct: 121 LHEDFEGQIGY 131

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7A1|PITH1_SCHPO PITH domain-containing protein P35G2.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.02 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 82  GGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFV 141
           G H C  +   H   E G   +LY  I  E++  LNE V  SGK +FKPW+ R +    V
Sbjct: 3   GPHHCSADCDEHP-FESGPNDTLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIV 61

Query: 142 ESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFD---DVNASPDQ 198
           ESD D +LL  +PF     LK + +    +++ P+   LF NR  + FD   DV A+   
Sbjct: 62  ESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETF 121

Query: 199 EFELNQDSDASIEYPI 214
           EF L  +     E+P+
Sbjct: 122 EFPLTFEGSHIFEFPV 137

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9USR1|TXL1_SCHPO Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=txl1 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 103 SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLK 162
           SL   I+   +ECLN+  D   K+ F       N   F+ESDVD +L+I IPF   +K+ 
Sbjct: 128 SLQGCIENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVH 182

Query: 163 GLRL--IGGDSDSHPNRIKLFKNRP-GMTFDDVNA-SPDQEFE 201
            + +  + G++ S P  IKL+ N+P  ++F+D  + +P Q  E
Sbjct: 183 SIAITPVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIE 225

Has a role in cellular detoxification of alkyl hydroperoxide.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
91083701	205	PREDICTED: similar to AGAP010237-PA [Tri	0.6	0.629	0.610	1e-41
242000056	211	conserved hypothetical protein [Ixodes s	0.641	0.654	0.574	2e-41
157114542	212	hypothetical protein AaeL_AAEL006908 [Ae	0.623	0.632	0.611	7e-41
346471285	202	hypothetical protein [Amblyomma maculatu	0.548	0.584	0.593	3e-40
332376971	206	unknown [Dendroctonus ponderosae]	0.581	0.606	0.585	6e-40
170035221	211	thioredoxin family Trp26 [Culex quinquef	0.632	0.644	0.582	6e-40
158299313	212	AGAP010237-PA [Anopheles gambiae str. PE	0.627	0.636	0.570	7e-40
427796163	271	Putative thioredoxin-like protein, parti	0.548	0.435	0.593	1e-39
350424292	202	PREDICTED: PITH domain-containing protei	0.572	0.608	0.617	1e-39
195436917	207	GK18266 [Drosophila willistoni] gi|19416	0.627	0.652	0.577	1e-39

>gi|91083701|ref|XP_969551.1| PREDICTED: similar to AGAP010237-PA [Tribolium castaneum] gi|270006812|gb|EFA03260.1| hypothetical protein TcasGA2_TC013194 [Tribolium castaneum]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 104/131 (79%), Gaps = 2/131 (1%)

Query: 83  GHCCGEEDHSHDDT-ELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFV 141
           G CC E DH H DT E+G++YSLY  ID  N+ECLNE  +G+GKT+FKPWE+RLN + +V
Sbjct: 5   GRCC-EGDHQHRDTPEMGVEYSLYTKIDKNNLECLNEATEGTGKTVFKPWEERLNFDVYV 63

Query: 142 ESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFE 201
           ESD D ELL NIPFT N+KLKG+ +IG D+D+HPN++++FKNRP MTFDDV+A  DQEF+
Sbjct: 64  ESDADEELLFNIPFTGNVKLKGIIIIGEDADTHPNKVRMFKNRPRMTFDDVSAVADQEFQ 123

Query: 202 LNQDSDASIEY 212
           L+ D+   +EY
Sbjct: 124 LHVDNTGLLEY 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242000056|ref|XP_002434671.1| conserved hypothetical protein [Ixodes scapularis] gi|215498001|gb|EEC07495.1| conserved hypothetical protein [Ixodes scapularis]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 104/141 (73%), Gaps = 3/141 (2%)

Query: 77  MAHNHGGH---CCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWED 133
           M H+HG H    CG         +LGIQYSLY  ID +NV+CLNE V+GSGK +FKPWE 
Sbjct: 1   MPHDHGDHGHDSCGHGHQHSQGPDLGIQYSLYSKIDLDNVQCLNEEVEGSGKLVFKPWEL 60

Query: 134 RLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN 193
           RL  +KFV+SD D ELL NIPFT N+KLK + ++GG+S SHP++I++FKNRP MTFDD  
Sbjct: 61  RLELDKFVDSDADEELLFNIPFTGNVKLKSILVMGGESGSHPSKIRMFKNRPRMTFDDAR 120

Query: 194 ASPDQEFELNQDSDASIEYPI 214
           A P+QEFEL+ D+  ++EYP+
Sbjct: 121 AEPEQEFELHPDNTGTLEYPV 141

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114542|ref|XP_001658071.1| hypothetical protein AaeL_AAEL006908 [Aedes aegypti] gi|157125666|ref|XP_001654418.1| hypothetical protein AaeL_AAEL010295 [Aedes aegypti] gi|108873534|gb|EAT37759.1| AAEL010295-PA [Aedes aegypti] gi|108877229|gb|EAT41454.1| AAEL006908-PA [Aedes aegypti]

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 101/134 (75%)

Query: 79  HNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE 138
           H+HGG C  E     D+ E+GIQYSLY+ IDT NVECLNE  +GSGKT+FKP+  RL+ +
Sbjct: 7   HDHGGACAHEALGIEDELEMGIQYSLYEKIDTINVECLNEEEEGSGKTVFKPYSQRLDFD 66

Query: 139 KFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQ 198
           K V SD D ELL NIPFT NIKLKG+ ++G + DSHP +++LFKNRP MTFDDV+A  DQ
Sbjct: 67  KHVTSDADEELLFNIPFTGNIKLKGIIVVGANDDSHPKKMRLFKNRPKMTFDDVSAQADQ 126

Query: 199 EFELNQDSDASIEY 212
           EFEL +D +  IEY
Sbjct: 127 EFELERDPNGVIEY 140

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471285|gb|AEO35487.1| hypothetical protein [Amblyomma maculatum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 97/118 (82%)

Query: 97  ELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFT 156
           E+G+QYSLY  ID +NV+CLNE  +GSGK++FKPWE RL+++K+V+SD D ELL NIPFT
Sbjct: 27  EMGVQYSLYSKIDLDNVQCLNEVKEGSGKSVFKPWEQRLDRDKYVDSDADEELLFNIPFT 86

Query: 157 SNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPI 214
            N+KLK + ++GGD+ +HP+++++FKNRP MTF D  A+P+QEFEL  DS  S+EYP+
Sbjct: 87  GNVKLKSILVVGGDAATHPSKVRIFKNRPQMTFSDARAAPEQEFELQHDSSGSLEYPL 144

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376971|gb|AEE63625.1| unknown [Dendroctonus ponderosae]

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query: 85  CCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESD 144
           CCG+  H+HD+ E GIQYSLY  I+T ++ECLNE V  SGKT+FK WE+RLN++ FV+SD
Sbjct: 7   CCGDATHNHDEAERGIQYSLYTKINTNDLECLNEMVRDSGKTVFKAWENRLNRDMFVQSD 66

Query: 145 VDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQ 204
           +D ELL NIPF  N+KL G+ +IG  +D+HP+R++LFKNR  MTFDDV    DQEFEL +
Sbjct: 67  MDEELLFNIPFVGNVKLTGIIVIGDSTDAHPSRMRLFKNREFMTFDDVACEADQEFELQK 126

Query: 205 DSDASIEY 212
           D++  +EY
Sbjct: 127 DTEGVLEY 134

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035221|ref|XP_001845469.1| thioredoxin family Trp26 [Culex quinquefasciatus] gi|167877119|gb|EDS40502.1| thioredoxin family Trp26 [Culex quinquefasciatus]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 3/139 (2%)

Query: 77  MAHNHG---GHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWED 133
           M+HNH    G C  E     D+ E+GIQYSLY+ ID  NVECLNE  +GSG+T+FKP+  
Sbjct: 1   MSHNHSHGHGGCAHEALGIDDELEMGIQYSLYEKIDMLNVECLNEESEGSGRTVFKPYAQ 60

Query: 134 RLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN 193
           RL+ +KFV SD D ELL N+PFT N+KLKG+ ++G + DSHP +++LFKNRP MTFDDV 
Sbjct: 61  RLDFDKFVTSDADEELLFNVPFTGNVKLKGVIVVGANDDSHPKKMRLFKNRPKMTFDDVG 120

Query: 194 ASPDQEFELNQDSDASIEY 212
           A  DQEFEL +DS+  IEY
Sbjct: 121 AQADQEFELERDSNGVIEY 139

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299313|ref|XP_319425.2| AGAP010237-PA [Anopheles gambiae str. PEST] gi|157014304|gb|EAA13935.2| AGAP010237-PA [Anopheles gambiae str. PEST]

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 102/135 (75%)

Query: 78  AHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNK 137
            H+HGG C  E     ++ E+GI YSLY+ ID  NVECLNE ++GSGKT+FKP+ +RLN 
Sbjct: 6   GHSHGGGCEHEALGIENELEIGIHYSLYEKIDMNNVECLNEELEGSGKTVFKPYNERLNH 65

Query: 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD 197
           +K+V+SD D ELL NIPFT N+KLKG+ +IG D ++HP +++LFKNRP MTFDD +AS D
Sbjct: 66  DKYVKSDADEELLFNIPFTGNVKLKGIIIIGADDETHPKKMRLFKNRPKMTFDDTSASAD 125

Query: 198 QEFELNQDSDASIEY 212
           QEF L +D++   EY
Sbjct: 126 QEFSLEKDANGVFEY 140

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796163|gb|JAA63533.1| Putative thioredoxin-like protein, partial [Rhipicephalus pulchellus]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 95/118 (80%)

Query: 97  ELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFT 156
           E G+QYSLY  ID +NV+CLNE  +GSGK +FKPWE RL++EK+V+SD D ELL NIPFT
Sbjct: 84  ETGLQYSLYSKIDLDNVQCLNEMKEGSGKLVFKPWEQRLDREKYVDSDADEELLFNIPFT 143

Query: 157 SNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPI 214
            N+KLK + ++GGD+  HP+++++FKNRP MTFDD  A+P+QEFEL  D+  ++EYP+
Sbjct: 144 GNVKLKSILIVGGDAGMHPSKVRMFKNRPQMTFDDARATPEQEFELQPDASGNLEYPV 201

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424292|ref|XP_003493747.1| PREDICTED: PITH domain-containing protein GA19395-like [Bombus impatiens]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 99/123 (80%)

Query: 92  SHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLI 151
           +H+D ELG+QY+LY+ ID EN+ECLNE  + +G T+FKPWE+RL++ K+VESD+D+ELL 
Sbjct: 10  THNDAELGVQYNLYQKIDVENIECLNEFEEATGATVFKPWENRLDRNKYVESDMDNELLF 69

Query: 152 NIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIE 211
           NIPFT NIKLKGL +IGG+ D HPN++KL+KNRP MTFDDV   P+QEFEL  D+    E
Sbjct: 70  NIPFTGNIKLKGLIIIGGEDDLHPNKVKLYKNRPHMTFDDVATEPEQEFELCVDTMGVHE 129

Query: 212 YPI 214
           Y +
Sbjct: 130 YSL 132

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436917|ref|XP_002066392.1| GK18266 [Drosophila willistoni] gi|194162477|gb|EDW77378.1| GK18266 [Drosophila willistoni]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 99/135 (73%)

Query: 78  AHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNK 137
           +H+HG  C  E        E+GI+YSLY  ID +N+ECLNE ++ SGKT+FKP+E+RL+ 
Sbjct: 6   SHSHGQGCGHEATDVDHALEMGIEYSLYTKIDKDNMECLNEEIENSGKTVFKPYENRLDM 65

Query: 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD 197
            K+VESD D ELL NIPFT NIKLKG+ + G + D+HPN++KLFKNRP MTFDD    PD
Sbjct: 66  TKYVESDADEELLFNIPFTGNIKLKGIIICGANDDTHPNKVKLFKNRPKMTFDDAKVKPD 125

Query: 198 QEFELNQDSDASIEY 212
           QEFEL +D +  IEY
Sbjct: 126 QEFELTRDINGQIEY 140

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
UNIPROTKB|Q29L80	211	GA19395 "PITH domain-containin	0.618	0.630	0.595	7.5e-41
FB|FBgn0032445	211	CG6153 [Drosophila melanogaste	0.613	0.625	0.583	1.6e-40
ZFIN|ZDB-GENE-040426-2366	210	pithd1 "PITH (C-terminal prote	0.613	0.628	0.533	5.5e-38
MGI|MGI:1913443	211	Pithd1 "PITH (C-terminal prote	0.613	0.625	0.496	2.4e-35
DICTYBASE|DDB_G0277951	202	DDB_G0277951 "UPF0424 family p	0.595	0.633	0.430	7.6e-25
TAIR|locus:2057432	204	AT2G25950 "AT2G25950" [Arabido	0.572	0.602	0.412	2.3e-23
ASPGD|ASPL0000055891	227	AN1364 [Emericella nidulans (t	0.586	0.555	0.365	1.8e-16
POMBASE|SPBP35G2.02	207	SPBP35G2.02 "proteasome intera	0.613	0.637	0.352	2.3e-16
UNIPROTKB|J9P740	243	TXNL1 "Uncharacterized protein	0.497	0.440	0.347	1.2e-09
RGD|621717	289	Txnl1 "thioredoxin-like 1" [Ra	0.497	0.370	0.347	1.9e-09

UNIPROTKB|Q29L80 GA19395 "PITH domain-containing protein GA19395" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 81/136 (59%), Positives = 98/136 (72%)

Query:    78 AHNHGGHCCGEEDHSHDDT-ELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLN 136
             +H+HGG  CG E    D   E+GI+YSLY  ID EN+ECLNE  +GSGKT+FKP+E R +
Sbjct:     6 SHDHGG--CGHEATDVDHALEMGIEYSLYTKIDAENLECLNEETEGSGKTVFKPYESRQD 63

Query:   137 KEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASP 196
               KFV+SD D ELL NIPFT NIKLKG+ + G + DSHPN++K+FKNRP MTFDD     
Sbjct:    64 MSKFVQSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAKVKV 123

Query:   197 DQEFELNQDSDASIEY 212
             DQEFEL +D    IEY
Sbjct:   124 DQEFELTRDPRGEIEY 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0032445 CG6153 [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 80/137 (58%), Positives = 100/137 (72%)

Query:    78 AHNHGG--HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
             +H+HGG  H   + DH+    E+GI+YSLY  ID +NVECLNE  DG GK++FKP+E R 
Sbjct:     6 SHDHGGCSHEASDVDHA---LEMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQ 62

Query:   136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
             +  K+VESD D ELL NIPFT NIKLKG+ + G + DSHPN +K+FKNRP MTFDD  A 
Sbjct:    63 DLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAK 122

Query:   196 PDQEFELNQDSDASIEY 212
             PDQEF+L +D+   IEY
Sbjct:   123 PDQEFQLTRDARGEIEY 139

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=IMP

ZFIN|ZDB-GENE-040426-2366 pithd1 "PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 72/135 (53%), Positives = 94/135 (69%)

Query:    79 HNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE 138
             H HG  CC  E   H+  E G++Y LY+ ID E ++CLNE+ DG GK +FKPW+ R ++ 
Sbjct:     8 HGHGHGCCECE---HEPAERGVEYELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRN 64

Query:   139 KFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQ 198
             KFVESD D ELL NIPFT ++KLKG+ + G D +SHP  I+LFKN P M+FDD +  P+Q
Sbjct:    65 KFVESDADEELLFNIPFTGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTSREPEQ 124

Query:   199 EFELNQDSDASIEYP 213
              F LN+D  A +EYP
Sbjct:   125 AFRLNRDPRAELEYP 139

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1913443 Pithd1 "PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/137 (49%), Positives = 94/137 (68%)

Query:    79 HNHGG---HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
             H+HGG    C  E +   +  + G+ Y LY  ID E ++CLNE+ +GSG+ +FKPWE+R 
Sbjct:     5 HSHGGGGCRCAAEREEPPE--QRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERT 62

Query:   136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
             ++ KFVESD D ELL NIPFT N+KLKG+ ++G D DSHP+ ++L+KN P M+FDD    
Sbjct:    63 DRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTERE 122

Query:   196 PDQEFELNQDSDASIEY 212
             P+Q F LN+D    +EY
Sbjct:   123 PEQTFSLNRDITGELEY 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0277951 DDB_G0277951 "UPF0424 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 56/130 (43%), Positives = 84/130 (64%)

Query:    84 HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVES 143
             H C +  HSH   + GI+YSL +++DT  + CLNE V GS + IFK WEDR + + FVES
Sbjct:     3 HQCNDSSHSHGVDD-GIEYSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDRHDLKHFVES 61

Query:   144 DVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNA-SPDQEFEL 202
               D EL+INIPF +  ++K + +IGGD  S PN++K + N   + F ++N+ +  QE+ L
Sbjct:    62 CDDEELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWNL 121

Query:   203 NQDSDASIEY 212
             ++D +  I Y
Sbjct:   122 HEDFEGQIGY 131

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2057432 AT2G25950 "AT2G25950" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/126 (41%), Positives = 82/126 (65%)

Query:    90 DHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE-KFVESDV-DS 147
             DH+ +D E    +SLYKHID   V  LNE+V GS K++FK WE RL+   + +ES+  D 
Sbjct:     6 DHNCEDHECSSDWSLYKHIDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLESNEGDP 65

Query:   148 ELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD-QEFELNQDS 206
             ELL+ +PFTS++K+K + ++GG   + P+++++F NR G+ F D  +    QE+EL ++ 
Sbjct:    66 ELLVFVPFTSDVKIKSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWELAENL 125

Query:   207 DASIEY 212
                +EY
Sbjct:   126 QGVLEY 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000055891 AN1364 [Emericella nidulans (taxid:162425)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 49/134 (36%), Positives = 70/134 (52%)

Query:    78 AHNHG-GHCCGE----EDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKP-W 131
             +HN+G GHC G+     DHS+D T   +Q  LY  I  +++  LNE    SG  I K  W
Sbjct:     7 SHNNGHGHCHGDGGDGHDHSNDITP-ALQSLLYSQIRFDSITTLNEATPQSGAAIVKKTW 65

Query:   132 EDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDD 191
              +R N    +ESD D +LL+ IPFT  + +  + +    + S P  +KLFKNR  + F  
Sbjct:    66 AERQNDTPELESDADEQLLMYIPFTGQVNVHSILIYTAPTPSAPRTLKLFKNRDDLDFST 125

Query:   192 VNA-SPDQEFELNQ 204
              +   P Q  E+ Q
Sbjct:   126 ASELKPTQTIEVPQ 139

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBP35G2.02 SPBP35G2.02 "proteasome interacting protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 48/136 (35%), Positives = 68/136 (50%)

Query:    82 GGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFV 141
             G H C  +   H   E G   +LY  I  E++  LNE V  SGK +FKPW+ R +    V
Sbjct:     3 GPHHCSADCDEHP-FESGPNDTLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIV 61

Query:   142 ESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFD---DVNASPDQ 198
             ESD D +LL  +PF     LK + +    +++ P+   LF NR  + FD   DV A+   
Sbjct:    62 ESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETF 121

Query:   199 EFELNQDSDASIEYPI 214
             EF L  +     E+P+
Sbjct:   122 EFPLTFEGSHIFEFPV 137

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010498 "proteasomal protein catabolic process" evidence=ISM

UNIPROTKB|J9P740 TXNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 41/118 (34%), Positives = 63/118 (53%)

Query:    92 SHDDTELGIQY-SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEK-FVESDVDSEL 149
             S++DT++   Y  L   I+    ECLNE+ D  G      +++ L K+  F+ESD D +L
Sbjct:    88 SNEDTDIPKGYMDLMPFINKAGCECLNES-DEHG------FDNCLRKDMTFLESDCDEQL 140

Query:   150 LINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
             LI + F   +KL  ++  G D+   P  +K+F N P  M F++   S P Q  EL +D
Sbjct:   141 LITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 198

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

RGD|621717 Txnl1 "thioredoxin-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 41/118 (34%), Positives = 63/118 (53%)

Query:    92 SHDDTELGIQY-SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE-KFVESDVDSEL 149
             S++DT++   Y  L   I+    ECLNE+ D  G      +++ L K+  F+ESD D +L
Sbjct:   113 SNEDTDIPKGYMDLMPFINKAGCECLNES-DEHG------FDNCLRKDLSFLESDCDEQL 165

Query:   150 LINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
             LI + F   +KL  ++  G D+   P  +K+F N P  M F++   S P Q  EL +D
Sbjct:   166 LITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 223

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29L80	PITH1_DROPS	No assigned EC number	0.5899	0.6046	0.6161	yes	N/A
Q9P7A1	PITH1_SCHPO	No assigned EC number	0.3529	0.6139	0.6376	yes	N/A
Q95ZI6	PITH1_CAEEL	No assigned EC number	0.4388	0.6232	0.6442	yes	N/A
Q9GZP4	PITH1_HUMAN	No assigned EC number	0.5038	0.5906	0.6018	yes	N/A
Q6NYX8	PITH1_DANRE	No assigned EC number	0.5508	0.5488	0.5619	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	215
pfam06201	151	pfam06201, PITH, PITH domain	2e-47
pfam06201	151	pfam06201, PITH, PITH domain	4e-07

>gnl|CDD|218936 pfam06201, PITH, PITH domain

 Score =  152 bits (387), Expect = 2e-47
 Identities = 58/114 (50%), Positives = 77/114 (67%), Gaps = 3/114 (2%)

Query: 103 SLYKHIDTENVECLNETVDGSG-KTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKL 161
           SLY  ID + VECLNE+ +GSG K++FKPW++RL+ E ++ESD D +LLINIPFT  +KL
Sbjct: 1   SLYSQIDLDKVECLNESDEGSGAKSLFKPWDERLDPEPYLESDADEQLLINIPFTQPVKL 60

Query: 162 KGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN-ASPDQEFELNQDSD-ASIEYP 213
             + + G D DS P  IKLF N P + FDD    +P Q  EL++  D   +EYP
Sbjct: 61  HSILIRGLDDDSAPKTIKLFINPPNLDFDDAEDLTPTQTLELSESDDEGGVEYP 114

This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a probable component of the 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain. Length = 151

>gnl|CDD|218936 pfam06201, PITH, PITH domain

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 10  RAAKFSNVYHLTCYFPTNFG-SDNTCLYYLGFRGES 44
           +  KF NV  LT +F  NFG  + T + Y+G RGE 
Sbjct: 116 KYVKFQNVNSLTIFFEDNFGEDETTRIDYIGLRGEP 151

This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a probable component of the 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG1730|consensus	206		100.0
PF06201	152	PITH: PITH domain; InterPro: IPR010400 The full-le	100.0
KOG0908|consensus	288		99.9
KOG1730|consensus	206		99.86
KOG0908|consensus	288		98.46
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	82.8
cd08666	134	APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H	81.81
cd08159	129	APC10-like APC10-like DOC1 domains in E3 ubiquitin	80.2

>KOG1730|consensus

Probab=100.00  E-value=2.9e-45  Score=306.65  Aligned_cols=137  Identities=53%  Similarity=0.972  Sum_probs=129.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecC
Q psy16329         77 MAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFT  156 (215)
Q Consensus        77 ~~h~H~~~c~~~~~~~~~~~~~g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt  156 (215)
                      |+|+|+|+|..+  ++++|-+.|..++||++||+.+|+||||+.+++++.|||||+.|.|.+.+||||+|+|||++||||
T Consensus         1 mshghsH~c~a~--~~e~p~e~g~~ysLys~Idle~v~~LNEsv~gsgK~VFKpwe~R~d~se~vESDaD~eLLfniPFt   78 (206)
T KOG1730|consen    1 MSHGHSHNCAAE--REEHPEERGLAYSLYSRIDLEKVQTLNESVDGSGKSVFKPWEKRTDRSEYVESDADEELLFNIPFT   78 (206)
T ss_pred             CCCCCCCCcchh--cccCchhcCccccceeEecHhHheecccccCCccccccchhhhhcchhhhhhccCCceeEEecccc
Confidence            788888887444  345577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEEecCCCCCCCcEEEEeeCCCCCCcccCCCCCCeEEEEeCCCCceeeecCC
Q psy16329        157 SNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM  215 (215)
Q Consensus       157 ~~VKl~SI~I~~~~~~~~Pk~iKlf~N~~~ldFd~ae~~p~Q~leL~~d~~g~~eypl~  215 (215)
                      +.|||++|+|+|.+++++|.+||||+||+.||||||+.+|+|++.|+.+..|++|||++
T Consensus        79 g~vkLkgI~I~g~~d~shP~~~rlFkNR~~m~FdD~~~~~dqef~lt~d~~g~iey~~K  137 (206)
T KOG1730|consen   79 GNVKLKGISIMGEPDGSHPSKMRLFKNREQMDFDDAEAEPDQEFSLTRDLTGEIEYPTK  137 (206)
T ss_pred             CceeEEEEEEEeCCCCCCchheEeecCCccCCcchhhcCcceecceecccCceEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999986

>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome

Probab=100.00  E-value=1.9e-38  Score=260.85  Aligned_cols=112  Identities=52%  Similarity=0.941  Sum_probs=84.7

Q ss_pred             ccccccccccceEEcCCCCCCcc-cccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecC-CCCCCCcEEEE
Q psy16329        103 SLYKHIDTENVECLNETVDGSGK-TIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG-DSDSHPNRIKL  180 (215)
Q Consensus       103 sL~~~ID~~~v~cLNe~~~~s~~-~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~-~~~~~Pk~iKl  180 (215)
                      ||+++||+++++|||++..++++ .+||+|++|++. .+|+||+|+||||+|||+++||||||+|+++ +++++|++|||
T Consensus         1 sL~~~Id~~~~~cLN~~~~~~~~~~l~k~~~~r~d~-~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKl   79 (152)
T PF06201_consen    1 SLYSYIDLDKVECLNEDDPHSARNNLFKPWDDRLDP-PFLESDADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKL   79 (152)
T ss_dssp             ESCCCB-TTT-EECSS-TTS-SCCCCSTTS--TTS----EE-SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEEEE
T ss_pred             ChHHhCcccccEEEeCCCCCCccceeEcccccccCc-cccccCCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEEEE
Confidence            69999999999999999999999 889999999998 9999999999999999999999999999999 89999999999


Q ss_pred             eeC-CCCCCcccCCC-CCCeEEEEeC-CCCceeeecCC
Q psy16329        181 FKN-RPGMTFDDVNA-SPDQEFELNQ-DSDASIEYPIM  215 (215)
Q Consensus       181 f~N-~~~ldFd~ae~-~p~Q~leL~~-d~~g~~eypl~  215 (215)
                      |+| +++|||++|++ +|+|+++|++ +..|.+||||+
T Consensus        80 f~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk  117 (152)
T PF06201_consen   80 FINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLK  117 (152)
T ss_dssp             EES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--
T ss_pred             EECCCCCcCccccccCCCCceEEcCccccCCceEeeee
Confidence            999 88899999998 5999999998 78889999986

PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.

>KOG0908|consensus

Probab=99.90  E-value=2.9e-24  Score=188.81  Aligned_cols=105  Identities=33%  Similarity=0.544  Sum_probs=96.5

Q ss_pred             CCcccccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCC
Q psy16329         96 TELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHP  175 (215)
Q Consensus        96 ~~~g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~P  175 (215)
                      .+.| +++|..+||..+++|||+++.+..++.+|.     +.+.+++||+||||||.|||+++||+|||.|++++.+.+|
T Consensus       118 ~~Kg-q~dL~~~I~~~gleclNqsddH~l~nalkk-----~~ss~lesD~DeQl~isi~fnq~vk~hS~a~k~p~~~~~P  191 (288)
T KOG0908|consen  118 IVKG-QMDLKPFIDKVGLECLNQSDDHFLKNALKK-----NFSSNLESDCDEQLIISIPFNQAVKVHSIAIKGPANPLGP  191 (288)
T ss_pred             cccc-eehhhhhhhhhcceeeccccccchHHHHhh-----ccccceecccccceEEEeeccCccceeeeecCCCCCCCCC
Confidence            5666 889999999999999999999999999975     3457899999999999999999999999999999888999


Q ss_pred             cEEEEeeCCCC-CCcccCCC-CCCeEEEEeCCC
Q psy16329        176 NRIKLFKNRPG-MTFDDVNA-SPDQEFELNQDS  206 (215)
Q Consensus       176 k~iKlf~N~~~-ldFd~ae~-~p~Q~leL~~d~  206 (215)
                      |+||||+|+|. |||+++++ +|+|.++|.+..
T Consensus       192 k~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~  224 (288)
T KOG0908|consen  192 KTVKIFINQPRTMDFENAESFEPTQLLELTELD  224 (288)
T ss_pred             eeEEEEecCccccCcccccccCcccccchhhhh
Confidence            99999999886 99999998 599999988764

>KOG1730|consensus

Probab=99.86  E-value=2.5e-22  Score=168.78  Aligned_cols=66  Identities=48%  Similarity=0.862  Sum_probs=62.2

Q ss_pred             EeecccccccccEEEEEEcCCCCCCceEEEEEEEEeeeCCCCccceeeeeeecCCCcccccccCCC
Q psy16329          7 LVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMN   72 (215)
Q Consensus         7 ~~l~~~kF~nv~~Ltlf~~~n~g~d~t~I~yigl~Ge~~~~~r~~v~~~vYE~~pnp~DH~~~~~~   72 (215)
                      -++|.+|||||++|+|||+.|||+|+|+|+||||||||++..|+.+++|+||++|||+||++...+
T Consensus       134 y~~K~s~f~nv~nLsi~f~~nfG~D~TqI~YIGlRGeft~~~~h~~~i~~yea~a~~~dh~~~~~~  199 (206)
T KOG1730|consen  134 YPTKISKFQNVHNLSIHFPKNFGEDTTQIYYIGLRGEFTELFRHEVAICNYEARANPADHKVHQVD  199 (206)
T ss_pred             eccceeeeccceeEEEEeccccCCCcceEEEEEecceeeehhcCCceEEEEeccCChhhCcccccc
Confidence            478999999999999999999999999999999999999999999889999999999999977653

>KOG0908|consensus

Probab=98.46  E-value=1.2e-07  Score=84.27  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=38.7

Q ss_pred             EEeecccccccccEEEEEEcCCCCC-CceEEEEEEEEeeeCCC
Q psy16329          6 FLVFRAAKFSNVYHLTCYFPTNFGS-DNTCLYYLGFRGESSPL   47 (215)
Q Consensus         6 ~~~l~~~kF~nv~~Ltlf~~~n~g~-d~t~I~yigl~Ge~~~~   47 (215)
                      -|+||++|||||++|++|++.|+|+ |.|||.|||+.|+..+.
T Consensus       229 ~V~lryvkfqnV~sv~iFiq~n~gg~evtri~~~~~~GsPv~~  271 (288)
T KOG0908|consen  229 PVPLRYVKFQNVNSVQIFIQSNQGGEEVTRISKLGLFGSPVPT  271 (288)
T ss_pred             eEEeeeeeEEEeeEEEEEEecCCCCcccceeeeeeeccccCCC
Confidence            5899999999999999999999985 79999999999987664

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=82.80  E-value=4.9  Score=31.63  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             CcceEEEeecCCceeeEEEEEecCC-----CCCCCcEEEEeeCCCCC--------Ccc-cCCCCCCeEEEEeCCC
Q psy16329        146 DSELLINIPFTSNIKLKGLRLIGGD-----SDSHPNRIKLFKNRPGM--------TFD-DVNASPDQEFELNQDS  206 (215)
Q Consensus       146 DeQLii~IPFt~~VKl~SI~I~~~~-----~~~~Pk~iKlf~N~~~l--------dFd-~ae~~p~Q~leL~~d~  206 (215)
                      ...--+-|-|.+++.+.+|.|.-.+     -.++||.++||.-....        .|. +.+..+.|++.|....
T Consensus        29 g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~  103 (135)
T PF07738_consen   29 GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPP  103 (135)
T ss_dssp             TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--
T ss_pred             CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCc
Confidence            4434456667899999999997532     46899999999754332        444 3344588999997664

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination

Probab=81.81  E-value=7.3  Score=31.85  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=41.2

Q ss_pred             CCCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCC
Q psy16329        136 NKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNR  184 (215)
Q Consensus       136 d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~  184 (215)
                      +.+.|=+||.-. +=.|+|-|..-|.|+.|.|.-.  ++...|++|.|++=.
T Consensus        28 ~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~   79 (134)
T cd08666          28 DPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE   79 (134)
T ss_pred             CCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC
Confidence            456789999766 6899999999999999999763  566889999999866

This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i

>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=80.20  E-value=6.4  Score=31.88  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             CCCCceecCCC-cceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCCC
Q psy16329        136 NKEKFVESDVD-SELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNRP  185 (215)
Q Consensus       136 d~~~~leSD~D-eQLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~~  185 (215)
                      +.+.|=+||.- ++..|.+-|...|.|+.|.|.-.  ++...|++|+|++=..
T Consensus        23 ~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~   75 (129)
T cd08159          23 NYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHS   75 (129)
T ss_pred             CCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCC
Confidence            35678889853 35789999999999999999764  5668899999998543

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
1wwy_A	171	Solution Structure Of The Duf1000 Domain Of A Thior		3e-07
1xoy_A	161	Solution Structure Of At3g04780.1, An Arabidopsis O		7e-07

>pdb|1WWY|A Chain A, Solution Structure Of The Duf1000 Domain Of A Thioredoxin-Li 1 Length = 171

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 104 LYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEK-FVESDVDSELLINIPFTSNIKLK 162
           L   I+    ECLNE+ D  G      +++ L K+  F+ESD D +LLI + F   +KL 
Sbjct: 12  LMPFINKAGCECLNES-DEHG------FDNCLRKDTTFLESDCDEQLLITVAFNQPVKLY 64
Query: 163 GLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
            ++  G D+   P  +K+F N P  M F++   S P Q  EL +D
Sbjct: 65  SMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 109

>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog Of The C-Terminal Domain Of Human Thioredoxin-Like Protein Length = 161

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPW---EDRLNKEKFVESDVDSELLINIPFTS 157
           Q  L   ID   VECLN++   S     K     ++ LN    +ESD D +LLI IPF  
Sbjct: 13  QVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLN----LESDADEQLLIYIPFNQ 68
Query: 158 NIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASP 196
            IKL     I G  +  P  +K F N+  M F +VN  P
Sbjct: 69  VIKLHSFA-IKGPEEEGPKTVKFFSNKEHMCFSNVNDFP 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	1e-38
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	8e-08
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	1e-33
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	1e-05

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Length = 161

 Score =  130 bits (328), Expect = 1e-38
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIK 160
           Q  L   ID   VECLN++   S     K    R ++   +ESD D +LLI IPF   IK
Sbjct: 13  QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIK 71

Query: 161 LKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNA-SPDQEFELNQDSDASIEYP 213
           L     I G  +  P  +K F N+  M F +VN   P    EL +++       
Sbjct: 72  LHSF-AIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVV 124

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Length = 161

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 9   FRAAKFSNVYHLTCYFPTN-FGSDNTCLYYLGFRGES 44
            +  KF NV  LT +   N  GS+ T +  +   G +
Sbjct: 125 LKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens} Length = 171

 Score =  117 bits (295), Expect = 1e-33
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 95  DTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIP 154
               G    L   I+    ECLNE+ +       +          F+ESD D +LLI + 
Sbjct: 3   SGSSGGYMDLMPFINKAGCECLNESDEHGFDNCLRK------DTTFLESDCDEQLLITVA 56

Query: 155 FTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQ-DSDASIE 211
           F   +KL  ++  G D+   P  +K+F N P  M F++   S P Q  EL + D      
Sbjct: 57  FNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGI 116

Query: 212 YP 213
            P
Sbjct: 117 VP 118

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens} Length = 171

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 9   FRAAKFSNVYHLTCYFPTNFG-SDNTCLYYLGFRGESS 45
            R  KF NV  +T +  +N G  + T + Y  F G   
Sbjct: 119 LRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPV 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	100.0
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	100.0
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	99.39

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26

Probab=100.00  E-value=8.3e-40  Score=270.28  Aligned_cols=112  Identities=33%  Similarity=0.501  Sum_probs=106.0

Q ss_pred             ccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCcEEEE
Q psy16329        101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKL  180 (215)
Q Consensus       101 ~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iKl  180 (215)
                      +++|+++||+++|+|||++++++++++||||+ |.+.+.|++||+||||||+|||+++||||||+|+++++ ++||+|||
T Consensus        13 ~~~L~~~Id~~~v~cLNe~~~~~~~~v~k~~~-r~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~-~~Pk~iKl   90 (161)
T 1xoy_A           13 QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEE-EGPKTVKF   90 (161)
T ss_dssp             CEESSTTBCCSSCEESCSCTTSCSHHHHSTTS-CCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCTT-TSEEEEEE
T ss_pred             hhhhhhhCcccccEEecCCCCCChhheechhh-hccCCccCcCCCCceEEEEeecCCcEEEEEEEEECCCC-CCCcEEEE
Confidence            78999999999999999999999999999998 66677899999999999999999999999999999888 99999999


Q ss_pred             eeCCCCCCcccCCC-CCCeEEEEeCCC-CceeeecCC
Q psy16329        181 FKNRPGMTFDDVNA-SPDQEFELNQDS-DASIEYPIM  215 (215)
Q Consensus       181 f~N~~~ldFd~ae~-~p~Q~leL~~d~-~g~~eypl~  215 (215)
                      |+||++||||+|++ +|+|+|+|++++ .| .|||||
T Consensus        91 f~N~~~ldFd~a~~~~p~Q~~el~~~~~~g-~~~~lr  126 (161)
T 1xoy_A           91 FSNKEHMCFSNVNDFPPSDTAELTEENLKG-KPVVLK  126 (161)
T ss_dssp             EESCSCCCHHHHTTSCCSEEECCCTTGGGT-CCEECC
T ss_pred             eeCCCCCChhhhccCCCceEEECCCCcCCC-cEEecc
Confidence            99999999999998 599999999996 67 899986

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=247.13  Aligned_cols=109  Identities=29%  Similarity=0.525  Sum_probs=97.9

Q ss_pred             cccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCcEEE
Q psy16329        100 IQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIK  179 (215)
Q Consensus       100 ~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iK  179 (215)
                      .+++||++||+++|+|||+++.++++++++.      ...||+||+||||||+|||+++||||||+|++++++++||+||
T Consensus         8 ~~~~L~~~ID~~~v~cLNe~~~~~~~~~l~~------~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~~Pk~iK   81 (171)
T 1wwy_A            8 GYMDLMPFINKAGCECLNESDEHGFDNCLRK------DTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVK   81 (171)
T ss_dssp             CCBCCGGGEEEEEEEEESCCSSSCSSTTSSS------SSCCBCCSSCSCCEEEEEEEEEEEEEEEEECCCSSSCCBCEEE
T ss_pred             chhhhhhhCcccccEEecCCCCCCHHHhhcc------CCCcCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCCcEEE
Confidence            3689999999999999999988876666641      4579999999999999999999999999999999999999999


Q ss_pred             EeeCC-CCCCcccCCC-CCCeEEEEeCCC--CceeeecCC
Q psy16329        180 LFKNR-PGMTFDDVNA-SPDQEFELNQDS--DASIEYPIM  215 (215)
Q Consensus       180 lf~N~-~~ldFd~ae~-~p~Q~leL~~d~--~g~~eypl~  215 (215)
                      ||+|| ++||||+|++ +|+|+|+|++++  .| .|||||
T Consensus        82 lf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g-~~~~Lr  120 (171)
T 1wwy_A           82 IFINLPRSMDFEEAERSEPTQALELTEDDIKED-GIVPLR  120 (171)
T ss_dssp             EEESCSSCCCTTHHHHSCCSSCEECCTTTSSTT-CCEECC
T ss_pred             EeecCCCCcChhhhccCCCceEEEcCCcccCCC-cEEEcc
Confidence            99999 6899999997 599999999986  35 699986

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-13  Score=114.69  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=39.8

Q ss_pred             EeecccccccccEEEEEEcCCCC-CCceEEEEEEEEeeeCCCCccc
Q psy16329          7 LVFRAAKFSNVYHLTCYFPTNFG-SDNTCLYYLGFRGESSPLHRHG   51 (215)
Q Consensus         7 ~~l~~~kF~nv~~Ltlf~~~n~g-~d~t~I~yigl~Ge~~~~~r~~   51 (215)
                      ++||++|||||+||||||++||| +|.|||+||||||++++. +++
T Consensus       117 ~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~~~~-~~m  161 (171)
T 1wwy_A          117 VPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQA-TNM  161 (171)
T ss_dssp             EECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEESSC-CSC
T ss_pred             EEccceEEcccCEEEEEEecCCCCCccEEEEEEEEEeEecCc-ccH
Confidence            79999999999999999999995 589999999999999875 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1xoya_	161	b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O1	2e-40
d1xoya_	161	b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O1	3e-07

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 161

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  133 bits (336), Expect = 2e-40
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIK 160
           Q  L   ID   VECLN++   S     K    R ++   +ESD D +LLI IPF   IK
Sbjct: 13  QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIK 71

Query: 161 LKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN-ASPDQEFELNQDSDASIEYP 213
           L     I G  +  P  +K F N+  M F +VN   P    EL +++       
Sbjct: 72  LHSF-AIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVV 124

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 161

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 8   VFRAAKFSNVYHLTCYFPTN-FGSDNTCLYYLGFRGES 44
           V +  KF NV  LT +   N  GS+ T +  +   G +
Sbjct: 124 VLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1xoya_	161	Hypothetical protein AT3g04780/F7O18_27 {Thale cre	100.0

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.1e-39  Score=263.17  Aligned_cols=116  Identities=33%  Similarity=0.488  Sum_probs=108.7

Q ss_pred             CcccccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCc
Q psy16329         97 ELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPN  176 (215)
Q Consensus        97 ~~g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk  176 (215)
                      +.| +++|+++||+++|+|||+...++++++||+|+ |.+...+|+||+|+||||+|||+++||||||+|++++ +++||
T Consensus        10 p~g-~~dL~~~ID~~~v~cLNe~~~~~~~~vlk~~~-r~~~~~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~-~~~Pk   86 (161)
T d1xoya_          10 PKG-QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPE-EEGPK   86 (161)
T ss_dssp             CSS-CEESSTTBCCSSCEESCSCTTSCSHHHHSTTS-CCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCT-TTSEE
T ss_pred             CCc-hhhhHhhCccccceEecCCCCCCccccccccc-ccCCCceEecCCChheEEEeecCCceEEEEEEEeCCC-CCCCc
Confidence            445 78999999999999999999999999999996 8888999999999999999999999999999999865 48999


Q ss_pred             EEEEeeCCCCCCcccCCC-CCCeEEEEeCCCCceeeecCC
Q psy16329        177 RIKLFKNRPGMTFDDVNA-SPDQEFELNQDSDASIEYPIM  215 (215)
Q Consensus       177 ~iKlf~N~~~ldFd~ae~-~p~Q~leL~~d~~g~~eypl~  215 (215)
                      +||||+|+++|||++|++ +|+|+|+|++++.|.++|||+
T Consensus        87 ~iklf~N~~~idF~~a~~~~p~q~iel~~~~~~~~~~~L~  126 (161)
T d1xoya_          87 TVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLK  126 (161)
T ss_dssp             EEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCEECC
T ss_pred             EEEEEeCCCcCCcchhhhCCccceEEeCCccCCceEEeec
Confidence            999999999999999998 599999999999888899986