Psyllid ID: psy16330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MFLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST
Secondary Structure (PSIPRED)
ccEEcccccccEEEEEEEEEEEEccccccccccccccEEEEEEccccEEEEEEEccccccccccEEEEEEccccEEEEEEEEccccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccEEEEEEEEEEEEEccccccccccccccEEEEEEccccccEEEEEEcccccccccEEEEEEccccEEEEEEEEccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MFLLQDYFSSVLQLLQLVECAhlrrggqgggllkpnpyielyvdyknpkttrvvkntyqpkwneeftvlvspYSIILFRLldhrtfrrdctigekrlntst
Flexible Loop (DISEMBL)
MFLLQDYFSSVLQLLQLVECAHLrrggqgggllkpnpYIELYvdyknpkttrVVKNtyqpkwneeftvlvspySIILFrlldhrtfrrdctigekrlntst
Low Complexity Region (SEG)
MFLLQDYFSSVLQLLQLVECAHlrrggqgggllKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST
Disordered region (IsUnstruct)
*FLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG********
Disordered Region (DISOPRED)
*************LLQLVECAHLRRGG**GGLLKPNPYIELYVDYKNPKT*****NTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTS*
Disordered Region (DISEMBL)
MFLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST
Disordered Region (DISPRO)
MFLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9Y0H4	949	E3 ubiquitin-protein liga	yes	N/A	0.811	0.086	0.511	3e-19
Q96J02	903	E3 ubiquitin-protein liga	yes	N/A	0.623	0.069	0.390	1e-07
Q8C863	864	E3 ubiquitin-protein liga	yes	N/A	0.623	0.072	0.390	2e-07
O14326	786	E3 ubiquitin-protein liga	yes	N/A	0.465	0.059	0.446	5e-05
Q9H0M0	922	NEDD4-like E3 ubiquitin-p	no	N/A	0.851	0.093	0.322	6e-05
Q8BZZ3	918	NEDD4-like E3 ubiquitin-p	no	N/A	0.881	0.096	0.311	0.0002
P50392	741	Cytosolic phospholipase A	no	N/A	0.851	0.116	0.325	0.0004

>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 13  QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           QL   +E A LR      G LKPNPY+EL +D K+ + T +VKN+Y PKWNEEFTVL++P
Sbjct: 50  QLSVTIEEASLR----NNGFLKPNPYVELLIDSKSKRKTDLVKNSYLPKWNEEFTVLITP 105

Query: 73  YSIILFRLLDHRTFRRDCTIGEKRLN 98
            S + F++LDH +FR+D  +GE+ +N
Sbjct: 106 NSTLHFKVLDHSSFRKDAMLGERIIN 131

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Down-regulates Notch/N signaling pathway, probably by promoting Notch ubiquitination, endocytosis and degradation. Involved in wing growth and leg joint formation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q96J02|ITCH_HUMAN E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 35  PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
           P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct: 39  PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 97

Query: 95  KRLN 98
             L+
Sbjct: 98  AALD 101

Acts as an E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It catalyzes 'Lys-29'-, 'Lys-48'- and 'Lys-63'-linked ubiquitin conjugation. It is involved in the control of inflammatory signaling pathways. Is an essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, TAX1BP1 and RNF11, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of the complex after TNF stimulation. Once the complex is formed, TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NFKB1. Ubiquitinates RIPK2 by 'Lys-63'-linked conjugation and influences NOD2-dependent signal transduction pathways. Regulates the transcriptional activity of several transcription factors, and probably plays an important role in the regulation of immune response. Ubiquitinates NFE2 by 'Lys-63' linkages and is implicated in the control of the development of hematopoietic lineages. Critical regulator of T-helper (TH2) cytokine development through its ability to induce JUNB ubiquitination and degradation (By similarity). Ubiquitinates SNX9. Ubiquitinates CXCR4 and HGS/HRS and regulates sorting of CXCR4 to the degradative pathway. It is involved in the negative regulation of MAVS-dependent cellular antiviral responses. Ubiquitinates MAVS through 'Lys-48'-linked conjugation resulting in MAVS proteasomal degradation. Involved in the regulation of apoptosis and reactive oxygen species levels through the ubiquitination and proteasomal degradation of TXNIP. Mediates the antiapoptotic activity of epidermal growth factor through the ubiquitination and proteasomal degradation of p15 BID. Targets DTX1 for lysosomal degradation and controls NOTCH1 degradation, in the absence of ligand, through 'Lys-29'-linked polyubiquitination.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 35  PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
           P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct: 39  PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPTSKLCFRVWSHQTLKSDVLLGT 97

Query: 95  KRLN 98
             L+
Sbjct: 98  AGLD 101

Acts as an E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It catalyzes 'Lys-29'-, 'Lys-48'- and 'Lys-63'-linked ubiquitin conjugation. It is involved in the control of inflammatory signaling pathways. Is an essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, TAX1BP1 and RNF11, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of the complex after TNF stimulation. Once the complex is formed, TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NFKB1 (By similarity). Ubiquitinates RIPK2 by 'Lys-63'-linked conjugation and influences NOD2-dependent signal transduction pathways (By similarity). Regulates the transcriptional activity of several transcription factors involved in immune response. Critical regulator of T-helper (TH2) cytokine development through its ability to induce JUNB ubiquitination and degradation. Ubiquitinates SNX9 (By similarity). Ubiquitinates CXCR4 and HGS/HRS and regulates sorting of CXCR4 to the degradative pathway (By similarity). It is involved in the negative regulation of MAVS-dependent cellular antiviral responses. Ubiquitinates MAVS through 'Lys-48'-linked conjugation resulting in MAVS proteasomal degradation (By similarity). Involved in the regulation of apoptosis and reactive oxygen species levels through the ubiquitination and proteasomal degradation of TXNIP (By similarity). Mediates the antiapoptotic activity of epidermal growth factor through the ubiquitination and proteasomal degradation of p15 BID. Targets DTX1 for lysosomal degradation and controls NOTCH1 degradation, in the absence of ligand, through 'Lys-29'-linked polyubiquitination.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O14326|PUB3_SCHPO E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub3 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRL 80
          +P+P+  L VD +   TT+V+K +  P WNE F V V P S+I  RL
Sbjct: 26 QPDPFAILTVDGEQTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRL 72

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9H0M0|WWP1_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 9   SSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTV 68
           S  LQL   V  A L+R     G      Y E+ VD +  KT +    +  PKW+E+ TV
Sbjct: 15  SGRLQLQVTVSSAKLKRKKNWFGTAI---YTEVVVDGEITKTAKSSS-SSNPKWDEQLTV 70

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGEKRLN 98
            V+P + + F++  HRT + D  +G+  ++
Sbjct: 71  NVTPQTTLEFQVWSHRTLKADALLGKATID 100

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates ERBB4 isoforms JM-A CYT-1 and JM-B CYT-1, KLF2, KLF5 and TP63 and promotes their proteasomal degradation. Ubiquitinates RNF11 without targeting it for degradation. Ubiquitinates and promotes degradation of TGFBR1; the ubiquitination is enhanced by SMAD7. Ubiquitinates SMAD6 and SMAD7.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 6   DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEE 65
           D  S  LQL   V  A L+R     G      Y E+ VD +  KT +    +  PKW+E+
Sbjct: 12  DIHSGRLQLKVTVSSAKLKRKKNWFGTAI---YTEVIVDGEVKKTAKSSS-SSNPKWDEQ 67

Query: 66  FTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLN 98
             V V+P + + FR+  H T + D  +G+  ++
Sbjct: 68  LIVNVTPQTTLEFRVWSHHTLKADALLGKATVD 100

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Ubiquitinates ERBB4 isoforms JM-A CYT-1 and JM-B CYT-1, KLF2, KLF5 and TP63 and promotes their proteasomal degradation. Ubiquitinates RNF11 without targeting it for degradation. Ubiquitinates and promotes degradation of TGFBR1; the ubiquitination is enhanced by SMAD7. Ubiquitinates SMAD6 and SMAD7.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P50392|PA24A_DANRE Cytosolic phospholipase A2 OS=Danio rerio GN=pla2g4a PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 15  LQLVECAHLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           L +V   ++ +G  G  L  P+PY+EL V    ++ K TR + N   PKWNE F  ++ P
Sbjct: 16  LTVVRAENVTKGAFGDLLDTPDPYVELSVPTTPESRKRTRHINNDINPKWNETFEFILDP 75

Query: 73  -YSIILFRLLDHRTFRRDCTIGEKRLNTS 100
             S +L   L    +  D T+G  + + S
Sbjct: 76  NQSNVLEVTLMDANYVMDETLGTAKYSLS 104

Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
322797930	145	hypothetical protein SINV_14433 [Solenop	0.772	0.537	0.634	3e-22
242011248	885	E3 ubiquitin-protein ligase suppressor o	0.782	0.089	0.641	6e-22
383851034	1077	PREDICTED: E3 ubiquitin-protein ligase S	0.871	0.081	0.586	2e-21
307187706	1243	E3 ubiquitin-protein ligase suppressor o	0.811	0.065	0.604	2e-21
307212263	1190	E3 ubiquitin-protein ligase suppressor o	0.811	0.068	0.604	3e-21
350425414	1089	PREDICTED: E3 ubiquitin-protein ligase S	0.871	0.080	0.576	8e-21
340730127	1096	PREDICTED: e3 ubiquitin-protein ligase S	0.871	0.080	0.576	9e-21
380017666	1083	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.871	0.081	0.565	2e-20
156547603	896	PREDICTED: E3 ubiquitin-protein ligase S	0.801	0.090	0.576	4e-19
195159419	883	GL15308 [Drosophila persimilis] gi|19411	0.811	0.092	0.511	9e-18

>gi|322797930|gb|EFZ19798.1| hypothetical protein SINV_14433 [Solenopsis invicta]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 4/82 (4%)

Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSII 76
          LVE A LR        LKPNPYIE  VD K+P+ T + K+TYQPKWNEEFT+LV+PYS +
Sbjct: 2  LVEAAILR----SSTFLKPNPYIEFSVDDKSPRKTEISKSTYQPKWNEEFTILVTPYSQL 57

Query: 77 LFRLLDHRTFRRDCTIGEKRLN 98
           FRLLDH TFR+D  IGEKR+N
Sbjct: 58 HFRLLDHSTFRKDTLIGEKRIN 79

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011248|ref|XP_002426367.1| E3 ubiquitin-protein ligase suppressor of deltex, putative [Pediculus humanus corporis] gi|212510444|gb|EEB13629.1| E3 ubiquitin-protein ligase suppressor of deltex, putative [Pediculus humanus corporis]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 2/81 (2%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIIL 77
           +ECAHLR G      LKPNPY+EL VD + PK T VVK TYQPKWNEEF+VLV+PYS + 
Sbjct: 31  IECAHLRSGSSFS--LKPNPYVELSVDNQYPKKTEVVKCTYQPKWNEEFSVLVTPYSYLH 88

Query: 78  FRLLDHRTFRRDCTIGEKRLN 98
           ++LLD  TFRRD  IGEK L+
Sbjct: 89  YKLLDQSTFRRDSVIGEKNLS 109

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851034|ref|XP_003701058.1| PREDICTED: E3 ubiquitin-protein ligase Su(dx)-like [Megachile rotundata]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 9   SSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTV 68
           S   QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+
Sbjct: 11  SGFHQLSITIEGAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTI 66

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGEKRLNTS 100
           LV+PYS + FRLLDH TFR+D  IGEK++N S
Sbjct: 67  LVTPYSQLHFRLLDHSTFRKDTLIGEKKINLS 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187706|gb|EFN72678.1| E3 ubiquitin-protein ligase suppressor of deltex [Camponotus floridanus]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 62/86 (72%), Gaps = 4/86 (4%)

Query: 13 QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
          QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+LV+P
Sbjct: 15 QLSITIEAAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTILVTP 70

Query: 73 YSIILFRLLDHRTFRRDCTIGEKRLN 98
          YS + FRLLDH TFR+D  IGEKR++
Sbjct: 71 YSQLHFRLLDHSTFRKDTLIGEKRIS 96

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212263|gb|EFN88071.1| E3 ubiquitin-protein ligase suppressor of deltex [Harpegnathos saltator]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 62/86 (72%), Gaps = 4/86 (4%)

Query: 13 QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
          QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+LV+P
Sbjct: 15 QLSITIEAAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTILVTP 70

Query: 73 YSIILFRLLDHRTFRRDCTIGEKRLN 98
          YS + FRLLDH TFR+D  IGEKR++
Sbjct: 71 YSQLHFRLLDHSTFRKDTLIGEKRIS 96

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425414|ref|XP_003494115.1| PREDICTED: E3 ubiquitin-protein ligase Su(dx)-like [Bombus impatiens]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 9   SSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTV 68
           S   QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+
Sbjct: 11  SGFHQLSITIEGAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTI 66

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGEKRLNTS 100
           LV+PYS + FRLLDH TFR+D  IGEK+++ S
Sbjct: 67  LVTPYSQLHFRLLDHSTFRKDTLIGEKKISLS 98

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340730127|ref|XP_003403338.1| PREDICTED: e3 ubiquitin-protein ligase Su(dx)-like [Bombus terrestris]

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 9   SSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTV 68
           S   QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+
Sbjct: 11  SGFHQLSITIEGAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTI 66

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGEKRLNTS 100
           LV+PYS + FRLLDH TFR+D  IGEK+++ S
Sbjct: 67  LVTPYSQLHFRLLDHSTFRKDTLIGEKKISLS 98

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017666|ref|XP_003692768.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Su(dx)-like [Apis florea]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 9   SSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTV 68
           S   QL   +E A LR        LKPNPYIE  VD K+P+ T V K+TYQPKWNEEFT+
Sbjct: 11  SGFHQLSITIEGAILR----SSTFLKPNPYIEFSVDDKSPRKTEVSKSTYQPKWNEEFTI 66

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGEKRLNTS 100
           LV+P+S + FRLLDH TFR+D  IGEK+++ S
Sbjct: 67  LVTPHSQLHFRLLDHSTFRKDTLIGEKKISLS 98

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547603|ref|XP_001603350.1| PREDICTED: E3 ubiquitin-protein ligase Su(dx)-like [Nasonia vitripennis]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 13 QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
          QL   +E A LR        LKPNPYIE  VD K+P+ T V K+T QPKWN++FTVLV+P
Sbjct: 15 QLSITIEAATLR----SSSFLKPNPYIEFSVDDKSPRRTEVSKSTLQPKWNDKFTVLVTP 70

Query: 73 YSIILFRLLDHRTFRRDCTIGEKRL 97
          YS + FRLLDH +FR+D  IGEKR+
Sbjct: 71 YSQLHFRLLDHSSFRKDTLIGEKRI 95

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159419|ref|XP_002020576.1| GL15308 [Drosophila persimilis] gi|194117526|gb|EDW39569.1| GL15308 [Drosophila persimilis]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 13  QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           QL   +E A LR      G LKPNPY+EL +D K+ + T  VKN+Y PKWNEEFTVL++P
Sbjct: 82  QLSVTIEEASLR----NNGFLKPNPYVELLIDSKSKRKTDQVKNSYLPKWNEEFTVLITP 137

Query: 73  YSIILFRLLDHRTFRRDCTIGEKRLN 98
           +S + F++LDH +FR+D  +GE+ +N
Sbjct: 138 HSTLHFKVLDHSSFRKDAMLGERIIN 163

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0003557	949	Su(dx) "Suppressor of deltex"	0.643	0.068	0.553	2.4e-16
UNIPROTKB|E1BVS1	878	ITCH "E3 ubiquitin-protein lig	0.623	0.071	0.390	5.9e-08
UNIPROTKB|D4AD30	711	Itch "Protein Itch" [Rattus no	0.623	0.088	0.390	9.4e-08
RGD|1359556	854	Itch "itchy E3 ubiquitin prote	0.623	0.073	0.390	1.2e-07
UNIPROTKB|G3V8C2	864	Itch "E3 ubiquitin-protein lig	0.623	0.072	0.390	1.2e-07
UNIPROTKB|J9NTN8	862	ITCH "E3 ubiquitin-protein lig	0.623	0.073	0.390	1.6e-07
MGI|MGI:1202301	864	Itch "itchy, E3 ubiquitin prot	0.623	0.072	0.390	1.6e-07
UNIPROTKB|E2QXM7	879	ITCH "E3 ubiquitin-protein lig	0.623	0.071	0.390	1.6e-07
UNIPROTKB|Q96J02	903	ITCH "E3 ubiquitin-protein lig	0.623	0.069	0.390	1.6e-07
UNIPROTKB|F1MGQ5	862	ITCH "E3 ubiquitin-protein lig	0.623	0.073	0.390	2e-07

FB|FBgn0003557 Su(dx) "Suppressor of deltex" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 36/65 (55%), Positives = 52/65 (80%)

Query:    34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG 93
             KPNPY+EL +D K+ + T +VKN+Y PKWNEEFTVL++P S + F++LDH +FR+D  +G
Sbjct:    67 KPNPYVELLIDSKSKRKTDLVKNSYLPKWNEEFTVLITPNSTLHFKVLDHSSFRKDAMLG 126

Query:    94 EKRLN 98
             E+ +N
Sbjct:   127 ERIIN 131

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA;NAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IGI

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IGI;IMP

GO:0007219 "Notch signaling pathway" evidence=IGI

GO:0016348 "imaginal disc-derived leg joint morphogenesis" evidence=IGI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0031623 "receptor internalization" evidence=IMP

GO:0005112 "Notch binding" evidence=IPI

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0019915 "lipid storage" evidence=IDA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

UNIPROTKB|E1BVS1 ITCH "E3 ubiquitin-protein ligase" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    38 PSPYVEVSVDGQSKKTEKC-NNTNSPKWKQHLTVIVTPLSKLTFRVWSHQTLKSDVLLGS 96

Query:    95 KRLN 98
               L+
Sbjct:    97 AALD 100

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

GO:0002218 "activation of innate immune response" evidence=TAS

UNIPROTKB|D4AD30 Itch "Protein Itch" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPMSKLCFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AGLD 101

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359556 Itch "itchy E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    29 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPMSKLCFRVWSHQTLKSDVLLGT 87

Query:    95 KRLN 98
               L+
Sbjct:    88 AGLD 91

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0002669 "positive regulation of T cell anergy" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0035519 "protein K29-linked ubiquitination" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043021 "ribonucleoprotein complex binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045236 "CXCR chemokine receptor binding" evidence=ISO

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

GO:0046329 "negative regulation of JNK cascade" evidence=ISO

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=ISO

GO:0050687 "negative regulation of defense response to virus" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0090085 "regulation of protein deubiquitination" evidence=ISO

UNIPROTKB|G3V8C2 Itch "E3 ubiquitin-protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPMSKLCFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AGLD 101

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

UNIPROTKB|J9NTN8 ITCH "E3 ubiquitin-protein ligase" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AALD 101

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1202301 Itch "itchy, E3 ubiquitin protein ligase" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPTSKLCFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AGLD 101

GO:0000151 "ubiquitin ligase complex" evidence=ISA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0002669 "positive regulation of T cell anergy" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISA;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISA;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISO;ISA

GO:0016874 "ligase activity" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IMP

GO:0035519 "protein K29-linked ubiquitination" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0043021 "ribonucleoprotein complex binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=ISO

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP;IDA

GO:0046329 "negative regulation of JNK cascade" evidence=IMP

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IMP

GO:0050687 "negative regulation of defense response to virus" evidence=ISO;IMP

GO:0051607 "defense response to virus" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO;IMP

GO:0090085 "regulation of protein deubiquitination" evidence=IMP

UNIPROTKB|E2QXM7 ITCH "E3 ubiquitin-protein ligase" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    51 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 109

Query:    95 KRLN 98
               L+
Sbjct:   110 AALD 113

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q96J02 ITCH "E3 ubiquitin-protein ligase Itchy homolog" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AALD 101

GO:0006915 "apoptotic process" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;NAS;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;NAS

GO:0006954 "inflammatory response" evidence=NAS

GO:0001558 "regulation of cell growth" evidence=NAS

GO:0005634 "nucleus" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0046718 "viral entry into host cell" evidence=TAS

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0043021 "ribonucleoprotein complex binding" evidence=IPI

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0035519 "protein K29-linked ubiquitination" evidence=IDA

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0045236 "CXCR chemokine receptor binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0046329 "negative regulation of JNK cascade" evidence=ISS

GO:0090085 "regulation of protein deubiquitination" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MGQ5 ITCH "E3 ubiquitin-protein ligase" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
             P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct:    39 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 97

Query:    95 KRLN 98
               L+
Sbjct:    98 AGLD 101

GO:0090085 "regulation of protein deubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0050687 "negative regulation of defense response to virus" evidence=IEA

GO:0046642 "negative regulation of alpha-beta T cell proliferation" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0045236 "CXCR chemokine receptor binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0035519 "protein K29-linked ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002669 "positive regulation of T cell anergy" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y0H4	SUDX_DROME	6, ., 3, ., 2, ., -	0.5116	0.8118	0.0864	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	2e-32
cd00030	102	cd00030, C2, C2 domain	2e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-13
pfam00168	85	pfam00168, C2, C2 domain	7e-13
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	6e-08
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	6e-07
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	6e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	2e-05
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-05
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	7e-05
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	1e-04
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	1e-04
cd08686	118	cd08686, C2_ABR, C2 domain in the Active BCR (Brea	1e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-04
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-04
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-04
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	5e-04
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	6e-04
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-04
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	9e-04
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.001
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.001
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	0.001
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	0.002
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.004

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score =  109 bits (274), Expect = 2e-32
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 13 QLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
          QL   VE A L+         KP+PY+E+ VD + PK T V K T  PKWNE FTVLV+P
Sbjct: 3  QLQITVESAKLKSNS---KSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP 59

Query: 73 YSIILFRLLDHRTFRRDCTIGEKRLN 98
           S + F++  H T + D  +GE  L+
Sbjct: 60 QSTLEFKVWSHHTLKADVLLGEASLD 85

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 65.6 bits (160), Expect = 2e-15
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 15  LQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY- 73
           + ++E  +L      G   K +PY+++ +  K    T+VVKNT  P WNE F   V    
Sbjct: 3   VTVIEARNLPAKDLNG---KSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 74  -SIILFRLLDHRTFRRDCTIGEKRLNTST 101
              +   + D   F +D  +GE  +  S 
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSE 88

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 59.8 bits (145), Expect = 3e-13
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP-- 72
          ++   +L    +GG   K +PY+++ +D    +   T+VVKNT  P WNE F   V P  
Sbjct: 6  IISARNLPPKDKGG---KSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE 62

Query: 73 YSIILFRLLDHRTFRRDCTIGE 94
           + +   + D   F RD  IG+
Sbjct: 63 LAELEIEVYDKDRFGRDDFIGQ 84

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 58.4 bits (142), Expect = 7e-13
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
          ++   +L      G   K +PY+++ +    K+ K T+VVKNT  P WNE FT  V+   
Sbjct: 5  VISAKNLPPKDLNG---KSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPE 61

Query: 75 I--ILFRLLDHRTFRRDCTIGE 94
          +  +   + D+  F +D  IGE
Sbjct: 62 LAELRIEVYDYDRFGKDDFIGE 83

Length = 85

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR 88
          P+P+  + VD     +T V K T  PKWNE F + V P SII  ++ D + F++
Sbjct: 21 PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKK 74

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 20  CAHLRRGGQGGGLLKPNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSPYSIIL 77
              L+     GG    +PY+   +     +   T+V K+T  P WNE   +LV+  +  L
Sbjct: 11  ARGLKGSDIIGG--TVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYILVNSLTEPL 67

Query: 78  -FRLLDHRTFRRDCTIGEKRLNTST 101
              + D    R+D  IG    + S+
Sbjct: 68  NLTVYDFNDKRKDKLIGTAEFDLSS 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCT 91
            +PY ELY++ K   TTRV K T  P WN     LV+    S +   + D R  R D  
Sbjct: 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR-DRHDPV 70

Query: 92 IGE 94
          +G 
Sbjct: 71 LGS 73

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 37 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGE 94
          PY+ L +  +  KT RV+K    P WNEE T+ V +P + +   + D  TF +D ++GE
Sbjct: 24 PYVVLTLGNQKVKT-RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 31  GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR 88
              +P+PY+EL V  K  + ++V + T  P W E FT LV       +   + D +T   
Sbjct: 17  STKEPSPYVELTVG-KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--- 72

Query: 89  DCTIGEKRLNTST 101
             ++G   L  S 
Sbjct: 73  GKSLGSLTLPLSE 85

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 31  GLLKPNPY--IELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLD 82
           G    +PY  + L    K    K T V K T  P +NE F+  V    +    ++  ++D
Sbjct: 31  GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90

Query: 83  HRTFRRDCTIG 93
             +  R+  IG
Sbjct: 91  KDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 31 GLLKPNPYIELYVDYKNPKTTRVVKN--TYQPKWNEEFTVLVSPYSI------ILFRLLD 82
             K   Y  +++D  + ++T V ++  T  P WNE     +    +      +   +  
Sbjct: 17 LFGKMKVYAVVWIDPSHKQSTPVDRDGGTN-PTWNETLRFPLDERLLQQGRLALTIEVYC 75

Query: 83 HRTFRRDCTIGEKRL 97
           R    D  IGE R+
Sbjct: 76 ERPSLGDKLIGEVRV 90

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 35 PNPYIELYVDYKNPK-TTRVVKNTYQPKWNEE--FTVLVSP-YSIILFRLLDHRTFRRDC 90
           +PY+E  V +   K  T V KN+Y P+WNE+  F  +  P    I  ++ D      D 
Sbjct: 35 VDPYVE--VSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDD 92

Query: 91 TIG 93
           IG
Sbjct: 93 VIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 32  LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF 86
           ++  +PY+ + V       TRV+KN+ +P W+E+F + ++ P++ + F++ D   F
Sbjct: 74  VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF 129

Length = 868

>gnl|CDD|176068 cd08686, C2_ABR, C2 domain in the Active BCR (Breakpoint cluster region) Related protein

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 29 GGGLLKP-NPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTV 68
            G  +  N Y  L VD    +     TRV ++T +P WNEEF +
Sbjct: 8  AQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEI 52

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 34  KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV----SPYSIILFRLLDHRTFRRD 89
             +PYI +    +    TRV KNT  P WNE F +L+     P ++ L+   D  +F+ D
Sbjct: 458 TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLY---DFNSFKSD 514

Query: 90  CTIGEKRLN 98
             +G  +L+
Sbjct: 515 KVVGSTQLD 523

Length = 1227

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 49  KTTRVVKNTYQPKWNEE--FTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNTST 101
           K T V K T  P +NE   F    SP      II   + D R+ R D  IG  +L+  T
Sbjct: 34  KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 34 KPNPYIELYVDYKNPK---TTRVVKNTYQPKWNEEFTVLVSPYS--IILFRLLDHRTFRR 88
            +PY+ L VD    +    TR + +T  P+W+EEF + V       I   + D     +
Sbjct: 21 LSDPYVTL-VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79

Query: 89 DCTIG 93
              G
Sbjct: 80 HDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 48  PKTTRVVKNTYQPKWNEEFTVLVSPY------SIILFRLLDHRTFRRDCTIGE 94
              T+V K T  P ++E F   V P       +++LF + D+     +   GE
Sbjct: 56  TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGE 108

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 30 GGLLKP--NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
          GGL+K   +PY+ + V  +  K+ +V+K    PKWNE +  +V  
Sbjct: 21 GGLVKGKSDPYVIVRVGAQTFKS-KVIKENLNPKWNEVYEAVVDE 64

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 37   PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS 71
            P+++L+++ K+   T+VVK T  P WNEEFT+ V 
Sbjct: 1063 PFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVL 1097

Length = 1227

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 32 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRDC 90
          L  P+   E+     +   T+ +K T  PKWNEEF   V+P    +LF + D     RD 
Sbjct: 29 LYDPDGNGEI-----DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDD 83

Query: 91 TIGE 94
           +G+
Sbjct: 84 FLGQ 87

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 28 QGGGLL-KPNPYIELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP 72
            G LL  P+ Y+EL++   + +   T+ +KN+  P WNE F   +  
Sbjct: 13 TKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 36  NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRTFRR 88
           +P++++Y+  D K+   T+V +    P WNE F     PY  +  R+L     D+  F R
Sbjct: 38  DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSR 97

Query: 89  DCTIGE 94
           +  IGE
Sbjct: 98  NDPIGE 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 19/77 (24%)

Query: 15 LQLVECAHLR---RGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFT 67
          + ++   +L    R G      K +P+++ Y++    +K    T+ +K T  P WNE F 
Sbjct: 3  VDVISAENLPSADRNG------KSDPFVKFYLNGEKVFK----TKTIKKTLNPVWNESFE 52

Query: 68 VLVSP--YSIILFRLLD 82
          V V     +++   + D
Sbjct: 53 VPVPSRVRAVLKVEVYD 69

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 32 LLKPNPYIELYVDYKNP-KTTRVVKNTYQ-PKWNEEFTVLVSPYSI------ILFRLLDH 83
          L K +PY+ +    +   + ++V K   + P+WNE+F   V  Y        ++ R++D 
Sbjct: 19 LGKIDPYVII--QCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGGDTKLILRIMDK 75

Query: 84 RTFRRDCTIGE 94
            F  D  IGE
Sbjct: 76 DNFSDDDFIGE 86

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 33  LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV 70
            K N   ELY + K   +T  +K T  P WN ++ VLV
Sbjct: 597 KKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLV 634

Length = 1227

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 30 GGLLKPNPYIELYV-DYKNPKTTRVVKNTYQPKWNE--EFTVLVSPYSIILFRLLDHRTF 86
           G  K +PY  L V   +    T+ + NT  PKWN   EF +  +   ++   L D   F
Sbjct: 19 SGKGKSDPYAILSVGAQR--FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF 76

Query: 87 RRDCTIGE 94
               +GE
Sbjct: 77 AGKDYLGE 84

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 37 PYIELYVD-YKNPKTTRVVKNTYQPKWNEEFTVLVS 71
          PY+ + VD     KT+   K T  P WNEEFT  V 
Sbjct: 37 PYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH 71

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 34 KPNPYIELYV-----DYKNPKTTRVVK-NTYQPKWNE--EFTVLVSPYSIILFRLLDHRT 85
            +PY+E+ +     D      T+VVK N + P WNE  EF V V   + + F + D  +
Sbjct: 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDS 83

Query: 86 FRRD 89
             D
Sbjct: 84 GDDD 87

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 36 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGE 94
          +PY  + VD +    T  V  T  P W EE+TV + P    + F +LD  T  RD  IG+
Sbjct: 22 DPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 28 QGGGLLKPNPYIEL-YVDYKNPK-TTRVVKNTYQPKWNEEFTVLVSP 72
             G    +PY+   +  +  P  +TR+++    P W E + VLV+P
Sbjct: 16 ADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.91
KOG1030|consensus	168		99.89
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.88
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.88
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.88
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.87
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.87
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.87
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.87
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.87
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.86
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.86
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.86
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.86
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.85
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.85
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.85
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.85
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.85
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.85
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.84
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.84
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.84
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.84
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.84
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.84
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.84
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.83
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.83
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.83
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.83
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.83
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.83
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.83
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.83
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.82
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.82
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.82
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.82
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.82
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.81
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.8
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.8
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.8
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.8
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.8
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.8
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.8
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.79
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.79
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.79
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.79
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.78
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.78
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.78
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.78
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.78
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.78
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.77
KOG0696|consensus	683		99.77
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.77
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.77
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.75
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.75
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.75
KOG1028|consensus	421		99.74
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.74
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.73
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.73
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.7
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.67
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.67
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.67
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.61
PLN03008	868	Phospholipase D delta	99.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.6
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.58
KOG1028|consensus	421		99.56
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.54
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.53
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.48
KOG1011|consensus	1283		99.44
PLN02223	537	phosphoinositide phospholipase C	99.37
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.36
KOG2059|consensus	800		99.32
PLN02952	599	phosphoinositide phospholipase C	99.3
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.29
PLN02230	598	phosphoinositide phospholipase C 4	99.27
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.27
KOG0169|consensus	746		99.25
PLN02222	581	phosphoinositide phospholipase C 2	99.23
KOG1264|consensus	1267		99.18
PLN02228	567	Phosphoinositide phospholipase C	99.17
KOG1328|consensus	1103		99.1
PLN02270	808	phospholipase D alpha	99.06
KOG1031|consensus	1169		98.89
KOG1326|consensus	1105		98.74
KOG1013|consensus	362		98.58
KOG0905|consensus	1639		98.49
PLN02964	644	phosphatidylserine decarboxylase	98.37
KOG1013|consensus	362		98.35
PLN02352	758	phospholipase D epsilon	98.31
KOG2059|consensus	800		98.14
KOG1327|consensus	529		98.1
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.85
KOG1011|consensus	1283		97.76
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.61
KOG1326|consensus	1105		97.55
KOG1328|consensus	1103		97.4
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.34
KOG2060|consensus	405		97.27
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	97.14
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.93
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.91
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.9
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	96.84
KOG3837|consensus	523		96.82
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.74
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.74
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.68
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.54
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.53
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.87
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	95.77
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	95.76
KOG1265|consensus	1189		95.66
PF15627	156	CEP76-C2: CEP76 C2 domain	95.62
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	95.57
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	95.45
KOG1452|consensus	442		95.18
KOG1327|consensus	529		93.67
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	91.14
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	90.86
KOG0694|consensus	694		87.67
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	83.93

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.91  E-value=3.5e-23  Score=115.38  Aligned_cols=92  Identities=21%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      +...|.+..++|.|+|.+| +|+.      .+.+||||++++..   ..+++|++.+++.||.|||+|.|.++    +..
T Consensus         5 fsL~Y~~~~~~L~V~vikA~~L~~------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~   78 (118)
T cd08677           5 YSLSYDKQKAELHVNILEAENISV------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG   78 (118)
T ss_pred             EEEEEcCcCCEEEEEEEEecCCCC------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence            5668999999999999999 5652      25589999999842   23579999999999999999999997    567


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||+|.++++++||++.+++.
T Consensus        79 tL~~~V~d~Drfs~~d~IG~v~l~l~  104 (118)
T cd08677          79 TLTLTLRCCDRFSRHSTLGELRLKLA  104 (118)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEccc
Confidence            89999999999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>KOG1030|consensus

Probab=99.89  E-value=2.8e-22  Score=116.20  Aligned_cols=85  Identities=29%  Similarity=0.421  Sum_probs=75.6

Q ss_pred             cceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFR   87 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~   87 (101)
                      .+-|.|.+..+ +|..    .++ +++||||.+.+++++ .+|+++.++.||.|||.++|.+. +...|+++|||+|.++
T Consensus         5 vGLL~v~v~~g~~L~~----rD~~~sSDPyVVl~lg~q~-lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs   79 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAI----RDFLGSSDPYVVLELGNQK-LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS   79 (168)
T ss_pred             ceEEEEEEEeecCeee----eccccCCCCeEEEEECCee-eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC
Confidence            45688888888 6654    344 889999999999884 99999999999999999999998 7889999999999999


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                      .||++|.++++|.
T Consensus        80 ~dD~mG~A~I~l~   92 (168)
T KOG1030|consen   80 SDDFMGEATIPLK   92 (168)
T ss_pred             cccccceeeeccH
Confidence            9999999999874

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.88  E-value=2.4e-21  Score=109.78  Aligned_cols=97  Identities=21%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----   71 (101)
                      .+.-.|......|.|+|.+| +|+..   +.. +.+|||+++++.  .  ..+++|++++++.||.|||.|.|.+.    
T Consensus         5 ~~sl~y~~~~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l   81 (125)
T cd08393           5 QFALDYDPKLRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL   81 (125)
T ss_pred             EEEEEEECCCCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence            45678999999999999999 78763   433 678999999873  2  23479999999999999999999986    


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ....|.|+|||++..+++++||++.++|..
T Consensus        82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~  111 (125)
T cd08393          82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGS  111 (125)
T ss_pred             CCCEEEEEEEeCCCCCCCcEeEEEEEecCc
Confidence            356899999999999999999999999863

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.88  E-value=2.3e-21  Score=109.49  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=78.5

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEe-C----
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLV-S----   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~-~----   71 (101)
                      .+...|.  .+.|.|.|.+| +|+..   + .+.+||||++++..    ..+++|++++++.||.|+|+|.|.+ +    
T Consensus         5 ~~~l~y~--~~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l   78 (122)
T cd08381           5 KLSISYK--NGTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL   78 (122)
T ss_pred             EEEEEEe--CCEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence            3455677  68899999999 68773   4 67899999998852    2358999999999999999999987 3    


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ....|.|+|||++.++++++||++.++|+.
T Consensus        79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~  108 (122)
T cd08381          79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKK  108 (122)
T ss_pred             CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence            456899999999999999999999999863

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.88  E-value=2.9e-21  Score=109.81  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=81.6

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----   71 (101)
                      .+.-.|....++|.|.|.+| +|+..   +.. +.+||||++++..    ..+++|++++++.+|.|||+|.|.++    
T Consensus         5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l   81 (128)
T cd08392           5 EFALHYNFRTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL   81 (128)
T ss_pred             EEEEEEeCCCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence            35567999999999999999 78763   433 7889999998742    22579999999999999999999987    


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ....|.+.||+.+.++++++||++.++|+.
T Consensus        82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~  111 (128)
T cd08392          82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLAD  111 (128)
T ss_pred             CCcEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence            356999999999998899999999999863

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.87  E-value=7.3e-21  Score=107.61  Aligned_cols=97  Identities=24%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      .+...|.+..+.|.|+|..| +|+.   .+..+.+|||+++++.  +...++|++++++.+|.|+|.|.|.++    ...
T Consensus         6 ~~sl~y~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~   82 (124)
T cd08387           6 HFSLEYDKDMGILNVKLIQARNLQP---RDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR   82 (124)
T ss_pred             EEEEEECCCCCEEEEEEEEeeCCCC---CCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence            35567899999999999999 6876   3455779999999983  344689999999999999999999987    246


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      .|.|+|||.+.++++++||++.++++.
T Consensus        83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~  109 (124)
T cd08387          83 TLEVLLYDFDQFSRDECIGVVELPLAE  109 (124)
T ss_pred             EEEEEEEECCCCCCCceeEEEEEeccc
Confidence            899999999999899999999998863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.87  E-value=1e-20  Score=107.25  Aligned_cols=97  Identities=21%  Similarity=0.323  Sum_probs=80.8

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+.-.|.+..+.|.|.|.+| +|+..  ....+.+||||++++.  +  ..+++|++++++.+|.|+|+|.|.++    .
T Consensus         5 ~~sl~y~~~~~~L~V~Vi~a~~L~~~--~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~   82 (125)
T cd04029           5 LFSLSYDYKTQSLNVHVKECRNLAYG--DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLE   82 (125)
T ss_pred             EEEEEEECCCCeEEEEEEEecCCCcc--CCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhC
Confidence            45678999999999999999 67652  1224679999999874  2  23579999999999999999999986    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+||+++..+++++||++.+++.
T Consensus        83 ~~~L~~~V~d~~~~~~~~~lG~~~i~l~  110 (125)
T cd04029          83 TRTLQLSVWHYDRFGRNTFLGEVEIPLD  110 (125)
T ss_pred             CCEEEEEEEECCCCCCCcEEEEEEEeCC
Confidence            5689999999999999999999999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=7.1e-21  Score=107.13  Aligned_cols=84  Identities=23%  Similarity=0.336  Sum_probs=72.7

Q ss_pred             ceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         12 LQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        12 ~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      +.|.|+|.+|+ +++   .+ .+.+||||.+.+++. +.+|+++.+ +.||.|||+|.|.+. ....|.|+|||.+.+++
T Consensus         2 g~L~v~v~~Ak~l~~---~~-~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~   76 (121)
T cd04016           2 GRLSITVVQAKLVKN---YG-LTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTM   76 (121)
T ss_pred             cEEEEEEEEccCCCc---CC-CCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcC
Confidence            57999999995 444   23 688999999999887 479999876 799999999999997 45689999999999999


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      |++||.+.+++.
T Consensus        77 dd~iG~~~i~l~   88 (121)
T cd04016          77 DERIAWTHITIP   88 (121)
T ss_pred             CceEEEEEEECc
Confidence            999999999884

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.87  E-value=1e-20  Score=107.60  Aligned_cols=97  Identities=25%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEE-EeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTV-LVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~-~~~----~   72 (101)
                      .+...|.....+|.|+|.+| +|+..   +.. +.+||||++.+.  ...+.+|++++++.||.|+|+|.| .++    .
T Consensus         6 ~~~l~y~~~~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~   82 (128)
T cd08388           6 FFSLRYNSEKKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ   82 (128)
T ss_pred             EEEEEEECCCCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence            35567999999999999999 68763   443 778999999874  233479999999999999999998 454    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ...|.++||+++.++++++||++.++|+.
T Consensus        83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~  111 (128)
T cd08388          83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAG  111 (128)
T ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeccc
Confidence            45799999999999999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.87  E-value=5.7e-21  Score=108.01  Aligned_cols=95  Identities=16%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C---cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y---KNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~---~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      +.-.|.+..++|.|.|.+| +|+..   +..+.+||||++++-  .   ..+++|++++++.||.|||+|.|.++    .
T Consensus         5 ~sL~Y~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           5 IGLRYDSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             EEEEECCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            4568999999999999999 78763   444678999999863  2   23589999999999999999999987    4


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+||+.+..+++++||++.++|.
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~  109 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLA  109 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhh
Confidence            5799999999999999999999999975

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.87  E-value=1.3e-20  Score=106.59  Aligned_cols=97  Identities=28%  Similarity=0.306  Sum_probs=81.7

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      -+...|....++|.|+|.+| +|+.   .+..+.+|||+++.+..  ..+++|++++++.+|.|+|.|.|.+.    ...
T Consensus         6 ~~~l~y~~~~~~L~V~v~~a~~L~~---~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~   82 (124)
T cd08385           6 QFSLDYDFQSNQLTVGIIQAADLPA---MDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNK   82 (124)
T ss_pred             EEEEEEeCCCCEEEEEEEEeeCCCC---ccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCC
Confidence            34568888999999999999 6876   34557789999998742  23579999999999999999999986    246


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      .|.|+|||++.++++++||++.++++.
T Consensus        83 ~l~~~V~d~d~~~~~~~lG~~~i~l~~  109 (124)
T cd08385          83 TLVFSVYDFDRFSKHDLIGEVRVPLLT  109 (124)
T ss_pred             EEEEEEEeCCCCCCCceeEEEEEecCc
Confidence            899999999999899999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.86  E-value=7.9e-21  Score=109.09  Aligned_cols=98  Identities=20%  Similarity=0.277  Sum_probs=80.6

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+.-.|.+..++|.|.|.+| +|+.... +..+.+||||++++...    .+++|++.+++.||+|||.|.|.++    .
T Consensus         5 ~~sL~Y~~~~~~L~V~V~karnL~~~d~-~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~   83 (138)
T cd08407           5 LLSISYLPAANRLLVVVIKAKNLHSDQL-KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA   83 (138)
T ss_pred             EEEEEEeCCCCeEEEEEEEecCCCcccc-CCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence            35668999999999999999 7876311 12345899999987432    2479999999999999999999997    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+||+.+.++++++||++.+++.
T Consensus        84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~  111 (138)
T cd08407          84 ASSVELEVLNQDSPGQSLPLGRCSLGLH  111 (138)
T ss_pred             ccEEEEEEEeCCCCcCcceeceEEecCc
Confidence            6789999999999999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.86  E-value=1.2e-20  Score=108.21  Aligned_cols=95  Identities=18%  Similarity=0.280  Sum_probs=80.4

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+...|.+...+|.|+|.+| +|+.   .+..+.+||||++++.  +.  .+.+|++++++.||.|||+|.|.++    .
T Consensus         5 ~~sL~Y~~~~~~L~V~Vi~A~nL~~---~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~   81 (136)
T cd08406           5 LLSLSYLPTAERLTVVVVKARNLVW---DNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ   81 (136)
T ss_pred             EEEEEEcCCCCEEEEEEEEeeCCCC---ccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence            45667999999999999999 6876   3455789999999873  22  2468999999999999999999987    4


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      ...|.|+||+++..+++++||++.++.
T Consensus        82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~  108 (136)
T cd08406          82 DLSLRVTVAESTEDGKTPNVGHVIIGP  108 (136)
T ss_pred             CcEEEEEEEeCCCCCCCCeeEEEEECC
Confidence            678999999999999999999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=7.8e-21  Score=107.61  Aligned_cols=84  Identities=27%  Similarity=0.355  Sum_probs=72.3

Q ss_pred             eEEEEEEee-E---eCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCC
Q psy16330         13 QLLQLVECA-H---LRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFR   87 (101)
Q Consensus        13 ~l~v~i~~a-~---l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~   87 (101)
                      .|+|+|.+| +   |+.   .+..|.+||||.+.+++. +.||++++++.||.|||+|.|.+. +...|.|+|||.+..+
T Consensus         1 ~L~v~v~~A~~~~~l~~---~d~~g~sDPYv~i~~g~~-~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRA---KDGRGSTDAYCVAKYGPK-WVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccc---cccCCCCCeeEEEEECCE-EeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc
Confidence            378999999 5   544   456688999999999877 589999999999999999999986 5678999999998773


Q ss_pred             ------CCCeeEEEEEECC
Q psy16330         88 ------RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ------~~~~iG~~~~~l~  100 (101)
                            .|++||++.++++
T Consensus        77 ~~~~~~~dd~lG~~~i~l~   95 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLS   95 (126)
T ss_pred             ccccCCCCceEEEEEEEHH
Confidence                  8999999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.86  E-value=2.7e-20  Score=107.65  Aligned_cols=90  Identities=21%  Similarity=0.279  Sum_probs=74.3

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEE-e
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLL-D   82 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~-~   82 (101)
                      ..++|.|.|.+| +|+..  .+..+.+||||++++..  .  .+++|++++++.||.|||+|.|.+. ....|.++|| +
T Consensus        27 ~~~~L~V~Vi~ArnL~~~--~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d  104 (146)
T cd04028          27 KKGQLEVEVIRARGLVQK--PGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGD  104 (146)
T ss_pred             CCCEEEEEEEEeeCCCcc--cCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeC
Confidence            357899999999 67652  12346789999999842  2  2589999999999999999999997 6779999999 5


Q ss_pred             CCCCCCCCeeEEEEEECCC
Q psy16330         83 HRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~~  101 (101)
                      ++.++++++||++.++|+.
T Consensus       105 ~~~~~~~~~iG~~~i~L~~  123 (146)
T cd04028         105 YGRMDKKVFMGVAQILLDD  123 (146)
T ss_pred             CCCCCCCceEEEEEEEccc
Confidence            7788889999999999863

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.85  E-value=2.7e-20  Score=105.54  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=75.3

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEEeCC
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHR   84 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~~~~   84 (101)
                      +..++|.|+|.+| +|+.    +..+.+|||+++++++. +++|++++++.+|.|+|+|.|...   ....|.|+|||++
T Consensus        25 ~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d   99 (127)
T cd04032          25 RGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD   99 (127)
T ss_pred             CCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence            4568999999999 5754    34577899999999877 699999999999999999998742   4679999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      ..++|++||++.++|.
T Consensus       100 ~~s~dd~IG~~~i~l~  115 (127)
T cd04032         100 NGWDDDLLGTCSVVPE  115 (127)
T ss_pred             CCCCCCeeEEEEEEec
Confidence            9999999999999875

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=2.1e-20  Score=105.06  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----c--CceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEE
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----K--NPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRL   80 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~--~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v   80 (101)
                      +|.|+|.+| +|+..   + .|.+|||+++++-+    .  .+++|+++.++.||.|||+|.|.+..     ...|.|.+
T Consensus         1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V   76 (120)
T cd08395           1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV   76 (120)
T ss_pred             CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence            478999999 68762   3 47899999999732    2  24689999999999999999999862     23689999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||++..+++++||++.++++
T Consensus        77 ~D~d~~~~dd~IG~~~l~l~   96 (120)
T cd08395          77 KDYCFARDDRLVGVTVLQLR   96 (120)
T ss_pred             EEecccCCCCEEEEEEEEHH
Confidence            99997778999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=2.7e-20  Score=104.89  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCC
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~   90 (101)
                      +|.|+|..| +|+.   .+..+.+|||+++.+++...++|+++.++.+|.|+|.|.|.+. ....|.|++||++..++++
T Consensus         1 ~L~v~v~~a~~L~~---~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAA---RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCC---cCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCc
Confidence            578999999 6876   3455789999999998755689999999999999999999987 4679999999999998999


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.++++
T Consensus        78 ~iG~~~~~l~   87 (121)
T cd04042          78 FMGSAFVDLS   87 (121)
T ss_pred             ceEEEEEEHH
Confidence            9999999874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.85  E-value=8e-20  Score=103.13  Aligned_cols=97  Identities=20%  Similarity=0.319  Sum_probs=82.0

Q ss_pred             CceecccccccceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          1 MFLLQDYFSSVLQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         1 ~~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      |.+..+|.+..++|.|.|..| +|+..   + ..+.+|||+.+++.  +....+|++++++.+|.|+|.|.|.+.    .
T Consensus         3 l~~~l~y~~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~   79 (123)
T cd08390           3 LWFSVQYDLEEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ   79 (123)
T ss_pred             EEEEEEECCCCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence            356778999999999999999 68763   3 45778999999873  333578999999999999999999987    2


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|.||+.+..+++++||++.++|+
T Consensus        80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~  107 (123)
T cd08390          80 RRTLRLSVYDVDRFSRHCIIGHVLFPLK  107 (123)
T ss_pred             ccEEEEEEEECCcCCCCcEEEEEEEecc
Confidence            4589999999998888999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=4.4e-20  Score=104.43  Aligned_cols=95  Identities=23%  Similarity=0.274  Sum_probs=79.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-----~   72 (101)
                      +-..|.+..++|.|+|.+| +|+.   .+..+.+|||+++.+.+    ..+++|++++++.+|.|+|.|.|.+.     .
T Consensus         7 ~~l~~~~~~~~L~V~vi~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~   83 (125)
T cd04031           7 IQLWYDKVTSQLIVTVLQARDLPP---RDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLK   83 (125)
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCC---cCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhC
Confidence            4456888899999999999 6876   34557899999998853    23579999999999999999999853     2


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||.+..+.+++||++.++|+
T Consensus        84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~  111 (125)
T cd04031          84 ERTLEVTVWDYDRDGENDFLGEVVIDLA  111 (125)
T ss_pred             CCEEEEEEEeCCCCCCCcEeeEEEEecc
Confidence            4689999999999888999999999986

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=2.8e-20  Score=105.55  Aligned_cols=83  Identities=17%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-------CCEEEEEEEeCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------YSIILFRLLDHRT   85 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-------~~~l~~~v~~~~~   85 (101)
                      +.|+|.+| +|+.   .+..+.+||||.+.+++. +++|++++++.||.|+|.|.|.+..       ...|.+++|+++.
T Consensus         1 ~~V~V~~A~~L~~---~d~~g~~dpYv~v~l~~~-~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~   76 (126)
T cd08682           1 VQVTVLQARGLLC---KGKSGTNDAYVIIQLGKE-KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL   76 (126)
T ss_pred             CEEEEEECcCCcC---CCCCcCCCceEEEEECCe-eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence            46888999 6876   345578999999999876 5899999999999999999998863       4589999999999


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      +++|++||++.++++
T Consensus        77 ~~~d~~iG~~~i~l~   91 (126)
T cd08682          77 LGLDKFLGQVSIPLN   91 (126)
T ss_pred             cCCCceeEEEEEEHH
Confidence            888999999999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.85  E-value=3.9e-20  Score=102.42  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             ceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEEeCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHRTF   86 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~~~~~~   86 (101)
                      +.|.|+|.+| +|+...... ..+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+.   ....|.|+|||++..
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~-~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR-VFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCE-eEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            4688999999 687631111 1134799999999765 589999999999999999999885   234799999999999


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      ++|++||++.++|+
T Consensus        80 ~~dd~IG~~~l~L~   93 (108)
T cd04039          80 SFNDYVATGSLSVQ   93 (108)
T ss_pred             CCCcceEEEEEEHH
Confidence            99999999999875

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=8.4e-20  Score=104.38  Aligned_cols=95  Identities=21%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +...|....+.|.|+|.+| +|+.   .+..+.+||||++.+.+    ..+++|++++++.+|.|+|+|.|.+.    ..
T Consensus         4 ~~l~y~~~~~~L~V~Vi~a~~L~~---~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           4 VSLMYNTQRRGLIVGIIRCVNLAA---MDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             EEEEEcCCCCEEEEEEEEEcCCCC---cCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            4567999999999999999 6876   35557899999998742    23589999999999999999999986    24


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+|||.+..+++++||++.+++.
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~  107 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGIN  107 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecC
Confidence            689999999998888999999999875

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.85  E-value=4.2e-20  Score=106.02  Aligned_cols=96  Identities=27%  Similarity=0.331  Sum_probs=80.5

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+...|......|.|+|.+| +|+.   .+..+.+||||++.+..  .  .+++|++++++.+|.|+|+|.|.++    .
T Consensus         5 ~~~l~y~~~~~~L~V~vi~a~~L~~---~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~   81 (136)
T cd08404           5 LLSLCYQPTTNRLTVVVLKARHLPK---MDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE   81 (136)
T ss_pred             EEEEEEeCCCCeEEEEEEEeeCCCc---cccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence            45567888899999999999 6876   35567899999998742  2  2478999999999999999999987    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++.++++++||++.+++.
T Consensus        82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~  109 (136)
T cd08404          82 DISVEFLVLDSDRVTKNEVIGRLVLGPK  109 (136)
T ss_pred             CCEEEEEEEECCCCCCCccEEEEEECCc
Confidence            5579999999999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.84  E-value=5.9e-20  Score=105.45  Aligned_cols=89  Identities=22%  Similarity=0.423  Sum_probs=77.4

Q ss_pred             ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCC
Q psy16330          8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHR   84 (101)
Q Consensus         8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~   84 (101)
                      ....+.|.|+|..| +|+.   .+..+.+||||++.+++. .++|++++++.||.|++.|.|.+.  ....|.|+|||.+
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~---~d~~g~~DPYv~v~~~~~-~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d   86 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKP---CNSNGKSDPYCEVSMGSQ-EHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD   86 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCC---CCCCCCcCcEEEEEECCE-eeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence            46678999999999 6876   355688999999999766 599999999999999999999986  3568999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      ..+.|++||++.+++.
T Consensus        87 ~~~~d~~lG~~~i~l~  102 (136)
T cd08375          87 FFSPDDFLGRTEIRVA  102 (136)
T ss_pred             CCCCCCeeEEEEEEHH
Confidence            9888999999999874

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.84  E-value=9.7e-20  Score=103.08  Aligned_cols=97  Identities=23%  Similarity=0.306  Sum_probs=80.5

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC-----CC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PY   73 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~   73 (101)
                      -+...|......|.|+|.+| +|+.   .+..+.+|||+.+.+.  +..+.+|++++++.+|.|+|+|.|...     ..
T Consensus         6 ~~~l~y~~~~~~L~v~v~~a~~L~~---~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~   82 (125)
T cd08386           6 QFSVSYDFQESTLTLKILKAVELPA---KDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQ   82 (125)
T ss_pred             EEEEEECCCCCEEEEEEEEecCCCC---ccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCC
Confidence            35567888999999999999 6876   3455778999999873  333589999999999999999998742     24


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ..|.+++||++..+++++||++.++++.
T Consensus        83 ~~l~~~v~d~d~~~~~~~iG~~~i~l~~  110 (125)
T cd08386          83 RVLYLQVLDYDRFSRNDPIGEVSLPLNK  110 (125)
T ss_pred             CEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence            5799999999999899999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.84  E-value=1.1e-19  Score=103.11  Aligned_cols=96  Identities=24%  Similarity=0.344  Sum_probs=80.6

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+.-.|.+..++|.|+|.+| +|+.   .+..+.+||||++.+..    ..+++|++++++.+|.|+|+|.|.+.    .
T Consensus         6 ~~~l~y~~~~~~L~V~vi~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~   82 (127)
T cd04030           6 QLTIRYSSQRQKLIVTVHKCRNLPP---CDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELK   82 (127)
T ss_pred             EEEEEEeCCCCEEEEEEEEEECCCC---ccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhc
Confidence            45567899999999999999 6876   34557899999998742    23589999999999999999999986    2


Q ss_pred             CCEEEEEEEeCCCC--CCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTF--RRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~--~~~~~iG~~~~~l~  100 (101)
                      ...|.+.+|+.+.+  +++++||++.+++.
T Consensus        83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~  112 (127)
T cd04030          83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLS  112 (127)
T ss_pred             CCEEEEEEEECCcccCCCCceEEEEEEecc
Confidence            46899999999875  68899999999986

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.84  E-value=5.4e-20  Score=105.24  Aligned_cols=96  Identities=22%  Similarity=0.200  Sum_probs=80.4

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC------cCceeeeeecCCCCCeeceEEEEEeCC--
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSP--   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~------~~~~~T~~~~~~~~P~w~e~~~~~~~~--   72 (101)
                      .+...|......|.|+|.+| +|+.   .+..+.+|||+++++.+      ..+++|++++++.+|.|+|+|.|.+..  
T Consensus         6 ~~~l~y~~~~~~L~V~Vi~A~~L~~---~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   82 (133)
T cd04009           6 TVKAYYRASEQSLRVEILNARNLLP---LDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQ   82 (133)
T ss_pred             EEEEEEcCCCCEEEEEEEEeeCCCC---cCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhh
Confidence            34567888889999999999 6876   34557899999998742      235899999999999999999999862  


Q ss_pred             ----CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 ----YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ----~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                          ...|.|+|||++..+++++||++.++|+
T Consensus        83 ~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~  114 (133)
T cd04009          83 CSVEGALLLFTVKDYDLLGSNDFEGEAFLPLN  114 (133)
T ss_pred             cccCCCEEEEEEEecCCCCCCcEeEEEEEeHH
Confidence                3589999999999988999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=8.9e-20  Score=102.91  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeCC---
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP---   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~~---   72 (101)
                      .+...|....+.|.|+|.+| +|+..   + ..+.+||||++++..  .  .+++|++++++.+|.|+|+|.|.+..   
T Consensus         4 ~~~l~y~~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           4 EFSLSYNYKTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             EEEEEEeCCCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            45568889999999999999 68763   3 346789999998732  1  35899999999999999999999872   


Q ss_pred             -CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 -YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 -~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                       ...|.|++|+.+..+++++||++.++|+
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~  109 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLD  109 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecc
Confidence             5689999999999989999999999975

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.84  E-value=6.9e-20  Score=101.88  Aligned_cols=86  Identities=24%  Similarity=0.380  Sum_probs=72.3

Q ss_pred             ceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEEEe
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLD   82 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v~~   82 (101)
                      +.|.|+|.+| +|+.   .+.. +.+||||++.+.+  ...++|++++++.+|.|+|.|.|.+..     ...|.|+|||
T Consensus         1 G~L~V~v~~a~~L~~---~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           1 GVLVVTIHRATDLPK---ADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             CEEEEEEEEeeCCCc---ccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence            4689999999 6876   3445 7899999998743  335899999999999999999997762     3589999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++.++.|++||++.++++
T Consensus        78 ~d~~~~dd~lG~~~i~l~   95 (111)
T cd04041          78 SDRFTADDRLGRVEIDLK   95 (111)
T ss_pred             CCCCCCCCcceEEEEEHH
Confidence            999989999999999874

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.84  E-value=1.3e-19  Score=104.00  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+...|.+..++|.|+|.+| +|+.   .+..+.+|||+++.+.  +  ..+++|++++++.+|.|+|.|.|.++    .
T Consensus         5 ~~sl~y~~~~~~L~v~vi~a~~L~~---~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~   81 (136)
T cd08405           5 LLSLCYNPTANRITVNIIKARNLKA---MDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR   81 (136)
T ss_pred             EEEEEEcCCCCeEEEEEEEeeCCCc---cccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence            45568889999999999999 6876   3456789999999873  2  22478999999999999999999986    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||.+.++++++||++.+++.
T Consensus        82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~  109 (136)
T cd08405          82 ETTLIITVMDKDRLSRNDLIGKIYLGWK  109 (136)
T ss_pred             CCEEEEEEEECCCCCCCcEeEEEEECCc
Confidence            4689999999999989999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.83  E-value=1.3e-19  Score=104.23  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---c--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---K--NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~--~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      +...|....++|.|+|.+| +|+.   .+..+.+||||++.+..   .  .+++|++.+++.+|.|||+|.|.++    .
T Consensus         6 ~sL~Y~~~~~~L~V~VikarnL~~---~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~   82 (138)
T cd08408           6 LGLEYNALTGRLSVEVIKGSNFKN---LAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS   82 (138)
T ss_pred             EEeEEcCCCCeEEEEEEEecCCCc---cccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence            4567999999999999999 7876   34557789999998732   1  2479999999999999999999997    4


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+||+.+..+++++||++.+++.
T Consensus        83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~  110 (138)
T cd08408          83 EVTLMFSVYNKRKMKRKEMIGWFSLGLN  110 (138)
T ss_pred             ccEEEEEEEECCCCCCCcEEEEEEECCc
Confidence            5699999999999999999999998764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.83  E-value=1.4e-19  Score=103.81  Aligned_cols=95  Identities=22%  Similarity=0.286  Sum_probs=79.8

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+|||+++.+.  +.  .+++|++++++.+|.|+|.|.|.+..    .
T Consensus         6 ~~l~y~~~~~~l~V~Vi~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~   82 (136)
T cd08402           6 FSLRYVPTAGKLTVVILEAKNLKK---MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQK   82 (136)
T ss_pred             EEeEEcCCCCeEEEEEEEeeCCCc---ccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCC
Confidence            4568999999999999999 6876   3455789999999874  22  24789999999999999999999872    3


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|++||.+.++++++||++.+++.
T Consensus        83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~  109 (136)
T cd08402          83 VHLIVTVLDYDRIGKNDPIGKVVLGCN  109 (136)
T ss_pred             CEEEEEEEeCCCCCCCceeEEEEECCc
Confidence            489999999999999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.83  E-value=1.6e-19  Score=103.50  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=79.2

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC-Cc---CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD-YK---NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~-~~---~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+...|.+..+.|.|+|.+| +|+.   .+..+.+||||++.+. +.   .+++|++++++.||.|+|+|.|.+.    .
T Consensus         4 ~~~l~y~~~~~~L~V~vi~a~~L~~---~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           4 LLSLNYLPSAGRLNVDIIRAKQLLQ---TDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             EEEEEECCCCCeEEEEEEEecCCCc---ccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            46678999999999999999 6876   3556789999999873 22   2478999999999999999999986    3


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      ...|.|+|||++..+++++||++.+..
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence            447999999999989999999988653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.83  E-value=1.4e-19  Score=103.57  Aligned_cols=97  Identities=21%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             CceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeC----
Q psy16330          1 MFLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVS----   71 (101)
Q Consensus         1 ~~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~----   71 (101)
                      |.+...|.+..+.|.|+|.+| +|+.   .+..+.+|||+++.+.  +.  .+++|++++++.+|.|+|.|.|.+.    
T Consensus         3 l~~~~~y~~~~~~L~V~v~~A~~L~~---~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~   79 (134)
T cd08403           3 LMFSLCYLPTAGRLTLTIIKARNLKA---MDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV   79 (134)
T ss_pred             EEEEEEEcCCCCEEEEEEEEeeCCCc---cccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence            356778999999999999999 6876   3556789999999873  22  2478999999999999999999886    


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ....|.|+|||++..+++++||++.+++.
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          80 DNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            23479999999999999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.83  E-value=1.9e-19  Score=101.78  Aligned_cols=84  Identities=32%  Similarity=0.575  Sum_probs=72.9

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCC--CC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR--DC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~--~~   90 (101)
                      |.|+|.+| +|+.   .+.++.+|||+.+.+++...++|++++++.+|.|+|.|.|.+.....|.|+|||++.++.  ++
T Consensus         2 l~v~v~~A~~L~~---~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAK---RDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCc---cCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCc
Confidence            78899999 6876   355678999999999755569999999999999999999999878899999999988765  57


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.+++.
T Consensus        79 ~lG~~~i~l~   88 (123)
T cd08382          79 FLGCVRIRAN   88 (123)
T ss_pred             eEeEEEEEHH
Confidence            9999999875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.83  E-value=2e-19  Score=101.85  Aligned_cols=96  Identities=25%  Similarity=0.223  Sum_probs=79.8

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEE-eC----CC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PY   73 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~   73 (101)
                      .+...|.+...+|.|+|.+| +|+..   +..+.+|||+.+.+.  ...+++|++.++ .||.|||+|.|. ++    ..
T Consensus         6 ~~sl~Y~~~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~   81 (124)
T cd08389           6 DVAFEYDPSARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN   81 (124)
T ss_pred             EEEEEECCCCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence            45668999999999999999 68763   445678999998763  334589999887 999999999998 65    45


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ..|.++||+++.++++++||++.++|+.
T Consensus        82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~  109 (124)
T cd08389          82 MALRFRLYGVERMRKERLIGEKVVPLSQ  109 (124)
T ss_pred             CEEEEEEEECCCcccCceEEEEEEeccc
Confidence            6899999999999999999999999863

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.83  E-value=3.6e-19  Score=100.88  Aligned_cols=86  Identities=45%  Similarity=0.724  Sum_probs=75.3

Q ss_pred             ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCCCCe
Q psy16330         12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCT   91 (101)
Q Consensus        12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~~~~   91 (101)
                      .+|.|+|.+|+|..   .+..+.+|||+.+.+++...++|++++++.+|.|+|.|.|.+.....|.|+|||++..+.+++
T Consensus         2 ~~L~V~i~~a~l~~---~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           2 SQLQITVESAKLKS---NSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             ceEEEEEEeeECCC---CCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcE
Confidence            57899999997655   244678999999999876569999999999999999999998877899999999999989999


Q ss_pred             eEEEEEECC
Q psy16330         92 IGEKRLNTS  100 (101)
Q Consensus        92 iG~~~~~l~  100 (101)
                      ||++.++|.
T Consensus        79 iG~~~i~l~   87 (125)
T cd04021          79 LGEASLDLS   87 (125)
T ss_pred             EEEEEEEHH
Confidence            999999874

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.83  E-value=2.5e-19  Score=101.04  Aligned_cols=85  Identities=21%  Similarity=0.327  Sum_probs=71.8

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCCCCCCCe
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCT   91 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~~~~~~~   91 (101)
                      |.|+|..| +|+..  ....+.+||||.+.+++...++|++++++.+|.|+|+|.|.+.. ...|.|.+|+++.++++++
T Consensus         2 l~v~v~~a~~L~~~--~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPR--SGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCC--CCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCce
Confidence            67888888 67762  12246789999999976656899999999999999999999983 5799999999999999999


Q ss_pred             eEEEEEECC
Q psy16330         92 IGEKRLNTS  100 (101)
Q Consensus        92 iG~~~~~l~  100 (101)
                      ||.+.++++
T Consensus        80 iG~~~i~l~   88 (121)
T cd08401          80 IGKVAIKKE   88 (121)
T ss_pred             EEEEEEEHH
Confidence            999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.83  E-value=3.4e-19  Score=104.96  Aligned_cols=88  Identities=23%  Similarity=0.281  Sum_probs=73.8

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEE
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFR   79 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~   79 (101)
                      ..++|.|+|.+| +|+.   .+..+.+||||++.+.    +..+++|++++++.||.|+|.|.|...     ....|.|+
T Consensus        25 ~~g~L~V~Vi~A~nL~~---~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          25 STGELHVWVKEAKNLPA---LKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             CCceEEEEEEeeeCCCC---CCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            558999999999 6877   3456789999999863    223589999999999999999999753     34589999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||++.++++++||++.+++.
T Consensus       102 V~d~d~~~~d~~lG~v~i~l~  122 (162)
T cd04020         102 VWDHDKLSSNDFLGGVRLGLG  122 (162)
T ss_pred             EEeCCCCCCCceEEEEEEeCC
Confidence            999999988999999999875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.82  E-value=5.5e-19  Score=102.29  Aligned_cols=84  Identities=29%  Similarity=0.460  Sum_probs=73.6

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~   89 (101)
                      +.|.|+|.+| +|+..   +. +.+|||+.+.+++. +++|++++++.+|.|+|.|.|.+. +...+.|++||++.++.|
T Consensus         2 G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~-~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~d   76 (145)
T cd04038           2 GLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQ-KVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKD   76 (145)
T ss_pred             eEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCE-EEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCC
Confidence            5689999999 68652   33 77899999999876 599999999999999999999987 677899999999999999


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.+++.
T Consensus        77 d~iG~a~i~l~   87 (145)
T cd04038          77 DSMGEAEIDLE   87 (145)
T ss_pred             CEEEEEEEEHH
Confidence            99999999864

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.82  E-value=3.2e-19  Score=99.07  Aligned_cols=83  Identities=24%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             EEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECCcCceeeeeecCCCCCee-ceEEEEEeCC----CCEEEEEEEeCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKW-NEEFTVLVSP----YSIILFRLLDHRTF   86 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w-~e~~~~~~~~----~~~l~~~v~~~~~~   86 (101)
                      |.|+|.+| +|+.+   + ..+.+|||+++.+++. +++|++++++.+|.| +|.|.|.+..    ...|.|+|||++..
T Consensus         1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~-~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~   76 (110)
T cd08688           1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGST-TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY   76 (110)
T ss_pred             CEEEEEEEECCCcc---ccCCCCCCceEEEEECCe-eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence            57889999 68763   3 3477899999999874 699999999999999 9999999872    36899999999999


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      +++++||++.+++.
T Consensus        77 ~~~~~iG~~~~~l~   90 (110)
T cd08688          77 SANDAIGKVYIDLN   90 (110)
T ss_pred             CCCCceEEEEEeHH
Confidence            89999999999874

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.82  E-value=4.4e-19  Score=100.00  Aligned_cols=83  Identities=29%  Similarity=0.376  Sum_probs=72.3

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCe
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCT   91 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~   91 (101)
                      |.|+|..| +|++   .+..+.+||||.+.+++....+|++++++.+|.|+|.|.|.+. ....|.|.+|+.+.+++|++
T Consensus         2 l~v~vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPA---KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcC---CCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCE
Confidence            78888888 6876   3556789999999998765579999999999999999999987 45799999999999999999


Q ss_pred             eEEEEEEC
Q psy16330         92 IGEKRLNT   99 (101)
Q Consensus        92 iG~~~~~l   99 (101)
                      ||++.+++
T Consensus        79 iG~~~~~~   86 (121)
T cd04054          79 IGKVSLTR   86 (121)
T ss_pred             EEEEEEcH
Confidence            99999875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=4.7e-19  Score=100.08  Aligned_cols=84  Identities=20%  Similarity=0.288  Sum_probs=72.0

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~   89 (101)
                      +|.|++.+| +|+.   .+..+.+|||+.+.+++. ..+|++++++.+|.|+|+|.|.+.  ....|.|++||++..+.+
T Consensus         1 ~L~v~vi~a~~L~~---~d~~~~~DPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~   76 (123)
T cd04025           1 RLRCHVLEARDLAP---KDRNGTSDPFVRVFYNGQ-TLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKN   76 (123)
T ss_pred             CEEEEEEEeeCCCC---CCCCCCcCceEEEEECCE-EEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            588999998 6876   344567899999998766 489999999999999999999987  356899999999998889


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.+++.
T Consensus        77 ~~iG~~~~~l~   87 (123)
T cd04025          77 DFLGKVVFSIQ   87 (123)
T ss_pred             cEeEEEEEEHH
Confidence            99999999864

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.82  E-value=6.6e-19  Score=100.34  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCC-CCeeceEEEEEeC---CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTY-QPKWNEEFTVLVS---PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~-~P~w~e~~~~~~~---~~   73 (101)
                      +...|.+..++|.|.|..| +|+++   +..+..||||++++-  +  ..+++|++.+++. +|.|||+|.|+++   .+
T Consensus         5 ~sL~Y~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~   81 (135)
T cd08692           5 LGTCFQAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG   81 (135)
T ss_pred             EEeeecCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence            4457999999999999999 78873   344556999999762  2  2358999999985 6999999999998   23


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..+.+++||++..+++++||++.++.+
T Consensus        82 v~l~v~v~d~~~~~~n~~IG~v~lG~~  108 (135)
T cd08692          82 IQFLIKLYSRSSVRRKHFLGQVWISSD  108 (135)
T ss_pred             eEEEEEEEeCCCCcCCceEEEEEECCc
Confidence            478899999998889999999998763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=6.2e-19  Score=98.60  Aligned_cols=83  Identities=19%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~   90 (101)
                      +.|.|..| +|+.   .+..+.+|||+.+.+++. +++|++++++.+|.|+|.|.|.+.  ....|.|++||++..++++
T Consensus         2 ~~V~v~~a~~L~~---~~~~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           2 VTIVLVEGKNLPP---MDDNGLSDPYVKFRLGNE-KYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             EEEEEEEEECCCC---CCCCCCCCcEEEEEECCE-eEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            67888888 6876   344578899999999776 589999999999999999999887  3579999999999988999


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.++++
T Consensus        78 ~iG~~~~~l~   87 (116)
T cd08376          78 FIGRCEIDLS   87 (116)
T ss_pred             eEEEEEEeHH
Confidence            9999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=3.8e-19  Score=100.98  Aligned_cols=84  Identities=26%  Similarity=0.353  Sum_probs=71.3

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEEEeCCCC
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTF   86 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v~~~~~~   86 (101)
                      +|.|+|.+| +|+.   .+..+.+||||++.+++. +++|++++++.||.|+|.|.|.+..     ...|.|+||+.+.+
T Consensus         1 ~L~V~vi~A~~L~~---~d~~g~~dpyv~v~~~~~-~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022           1 KLVVEVVDAQDLMP---KDGQGSSSAYVELDFDGQ-KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CeEEEEEEeeCCCC---CCCCCCcCcEEEEEECCE-EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence            478999999 6766   345577999999998876 4899999999999999999999862     35799999999887


Q ss_pred             C-CCCeeEEEEEECC
Q psy16330         87 R-RDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~-~~~~iG~~~~~l~  100 (101)
                      + .+++||++.++++
T Consensus        77 ~~~d~~lG~v~i~l~   91 (127)
T cd04022          77 GRRRSFLGRVRISGT   91 (127)
T ss_pred             cCCCCeeeEEEEcHH
Confidence            6 7899999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.82  E-value=5e-19  Score=99.68  Aligned_cols=86  Identities=27%  Similarity=0.394  Sum_probs=73.7

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~   89 (101)
                      +.|.|+|..| +|++   .+..+.+|||+.+.+++...++|++++++.+|.|+|.+.|.+. +...|.|++|+.+..+++
T Consensus         1 g~L~V~Vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKN---LEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCC---ccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCC
Confidence            3578889888 6776   3456789999999997755689999999999999999988886 557999999999999899


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.+++.
T Consensus        78 ~~IG~~~~~l~   88 (120)
T cd04045          78 RSLGSVEINVS   88 (120)
T ss_pred             CeeeEEEEeHH
Confidence            99999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.81  E-value=8.6e-19  Score=98.30  Aligned_cols=84  Identities=24%  Similarity=0.325  Sum_probs=70.9

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeCC--CCEEEEEEEeCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR   87 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~   87 (101)
                      +.|.|+|.+| +|+.   .+..+.+|||+.+.+++. +++|+++.+ +.||.|+|.|.|.+..  ...|.|+|||++..+
T Consensus         1 g~L~V~v~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~   76 (118)
T cd08681           1 GTLVVVVLKARNLPN---KRKLDKQDPYCVLRIGGV-TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK   76 (118)
T ss_pred             CEEEEEEEEccCCCC---CCcCCCCCceEEEEECCC-ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            4689999999 6876   355678999999999875 588988754 7999999999999873  568999999998776


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                       +++||++.+++.
T Consensus        77 -~~~iG~~~~~l~   88 (118)
T cd08681          77 -PDLIGDTEVDLS   88 (118)
T ss_pred             -CcceEEEEEecH
Confidence             889999999875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.81  E-value=4.8e-19  Score=99.60  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             cccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC---CCCEEEE
Q psy16330          7 YFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILF   78 (101)
Q Consensus         7 y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~   78 (101)
                      |....+.|.|+|.+| +|+..   + .+.+||||++++..    ..+++|++++++.+|.|||+|.|.+.   ....|.|
T Consensus         7 ~~~~~~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v   82 (119)
T cd08685           7 IEGQNRKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLV   82 (119)
T ss_pred             EEEcCCEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEE
Confidence            344678999999999 68763   3 57889999998742    22468999999999999999999986   2347889


Q ss_pred             EEEeCCCCC-CCCeeEEEEEECC
Q psy16330         79 RLLDHRTFR-RDCTIGEKRLNTS  100 (101)
Q Consensus        79 ~v~~~~~~~-~~~~iG~~~~~l~  100 (101)
                      +||+.+..+ ++++||.+.+++.
T Consensus        83 ~V~~~~~~~~~~~~lG~~~i~l~  105 (119)
T cd08685          83 TVWNKLSKSRDSGLLGCMSFGVK  105 (119)
T ss_pred             EEECCCCCcCCCEEEEEEEecHH
Confidence            999998765 4689999999875

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=7.7e-19  Score=98.70  Aligned_cols=83  Identities=27%  Similarity=0.476  Sum_probs=69.7

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR   88 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~   88 (101)
                      |.|+|.+| +|++   .+..+.+||||++.+.+  ..+++|++++++.||.|+|+|.|.+..  ...|.|++||++.. +
T Consensus         2 L~V~vi~a~~L~~---~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~   77 (119)
T cd04036           2 LTVRVLRATNITK---GDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-M   77 (119)
T ss_pred             eEEEEEEeeCCCc---cCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-C
Confidence            67888898 6876   34457899999999853  335899999999999999999998872  45799999999988 8


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      +++||++.++++
T Consensus        78 ~~~iG~~~~~l~   89 (119)
T cd04036          78 DDHLGTVLFDVS   89 (119)
T ss_pred             CcccEEEEEEHH
Confidence            899999999874

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.81  E-value=7.5e-19  Score=100.99  Aligned_cols=93  Identities=20%  Similarity=0.296  Sum_probs=78.4

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +.-.|.+...+|.|.|..| +|+..   + .+.+||||++.+...    .+++|++.+++.||.|||.|.|.++    ..
T Consensus         6 ~sl~y~~~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~   81 (137)
T cd08409           6 ISLTYNPTLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT   81 (137)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence            4557999999999999999 78763   4 667899999986421    2478999999999999999999997    34


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      ..|.|+||+.+..+++++||++.++.
T Consensus        82 ~~L~~~V~~~~~~~~~~~lG~v~ig~  107 (137)
T cd08409          82 ASLSLSVMQSGGVRKSKLLGRVVLGP  107 (137)
T ss_pred             cEEEEEEEeCCCCCCcceEEEEEECC
Confidence            68999999999888999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=1e-18  Score=99.08  Aligned_cols=82  Identities=26%  Similarity=0.269  Sum_probs=69.9

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~   90 (101)
                      |.|+|.+| +|+.     ..+.+||||.+.++. ..+++|++++++.+|.|+|.|.|.+. ....|.|+|||.+..++++
T Consensus         1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~   75 (126)
T cd08678           1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSK   75 (126)
T ss_pred             CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCc
Confidence            46888888 6754     346899999999874 23589999999999999999999997 4678999999999988899


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.+++.
T Consensus        76 ~lG~~~i~l~   85 (126)
T cd08678          76 FLGLAIVPFD   85 (126)
T ss_pred             eEEEEEEeHH
Confidence            9999999874

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.80  E-value=1.9e-18  Score=98.03  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~   89 (101)
                      ..|+|+|.+| +|+.   .+..+.+|||+.+.+++. .++|++++++.+|.|+|.|.|... ....|.|+|||++.. .|
T Consensus         3 ~~~~V~v~~A~~L~~---~d~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d   77 (126)
T cd04046           3 VVTQVHVHSAEGLSK---QDSGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CD   77 (126)
T ss_pred             EEEEEEEEeCcCCCC---CCCCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CC
Confidence            5688999999 6766   355688999999998877 489999999999999999999876 667899999999877 47


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||.+.+++.
T Consensus        78 ~~lG~~~~~l~   88 (126)
T cd04046          78 EFLGQATLSAD   88 (126)
T ss_pred             CceEEEEEecc
Confidence            89999999875

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=1.8e-18  Score=97.43  Aligned_cols=81  Identities=25%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      ++.|.|+|.+| +|+.   .   +..|||+++.+++. +.+|++.+++ ||.|+|.|.|.+. ....|.|+|||++.+ .
T Consensus         1 m~~L~V~Vv~Ar~L~~---~---~~~dPYV~Ik~g~~-k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~   71 (127)
T cd08394           1 MSLLCVLVKKAKLDGA---P---DKFNTYVTLKVQNV-KSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-W   71 (127)
T ss_pred             CceEEEEEEEeeCCCC---C---CCCCCeEEEEECCE-EeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-C
Confidence            35799999999 4643   2   24589999999876 5889998874 9999999999997 556799999999865 8


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      |++||++.++|+
T Consensus        72 DD~lG~v~i~L~   83 (127)
T cd08394          72 DTLVGTVWIPLS   83 (127)
T ss_pred             CCceEEEEEEhH
Confidence            999999999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.80  E-value=2.8e-18  Score=97.13  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=71.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcC-ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~-~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~   89 (101)
                      +.|.|.+| +|+.   .+..+.+|||+++.+++.. ..+|++++++.+|.|+|.|.|.+.  ....|.|+|||.+..+++
T Consensus         2 lrV~Vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d   78 (124)
T cd04037           2 VRVYVVRARNLQP---KDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD   78 (124)
T ss_pred             EEEEEEECcCCCC---CCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            67888888 6876   3556789999999987653 368888999999999999999875  456899999999999899


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.+++.
T Consensus        79 d~iG~~~i~l~   89 (124)
T cd04037          79 DLIGETVIDLE   89 (124)
T ss_pred             ceeEEEEEeec
Confidence            99999999885

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.80  E-value=1.1e-18  Score=101.56  Aligned_cols=87  Identities=24%  Similarity=0.336  Sum_probs=71.5

Q ss_pred             eEEEEEEee-EeCCCCCC-----------CCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEE
Q psy16330         13 QLLQLVECA-HLRRGGQG-----------GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIIL   77 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~-----------~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~   77 (101)
                      .|.|+|.+| +|+.+...           ...+.+||||++.+++.. .+|++++++.||.|||+|.|.+.   ....|.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~-~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK-VKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe-eecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            378999999 68874111           112368999999998874 79999999999999999999864   356999


Q ss_pred             EEEEeCCCCCCCCeeEEEEEECC
Q psy16330         78 FRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        78 ~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |++||++..++|++||++.++++
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~  102 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLS  102 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHH
Confidence            99999999989999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=3.3e-18  Score=95.99  Aligned_cols=85  Identities=19%  Similarity=0.180  Sum_probs=73.0

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRD   89 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~~~~~   89 (101)
                      +.|.|+|..| +|+.   .+..+.+|||+.+++++. ..+|++++++.+|.|+|+|.|.+.. ...+.|++||++..+++
T Consensus         1 g~l~v~v~~a~~L~~---~~~~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAA---ADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCC---CCCCCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCC
Confidence            4688999999 6876   344577899999998766 4899999999999999999999873 67899999999988889


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.+++.
T Consensus        77 ~~iG~~~~~l~   87 (119)
T cd08377          77 EFLGKVAIPLL   87 (119)
T ss_pred             ceeeEEEEEHH
Confidence            99999999864

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.80  E-value=2.7e-18  Score=98.02  Aligned_cols=95  Identities=25%  Similarity=0.353  Sum_probs=80.3

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +.-.|.+..++|.|+|.+| +|+.   .+..+.+||||++.+...    .+++|++++++.+|.|+|+|.|.+..    .
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~   81 (134)
T cd00276           5 LSLSYLPTAERLTVVVLKARNLPP---SDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE   81 (134)
T ss_pred             EEEEeeCCCCEEEEEEEEeeCCCC---ccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence            4567888899999999999 6876   344577899999987532    24799999999999999999999872    4


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+||+.+..+++++||++.++++
T Consensus        82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~  108 (134)
T cd00276          82 VSLVITVVDKDSVGRNEVIGQVVLGPD  108 (134)
T ss_pred             cEEEEEEEecCCCCCCceeEEEEECCC
Confidence            689999999998888999999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.80  E-value=3e-18  Score=97.88  Aligned_cols=84  Identities=27%  Similarity=0.468  Sum_probs=71.3

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc------CceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRT   85 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~   85 (101)
                      |.|+|.+| +|+.   .+..+.+|||+.+.+.+.      ...+|++++++.+|.|+++|.|.+.+ ...|.|++||.+.
T Consensus         2 L~v~Vi~a~~L~~---~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~   78 (133)
T cd04033           2 LRVKVLAGIDLAK---KDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR   78 (133)
T ss_pred             EEEEEEEeECCCc---ccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence            68889999 6876   345578999999988643      24789999999999999999999874 6789999999999


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      .+++++||++.++++
T Consensus        79 ~~~~~~iG~~~i~l~   93 (133)
T cd04033          79 LTRDDFLGQVEVPLN   93 (133)
T ss_pred             CCCCCeeEEEEEEHH
Confidence            989999999999864

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=2.2e-18  Score=97.76  Aligned_cols=85  Identities=25%  Similarity=0.239  Sum_probs=73.0

Q ss_pred             ceEEEEEEee-EeCCCCCCCC--CCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGG--LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTF   86 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~--~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~   86 (101)
                      +.|.|+|.+| +|+.   .+.  .+.+||||.+.+++. +++|++++++.+|.|++.|.|.+.  ....|.|++||++..
T Consensus         1 g~l~v~v~~a~~L~~---~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~   76 (128)
T cd04024           1 GVLRVHVVEAKDLAA---KDRSGKGKSDPYAILSVGAQ-RFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF   76 (128)
T ss_pred             CEEEEEEEEeeCCCc---ccCCCCCCcCCeEEEEECCE-EEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC
Confidence            4688999998 6876   344  578999999998766 589999999999999999999887  467999999999988


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      +.+++||++.+++.
T Consensus        77 ~~~~~lG~~~i~l~   90 (128)
T cd04024          77 AGKDYLGEFDIALE   90 (128)
T ss_pred             CCCCcceEEEEEHH
Confidence            88999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.79  E-value=3.2e-18  Score=96.57  Aligned_cols=87  Identities=24%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      +.|.|+|.+| +|+..  ....+.+||||.+.+++ ...++|+++.++.+|.|+|.+.|.+. ....|.|++||.+..+.
T Consensus         2 g~l~v~v~~a~~L~~~--~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~   79 (124)
T cd04044           2 GVLAVTIKSARGLKGS--DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK   79 (124)
T ss_pred             eEEEEEEEcccCCCcc--cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence            5789999999 67742  11235689999999987 45699999999999999999999887 47799999999998888


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      +++||.+.+++.
T Consensus        80 d~~iG~~~~~l~   91 (124)
T cd04044          80 DKLIGTAEFDLS   91 (124)
T ss_pred             CceeEEEEEEHH
Confidence            999999999874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.79  E-value=2.1e-18  Score=100.15  Aligned_cols=83  Identities=24%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----------------
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----------------   71 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----------------   71 (101)
                      +|.|+|.+| +|+.     ..|.+||||++.+.+.    .+++|++++++.+|.|+|.|.|.+.                
T Consensus         1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~   75 (148)
T cd04010           1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED   75 (148)
T ss_pred             CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence            478999998 6754     3467899999998642    3579999999999999999999983                


Q ss_pred             -CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         72 -PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        72 -~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                       ....|.|.||+.+..++++|||++.+++.
T Consensus        76 ~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~  105 (148)
T cd04010          76 AEKLELRVDLWHASMGGGDVFLGEVRIPLR  105 (148)
T ss_pred             ccEEEEEEEEEcCCCCCCCceeEEEEEecc
Confidence             12478999999998889999999999986

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.79  E-value=3.6e-18  Score=100.26  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             cceEEEEEEee-EeCCCCCC---------------------------CCCCCCCcEEEEEECCcCceeeeeecCCCCCee
Q psy16330         11 VLQLLQLVECA-HLRRGGQG---------------------------GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKW   62 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~---------------------------~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w   62 (101)
                      .+.|.|+|.+| +|+++...                           ...|.+|||+.+.+++....+|++++++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            46789999999 68774210                           123668999999998765579999999999999


Q ss_pred             ceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         63 NEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        63 ~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||+|.|.+. ....|.|.+||++.++ +++||++.++++
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~  123 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVE  123 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhH
Confidence            999999886 5568999999998875 579999999875

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=2.8e-18  Score=99.93  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~   89 (101)
                      |.|+|..| +|+.   .+..|.+||||++.+++. +.+|++..+ +.+|.|||.|.|.+.  ....+.|++|+.+..+++
T Consensus         2 L~V~Vi~A~~L~~---~d~~g~sDPYV~v~l~~~-~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           2 LRVTVIEAQDLVP---SDKNRVPEVFVKAQLGNQ-VLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             EEEEEEEeECCCC---CCCCCCCCeEEEEEECCE-EeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            78899999 6876   355688999999999886 589999877 699999999999986  346899999999988889


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      ++||++.++|+
T Consensus        78 d~lG~v~i~L~   88 (150)
T cd04019          78 EPLGRAVIPLN   88 (150)
T ss_pred             CeEEEEEEEHH
Confidence            99999999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.79  E-value=4.3e-18  Score=97.25  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             cceEEEEEEee-EeCCCCCCC-------CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEe
Q psy16330         11 VLQLLQLVECA-HLRRGGQGG-------GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLD   82 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~-------~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~   82 (101)
                      .+.|.|+|..| +|+......       ..+.+||||.+.+++....+|++++++.+|.|||+|.|.+.....+.|.+|+
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d   82 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH   82 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence            46789999999 676531100       1256899999999876557999999999999999999999877899999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      .+..+.+++||++.++|+
T Consensus        83 ~~~~~~~~~iG~~~i~l~  100 (132)
T cd04014          83 DAAIGPDDFVANCTISFE  100 (132)
T ss_pred             CCCCCCCceEEEEEEEhH
Confidence            998888999999999875

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.79  E-value=4.5e-18  Score=94.56  Aligned_cols=84  Identities=30%  Similarity=0.284  Sum_probs=71.8

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-C-----CCEEEEEEEe
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P-----YSIILFRLLD   82 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~-----~~~l~~~v~~   82 (101)
                      ..+.|.|+|.+| +|+       .+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+. +     ...|.|+|||
T Consensus         2 ~~~~l~V~v~~a~~L~-------~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d   73 (111)
T cd04011           2 QDFQVRVRVIEARQLV-------GGNIDPVVKVEVGGQ-KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD   73 (111)
T ss_pred             CcEEEEEEEEEcccCC-------CCCCCCEEEEEECCE-eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence            456789999999 565       256899999999876 489999999999999999999874 1     4689999999


Q ss_pred             CCCCCCCCeeEEEEEECCC
Q psy16330         83 HRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~~  101 (101)
                      .+.++++++||++.++++.
T Consensus        74 ~~~~~~~~~iG~~~i~l~~   92 (111)
T cd04011          74 SRSLRSDTLIGSFKLDVGT   92 (111)
T ss_pred             CcccccCCccEEEEECCcc
Confidence            9998889999999999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.79  E-value=9.6e-18  Score=94.70  Aligned_cols=95  Identities=21%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEE-eC----
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VS----   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~-~~----   71 (101)
                      .+.-.|.+..+.|.|+|.+| +|++   .+..+.+|||+++.+.+    ...++|++++++.+|.|++.|.|. +.    
T Consensus         5 ~~~l~y~~~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~   81 (123)
T cd04035           5 EFTLLYDPANSALHCTIIRAKGLKA---MDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI   81 (123)
T ss_pred             EEEEEEeCCCCEEEEEEEEeeCCCC---CCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence            45568999999999999999 6876   34457789999998631    235899999999999999999986 33    


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ....+.|++||.+.. .+++||++.++++
T Consensus        82 ~~~~l~~~v~d~~~~-~~~~iG~~~i~l~  109 (123)
T cd04035          82 QRKTLRLLVLDEDRF-GNDFLGETRIPLK  109 (123)
T ss_pred             CCCEEEEEEEEcCCc-CCeeEEEEEEEcc
Confidence            246899999999988 8899999999886

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=3.8e-18  Score=93.99  Aligned_cols=80  Identities=29%  Similarity=0.476  Sum_probs=68.7

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~   90 (101)
                      |.|+|.+| +|+.   .+..+.+||||++.+++. .++|++++++.+|.|+|.|.|.+.  ....|.|+||+.+.   ++
T Consensus         2 L~V~v~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           2 LFVYLDSAKNLPL---AKSTKEPSPYVELTVGKT-TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             EEEEEeeecCCCC---cccCCCCCcEEEEEECCE-EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            67899999 6876   344578999999999885 589999999999999999999998  35689999999875   78


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.++|.
T Consensus        75 ~iG~~~i~l~   84 (105)
T cd04050          75 SLGSLTLPLS   84 (105)
T ss_pred             ccEEEEEEHH
Confidence            9999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.78  E-value=1e-17  Score=94.87  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc--CceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCC
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR   87 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~   87 (101)
                      .+.|+|.+| +|+.   .+..+..|||+.+...+.  ..++|++++++.+|.|+|+|.|.+..  ...|.|+||+++..+
T Consensus         2 ~~~V~v~~a~~L~~---~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~   78 (126)
T cd04043           2 LFTIRIVRAENLKA---DSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG   78 (126)
T ss_pred             EEEEEEEEeECCCC---CCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence            578889999 6876   345578899999987543  34799999999999999999999873  568999999999888


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                      ++++||++.++|+
T Consensus        79 ~~~~iG~~~i~l~   91 (126)
T cd04043          79 KHDLCGRASLKLD   91 (126)
T ss_pred             CCceEEEEEEecC
Confidence            8999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.78  E-value=3.3e-18  Score=96.26  Aligned_cols=84  Identities=23%  Similarity=0.347  Sum_probs=68.3

Q ss_pred             EEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcC------ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330         14 LLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKN------PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT   85 (101)
Q Consensus        14 l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~------~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~   85 (101)
                      +.+.+.+.+|++   .+..+.+|||+++++.+..      .++|++++++.+|.|+|.+.|.+.  ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~---~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~   79 (120)
T cd04048           3 VELSISCRNLLD---KDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDS   79 (120)
T ss_pred             EEEEEEccCCCC---CCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecC
Confidence            445555557776   3556889999999886542      489999999999999999998764  55689999999997


Q ss_pred             ----CCCCCeeEEEEEECC
Q psy16330         86 ----FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ----~~~~~~iG~~~~~l~  100 (101)
                          .+++++||++.++++
T Consensus        80 ~~~~~~~~d~iG~~~i~l~   98 (120)
T cd04048          80 KSKDLSDHDFLGEAECTLG   98 (120)
T ss_pred             CcCCCCCCcEEEEEEEEHH
Confidence                788999999999874

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.78  E-value=7.9e-18  Score=93.76  Aligned_cols=79  Identities=25%  Similarity=0.397  Sum_probs=66.1

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeC-----
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-----   83 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~-----   83 (101)
                      |.|+|..| +|+        +..||||.++++.    ..+++|++++++.+|.|+|+|.+.+.....|.+.+||+     
T Consensus         1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~   72 (118)
T cd08686           1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKV   72 (118)
T ss_pred             CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccc
Confidence            56888888 453        3489999998863    23589999999999999999999998778999999998     


Q ss_pred             --CCCCCCCeeEEEEEECC
Q psy16330         84 --RTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        84 --~~~~~~~~iG~~~~~l~  100 (101)
                        +..+.|+++|.+.+.|.
T Consensus        73 ~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          73 KLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             cccccCcccEEEEEEEEEC
Confidence              45678999999988774

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=7.8e-18  Score=95.63  Aligned_cols=85  Identities=22%  Similarity=0.349  Sum_probs=71.0

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC---
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF---   86 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~---   86 (101)
                      ++|.|+|.+| +|+.   .+..+.+|||+.+.+++. ..+|++++++.+|.|+|.|.|.+. +...|.|+|||++..   
T Consensus         1 ~~L~V~vi~a~~L~~---~d~~g~~DPyv~v~~~~~-~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~   76 (127)
T cd04027           1 AKISITVVCAQGLIA---KDKTGTSDPYVTVQVGKT-KKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKS   76 (127)
T ss_pred             CeEEEEEEECcCCcC---CCCCCCcCcEEEEEECCE-eeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccc
Confidence            3688999999 6876   355578899999998765 589999999999999999999886 556899999998853   


Q ss_pred             --------CCCCeeEEEEEECC
Q psy16330         87 --------RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 --------~~~~~iG~~~~~l~  100 (101)
                              +.+++||++.+++.
T Consensus        77 ~~~~~~~~~~~~~iG~~~i~l~   98 (127)
T cd04027          77 RLKQKFTRESDDFLGQTIIEVR   98 (127)
T ss_pred             ccceeccccCCCcceEEEEEhH
Confidence                    46889999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.78  E-value=4.9e-18  Score=94.82  Aligned_cols=84  Identities=25%  Similarity=0.391  Sum_probs=71.2

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~   90 (101)
                      |.|.|.+| +|+.   .+..+.+|||+.+.+++...++|+++.++.+|.|+|++.|.+.  ....+.|++|+++..++++
T Consensus         1 l~v~vi~a~~L~~---~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~   77 (115)
T cd04040           1 LTVDVISAENLPS---ADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDD   77 (115)
T ss_pred             CEEEEEeeeCCCC---CCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCC
Confidence            46788888 6776   3445778999999997665689999999999999999999987  3578999999999888899


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.+++.
T Consensus        78 ~iG~~~~~l~   87 (115)
T cd04040          78 LLGSAYIDLS   87 (115)
T ss_pred             ceEEEEEEHH
Confidence            9999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.78  E-value=9.5e-18  Score=94.84  Aligned_cols=85  Identities=28%  Similarity=0.469  Sum_probs=72.1

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-C----CCEEEEEEEeCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-P----YSIILFRLLDHR   84 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~----~~~l~~~v~~~~   84 (101)
                      +.|.|+|.+| +|++   .+..+.+|||+.+.+++. .++|++.++ +.+|.|++.|.|.+. +    ...|.|+|||.+
T Consensus         1 g~L~V~V~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   76 (124)
T cd04049           1 GTLEVLLISAKGLQD---TDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD   76 (124)
T ss_pred             CeEEEEEEecCCCCC---CCCCCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence            4688999999 6876   345578999999998766 478888875 899999999999987 3    468999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      .++.+++||++.+++.
T Consensus        77 ~~~~d~~iG~~~i~l~   92 (124)
T cd04049          77 NFSDDDFIGEATIHLK   92 (124)
T ss_pred             cCCCCCeEEEEEEEhH
Confidence            9888999999999875

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=6.6e-18  Score=95.23  Aligned_cols=78  Identities=22%  Similarity=0.303  Sum_probs=67.9

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~   90 (101)
                      |.|+|.+| +|+.   .    .+|||+++.+++. +.+|++++++.||.|+|+|.|.+.  ....|.++|||.+.. .++
T Consensus         2 L~V~Vi~a~~L~~---~----~~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~   72 (121)
T cd08378           2 LYVRVVKARGLPA---N----SNDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD   72 (121)
T ss_pred             EEEEEEEecCCCc---c----cCCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence            78899999 6765   2    5799999999875 589999999999999999999986  467899999999877 788


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      +||++.++++
T Consensus        73 ~lG~~~i~l~   82 (121)
T cd08378          73 FLGGVCFDLS   82 (121)
T ss_pred             eeeeEEEEhH
Confidence            9999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG0696|consensus

Probab=99.77  E-value=5.2e-19  Score=115.75  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEE
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLL   81 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~   81 (101)
                      ....|+|+|..| +|.+   ++.+|.+|||+++.+-    +..+++|++++.++||+|||+|+|.+.   .+..|.|+||
T Consensus       178 ~~~~l~v~i~ea~NLiP---MDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvW  254 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIP---MDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVW  254 (683)
T ss_pred             cCceEEEEehhhccccc---cCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEe
Confidence            456788888888 7777   4788999999999862    345689999999999999999999997   4679999999


Q ss_pred             eCCCCCCCCeeEEEEEECC
Q psy16330         82 DHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        82 ~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||..++++|+|+.++.++
T Consensus       255 DWDrTsRNDFMGslSFgis  273 (683)
T KOG0696|consen  255 DWDRTSRNDFMGSLSFGIS  273 (683)
T ss_pred             cccccccccccceecccHH
Confidence            9999999999999888654

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.77  E-value=6.8e-18  Score=95.53  Aligned_cols=84  Identities=21%  Similarity=0.257  Sum_probs=71.5

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-C-----CCEEEEEEEeCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-P-----YSIILFRLLDHRT   85 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~-----~~~l~~~v~~~~~   85 (101)
                      |.|+|..| +|+.   .+..+.+|||+.+.+++..+++|++.. ++.+|.|+|.|.|.+. +     ...|.|++||++.
T Consensus         2 L~V~V~sA~~L~~---~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           2 LEITIISAEDLKN---VNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             EEEEEEEcccCCC---CCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            78899999 6876   355678999999999874468999886 4899999999999987 3     4799999999998


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      .+.+++||++.+++.
T Consensus        79 ~~~~~~lG~~~i~l~   93 (125)
T cd04051          79 SLGDKLIGEVRVPLK   93 (125)
T ss_pred             CCCCCcEEEEEEEHH
Confidence            888999999999874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.77  E-value=2.2e-17  Score=94.69  Aligned_cols=82  Identities=18%  Similarity=0.303  Sum_probs=69.2

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-----------CCCEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------PYSIILFR   79 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-----------~~~~l~~~   79 (101)
                      ++|+|.|..| +|+.   .+..+.+|||+++.+++. +++|++++++.||.|+|.+.|...           ....|.++
T Consensus         1 ~~l~v~V~~a~~L~~---~d~~g~~dpyv~v~~~~~-~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           1 FQLRAYIYQARDLLA---ADKSGLSDPFARVSFLNQ-SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             CEEEEEEEEeecCcC---CCCCCCCCCEEEEEECCe-eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            4789999999 6876   355678999999998766 589999999999999999988742           12478999


Q ss_pred             EEeCCCCCCCCeeEEEEE
Q psy16330         80 LLDHRTFRRDCTIGEKRL   97 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~   97 (101)
                      |||.+..++|++||++.+
T Consensus        77 V~d~d~~~~d~~iG~~~i   94 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVA   94 (135)
T ss_pred             EEeCcCCCCCccceEEEe
Confidence            999999989999999986

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=2.2e-17  Score=93.68  Aligned_cols=82  Identities=24%  Similarity=0.267  Sum_probs=68.1

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEEeCCCCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHRTFRR   88 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~~~~~~   88 (101)
                      ..|.|.|.+| +|+..      +.+||||.+.+++....+|++. ++.+|.|||.|.|... +. ..+.|.+||++..++
T Consensus         4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            4689999999 68652      3579999999987655788874 5899999999999865 32 578999999999999


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      +++||.+.++|+
T Consensus        77 d~~iG~v~i~l~   88 (126)
T cd08400          77 DSEIAEVTVQLS   88 (126)
T ss_pred             CCeEEEEEEEHh
Confidence            999999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.76  E-value=2.2e-17  Score=92.81  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=70.8

Q ss_pred             ceEEEEEEee-EeCCCCCCC---CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGG---GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT   85 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~---~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~   85 (101)
                      +.|.|+|.+| +|+......   ..+.+||||.+++++. .++|++++++.+|.|+|.|.|.+.  ....|.|++||.+.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ-TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE-eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            3588999999 687631100   1256899999999875 599999999999999999999886  36799999999998


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      . ++++||.+.++++
T Consensus        80 ~-~~~~iG~~~i~l~   93 (121)
T cd08391          80 D-KDDFLGRLSIDLG   93 (121)
T ss_pred             C-CCCcEEEEEEEHH
Confidence            8 8899999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.75  E-value=3.9e-17  Score=93.11  Aligned_cols=91  Identities=23%  Similarity=0.272  Sum_probs=74.8

Q ss_pred             cccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC---CCEE
Q psy16330          5 QDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSII   76 (101)
Q Consensus         5 ~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~---~~~l   76 (101)
                      -.|..  +.|.|+|.+| +|+.   .+..+.+|||+.+.+.+    ...++|++++++.+|.|+++|.|.+..   ...|
T Consensus         8 ~~~~~--~~l~v~i~~a~nL~~---~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l   82 (131)
T cd04026           8 ISVKD--NKLTVEVREAKNLIP---MDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRL   82 (131)
T ss_pred             EEECC--CEEEEEEEEeeCCCC---cCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEE
Confidence            35555  7799999999 6876   34456789999998753    235899999999999999999999872   4689


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         77 LFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        77 ~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|++|+.+..+.+++||++.++++
T Consensus        83 ~v~v~d~~~~~~~~~iG~~~~~l~  106 (131)
T cd04026          83 SIEVWDWDRTTRNDFMGSLSFGVS  106 (131)
T ss_pred             EEEEEECCCCCCcceeEEEEEeHH
Confidence            999999998888999999999864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.75  E-value=5.4e-17  Score=94.67  Aligned_cols=84  Identities=18%  Similarity=0.303  Sum_probs=65.7

Q ss_pred             EEEEEEee-E--eCCCCCCCCCCCCCcEEEEEE----CCcCceeeeeecCCCCCeeceEEEEEeCC----------CCEE
Q psy16330         14 LLQLVECA-H--LRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----------YSII   76 (101)
Q Consensus        14 l~v~i~~a-~--l~~~~~~~~~~~~dpy~~v~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~----------~~~l   76 (101)
                      +.++|..+ +  ++.   ....+..||||++++    .+..+.+|++++++.||+|||+|.|.+..          ...|
T Consensus         4 ~el~i~~~~~~~l~~---~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L   80 (155)
T cd08690           4 IELTIVRCIGIPLPS---GWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL   80 (155)
T ss_pred             eEEEEEEeeccccCC---CcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence            34555555 3  555   233467899999986    33446899999999999999999999862          3479


Q ss_pred             EEEEEeCCCC-CCCCeeEEEEEECC
Q psy16330         77 LFRLLDHRTF-RRDCTIGEKRLNTS  100 (101)
Q Consensus        77 ~~~v~~~~~~-~~~~~iG~~~~~l~  100 (101)
                      .+++|+.+.+ ++|++||++.++|+
T Consensus        81 ~~~V~d~~~f~~~D~~iG~~~i~L~  105 (155)
T cd08690          81 KFEVYHKGGFLRSDKLLGTAQVKLE  105 (155)
T ss_pred             EEEEEeCCCcccCCCeeEEEEEEcc
Confidence            9999999886 57999999999986

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=4.4e-17  Score=95.02  Aligned_cols=88  Identities=24%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             ccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----------------------------CceeeeeecC
Q psy16330          6 DYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----------------------------NPKTTRVVKN   56 (101)
Q Consensus         6 ~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----------------------------~~~~T~~~~~   56 (101)
                      .+.+..+.|.|+|.+| +|+.   .+..|.+||||++.+...                            ..++|+++.+
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~   98 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLA---KDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ   98 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcc---cCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC
Confidence            4567789999999999 6776   355688999999987421                            2378999999


Q ss_pred             CCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         57 TYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        57 ~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +.+|.|+|.|.|.+.  ....|.|+|||++    +++||++.++++
T Consensus        99 tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~  140 (153)
T cd08676          99 TLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK  140 (153)
T ss_pred             CCCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHH
Confidence            999999999999987  3578999999987    789999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>KOG1028|consensus

Probab=99.74  E-value=5.5e-17  Score=107.51  Aligned_cols=96  Identities=26%  Similarity=0.290  Sum_probs=83.1

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      .+..+|......|.|+|..| +|+..   +..|.+|||+++++.  ...+.+|++.+++++|.|+|+|.|.+.    ...
T Consensus       157 ~fsl~Yd~~~~~L~V~V~qa~~Lp~~---d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~  233 (421)
T KOG1028|consen  157 QFSLQYDFELNLLTVRVIQAHDLPAK---DRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNR  233 (421)
T ss_pred             EEEEEecccCCEEEEEEEEecCCCcc---cCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccC
Confidence            46778999999999999999 68873   433578999999975  334689999999999999999999976    567


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.++||++|+++++++||++.++|.
T Consensus       234 ~L~l~V~~~drfsr~~~iGev~~~l~  259 (421)
T KOG1028|consen  234 VLHLSVYDFDRFSRHDFIGEVILPLG  259 (421)
T ss_pred             EEEEEEEecCCcccccEEEEEEecCc
Confidence            99999999999999999999999864

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=5.5e-17  Score=93.27  Aligned_cols=83  Identities=23%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---cCceeeeeecCCCCCeeceEEEEEeCC-----------------
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSP-----------------   72 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~-----------------   72 (101)
                      |.|.|.+| +|+.   . ..+.+|||+.+.+..   ...++|++++++.+|.|+|.|.|.+..                 
T Consensus         1 L~V~Vi~A~~L~~---~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~   76 (137)
T cd08675           1 LSVRVLECRDLAL---K-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE   76 (137)
T ss_pred             CEEEEEEccCCCc---c-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence            46788888 6766   3 457899999999873   335899999999999999999998762                 


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|++||.+..+++++||++.+++.
T Consensus        77 ~~~l~i~V~d~~~~~~~~~IG~~~i~l~  104 (137)
T cd08675          77 KSELRVELWHASMVSGDDFLGEVRIPLQ  104 (137)
T ss_pred             ccEEEEEEEcCCcCcCCcEEEEEEEehh
Confidence            2489999999998888999999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.73  E-value=9e-17  Score=89.10  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             EEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCc-----CceeeeeecCCCCCeeceEEEEEeC------CCCEEEEEEEe
Q psy16330         14 LLQLVECAHLRRGGQGGGLLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVS------PYSIILFRLLD   82 (101)
Q Consensus        14 l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~------~~~~l~~~v~~   82 (101)
                      +.+.+.+.+|+.   .+..+.+|||+++++.+.     ..++|++++++.+|.|+ .|.+...      ....|.|+|||
T Consensus         3 ~~~~i~a~~L~~---~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d   78 (110)
T cd04047           3 VELQFSGKKLDK---KDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD   78 (110)
T ss_pred             EEEEEEeCCCCC---CCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence            444555557876   355678999999987433     24899999999999999 6666543      25699999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++..++|++||++.++++
T Consensus        79 ~d~~~~d~~iG~~~~~l~   96 (110)
T cd04047          79 YDSSGKHDLIGEFETTLD   96 (110)
T ss_pred             eCCCCCCcEEEEEEEEHH
Confidence            999999999999999874

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.73  E-value=1.9e-16  Score=90.94  Aligned_cols=83  Identities=23%  Similarity=0.426  Sum_probs=67.5

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-c-----------CceeeeeecCCCCCee-ceEEEEEeCCCCEEEEE
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-K-----------NPKTTRVVKNTYQPKW-NEEFTVLVSPYSIILFR   79 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~-----------~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~l~~~   79 (101)
                      ..|.+.+| +|+.    +.+|.+|||+++.+.. .           ++++|++++++.||.| +|.|.|.+.....|.++
T Consensus         3 ~~~~~~~A~~L~~----~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~   78 (137)
T cd08691           3 FSLSGLQARNLKK----GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIE   78 (137)
T ss_pred             EEEEEEEeCCCCC----ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEE
Confidence            46777888 6764    4568899999998742 1           2589999999999999 99999998877799999


Q ss_pred             EEeCCCCCC---CCeeEEEEEECC
Q psy16330         80 LLDHRTFRR---DCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~---~~~iG~~~~~l~  100 (101)
                      |||++..++   +++||++.++++
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~  102 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQ  102 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHH
Confidence            999765333   689999999874

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.70  E-value=3.9e-16  Score=88.58  Aligned_cols=69  Identities=23%  Similarity=0.281  Sum_probs=61.2

Q ss_pred             CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         31 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        31 ~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+.    ....|.|+||+++..+++++||++.++++
T Consensus        11 ~~g~~Dpyv~v~~~~~-~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~   83 (127)
T cd08373          11 LKGKGDRIAKVTFRGV-KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQ   83 (127)
T ss_pred             cCCCCCCEEEEEECCE-eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhh
Confidence            3467899999999876 489999999999999999999985    35789999999999888999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.67  E-value=9.8e-16  Score=80.72  Aligned_cols=80  Identities=33%  Similarity=0.526  Sum_probs=67.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCc--eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNP--KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~--~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~   88 (101)
                      |.|+|.+| +|+.   .+..+..+||+.+.+.+...  ++|++..++.+|.|++.+.|.+.  ....|.|+||+.+..++
T Consensus         1 L~v~I~~a~~L~~---~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~   77 (85)
T PF00168_consen    1 LTVTIHSARNLPS---KDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGK   77 (85)
T ss_dssp             EEEEEEEEESSSS---SSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSS
T ss_pred             CEEEEEEEECCCC---cccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCC
Confidence            67899999 5766   34456789999999876443  99999999999999999999976  45579999999999988


Q ss_pred             CCeeEEEE
Q psy16330         89 DCTIGEKR   96 (101)
Q Consensus        89 ~~~iG~~~   96 (101)
                      +++||++.
T Consensus        78 ~~~iG~~~   85 (85)
T PF00168_consen   78 DELIGEVK   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEC
Confidence            99999973

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.67  E-value=6.7e-16  Score=85.84  Aligned_cols=69  Identities=32%  Similarity=0.397  Sum_probs=60.3

Q ss_pred             CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         31 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        31 ~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.+||||.+.+++...++|++++++.+|.|+|.|.|.+.  ....|.|.+|+.+.+ ++++||.+.++|+
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~   79 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLN   79 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence            34778999999998765589999999999999999999887  356799999999988 8999999999874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.67  E-value=2.7e-15  Score=84.99  Aligned_cols=85  Identities=27%  Similarity=0.373  Sum_probs=68.5

Q ss_pred             ceEEEEEEee-EeCCCCCCC--CCCCCCcEEEEEECC-----cCceeeeeecCCC-CCeeceEEEEEeC-C-CCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGG--GLLKPNPYIELYVDY-----KNPKTTRVVKNTY-QPKWNEEFTVLVS-P-YSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~--~~~~~dpy~~v~~~~-----~~~~~T~~~~~~~-~P~w~e~~~~~~~-~-~~~l~~~v   80 (101)
                      .+|+|+|.+| +|+..   +  ..+..|||+.+++.+     ..+++|+++.++. +|.|+|+|.|.+. + ...|.++|
T Consensus         2 ~~l~v~vi~a~~L~~~---~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKP---KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCC---CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEE
Confidence            4689999999 68763   3  357789999998732     2358999988765 9999999999876 3 34799999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |+.+.. ++++||++.++++
T Consensus        79 ~d~~~~-~~~~iG~~~~~l~   97 (128)
T cd00275          79 YDEDSG-DDDFLGQACLPLD   97 (128)
T ss_pred             EeCCCC-CCcEeEEEEEEhH
Confidence            999988 8899999999874

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.61  E-value=1.2e-14  Score=81.20  Aligned_cols=78  Identities=28%  Similarity=0.395  Sum_probs=62.3

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC----CCEEEEEEEeCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRR   88 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~l~~~v~~~~~~~~   88 (101)
                      |.|+|..| +|+.    .  +.+|||+.+.+++...++|+++++ .+|.|+|+|.|.+..    ...|.+.+|+.+....
T Consensus         2 L~v~vi~a~~l~~----~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPS----K--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCc----C--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence            67888898 5765    2  678999999998765589999988 999999999999873    2467888898876666


Q ss_pred             CCeeEEEEEE
Q psy16330         89 DCTIGEKRLN   98 (101)
Q Consensus        89 ~~~iG~~~~~   98 (101)
                      +.++|.+.+.
T Consensus        75 ~~~~g~v~l~   84 (117)
T cd08383          75 DIVIGKVALS   84 (117)
T ss_pred             eeEEEEEEec
Confidence            6677776654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PLN03008 Phospholipase D delta

Probab=99.61  E-value=3.7e-15  Score=104.07  Aligned_cols=67  Identities=27%  Similarity=0.629  Sum_probs=60.0

Q ss_pred             CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         33 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        33 ~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +.+|||+.|.+++.++.||++++++.||.|||+|.|.+. +...|.|+|||.+.++ +++||++.++++
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~  142 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVR  142 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHH
Confidence            467999999998776679999999999999999999997 5779999999999996 579999999875

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.60  E-value=4e-15  Score=111.21  Aligned_cols=84  Identities=20%  Similarity=0.381  Sum_probs=71.2

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-C--CCEEEEEEEeCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P--YSIILFRLLDHRTF   86 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~--~~~l~~~v~~~~~~   86 (101)
                      .+.|.|+|.+| +|.     ..++.+||||.+.+++..+.+|++++++.||.|+|+|+|.+. +  ...+.++|||+|.+
T Consensus      1979 ~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             CcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            47789999999 564     346889999999999765689999999999999999998776 3  35799999999999


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      ++| .+|.+++++.
T Consensus      2054 ~kd-~~G~~~i~l~ 2066 (2102)
T PLN03200       2054 GKS-SLGKVTIQID 2066 (2102)
T ss_pred             CCC-CCceEEEEHH
Confidence            554 9999999874

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.58  E-value=4.3e-14  Score=81.78  Aligned_cols=83  Identities=23%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCC-C
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT-F   86 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~-~   86 (101)
                      ....|.|.|.+| +|+.        ..+|||.+.+++....||+++.++.+|.|+|.|.|... +...+.|.+|..+. .
T Consensus         9 ~~~sL~v~V~EAk~Lp~--------~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~   80 (146)
T cd04013           9 TENSLKLWIIEAKGLPP--------KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK   80 (146)
T ss_pred             EEEEEEEEEEEccCCCC--------cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence            346788999999 5765        23799999999987789999999999999999999765 45789999986543 2


Q ss_pred             C---CCCeeEEEEEECC
Q psy16330         87 R---RDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~---~~~~iG~~~~~l~  100 (101)
                      +   .+++||.+.++++
T Consensus        81 ~~~~~~~~IG~V~Ip~~   97 (146)
T cd04013          81 KKKDKSQLIGTVNIPVT   97 (146)
T ss_pred             ccccCCcEEEEEEEEHH
Confidence            2   5789999999874

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>KOG1028|consensus

Probab=99.56  E-value=6.2e-14  Score=93.15  Aligned_cols=94  Identities=26%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +...|.+..++|.|.|..| +|+.   .+..+..||||++.+-  .  ..+++|.+.+++.||+|||+|.|.++    ..
T Consensus       289 ~sL~Y~p~~g~ltv~v~kar~L~~---~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~  365 (421)
T KOG1028|consen  289 LSLCYLPTAGRLTVVVIKARNLKS---MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE  365 (421)
T ss_pred             EEEEeecCCCeEEEEEEEecCCCc---ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence            3457999999999999999 7877   3566778999999752  2  23588999999999999999999887    34


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      ..+.++||+++.++++++||++.+..
T Consensus       366 ~~l~l~V~d~d~~~~~~~iG~~~lG~  391 (421)
T KOG1028|consen  366 VSLELTVWDHDTLGSNDLIGRCILGS  391 (421)
T ss_pred             eEEEEEEEEcccccccceeeEEEecC
Confidence            58999999999999999999987754

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.54  E-value=4.2e-13  Score=72.23  Aligned_cols=84  Identities=33%  Similarity=0.506  Sum_probs=68.8

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc--CceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR   88 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~   88 (101)
                      +.+.|.++ ++...   ...+..+||+.+.+...  ...+|+.+.++.+|.|++.+.|.+..  ...|.|++|+.+..+.
T Consensus         2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~   78 (101)
T smart00239        2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGR   78 (101)
T ss_pred             eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccC
Confidence            56788888 56552   23356899999998754  46899999999999999999999984  7899999999988777


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      +.++|.+.+++.
T Consensus        79 ~~~~G~~~~~l~   90 (101)
T smart00239       79 DDFIGQVTIPLS   90 (101)
T ss_pred             CceeEEEEEEHH
Confidence            899999998863

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.53  E-value=4e-13  Score=76.62  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             EEEEEEee-EeCCCCCCCCCC--CCCcEEEEEECC--cCceeeeeecCCCC--CeeceEEEEEeCC--------------
Q psy16330         14 LLQLVECA-HLRRGGQGGGLL--KPNPYIELYVDY--KNPKTTRVVKNTYQ--PKWNEEFTVLVSP--------------   72 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~--~~dpy~~v~~~~--~~~~~T~~~~~~~~--P~w~e~~~~~~~~--------------   72 (101)
                      |.|.|-.+ +++... ....|  .+||||++.+.+  ..+++|.++.++++  |.||+.|.|.+..              
T Consensus         2 LRViIw~~~~v~~~~-~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDD-TNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccc-cccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            67777777 543210 12234  489999998865  34699999999999  9999999987641              


Q ss_pred             -----------CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 -----------YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 -----------~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                                 ...|.+++||.|.+++|++||+++++|+
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~  119 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS  119 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh
Confidence                       2478999999999999999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.48  E-value=2.1e-12  Score=69.20  Aligned_cols=84  Identities=31%  Similarity=0.388  Sum_probs=68.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~~~   90 (101)
                      |.|.|.++ ++..   .......+||+.+.+.+...++|.+..++.+|.|++.+.+.+..  ...+.+++|+.+..+.+.
T Consensus         1 l~v~i~~~~~l~~---~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~   77 (102)
T cd00030           1 LRVTVIEARNLPA---KDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDD   77 (102)
T ss_pred             CEEEEEeeeCCCC---cCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCc
Confidence            35777888 4544   23345689999999887445899999999999999999999875  679999999998887788


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      ++|++.+++.
T Consensus        78 ~ig~~~~~l~   87 (102)
T cd00030          78 FLGEVEIPLS   87 (102)
T ss_pred             eeEEEEEeHH
Confidence            9999998864

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011|consensus

Probab=99.44  E-value=2.1e-13  Score=93.41  Aligned_cols=85  Identities=24%  Similarity=0.359  Sum_probs=71.0

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC--
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF--   86 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~--   86 (101)
                      ...+.+++.|| .|..   .+..|.+|||+.+.++.. +.||+++...+||+|+|.|+|.+. ....|++.|||.|+.  
T Consensus       294 sakitltvlcaqgl~a---kdktg~sdpyvt~qv~kt-krrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKT-KRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             ceeeEEeeeeccccee---cccCCCCCCcEEEeeccc-chhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence            45678899999 5654   356689999999998877 599999999999999999999998 566999999998753  


Q ss_pred             ---------CCCCeeEEEEEEC
Q psy16330         87 ---------RRDCTIGEKRLNT   99 (101)
Q Consensus        87 ---------~~~~~iG~~~~~l   99 (101)
                               .+|+|+|+..+.+
T Consensus       370 sklrqkl~resddflgqtviev  391 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEV  391 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEE
Confidence                     4588999987764

>PLN02223 phosphoinositide phospholipase C

Probab=99.37  E-value=1.1e-11  Score=83.86  Aligned_cols=89  Identities=26%  Similarity=0.353  Sum_probs=67.2

Q ss_pred             ceEEEEEEee-EeCCCCC-C-CCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CCC-EEEEEEEe
Q psy16330         12 LQLLQLVECA-HLRRGGQ-G-GGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PYS-IILFRLLD   82 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~-~-~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~-~l~~~v~~   82 (101)
                      ..|.|+|..+ .++.... . +.....||||+|.+.|    ..+++|.+..++.||.|+|+|.|.+. ++. -|.|.|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            4688888888 4532110 1 1234579999998754    22467877778999999999999987 444 68999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      .|..+.++|+|++.+|++
T Consensus       489 ~D~~~~ddfiGQ~~LPv~  506 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVS  506 (537)
T ss_pred             cCCCCCCcEEEEEecchH
Confidence            998888999999999874

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.36  E-value=2.8e-12  Score=91.76  Aligned_cols=87  Identities=24%  Similarity=0.394  Sum_probs=75.1

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFR   87 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~   87 (101)
                      ++.|++.+..+ +|+.   .+..+.+||||.+.+.++..++|+++++++||.|||++...+.  ....+.+.++|++...
T Consensus      1039 sG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038        1039 SGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred             cCcEEEEEeccCCCcc---cccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence            56788888888 6876   3556779999999998887799999999999999999999887  3457889999999988


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                      +++.+|.+.++|+
T Consensus      1116 knd~lg~~~idL~ 1128 (1227)
T COG5038        1116 KNDLLGTAEIDLS 1128 (1227)
T ss_pred             CccccccccccHh
Confidence            9999999999875

>KOG2059|consensus

Probab=99.32  E-value=6.8e-12  Score=86.14  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=74.0

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      ...|.++|.+| +|+.   .+..|..||||.|.++.+...||.++.+++.|-|+|++.|.++ .-..|.|=|||.| +++
T Consensus         4 ~~sl~vki~E~knL~~---~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~   79 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPS---YGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKR   79 (800)
T ss_pred             ccceeEEEeecccCCC---CCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccc
Confidence            35689999999 7877   4666889999999999887899999999999999999999998 4568999999999 999


Q ss_pred             CCeeEEEEEE
Q psy16330         89 DCTIGEKRLN   98 (101)
Q Consensus        89 ~~~iG~~~~~   98 (101)
                      |+.||.+.+.
T Consensus        80 D~~IGKvai~   89 (800)
T KOG2059|consen   80 DDIIGKVAIK   89 (800)
T ss_pred             ccccceeeee
Confidence            9999997764

>PLN02952 phosphoinositide phospholipase C

Probab=99.30  E-value=6.1e-11  Score=81.44  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             cceEEEEEEee-EeCCCCC---CCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQ---GGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRL   80 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~---~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v   80 (101)
                      ...|.|+|..+ .++....   .+.....|||++|.+-+    ..+.+|+++.++.+|.|+++|.|.+. ++ .-+.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            35788888888 4432110   12223469999998743    23579999999999999999999887 33 4688999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||+|..+.++|+|++.+|++
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~  568 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVS  568 (599)
T ss_pred             EecCCCCCCCeEEEEEcchh
Confidence            99998888999999999875

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.29  E-value=2.8e-11  Score=86.77  Aligned_cols=92  Identities=25%  Similarity=0.369  Sum_probs=76.0

Q ss_pred             ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCC
Q psy16330          8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT   85 (101)
Q Consensus         8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~   85 (101)
                      -...+.+.++|..| ++...+. ...+..|||+.+...+....||++.+++.||+|||++.+.+. -...|.+++||.+.
T Consensus       432 ~~aIGVv~vkI~sa~~lk~~d~-~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         432 GTAIGVVEVKIKSAEGLKKSDS-TINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             CCeeEEEEEEEeeccCcccccc-cccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            45678899999999 5765310 134789999999876655679999999999999999877776 67899999999999


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      ..+|+.+|.+.++|.
T Consensus       511 ~~sd~vvG~~~l~L~  525 (1227)
T COG5038         511 FKSDKVVGSTQLDLA  525 (1227)
T ss_pred             cCCcceeeeEEechH
Confidence            999999999999875

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.27  E-value=9.5e-11  Score=80.44  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=67.4

Q ss_pred             ceEEEEEEee-EeCCCCCC---CCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQG---GGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLL   81 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~---~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~   81 (101)
                      ..|.|+|..+ +++.....   +.....||||+|.+-+    ..+.+|++..++.+|.|+|+|.|.+. ++ .-|+|.|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            5788998888 44311001   2224579999998743    22478898889999999999999887 43 47899999


Q ss_pred             eCCCCCCCCeeEEEEEECC
Q psy16330         82 DHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        82 ~~~~~~~~~~iG~~~~~l~  100 (101)
                      |.|..+.++|+|+..+|++
T Consensus       549 d~d~~~~ddfiGQ~~lPv~  567 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVS  567 (598)
T ss_pred             ECCCCCCCCEEEEEEcchH
Confidence            9998888999999999874

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.27  E-value=4.3e-11  Score=65.21  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCCCCee
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTI   92 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~~~~i   92 (101)
                      |.|+|.++ ++.---.....+.++||+.+++++..+.||++   +.||.|+|.|.|.+.....+.+.+||.... ..--|
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~nEiel~VyDk~~~-~~~Pi   76 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKNNEEEVIVYDKGGD-QPVPV   76 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCCcEEEEEEEeCCCC-eecce
Confidence            46777777 45331001134678999999998876788887   479999999999998888999999998643 33466


Q ss_pred             EEEEEEC
Q psy16330         93 GEKRLNT   99 (101)
Q Consensus        93 G~~~~~l   99 (101)
                      |..-+.+
T Consensus        77 ~llW~~~   83 (109)
T cd08689          77 GLLWLRL   83 (109)
T ss_pred             eeehhhH
Confidence            6655544

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0169|consensus

Probab=99.25  E-value=7.1e-11  Score=81.82  Aligned_cols=88  Identities=24%  Similarity=0.328  Sum_probs=67.5

Q ss_pred             eEEEEEEeeE-eCCCCCCCCC-CCCCcEEEEEECCc----Cceeeeee-cCCCCCeeceEEEEEeC-CC-CEEEEEEEeC
Q psy16330         13 QLLQLVECAH-LRRGGQGGGL-LKPNPYIELYVDYK----NPKTTRVV-KNTYQPKWNEEFTVLVS-PY-SIILFRLLDH   83 (101)
Q Consensus        13 ~l~v~i~~a~-l~~~~~~~~~-~~~dpy~~v~~~~~----~~~~T~~~-~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~   83 (101)
                      .|.|+|..+. .+.......+ ...|||+.|++.|.    ...+|+++ .++.+|.|+|+|.|.+. |+ .-|+|.|+|.
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999883 3332112222 35799999987542    35899954 57999999999999998 54 4789999999


Q ss_pred             CCCCCCCeeEEEEEECC
Q psy16330         84 RTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        84 ~~~~~~~~iG~~~~~l~  100 (101)
                      |..++|+|+|+..+|++
T Consensus       697 d~~~~ddF~GQ~tlP~~  713 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVS  713 (746)
T ss_pred             CCCCcccccceeeccHH
Confidence            99999999999999874

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.23  E-value=2.1e-10  Score=78.67  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             ceEEEEEEee-E--eCCC-CCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEE
Q psy16330         12 LQLLQLVECA-H--LRRG-GQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLL   81 (101)
Q Consensus        12 ~~l~v~i~~a-~--l~~~-~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~   81 (101)
                      ..|.|+|..+ +  |+.. ...+.....|||++|.+.+    ..+.+|+++.++.+|.|+|.|.|.+. ++ .-|.|.|+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~  531 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH  531 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence            4688888887 3  2221 0011224579999998743    23579999999899999999999876 43 47889999


Q ss_pred             eCCCCCCCCeeEEEEEECC
Q psy16330         82 DHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        82 ~~~~~~~~~~iG~~~~~l~  100 (101)
                      |.|..+.++|+|++.+|++
T Consensus       532 d~D~~~~ddfigq~~lPv~  550 (581)
T PLN02222        532 EYDMSEKDDFGGQTCLPVW  550 (581)
T ss_pred             ECCCCCCCcEEEEEEcchh
Confidence            9998888999999999875

>KOG1264|consensus

Probab=99.18  E-value=2.7e-10  Score=79.91  Aligned_cols=85  Identities=26%  Similarity=0.382  Sum_probs=65.8

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-----cCceeeeeecCCCCCeec-eEEEEEeC-C-CCEEEEEEEe
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-----KNPKTTRVVKNTYQPKWN-EEFTVLVS-P-YSIILFRLLD   82 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-----~~~~~T~~~~~~~~P~w~-e~~~~~~~-~-~~~l~~~v~~   82 (101)
                      ..|.|.+..| +|++    .+.+.+.||+.|++-|     ...+.|.+..+++||+|+ +.|+|++. | --.|+|.|++
T Consensus      1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred             eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence            3566778888 6876    2345567999998632     222455566689999999 99999997 3 3478999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.++...|||++.+|+.
T Consensus      1141 eDmfs~~~FiaqA~yPv~ 1158 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVK 1158 (1267)
T ss_pred             ccccCCcceeeeeecchh
Confidence            999999899999999864

>PLN02228 Phosphoinositide phospholipase C

Probab=99.17  E-value=6.1e-10  Score=76.21  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             ceEEEEEEee-EeCCCCCCC---CCCCCCcEEEEEECC----cCceeeeeecCCCCCee-ceEEEEEeC-CC-CEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGG---GLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKW-NEEFTVLVS-PY-SIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~---~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w-~e~~~~~~~-~~-~~l~~~v   80 (101)
                      ..|.|+|..+ .++......   .....||||+|.+.+    ..+++|++++++.+|.| +++|.|.+. ++ .-|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            4688999988 442110011   123479999998643    23479999998999999 999999886 43 4788999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +|.+..+.++|+|++.++++
T Consensus       511 ~D~d~~~~d~figq~~lPv~  530 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLP  530 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchh
Confidence            99998888999999999874

>KOG1328|consensus

Probab=99.10  E-value=4.4e-11  Score=82.87  Aligned_cols=94  Identities=23%  Similarity=0.304  Sum_probs=73.9

Q ss_pred             ecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc------CceeeeeecCCCCCeeceEEEEEeCC----
Q psy16330          4 LQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP----   72 (101)
Q Consensus         4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~----   72 (101)
                      -..|.-...+|.|.|..| .+.+   -+.+|.+||||.|++...      ..++|++++.++||+|+|+|.|.+++    
T Consensus       939 r~~y~~n~q~L~veVlhA~diip---LD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen  939 RAYYNGNAQTLVVEVLHAKDIIP---LDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred             EEEeeccccchhhhhhccccccc---cCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence            345666677788877777 4433   366789999999987532      25899999999999999999999972    


Q ss_pred             --CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 --YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 --~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                        .-.+-|+|.|+|-.+.+||-|++.+.|.
T Consensus      1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg 1045 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELG 1045 (1103)
T ss_pred             cccceEEEEeeccceecccccchHHHHhhC
Confidence              2268899999998888999998776553

>PLN02270 phospholipase D alpha

Probab=99.06  E-value=1.7e-09  Score=76.23  Aligned_cols=89  Identities=22%  Similarity=0.341  Sum_probs=71.6

Q ss_pred             cceEEEEEEee-EeCCCC---------------CCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-C
Q psy16330         11 VLQLLQLVECA-HLRRGG---------------QGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-P   72 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~---------------~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~   72 (101)
                      .+.|.++|.+| +|+++.               .....+.+|||+.|.+++....||+++.+ ..||.|+|.|.+++. .
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            46789999999 687520               00112457999999999988899999988 469999999999887 6


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...+.|+|-|.+.++.. +||.+.+|+.
T Consensus        87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~  113 (808)
T PLN02270         87 ASNIIFTVKDDNPIGAT-LIGRAYIPVE  113 (808)
T ss_pred             cceEEEEEecCCccCce-EEEEEEEEHH
Confidence            78999999998888654 9999999864

>KOG1031|consensus

Probab=98.89  E-value=8e-09  Score=70.85  Aligned_cols=86  Identities=23%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeece-EEEEEeC----CCCEEEEEEEeCCC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNE-EFTVLVS----PYSIILFRLLDHRT   85 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e-~~~~~~~----~~~~l~~~v~~~~~   85 (101)
                      +.|.|+|..+ +||-+  .......|.|+.+.+.+.. ++|.+..+++||.||. .|.|++.    .+..|.+++.|+|.
T Consensus         3 gkl~vki~a~r~lpvm--dkasd~tdafveik~~n~t-~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVM--DKASDLTDAFVEIKFANTT-FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCccc--ccccccchheeEEEecccc-eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            5678889888 68775  2233457999999998885 9999999999999995 4577776    56799999999999


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      .+.++-||.+.+++.
T Consensus        80 ysandaigkv~i~id   94 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDID   94 (1169)
T ss_pred             cccccccceeeeccC
Confidence            999999999998764

>KOG1326|consensus

Probab=98.74  E-value=7.3e-09  Score=73.85  Aligned_cols=84  Identities=21%  Similarity=0.308  Sum_probs=69.4

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcC-ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~-~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~   89 (101)
                      ++|.+.+| +|.+   .+..|.+|||+.+.+++.. .-+...+.++++|+|++-|.+...  ....+.+.||++|..+.|
T Consensus       615 vrVyvv~A~~L~p---~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  615 VRVYVVEAFSLQP---SDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             EEEEEEEeeeccc---cCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            34677888 7877   4677899999999988653 257778889999999998776654  577899999999999999


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      +.||+..++|+
T Consensus       692 ~~iget~iDLE  702 (1105)
T KOG1326|consen  692 EKIGETTIDLE  702 (1105)
T ss_pred             chhhceehhhh
Confidence            99999998875

>KOG1013|consensus

Probab=98.58  E-value=1.8e-07  Score=60.13  Aligned_cols=90  Identities=26%  Similarity=0.372  Sum_probs=69.6

Q ss_pred             cccccccceEEEEEE-eeEeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC----CCE
Q psy16330          5 QDYFSSVLQLLQLVE-CAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSI   75 (101)
Q Consensus         5 ~~y~~~~~~l~v~i~-~a~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~   75 (101)
                      -.|.+....+.+++. |+.|..   .+..+.+|||+...+..    ..+++|.+.+++.+|.|++.+.+.+.+    ...
T Consensus       226 l~~~s~~~~l~vt~iRc~~l~s---sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k  302 (362)
T KOG1013|consen  226 LAYSSTTPGLIVTIIRCSHLAS---SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK  302 (362)
T ss_pred             eccCcCCCceEEEEEEeeeeec---cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence            467777888888655 467766   36668899999998642    235889999999999999999888873    458


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEE
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRL   97 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~   97 (101)
                      +.+.+||.+..+..+++|-...
T Consensus       303 v~lsvgd~~~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  303 VALSVGDYDIGKSNDSIGGSML  324 (362)
T ss_pred             EEEeecccCCCcCccCCCcccc
Confidence            8999999998767777776543

>KOG0905|consensus

Probab=98.49  E-value=1.8e-07  Score=68.21  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=66.3

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEE-eC----CCCEEEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRL   80 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~~~l~~~v   80 (101)
                      .+.|.|.|..+ +|+-   ..+...+||||+.++.    +..+.+|++++++.+|.|||.+... .+    ....|.++|
T Consensus      1523 ~~~LtImV~H~K~L~~---Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLAL---LQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred             CceEEEEhhhhccccc---ccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence            56677777776 3422   1222457999999874    2346899999999999999998766 33    346899999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |..+....+.++|.+.++|.
T Consensus      1600 ls~~~~~en~~lg~v~i~L~ 1619 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLL 1619 (1639)
T ss_pred             ecccceeeeeeeeeeecchh
Confidence            99998888889999998875

>PLN02964 phosphatidylserine decarboxylase

Probab=98.37  E-value=1e-06  Score=61.68  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330         12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~   89 (101)
                      +.+.+++..|.+         ...|+|..+-.-+.+.+||...+++.+|+||+...|.+.  ...-..+.|||.+.++.+
T Consensus        54 ~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n  124 (644)
T PLN02964         54 GIALLTLVGAEM---------KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN  124 (644)
T ss_pred             CeEEEEeehhhh---------ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence            344555666532         224887777544555799999999999999998888876  334569999999999999


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      +++|.++++|+
T Consensus       125 ~lv~~~e~~~t  135 (644)
T PLN02964        125 TLVGYCELDLF  135 (644)
T ss_pred             HhhhheeecHh
Confidence            99999988653

>KOG1013|consensus

Probab=98.35  E-value=4e-08  Score=63.01  Aligned_cols=95  Identities=20%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-----
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-----   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-----   71 (101)
                      ++-..|.+.+..+..++..| .|+.   ++..+..|||++..+..    ..+.+|++..+++||.|++......-     
T Consensus        83 ~~~~~y~~~~~~~~~tl~~a~~lk~---~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~  159 (362)
T KOG1013|consen   83 EFELLYDSESRMLDTTLDRAKGLKP---MDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT  159 (362)
T ss_pred             hhhhhhhhhhhhcceeechhcccch---hhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence            45667899999999999999 5776   46668899999997642    23478999999999999998766542     


Q ss_pred             CCCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         72 PYSIILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      ....+.+.+.+.+.+...+++|+..+++
T Consensus       160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~l  187 (362)
T KOG1013|consen  160 HLKVLRKVVCDNDKKTHNESQGQSRVSL  187 (362)
T ss_pred             hhhhhheeeccCcccccccCcccchhhh
Confidence            2446777888888888889999988654

>PLN02352 phospholipase D epsilon

Probab=98.31  E-value=5.6e-06  Score=58.76  Aligned_cols=83  Identities=18%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             ccceEEEEEEeeE-eCCCCCC-CCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEEeCC
Q psy16330         10 SVLQLLQLVECAH-LRRGGQG-GGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHR   84 (101)
Q Consensus        10 ~~~~l~v~i~~a~-l~~~~~~-~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~~   84 (101)
                      -.+.|.++|..|+ +...+.. ... ...+||+.|.+++....||   .+..||.|+|.|.+++. .. ..+.|+|-|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            3577899999985 3322110 111 1239999999998877888   56669999999999887 33 689999977  


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                         ..++||.+.+|+.
T Consensus        83 ---~~~~ig~~~~p~~   95 (758)
T PLN02352         83 ---KCSILGRFHIQAH   95 (758)
T ss_pred             ---CCeEEEEEEEEHH
Confidence               2569999999864

>KOG2059|consensus

Probab=98.14  E-value=4.4e-06  Score=58.42  Aligned_cols=69  Identities=23%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             CCCCCcEEEEEECCcC---ceeeeeecCCCCCeeceEEEEEeCCC-----------------CEEEEEEEe-CCCCCCCC
Q psy16330         32 LLKPNPYIELYVDYKN---PKTTRVVKNTYQPKWNEEFTVLVSPY-----------------SIILFRLLD-HRTFRRDC   90 (101)
Q Consensus        32 ~~~~dpy~~v~~~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~-----------------~~l~~~v~~-~~~~~~~~   90 (101)
                      .+.+|||+.+...+..   ..+|++.+.+.+|.|+|.+.|.+...                 ..|++++|+ ++....+.
T Consensus       148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~  227 (800)
T KOG2059|consen  148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV  227 (800)
T ss_pred             CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence            4569999999875432   26899999999999999999987521                 268889998 45555689


Q ss_pred             eeEEEEEECC
Q psy16330         91 TIGEKRLNTS  100 (101)
Q Consensus        91 ~iG~~~~~l~  100 (101)
                      |+|++.+++.
T Consensus       228 FlGevrv~v~  237 (800)
T KOG2059|consen  228 FLGEVRVPVD  237 (800)
T ss_pred             hceeEEeehh
Confidence            9999998864

>KOG1327|consensus

Probab=98.10  E-value=1.9e-05  Score=53.97  Aligned_cols=74  Identities=26%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             EeCCCCCCCCCCCCCcEEEEEE--CCc---CceeeeeecCCCCCeeceEEEEEeC------CCCEEEEEEEeCCCCCCCC
Q psy16330         22 HLRRGGQGGGLLKPNPYIELYV--DYK---NPKTTRVVKNTYQPKWNEEFTVLVS------PYSIILFRLLDHRTFRRDC   90 (101)
Q Consensus        22 ~l~~~~~~~~~~~~dpy~~v~~--~~~---~~~~T~~~~~~~~P~w~e~~~~~~~------~~~~l~~~v~~~~~~~~~~   90 (101)
                      +|.+   ++.++.+|||..++-  +..   ..++|.+++++++|.|.+.. +...      +...+.+.+|+++..++++
T Consensus       147 ~ld~---kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~  222 (529)
T KOG1327|consen  147 NLDP---KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHD  222 (529)
T ss_pred             ecCc---ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcC
Confidence            5555   466788999999953  221   24899999999999998532 3321      3568899999999998989


Q ss_pred             eeEEEEEEC
Q psy16330         91 TIGEKRLNT   99 (101)
Q Consensus        91 ~iG~~~~~l   99 (101)
                      +||.+..++
T Consensus       223 ~ig~~~tt~  231 (529)
T KOG1327|consen  223 LIGKFQTTL  231 (529)
T ss_pred             ceeEecccH
Confidence            999988654

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.85  E-value=0.00019  Score=40.88  Aligned_cols=67  Identities=16%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CCCcEEEEEEC---CcCceeeeeecCCCCCeeceEEEEEeC-----------------CCCEEEEEEEeCCCC-------
Q psy16330         34 KPNPYIELYVD---YKNPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTF-------   86 (101)
Q Consensus        34 ~~dpy~~v~~~---~~~~~~T~~~~~~~~P~w~e~~~~~~~-----------------~~~~l~~~v~~~~~~-------   86 (101)
                      ..|+|+.+.+.   +....+|+++.++.-|.|+..+.|.++                 ....+.+++|....-       
T Consensus        32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            36899999753   344589999999999999999988774                 123788999986532       


Q ss_pred             ---CCCCeeEEEEEECC
Q psy16330         87 ---RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ---~~~~~iG~~~~~l~  100 (101)
                         ..|-++|.+.+|+.
T Consensus       112 ~~~~~DilLG~v~IPl~  128 (143)
T cd08683         112 IETSGDILLGTVKIPLR  128 (143)
T ss_pred             cCcCCcEEEEEEEeeHH
Confidence               23558899999864

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011|consensus

Probab=97.76  E-value=0.0002  Score=50.54  Aligned_cols=87  Identities=22%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             ccceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEEC------CcCceeeeeecCCCCCeeceEEEEEeC-----CCCEEE
Q psy16330         10 SVLQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVD------YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIIL   77 (101)
Q Consensus        10 ~~~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~------~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~   77 (101)
                      +...+.|.|..|+ |+=    ...|.--||+.+.+-      ..+++.|+...++-.|-+||+|.|-+.     ....|.
T Consensus      1123 gehkvtvkvvaandlkw----qtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1123 GEHKVTVKVVAANDLKW----QTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred             CcceEEEEEEecccccc----hhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEE
Confidence            3456677888883 543    334556799999752      233577888888999999999999886     233788


Q ss_pred             EEEEeCCCCCCCCeeEEEEEECC
Q psy16330         78 FRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        78 ~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +.|-|+.=...|..+|.+.++|.
T Consensus      1199 ~~VKDYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred             Eeehhheeecccceeeeeeeehh
Confidence            88888775556789999888764

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.61  E-value=5.1e-05  Score=40.39  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             CCcCceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         44 DYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        44 ~~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...-..+|...+.+.+|.|.|+|.|.+.    ++..|.|.++.  ...+.+.||.+.+.+.
T Consensus        32 ~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~   90 (103)
T cd08684          32 PKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLR   90 (103)
T ss_pred             CCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecc
Confidence            3443588989999999999999999886    56688899988  4567889999999875

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1326|consensus

Probab=97.55  E-value=1.9e-05  Score=57.15  Aligned_cols=67  Identities=19%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             CCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEe---C--------CCCEEEEEEEeCCCCCCCCeeEEEEE
Q psy16330         30 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV---S--------PYSIILFRLLDHRTFRRDCTIGEKRL   97 (101)
Q Consensus        30 ~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~---~--------~~~~l~~~v~~~~~~~~~~~iG~~~~   97 (101)
                      +..+.+|||+.+..-++ .+.|.++.++++|.|++...|.-   .        ....+.+++||.+..+.++|+|....
T Consensus       222 dk~~~sdp~a~v~f~~q-s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~  299 (1105)
T KOG1326|consen  222 DKDDESDPDAAVEFCGQ-SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQ  299 (1105)
T ss_pred             CcccCCCchhhhhcccc-cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhccccc
Confidence            33456899999987666 48999999999999999988852   1        12367899999999999999998654

>KOG1328|consensus

Probab=97.40  E-value=0.00012  Score=52.03  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=30.9

Q ss_pred             eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330         49 KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT   85 (101)
Q Consensus        49 ~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~   85 (101)
                      +-|.+.++++||.|+|.|.|.+.  ....+-+.|||+|.
T Consensus       179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDD  217 (1103)
T KOG1328|consen  179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDD  217 (1103)
T ss_pred             hhcccccccCCcchhhheeeehhccccceeeeecccCCc
Confidence            45777888999999999999987  55678899999764

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.34  E-value=0.0023  Score=37.82  Aligned_cols=67  Identities=19%  Similarity=0.248  Sum_probs=47.6

Q ss_pred             CCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         34 KPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        34 ~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..+.|+.+.+  ++..   ...|....-+..+.|||...|.+.     .+..|.|+||+....+....+|.++++|-
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF  105 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF  105 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence            4677887754  3321   235555554667899999999875     35589999999876556679999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG2060|consensus

Probab=97.27  E-value=0.00018  Score=47.37  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEe
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLD   82 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~   82 (101)
                      ...+.+.|.|..| .|...  ...-..++||++|++-.    ..+.+|+..+++..|.+.+...|.-. +..-|.+++|.
T Consensus       266 d~~g~l~vEii~ar~l~~k--~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g  343 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVK--PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG  343 (405)
T ss_pred             cccCceeEEEEeccccccc--CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence            3456788888888 44321  12223689999998632    23578999999999999888888776 56688899985


Q ss_pred             -CCCCCCCCeeEEEEE
Q psy16330         83 -HRTFRRDCTIGEKRL   97 (101)
Q Consensus        83 -~~~~~~~~~iG~~~~   97 (101)
                       ...+-.+.|+|.+++
T Consensus       344 dygRmd~k~fmg~aqi  359 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQI  359 (405)
T ss_pred             cccccchHHHhhHHHH
Confidence             445555667766544

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=97.14  E-value=0.021  Score=34.69  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=39.7

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC-C-CCeeEEEEEEC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-R-DCTIGEKRLNT   99 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~-~-~~~iG~~~~~l   99 (101)
                      .++|-+...+.+|.|+|++.+.++    ...+|.|+++...... . ...+|-+.++|
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            478888998999999999999987    4568999888754321 1 25678887776

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.93  E-value=0.017  Score=33.84  Aligned_cols=85  Identities=12%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v   80 (101)
                      ..+.|++... +...    ......+.|+.+.+  ++..   ...|.....+.++.|+|...|.+.     .+..|.|++
T Consensus         8 ~~~~i~i~~~~~~~~----~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl   83 (156)
T cd08380           8 FNLRIKIHGITNINL----LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI   83 (156)
T ss_pred             CCeEEEEEeeccccc----cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence            3456666665 2221    01123456666643  3321   233333333468999999999764     456899999


Q ss_pred             EeCCCCC--CCCeeEEEEEECC
Q psy16330         81 LDHRTFR--RDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~--~~~~iG~~~~~l~  100 (101)
                      |+.+..+  .+..||.+.++|-
T Consensus        84 ~~~~~~~~~~~~~iG~~~~~lF  105 (156)
T cd08380          84 YAVSEPGSKKEVPLGWVNVPLF  105 (156)
T ss_pred             EEEecCCCCcceEEEEEeEEeE
Confidence            9876543  4579999998874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.91  E-value=0.02  Score=34.28  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v   80 (101)
                      ..+.|++.++ ++.-   .+  ...+.|+.+.+  ++..   ...|....-+..+.|+|.+.|++.     ....|.|++
T Consensus         8 ~~f~i~i~~~~~~~~---~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti   82 (173)
T cd08693           8 EKFSITLHKISNLNA---AE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI   82 (173)
T ss_pred             CCEEEEEEEeccCcc---CC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence            4678888888 4432   01  22456666643  3321   234544444567999999999775     355899999


Q ss_pred             EeCCCCC----------------CCCeeEEEEEECC
Q psy16330         81 LDHRTFR----------------RDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~----------------~~~~iG~~~~~l~  100 (101)
                      |+.....                ....||.+.++|-
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LF  118 (173)
T cd08693          83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVF  118 (173)
T ss_pred             EEecccccccccccccccccccCcceEEEEEeEEEE
Confidence            9864321                2468899888763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.90  E-value=0.022  Score=33.66  Aligned_cols=82  Identities=15%  Similarity=0.187  Sum_probs=51.7

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v   80 (101)
                      ..+.|+|.++ ++.-    .  ...+.|+.+.+  ++..   ...|..+. ..++.|+|.+.|.+.     ....|.|++
T Consensus         8 ~~~~v~i~~~~~~~~----~--~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti   80 (158)
T cd08398           8 SNLRIKILCATYVNV----N--DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSI   80 (158)
T ss_pred             CCeEEEEEeeccCCC----C--CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEE
Confidence            4678888888 4432    1  23467887754  3321   12333333 257999999999875     355899999


Q ss_pred             EeCCCCC----CCCeeEEEEEECC
Q psy16330         81 LDHRTFR----RDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~----~~~~iG~~~~~l~  100 (101)
                      |+.....    ....+|.+.++|-
T Consensus        81 ~~~~~~~~~k~~~~~iG~~ni~LF  104 (158)
T cd08398          81 CSVKGRKGAKEEHCPLAWGNINLF  104 (158)
T ss_pred             EEEecccCCCCceEEEEEEEEEEE
Confidence            9865321    2246899988763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=96.84  E-value=0.007  Score=32.50  Aligned_cols=51  Identities=12%  Similarity=0.049  Sum_probs=37.7

Q ss_pred             CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCC
Q psy16330         33 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHR   84 (101)
Q Consensus        33 ~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~   84 (101)
                      |..+..+.+.+++.....|.-. ...+..|++.|.+++.....|+|.||-.|
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRsRELEI~VywrD   57 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERSRELEIAVYWRD   57 (98)
T ss_pred             cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecccEEEEEEEEec
Confidence            4456777777776544444333 23588999999999998899999998765

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG3837|consensus

Probab=96.82  E-value=0.0025  Score=42.88  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=51.3

Q ss_pred             CCcEEEEEE----CCcCceeeeeecCCCCCeeceEEEEEeCC-------------CCEEEEEEEeCCCC-CCCCeeEEEE
Q psy16330         35 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------------YSIILFRLLDHRTF-RRDCTIGEKR   96 (101)
Q Consensus        35 ~dpy~~v~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-------------~~~l~~~v~~~~~~-~~~~~iG~~~   96 (101)
                      .|-|+.+++    +..++.+|.+++.+.+|.|++.|.+.+..             ...++|++|....+ .+|.++|.+.
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n  467 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN  467 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence            356777753    23346899999999999999999988852             23789999998764 5788999998


Q ss_pred             EECC
Q psy16330         97 LNTS  100 (101)
Q Consensus        97 ~~l~  100 (101)
                      +.+.
T Consensus       468 ikle  471 (523)
T KOG3837|consen  468 IKLE  471 (523)
T ss_pred             eeeh
Confidence            8764

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.74  E-value=0.037  Score=33.36  Aligned_cols=85  Identities=7%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEE--CCcC--ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEe
Q psy16330         12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKN--PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLD   82 (101)
Q Consensus        12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~--~~~~--~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~   82 (101)
                      ..+.|+|.+++.+.   .........|+.+.+  ++..  ..+|.....+.++.|+|.+.|.+.     ....|.|+||+
T Consensus        10 ~~friki~~~~~~~---~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~   86 (178)
T cd08399          10 RKFRVKILGIDIPV---LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCEEEEEEeecccC---cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence            35677777774322   111112234555532  3321  235555555678999999988875     35589999998


Q ss_pred             CCCCC----------------CCCeeEEEEEEC
Q psy16330         83 HRTFR----------------RDCTIGEKRLNT   99 (101)
Q Consensus        83 ~~~~~----------------~~~~iG~~~~~l   99 (101)
                      ....+                .+..||.+.+.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~L  119 (178)
T cd08399          87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLL  119 (178)
T ss_pred             EecCcccccccccccccccccccceEEEEEEEE
Confidence            52111                245777777765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.74  E-value=0.013  Score=35.34  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC-CC--CeeEEEEEECC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-RD--CTIGEKRLNTS  100 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~-~~--~~iG~~~~~l~  100 (101)
                      .+.|.+..++.+|.|+|++.+.++    +...|.|++++...-. ++  ..+|.+.++|-
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~  119 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM  119 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence            367777778899999999999987    3558999999865422 22  68999999874

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.68  E-value=0.062  Score=32.88  Aligned_cols=52  Identities=15%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC-CC---CCeeEEEEEEC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF-RR---DCTIGEKRLNT   99 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~-~~---~~~iG~~~~~l   99 (101)
                      .++|-+.....+|.|+|++.+.++    ...+|.|+++..... .+   ...+|-+.++|
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL  113 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL  113 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence            478888888999999999999987    456899999875422 12   24678877776

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.54  E-value=0.013  Score=33.83  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             eeeeecCC-CCCeeceEEEEEeC-----CCCEEEEEEEeCCCCCCC----CeeEEEEEECC
Q psy16330         50 TTRVVKNT-YQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRD----CTIGEKRLNTS  100 (101)
Q Consensus        50 ~T~~~~~~-~~P~w~e~~~~~~~-----~~~~l~~~v~~~~~~~~~----~~iG~~~~~l~  100 (101)
                      .|....-+ ..+.|+|.+.|.+.     .+..|.|++|........    ..||.+.++|-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF   83 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF   83 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence            55555555 79999999999875     466999999987655444    68999999874

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.53  E-value=0.025  Score=33.77  Aligned_cols=87  Identities=16%  Similarity=0.050  Sum_probs=53.5

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeec----CCCCCeeceEEEEEeC-----CCCE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVK----NTYQPKWNEEFTVLVS-----PYSI   75 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~----~~~~P~w~e~~~~~~~-----~~~~   75 (101)
                      ...+.++|.++ +++..   -.....+.|+.+.+  ++..   ...|+...    -...+.|+|.+.|.+.     .+..
T Consensus         7 ~~~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrear   83 (171)
T cd04012           7 TDLLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESR   83 (171)
T ss_pred             cccEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHE
Confidence            34577888888 45541   11123567777753  3321   12333221    1335779999988775     3568


Q ss_pred             EEEEEEeCCCCC---------CCCeeEEEEEECC
Q psy16330         76 ILFRLLDHRTFR---------RDCTIGEKRLNTS  100 (101)
Q Consensus        76 l~~~v~~~~~~~---------~~~~iG~~~~~l~  100 (101)
                      |.|++|+....+         .+..+|.+.++|-
T Consensus        84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF  117 (171)
T cd04012          84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF  117 (171)
T ss_pred             EEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence            999999865443         3468999988863

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.87  E-value=0.17  Score=33.62  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---------CCCEEEEEEEeC
Q psy16330         14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---------PYSIILFRLLDH   83 (101)
Q Consensus        14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---------~~~~l~~~v~~~   83 (101)
                      +.|.|.++ +.+..      ....-.+...+++.. ..|..+.++..|.|+..+.+++.         ....|++++|..
T Consensus         2 ivl~i~egr~F~~~------~~~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQR------PRHPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCC------CCccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence            34566666 33321      122345556788884 88999999999999999988875         456999999998


Q ss_pred             C-CCCCCCeeEEEEEECC
Q psy16330         84 R-TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        84 ~-~~~~~~~iG~~~~~l~  100 (101)
                      + ..+..+.+|.+-++|.
T Consensus        75 ~~~~~~re~iGyv~LdLR   92 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLR   92 (340)
T ss_pred             cCCCCcceeccEEEEEcc
Confidence            8 5566789999988874

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=95.77  E-value=0.089  Score=31.59  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=37.0

Q ss_pred             eeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC-----CCCCeeEEEEEECC
Q psy16330         51 TRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF-----RRDCTIGEKRLNTS  100 (101)
Q Consensus        51 T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~-----~~~~~iG~~~~~l~  100 (101)
                      +.++....+|.|++++.+.++    +..+|.|++++...-     .....+|-+.++|-
T Consensus        56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~  114 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM  114 (178)
T ss_pred             EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence            334444489999999999987    456999999986522     33568899988874

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=95.76  E-value=0.14  Score=30.53  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CCCcEEEEEECCcCceeeeeecC--CCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         34 KPNPYIELYVDYKNPKTTRVVKN--TYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        34 ~~dpy~~v~~~~~~~~~T~~~~~--~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...-|+++.++++...+|+...-  ...-.|++.|.+.+. -...|.++||.... ..+.+|+++.+++-
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP  104 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVP  104 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCC
Confidence            35678999888876666666554  444567788777776 45689999999876 57789999998863

>KOG1265|consensus

Probab=95.66  E-value=0.049  Score=40.22  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             ceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECC------cCceeeeeec-CCCCCeeceE-EEEEe---CCCCEEEEE
Q psy16330         12 LQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDY------KNPKTTRVVK-NTYQPKWNEE-FTVLV---SPYSIILFR   79 (101)
Q Consensus        12 ~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~------~~~~~T~~~~-~~~~P~w~e~-~~~~~---~~~~~l~~~   79 (101)
                      +.+.|+|..+. |..       .....||.|..-+      .+.+||++.. ++.||.|+|. |.|.-   +.-..|.|.
T Consensus       703 ~t~sV~VISgqFLSd-------rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSD-------RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eeEEEEEEeeeeccc-------cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            45677777774 433       2344799997532      1247888877 5999999964 44432   123478999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +|+..    ..+||+-.+++.
T Consensus       776 vyeEg----gK~ig~RIlpvd  792 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVD  792 (1189)
T ss_pred             eeccC----Cceeeeeccchh
Confidence            99865    458898777764

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.62  E-value=0.19  Score=29.75  Aligned_cols=89  Identities=15%  Similarity=0.023  Sum_probs=55.1

Q ss_pred             ccccceEEEEEEeeEe-CCCCCCCCCCCCCcEEEEEE--CCcCceeeeeecCCCCCeeceEEEEEeCC------------
Q psy16330          8 FSSVLQLLQLVECAHL-RRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP------------   72 (101)
Q Consensus         8 ~~~~~~l~v~i~~a~l-~~~~~~~~~~~~dpy~~v~~--~~~~~~~T~~~~~~~~P~w~e~~~~~~~~------------   72 (101)
                      .+....|++++..++. -..+ ....+..+.-..+.+  .++ .++|+.+..+.+|.|++.|.|++..            
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l-~~~~~~~~s~~~l~l~f~~Q-RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l   82 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHL-QEPEGQVCSTFTLHLHFRGQ-RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL   82 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhh-hccCCCCceEEEEEEEecCc-eEecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence            4556678888877631 1100 000134455555544  455 5999999999999999999999861            


Q ss_pred             ---CCEEEEEEEeCCCCCCCCeeEEEEEE
Q psy16330         73 ---YSIILFRLLDHRTFRRDCTIGEKRLN   98 (101)
Q Consensus        73 ---~~~l~~~v~~~~~~~~~~~iG~~~~~   98 (101)
                         ...+.+.+...+..+...++|+..+.
T Consensus        83 ls~~~pihivli~~d~~~~~~Lv~s~~ld  111 (156)
T PF15627_consen   83 LSISDPIHIVLIRTDPSGETTLVGSHFLD  111 (156)
T ss_pred             hcCCCceEEEEEEecCCCceEeeeeceeh
Confidence               12455666655555555677765553

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=95.57  E-value=0.11  Score=31.43  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC------CCCeeEEEEEEC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR------RDCTIGEKRLNT   99 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~------~~~~iG~~~~~l   99 (101)
                      .+.|.+..++.+|.|.+++.+.++    ...+|.|++++.+.-.      ....+|-+.++|
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL  116 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL  116 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence            478888889999999999999887    4568999998743211      135688888876

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=95.45  E-value=0.15  Score=30.99  Aligned_cols=52  Identities=13%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC--C-------CCCeeEEEEEEC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF--R-------RDCTIGEKRLNT   99 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~--~-------~~~~iG~~~~~l   99 (101)
                      ...|.+..++.+|.|.+++.+.++    +..+|.|++++.+..  .       ....+|-+.++|
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPL  121 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPL  121 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEee
Confidence            478888888999999999999887    456999999986421  1       135688888876

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1452|consensus

Probab=95.18  E-value=0.14  Score=33.77  Aligned_cols=79  Identities=23%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR   87 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~   87 (101)
                      ..+-|.+.+.++ .|+.-  .... -..+.||.++.+.+-+.||.+-.....-.|.|+|..++.....+.+-+|+|+.-.
T Consensus        49 ~tGiL~~H~~~GRGLr~~--p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMT--PQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQR  126 (442)
T ss_pred             ccceEEEEEecccccccC--hhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchh
Confidence            345566666665 34321  1111 2357899998887756777777777777899988887776778888888887655


Q ss_pred             CCC
Q psy16330         88 RDC   90 (101)
Q Consensus        88 ~~~   90 (101)
                      ++.
T Consensus       127 RHK  129 (442)
T KOG1452|consen  127 RHK  129 (442)
T ss_pred             hcc
Confidence            443

>KOG1327|consensus

Probab=93.67  E-value=0.12  Score=36.14  Aligned_cols=52  Identities=17%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC----CCCCCeeEEEEEECC
Q psy16330         49 KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT----FRRDCTIGEKRLNTS  100 (101)
Q Consensus        49 ~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~----~~~~~~iG~~~~~l~  100 (101)
                      .+|.++.+.++|.|.+.+.+...  ..+.+++.+++.+.    ....+|+|+++..+.
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~  100 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLS  100 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehh
Confidence            59999999999999998877665  45689999998664    345689999887654

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=91.14  E-value=1  Score=24.38  Aligned_cols=50  Identities=20%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEeCC
Q psy16330         35 PNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR   84 (101)
Q Consensus        35 ~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~~~   84 (101)
                      .+.|+.+.+  ++..   ...|....-+..+.|+|...|.+.     .+..|.|++|+..
T Consensus        32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            367787754  3321   234544444566899999988775     3558999999854

Outlier of C2 family.

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=90.86  E-value=1.9  Score=24.58  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECCcC--ceeeeeec-CCCCCeeceEEEEEeC----------CCCEE
Q psy16330         11 VLQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDYKN--PKTTRVVK-NTYQPKWNEEFTVLVS----------PYSII   76 (101)
Q Consensus        11 ~~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~~~--~~~T~~~~-~~~~P~w~e~~~~~~~----------~~~~l   76 (101)
                      ..++.+.|.... ++.       .....++...-+...  ...|.... .+..-.|++.+.+.+.          ....+
T Consensus         6 kf~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~   78 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL   78 (143)
T ss_pred             eEEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence            345566676663 322       122344444444332  23444443 3556799998887653          12378


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         77 LFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        77 ~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+.....+....+|.+.++|+
T Consensus        79 ~~~v~~~~~~~~k~~lG~~~inLa  102 (143)
T PF10358_consen   79 KFSVFEVDGSGKKKVLGKVSINLA  102 (143)
T ss_pred             EEEEEEecCCCccceEEEEEEEHH
Confidence            888887643333368999999875

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG0694|consensus

Probab=87.67  E-value=0.21  Score=35.98  Aligned_cols=53  Identities=17%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             CCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCC
Q psy16330         34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTF   86 (101)
Q Consensus        34 ~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~   86 (101)
                      ..+||+.+.+.-.....+.+.+.+..|.|+++|...+.....+.+.++.....
T Consensus        27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~~~~i~v~~~~~~   79 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGGAKNIIVLLKSPD   79 (694)
T ss_pred             hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCCceEEEEEecCCc
Confidence            46889888775433334445667899999999999987788888888876543

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=83.93  E-value=4.4  Score=22.42  Aligned_cols=50  Identities=16%  Similarity=0.107  Sum_probs=26.1

Q ss_pred             eeeeeecCCCCCeeceEEEEEeC---------CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         49 KTTRVVKNTYQPKWNEEFTVLVS---------PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        49 ~~T~~~~~~~~P~w~e~~~~~~~---------~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.++. +.+|.++-+..+.+.         ....+.++++..- ......+|.+++++.
T Consensus        13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~   71 (107)
T PF11618_consen   13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLR   71 (107)
T ss_dssp             EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--S
T ss_pred             eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeech
Confidence            5566665 789999988777775         2458889998754 223568899988864

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2nq3_A	173	Crystal Structure Of The C2 Domain Of Human Itchy H		3e-09
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		7e-04

>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog E3 Ubiquitin Protein Ligase Length = 173

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 35  PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
           P+PY+E+ VD ++ KT +   NT  PKW +  TV+V+P S + FR+  H+T + D  +G 
Sbjct: 57  PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 115
Query: 95  KRLN 98
             L+
Sbjct: 116 AALD 119

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 36  NPYIEL--YVDYKNPK----TTRVVKNTYQPKWNEEFTVLVSPYS-IILFRLLDHRTFRR 88
           +PY++L  YV  +N +     T+ +K T  PKWNEEF   V+P +  +LF + D     R
Sbjct: 43  DPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTR 102
Query: 89  DCTIGE 94
           D  +G+
Sbjct: 103 DDFLGQ 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-20
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-14
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-14
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-12
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-08
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-07
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-10
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-10
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	4e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-09
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-08
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-08
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-08
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-08
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	5e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	6e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-07
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-07
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-07
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-07
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-07
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-07
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-07
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	7e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-07
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-06
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-06
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	8e-06
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-05
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-05
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-05
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	8e-05
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-04
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-04
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-04

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 78.8 bits (194), Expect = 3e-20
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIIL 77
           V  A L+   +      P+PY+E+ VD    K T    NT  PKW +  TV+V+P S + 
Sbjct: 42  VISAKLKENKKNWF--GPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLH 98

Query: 78  FRLLDHRTFRRDCTIGEKRLN 98
           FR+  H+T + D  +G   L+
Sbjct: 99  FRVWSHQTLKSDVLLGTAALD 119

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 63.1 bits (153), Expect = 3e-14
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 8   FSSVLQLLQLVECAHL-------RRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQP 60
           F+  L++ ++ E   L       R      G    +PY+ + VD      T   + T +P
Sbjct: 27  FNGYLRV-RIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKP 85

Query: 61  KWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
            +NEEF   V+    +   +        D  +    L    
Sbjct: 86  TYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQE 126

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 62.2 bits (151), Expect = 4e-14
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 8   FSSVLQLLQLVECAHLR--------RGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQ 59
           F+ +L++ ++ E   L+          G        +PYI L VD      T   + T  
Sbjct: 4   FNGLLKI-KICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62

Query: 60  PKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
           P W++EF   V     I   +        D  +    +    
Sbjct: 63  PAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEE 104

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 34 KPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD 89
           P+P+ ++ VD      +T  VKNT  PKWN+ + + V     I   + +H+   + 
Sbjct: 25 LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKK 81

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 60.2 bits (146), Expect = 2e-12
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           +++   L      G     +PY+++Y+  D K    T+V + T  P +NE F   V    
Sbjct: 26  ILQALDLPAKDSNG---FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE 82

Query: 75  I----ILFRLLDHRTFRRDCTIGEKRL 97
           +    + F + D   F R   IG+  L
Sbjct: 83  LAQRKLHFSVYDFDRFSRHDLIGQVVL 109

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSPY 73
           ++ ++L+     G     +PY++  +  +      + T + KNT  P +NE     V+P 
Sbjct: 159 IKASNLKAMDLTG---FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215

Query: 74  SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
           S+    +   ++D+     +  IG  R+    
Sbjct: 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 247

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           +++ A L     GG     +PY+++++  D K    T+V + T  P +NE+FT  V    
Sbjct: 25  IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81

Query: 75  I----ILFRLLDHRTFRRDCTIGEKRL 97
           +    ++  + D   F +   IGE ++
Sbjct: 82  LAGKTLVMAVYDFDRFSKHDIIGEFKV 108

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSP 72
           ++E  +L++   GG     +PY+++++     +     T + KNT  P +NE F+  V  
Sbjct: 156 ILEAKNLKKMDVGG---LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 212

Query: 73  YSI----ILFRLLDHRTFRRDCTIGEKRL 97
             I    ++  +LD+    ++  IG+  +
Sbjct: 213 EQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           + E   L    +       +PYI++ +  + K+   TRV++ T  P ++E FT    PY+
Sbjct: 28  IKEARGLPAMDEQSM--TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85

Query: 75  II-----LFRLLDHRTFRRDCTIGEKRL 97
            I      F +L    F RD  IGE  +
Sbjct: 86  QIQELALHFTILSFDRFSRDDIIGEVLI 113

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTI 92
            +PY++L    ++ K+         P+WNE F   V    + +  ++ D      D  +
Sbjct: 30 NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89

Query: 93 GE 94
          GE
Sbjct: 90 GE 91

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           +++ A L     GG     +PY+++++  D K    T+V + T  P +NE+FT  V    
Sbjct: 48  IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 104

Query: 75  I----ILFRLLDHRTFRRDCTIGE 94
           +    ++  + D   F +   IGE
Sbjct: 105 LGGKTLVMAVYDFDRFSKHDIIGE 128

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           +++ A L     GG     +PY+++++  D K    T+V + T  P +NE+FT  V    
Sbjct: 40  IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96

Query: 75  I----ILFRLLDHRTFRRDCTIGE 94
           +    ++  + D   F +   IGE
Sbjct: 97  LGGKTLVMAVYDFDRFSKHDIIGE 120

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           +++   L      G     +P++++Y+  D K+   T+V +    P WNE F     PY 
Sbjct: 32  IMKAQELPAKDFSG---TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYE 88

Query: 75  IILFRLL-----DHRTFRRDCTIGE 94
            ++ R+L     D+  F R+  IGE
Sbjct: 89  KVVQRILYLQVLDYDRFSRNDPIGE 113

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 49.0 bits (117), Expect = 7e-09
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 11  VLQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTV 68
           V++   L          Q       NPY+++ +  D KN K T V + T +P + E +T 
Sbjct: 32  VIEARDLPPPISHDGSRQDMAH--SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89

Query: 69  LVSPYSI----ILFRLLDHRTFRRDCTIGE 94
            +         +L  ++D   F R C IG+
Sbjct: 90  EIPFLEAQRRTLLLTVVDFDKFSRHCVIGK 119

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 48.9 bits (117), Expect = 7e-09
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 13/85 (15%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPK-TTRVVKNTYQPKWNEEFTVLVSPY 73
            +E       G        + Y++  V     + +  T + K      W E   + ++  
Sbjct: 32  RLEAVTSNHDG------GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 74  SI----ILFRLLDHRTFRRDCTIGE 94
            +    +   L     F R    GE
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSVAGE 110

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY- 73
           ++    + +G  G  L  P+PY+EL++     + K TR   N   P WNE F  ++ P  
Sbjct: 9   VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68

Query: 74  -SIILFRLLDHRTFRRDCTIGEKRLNTST 101
            +++   L+D      +  +G      S+
Sbjct: 69  ENVLEITLMDANYVMDET-LGTATFTVSS 96

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 37 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGE 94
          P+  L +   +   T  V     P+WN+ FT  +   + ++   + D    +    +G+
Sbjct: 36 PFCLLELG-NDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGK 93

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 37  PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 90
           PY+ + +            T+ +K +  PKWNEE    V P    ILF + D     RD 
Sbjct: 31  PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDD 90

Query: 91  TIGEKRLNTST 101
            +G+  +    
Sbjct: 91  FLGQVDVPLYP 101

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRR 88
          KP+P + +       K T+ V N   P WNE     +        S +   + D  T  +
Sbjct: 26 KPDPIVSVIFK-DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84

Query: 89 DCTIGE 94
          +  IG 
Sbjct: 85 NKLIGT 90

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 46.1 bits (110), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
           ++  +L+    GG     +PY+++++ YK+ +     T   K    P +NE F   +   
Sbjct: 23  IKARNLKAMDIGG---TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79

Query: 74  SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
            +    I+  ++D     R+  IG+  L+  +
Sbjct: 80  KLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY- 73
           ++    + +G  G  L  P+PY+EL++     + K TR   N   P WNE F  ++ P  
Sbjct: 24  VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 83

Query: 74  -SIILFRLLDHRTFRRDCT 91
            +++   L+D      +  
Sbjct: 84  ENVLEITLMDANYVMDETL 102

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 6   DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPK 61
           +     L++ +++    L +         P PY+++Y+  +      K TR+ + T  P 
Sbjct: 26  EDKKGQLEV-EVIRARSLTQKPGSKST--PAPYVKVYLLENGACIAKKKTRIARKTLDPL 82

Query: 62  WNEEFTVLVSPYSIILFRLL--DHRTFRRDCTIGE 94
           + +      SP   +L  ++  D+      C +G 
Sbjct: 83  YQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGV 117

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 6   DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPK 61
                VL +  + +  +L      G     +PY++L +           T+ +K +  P+
Sbjct: 27  HIDREVLIV-VVRDAKNLVPMDPNG---LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82

Query: 62  WNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNTST 101
           WNE F   +        +   + D     R+  +G      S 
Sbjct: 83  WNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 37  PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 90
           PY+ + +            T+ +K +  PKWNEE    V P    +LF + D     RD 
Sbjct: 43  PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDD 102

Query: 91  TIGE 94
            +G+
Sbjct: 103 FLGQ 106

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
           +E  +L++   GG     +PY+++++     +     T + KNT  P +NE F+  V   
Sbjct: 32  LEAKNLKKMDVGG---LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88

Query: 74  SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
            I    ++  +LD+    ++  IG+  +  ++
Sbjct: 89  QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++    L+     G     +PY++L++       N   T+ ++NT  P WNE        
Sbjct: 35  IIRAKGLKPMDSNG---LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91

Query: 73  YSIILFRLL-----DHRTFRRDCTIGEKRLN 98
              +  + L     D   F  +  IGE R +
Sbjct: 92  EEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
           + EC  L    +       NPY++ Y+  D      + T + ++T  P ++E     +  
Sbjct: 29  VKECHQLAYADEAKKR--SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86

Query: 73  YSI----ILFRLLDHRTFRRDCTIGE 94
             +    + F +  H  F R+  +GE
Sbjct: 87  SLLAQRTLQFSVWHHGRFGRNTFLGE 112

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 18  VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
           ++  HL +    G     +PY+++ + +   +     T V K T    +NE F   +   
Sbjct: 37  LKARHLPKSDVSG---LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93

Query: 74  SI----ILFRLLDHRTFRRDCTIGE 94
           S+    + F +LD     R+  IG 
Sbjct: 94  SLEEISVEFLVLDSERGSRNEVIGR 118

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVS 71
           +++ ++L    Q          I + V            TR +  +    +NE F V +S
Sbjct: 49  IIQLSNLSALLQQQD---QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMS 105

Query: 72  PYSI----ILFRLLDHRTFRRDCTIGEKRLN 98
             ++    +   +        +  +G  +++
Sbjct: 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQIS 136

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 13/87 (14%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++    L           PNPY++ Y+       + + T++ + T  P +NE        
Sbjct: 26  VMHIKDLVTEDGAD----PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYS 81

Query: 73  YSIILFRLL-----DHRTFRRDCTIGE 94
              +  R L        + R +  +G 
Sbjct: 82  KETLRQRELQLSVLSAESLRENFFLGG 108

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 43.9 bits (104), Expect = 7e-07
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 17  LVECAHLRRGGQGGGLLKPNPY--IELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP 72
           ++ C HL      G     +P+  + L  D        T++ K T  P++NEEF   +  
Sbjct: 43  IIRCVHLAAMDANG---YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 99

Query: 73  YSI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
             +    +   + D+   + +  IG  +L  S 
Sbjct: 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 37 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDH 83
          PY+ + V  K  K T+ +     P W E F     +    I  R+LD 
Sbjct: 40 PYVTVQVG-KTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDE 86

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 21/96 (21%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELY-------------VDYKNPKTTRVVKNTYQPKWN 63
           +++  +L      G     +P++++Y                +  + T+ V+ +  P+WN
Sbjct: 24  ILQARNLVPRDNNG---YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80

Query: 64  EEFTVLVSPYSIILFRLL-----DHRTFRRDCTIGE 94
           +           ++ + L     D+  F  +  +GE
Sbjct: 81  QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
           +  C +L    + G     +PY+ +Y+  D +    + T V K T  P +++ F   VS 
Sbjct: 30  VHACRNLIAFSEDG----SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85

Query: 73  YSI----ILFRLLDHRTFRRD--CTIGE 94
             +    +   + +   F       +G+
Sbjct: 86  PEVQRRTLDVAVKNSGGFLSKDKGLLGK 113

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++E   L     G      +PY+++ +         + T+ V +   P ++E F   V  
Sbjct: 33  IIEGKGLISKQPG----TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88

Query: 73  YSI---ILFRLLDH-RTFRRDCTIGEKRLN 98
                 +L  + +     R+   IG     
Sbjct: 89  EDDQKRLLVTVWNRASQSRQSGLIGCMSFG 118

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++    L     G      NPY+++Y       KN + T+ VK T +PKWN+ F      
Sbjct: 27  ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83

Query: 73  YSIILFRLL-----DHRTFR--RDCTIGEKRLNTST 101
                 R+L     D    R      +GE  +   T
Sbjct: 84  RREFRERMLEITLWDQARVREEESEFLGEILIELET 119

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++    L     G      NPY+++Y       KN + T+ VK T +PKWN+ F      
Sbjct: 24  ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 80

Query: 73  YSIILFRLL-----DHRTF--RRDCTIGEKRLNTST 101
                 R+L     D           +GE  +   T
Sbjct: 81  RREFRERMLEITLWDQARVREEESEFLGEILIELET 116

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 36 NPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 90
          NPY  + V      +N +     K T  P W+  F   ++   ++   +         + 
Sbjct: 33 NPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNVDLISET 92

Query: 91 TIG 93
          T+ 
Sbjct: 93 TVE 95

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 15  LQLVECAHL-RRGGQGGGLLKPNPYIELY---VDYKNPKTTRVVKNTYQPKWNEE--FTV 68
           ++++    L +       ++ P   +E++    D  + +T  +  N + P+W+ E  F V
Sbjct: 501 VRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV 560

Query: 69  LVSPYSIILFRLLDHRTFRRDCTIGE 94
            V   +++ F + D+ +  ++  IG+
Sbjct: 561 TVPDLALVRFMVEDYDSSSKNDFIGQ 586

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 36  NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFT---VLVSPYSIILFRLLDHRTFRRD 89
           + Y++++   +  +T  VV N   P+W ++     VL+S    +  ++ D      D
Sbjct: 415 DAYLKVFFGGQEFRT-GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRD 89
          K N Y+ L V   N K+T +     QP W ++F   ++   + +   + +       
Sbjct: 22 KFNTYVTLKVQ--NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDT 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.87
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.86
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.86
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.86
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.86
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.86
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.86
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.86
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.86
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.85
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.85
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.85
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.85
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.85
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.85
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.84
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.84
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.84
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.84
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.84
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.84
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.83
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.83
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.83
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.82
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.82
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.82
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.8
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.79
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.78
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.76
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.75
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.75
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.74
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.71
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.66
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.65
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.64
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.58
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.43
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.38
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.37
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.32
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.81
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.74
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.64
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.13
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.01
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.7
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.17

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.7e-22  Score=116.56  Aligned_cols=95  Identities=15%  Similarity=0.033  Sum_probs=81.9

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---c--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---K--NPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~--~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      +...|....+.|.|.|.+| +|+.   .+..+.+||||++++..   .  .+++|+++++++||.|||+|.|.+.    .
T Consensus        34 ~sl~y~~~~~~L~V~Vi~a~~L~~---~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~  110 (155)
T 2z0u_A           34 IALKYDEKNKQFAILIIQLSNLSA---LLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALH  110 (155)
T ss_dssp             EEEEEETTTTEEEEEEEEEECGGG---TCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHH
T ss_pred             EEEEEcCCCCEEEEEEEEccCcCC---cccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhC
Confidence            4457888899999999999 6877   35668899999999854   2  2589999999999999999999987    2


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++.++++++||++.++|+
T Consensus       111 ~~~L~~~V~d~d~~~~~d~iG~~~i~l~  138 (155)
T 2z0u_A          111 QKTLRVDVCTTDRSHLEECLGGAQISLA  138 (155)
T ss_dssp             HCEEEEEEEEECTTSCEEEEEEEEEECT
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEEHH
Confidence            5689999999999999999999999986

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=3.9e-21  Score=109.65  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             ceecccccccceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEEC---CcCceeeeeecCCCCCeeceEEEEEeCC----CC
Q psy16330          2 FLLQDYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVD---YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YS   74 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~---~~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~   74 (101)
                      .+...|....++|.|+|.+|.  .   .+..+.+||||++.+.   +..+++|+++++++||.|+|+|.|.+..    ..
T Consensus        16 ~~sl~y~~~~~~L~V~v~~a~--~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~   90 (138)
T 1wfm_A           16 HYCLDYDCQKAELFVTRLEAV--T---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA   90 (138)
T ss_dssp             EEEEEEETTTTEEEEEEEEEE--C---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred             EEEEEEeCCCCEEEEEEEEEE--c---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCC
Confidence            345678889999999999996  2   3456789999999873   3335899999999999999999999862    45


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.++++++||++.++|.
T Consensus        91 ~L~~~V~d~d~~~~dd~lG~~~i~l~  116 (138)
T 1wfm_A           91 TLTLTLRTCDRFSRHSVAGELRLGLD  116 (138)
T ss_dssp             EEEEEEEECCSSCTTSCSEEEEEESS
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEcc
Confidence            89999999999999999999999986

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.86  E-value=4.3e-21  Score=109.87  Aligned_cols=95  Identities=25%  Similarity=0.291  Sum_probs=81.1

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCCE
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSI   75 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~   75 (101)
                      +...|....+.|.|+|.+| +|+.   .+..+.+||||++.+.  +..+++|++++++.||.|+|+|.|.+.    ....
T Consensus        25 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  101 (143)
T 3f04_A           25 YSLDYDFQNNQLLVGIIQAAELPA---LDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT  101 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCC---BGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCC---CCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCE
Confidence            4557888999999999999 6876   3445789999999883  334689999999999999999999886    3479


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |.|+|||++.++++++||++.++|.
T Consensus       102 L~i~V~d~d~~~~~~~iG~~~i~l~  126 (143)
T 3f04_A          102 LVMAVYDFDRFSKHDIIGEFKVPMN  126 (143)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEGG
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEHH
Confidence            9999999999999999999999885

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=6.4e-21  Score=110.25  Aligned_cols=95  Identities=25%  Similarity=0.291  Sum_probs=81.3

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCCE
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSI   75 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~   75 (101)
                      +...|....+.|.|+|.+| +|+.   .+..+.+||||++.+.  +..+++|++++++.||.|+|.|.|.+.    ....
T Consensus        33 ~~l~y~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  109 (152)
T 1rsy_A           33 YSLDYDFQNNQLLVGIIQAAELPA---LDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT  109 (152)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCC---ccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCE
Confidence            4456888899999999999 6876   3556789999999884  334689999999999999999999886    3579


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |.|+|||++.++++++||++.+++.
T Consensus       110 L~i~V~d~d~~~~~~~iG~~~i~l~  134 (152)
T 1rsy_A          110 LVMAVYDFDRFSKHDIIGEFKVPMN  134 (152)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEGG
T ss_pred             EEEEEEECCCCCCCcEEEEEEEEch
Confidence            9999999999989999999999875

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.86  E-value=2.4e-21  Score=112.70  Aligned_cols=93  Identities=19%  Similarity=0.181  Sum_probs=76.5

Q ss_pred             ccccceEEEEEEee-EeCCCCCC-------CCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEE
Q psy16330          8 FSSVLQLLQLVECA-HLRRGGQG-------GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFR   79 (101)
Q Consensus         8 ~~~~~~l~v~i~~a-~l~~~~~~-------~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~   79 (101)
                      ....+.|.|+|.+| +|+.....       ...+.+||||.+.+++....+|+++++++||.|||+|.|.+.....|.|+
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~  104 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELA  104 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCCCEEEEE
Confidence            34567899999999 68752100       01256899999999877557999999999999999999998866799999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||++.+++|++||.+.++++
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~  125 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQ  125 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHH
T ss_pred             EEECCCCCCCCEEEEEEEEHH
Confidence            999999999999999999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=1e-21  Score=111.28  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             cccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEe
Q psy16330          5 QDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLD   82 (101)
Q Consensus         5 ~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~   82 (101)
                      .+|....+.|.|+|.+| +|+.   .+..+.+||||.+.+++. +++|++++++.+|.|+|+|.|.+. ....|.|+|||
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d   81 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLA---ADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFD   81 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCC---SSSSSCCCEEEEEEETTE-EEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEE
T ss_pred             ccccCCceEEEEEEEeeECCCC---CCCCCCcCeEEEEEECCE-EEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEE
Confidence            46888999999999999 6876   355678999999999887 589999999999999999999997 56789999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++..+++++||++.+++.
T Consensus        82 ~d~~~~~~~lG~~~i~l~   99 (133)
T 2ep6_A           82 EDGDKPPDFLGKVAIPLL   99 (133)
T ss_dssp             EETTEEEEECCBCEEEGG
T ss_pred             CCCCCCCCeeEEEEEEHH
Confidence            999988999999999875

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.86  E-value=8.9e-21  Score=111.05  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +...|.+..+.|.|+|.+| +|+.   .+..+.+||||++++.+    ..+++|++++++.||.|+|.|.|.+..    .
T Consensus        28 ~~l~y~~~~~~L~V~v~~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  104 (166)
T 2cm5_A           28 VSLMYSTQQGGLIVGIIRCVHLAA---MDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAK  104 (166)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred             EEEEEECCCCEEEEEEEEeECCCC---ccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCC
Confidence            4467888899999999999 6876   35567899999998864    246899999999999999999999862    4


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+|||++.++++++||++.+++.
T Consensus       105 ~~L~i~V~d~d~~~~~~~iG~~~i~l~  131 (166)
T 2cm5_A          105 KSLDISVWDYDIGKSNDYIGGCQLGIS  131 (166)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred             CEEEEEEEECCCCCCCcEEEeEEEecc
Confidence            599999999999999999999999986

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=107.56  Aligned_cols=95  Identities=23%  Similarity=0.333  Sum_probs=80.9

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEe-C----CCC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLV-S----PYS   74 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~-~----~~~   74 (101)
                      +-..|....+.|.|+|.+| +|+.   .+..+.+||||++.+.  +..+++|++++++.||.|+|.|.|.+ +    ...
T Consensus        17 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   93 (141)
T 2d8k_A           17 FSVGYNFQESTLTVKIMKAQELPA---KDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQR   93 (141)
T ss_dssp             EEEEECSSSCCEEEEEEEEESCCC---CSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTS
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCC---CCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccC
Confidence            4567888899999999999 6876   3556789999999984  33468999999999999999999985 3    357


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.++++++||++.+++.
T Consensus        94 ~l~i~V~d~d~~~~~~~iG~~~i~l~  119 (141)
T 2d8k_A           94 ILYLQVLDYDRFSRNDPIGEVSIPLN  119 (141)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEETT
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEhh
Confidence            89999999999989999999999986

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=6.3e-21  Score=108.66  Aligned_cols=96  Identities=25%  Similarity=0.363  Sum_probs=80.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEE-eC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVL-VS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~   73 (101)
                      +...|.+..+.|.|+|.+| +|+.   .+.+ +.+||||++.+..  ..+++|++++++.||.|+|+|.|. +.    ..
T Consensus        13 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~   89 (138)
T 1ugk_A           13 FSLEYNFERKAFVVNIKEARGLPA---MDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE   89 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCC---CBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGG
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCC---CCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhcc
Confidence            4567888999999999999 6876   3444 6789999998852  346899999999999999999995 65    23


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ..|.|+|||++.++++++||++.++|..
T Consensus        90 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~  117 (138)
T 1ugk_A           90 LALHFTILSFDRFSRDDIIGEVLIPLSG  117 (138)
T ss_dssp             CEEEEEEEEECSSCCCCCCEEEEEECTT
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEehhH
Confidence            5899999999999999999999999863

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.86  E-value=2.3e-20  Score=105.99  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=77.6

Q ss_pred             cccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEE-eC----CCC
Q psy16330          5 QDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PYS   74 (101)
Q Consensus         5 ~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~~   74 (101)
                      ..|....++|.|+|.+| +|+.    +..+.+||||++++.    +..+++|++++++.||.|+|+|.|. +.    ...
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~   88 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQR   88 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTC
T ss_pred             EEEeecCCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcC
Confidence            45666778999999999 6764    345789999999872    2335899999999999999999999 76    457


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.++++++||++.++|.
T Consensus        89 ~L~~~V~d~d~~~~~~~lG~~~i~l~  114 (134)
T 2b3r_A           89 ELQLSVLSAESLRENFFLGGITLPLK  114 (134)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEGG
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEhh
Confidence            99999999999999999999999875

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.85  E-value=3.9e-21  Score=109.94  Aligned_cols=95  Identities=22%  Similarity=0.281  Sum_probs=80.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEE-eCC----
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VSP----   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~-~~~----   72 (101)
                      +...|.+..++|.|+|.+| +|+.   .+..+.+||||++.+.+    ..+++|++++++.+|.|+|.|.|. +..    
T Consensus        20 ~~l~y~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   96 (142)
T 2chd_A           20 FSLLYDQDNSNLQCTIIRAKGLKP---MDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQ   96 (142)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCC---CCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHH
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCC---CCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHcc
Confidence            4567888899999999999 6877   35567899999999854    235899999999999999999998 541    


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++.++++++||++.++++
T Consensus        97 ~~~l~i~V~d~d~~~~d~~iG~~~i~l~  124 (142)
T 2chd_A           97 RKTLRISVCDEDKFGHNEFIGETRFSLK  124 (142)
T ss_dssp             HCEEEEEEEEECTTSCEEEEEEEEEEGG
T ss_pred             CCEEEEEEEECCCCCCCcEEEEEEEEHH
Confidence            3689999999999989999999999975

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.85  E-value=5.4e-21  Score=108.69  Aligned_cols=95  Identities=23%  Similarity=0.328  Sum_probs=80.6

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+||||++++.+.    .+++|++++++.||.|+|.|.|.+..    .
T Consensus         7 ~sl~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~   83 (138)
T 3n5a_A            7 LSLCYNPSANSIIVNIIKARNLKA---MDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRE   83 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGG
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCC---cCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCc
Confidence            4557888999999999999 6876   345678999999987532    25899999999999999999999872    2


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+|||++.++++++||++.+++.
T Consensus        84 ~~l~~~V~d~~~~~~~~~lG~~~i~l~  110 (138)
T 3n5a_A           84 TTIIITVMDKDKLSRNDVIGKIYLSWK  110 (138)
T ss_dssp             EEEEEEEEECCSSSCCEEEEEEEESSS
T ss_pred             eEEEEEEEECCCCCCCcEEEEEEEccc
Confidence            589999999999999999999999885

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.85  E-value=2.2e-20  Score=110.24  Aligned_cols=88  Identities=33%  Similarity=0.519  Sum_probs=75.6

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR   87 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~   87 (101)
                      ...++|.|+|.+| +|+.   ....+.+||||++.+++. +++|++++++.||.|+|.|.|.+.+...|.|+|||++.++
T Consensus        33 ~~~~~L~V~V~~A~~L~~---~~~~~~sDPYv~v~~~~~-~~kT~v~~~tlnP~Wne~f~f~v~~~~~L~~~V~D~d~~~  108 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQ-SKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLK  108 (173)
T ss_dssp             SCCEEEEEEEEEEEECCC---C--CCCCCEEEEEEETTE-EEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSS
T ss_pred             CCceEEEEEEEEeECCCC---cccCCCCCeEEEEEECCE-EeEccccCCCCCCeECCEEEEEeCCCCEEEEEEEECCCCC
Confidence            4567899999999 6873   234445999999999884 6999999999999999999999988889999999999999


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                      +|++||++.+++.
T Consensus       109 ~dd~lG~~~i~l~  121 (173)
T 2nq3_A          109 SDVLLGTAALDIY  121 (173)
T ss_dssp             CCEEEEEEEEEHH
T ss_pred             CCceEEEEEEEHH
Confidence            9999999999874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.85  E-value=8.3e-21  Score=109.81  Aligned_cols=95  Identities=26%  Similarity=0.249  Sum_probs=76.9

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC--ceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN--PKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~--~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+||||++.+  ++..  +++|++++++.||.|+|+|.|.+..    .
T Consensus        21 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~   97 (153)
T 1w15_A           21 VSLCYQSTTNTLTVVVLKARHLPK---SDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEE   97 (153)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTT
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCC---cCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCc
Confidence            4567888899999999999 6876   355678899999987  3322  4799999999999999999999873    2


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+|||++.++++++||++.++++
T Consensus        98 ~~l~v~V~d~d~~~~~~~lG~~~i~l~  124 (153)
T 1w15_A           98 ISVEFLVLDSERGSRNEVIGRLVLGAT  124 (153)
T ss_dssp             EEEEEEEEECCTTSCCEEEEEEEESTT
T ss_pred             eEEEEEEEeCCCCCCCcEEEEEEECCC
Confidence            589999999999999999999999875

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.85  E-value=1.3e-20  Score=106.65  Aligned_cols=88  Identities=26%  Similarity=0.474  Sum_probs=74.3

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-cCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR   87 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~   87 (101)
                      ...+|.|+|.+| +|+.   .+..+.+||||.+.+++ ...++|++++++.||.|+|.|.|.+.....|.|+|||++.++
T Consensus         3 ~~~~L~V~v~~a~~L~~---~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~l~~~v~d~d~~~   79 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAK---KDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIH   79 (132)
T ss_dssp             SEEEEEEEEEEEESCCC---CSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCCEEEEEEEGGGTT
T ss_pred             CeEEEEEEEEEeECCCC---CCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCEEEEEEEECCCCC
Confidence            456789999999 6876   45668899999999875 346899999999999999999999875556999999999886


Q ss_pred             C---CCeeEEEEEECC
Q psy16330         88 R---DCTIGEKRLNTS  100 (101)
Q Consensus        88 ~---~~~iG~~~~~l~  100 (101)
                      +   |++||++.+++.
T Consensus        80 ~~~~d~~lG~~~i~l~   95 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSN   95 (132)
T ss_dssp             SSTTTTEEEEEEECHH
T ss_pred             CCCCCCceEEEEEeHH
Confidence            5   789999999753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.85  E-value=1.5e-20  Score=109.41  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=80.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +-..|.+..++|.|+|.+| +|+.   .+..+.+||||++++...    .+++|++++++.||.|+|+|.|.+..    .
T Consensus        16 ~~l~y~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~   92 (159)
T 1tjx_A           16 FSLRYVPTAGKLTVVILEAKNLKK---MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK   92 (159)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCC---ccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCC
Confidence            4557888899999999999 6876   355678999999987521    25899999999999999999999862    4


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|+|||++.++++++||++.+++.
T Consensus        93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~  119 (159)
T 1tjx_A           93 VQVVVTVLDYDKIGKNDAIGKVFVGYN  119 (159)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred             cEEEEEEEECCCCCCCceEEEEEECCC
Confidence            589999999999999999999999985

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=9.8e-21  Score=106.63  Aligned_cols=95  Identities=25%  Similarity=0.330  Sum_probs=75.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEe-C----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-S----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~-~----~   72 (101)
                      +...|.+..+.|.|+|.+| +|+.   .+..+.+||||++.+.    +..+++|++++++.||.|+|+|.|.+ .    .
T Consensus         9 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   85 (129)
T 2bwq_A            9 IKLWFDKVGHQLIVTILGAKDLPS---REDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR   85 (129)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred             EEEEEccCCCEEEEEEEEeeCCCC---CCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhc
Confidence            4567888899999999999 6876   3556788999999872    23468999999999999999999985 3    2


Q ss_pred             CCEEEEEEEeCCCCCC--CCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRR--DCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~--~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++..++  +++||++.+++.
T Consensus        86 ~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~  115 (129)
T 2bwq_A           86 ERMLEITLWDQARVREEESEFLGEILIELE  115 (129)
T ss_dssp             GCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred             CCeEEEEEEECCcCcCcCCceeEEEEEEcc
Confidence            4699999999999876  899999999975

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.84  E-value=4.2e-20  Score=106.29  Aligned_cols=87  Identities=22%  Similarity=0.339  Sum_probs=76.1

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC-
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-   86 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~-   86 (101)
                      ..++|.|+|.+| +|+.   .+..+.+||||.+.+++. +++|++++++.||.|+|.|.|.+. +...|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQA---KDKTGSSDPYVTVQVGKT-KKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCC---CSTTSCCCEEEEEEETTE-EEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCC---CCCCCCcCeEEEEEECCE-EEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            357899999999 6876   355688999999999776 589999999999999999999987 567999999999985 


Q ss_pred             ----------CCCCeeEEEEEECC
Q psy16330         87 ----------RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ----------~~~~~iG~~~~~l~  100 (101)
                                +++++||++.++++
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~  114 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVR  114 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGG
T ss_pred             cccccccccCCCCccEEEEEEEHH
Confidence                      78999999999985

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=108.44  Aligned_cols=99  Identities=24%  Similarity=0.369  Sum_probs=80.9

Q ss_pred             ceecccccccceEEEEEEee-EeCCC-CCC---CCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC---
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRG-GQG---GGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS---   71 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~-~~~---~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~---   71 (101)
                      .+...|.+..++|.|+|.+| +|+.. ...   +..+.+||||++.+..  ..+++|++++++.||.|+|+|.|.+.   
T Consensus        16 ~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   95 (147)
T 2enp_A           16 HFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE   95 (147)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHH
T ss_pred             EEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHH
Confidence            34567889999999999999 68762 110   1235789999998752  34689999999999999999999886   


Q ss_pred             -CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         72 -PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        72 -~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                       ....|.|+|||++.++++++||++.++|.
T Consensus        96 l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~  125 (147)
T 2enp_A           96 AQRRTLLLTVVDFDKFSRHCVIGKVSVPLC  125 (147)
T ss_dssp             HHHSEEEEEEECCSTTCCSCCCEEEEEETT
T ss_pred             hccCEEEEEEEECCCCcCCcEEEEEEEech
Confidence             24589999999999999999999999986

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=4.3e-20  Score=105.31  Aligned_cols=87  Identities=24%  Similarity=0.284  Sum_probs=75.9

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEe
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLD   82 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~   82 (101)
                      ...+.|.|+|.+| +|+.   .+. +.+||||++++++. +++|++++++.||.|+|.|.|.+.     ....|.|+|||
T Consensus         4 ~~~g~L~v~v~~a~~L~~---~~~-g~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d   78 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPK---TKF-GKPDPIVSVIFKDE-KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKD   78 (140)
T ss_dssp             CBCCEEEEEEEEEESCCC---CSS-SCCCEEEEEECSSC-EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEeeCCCC---CCC-CCCCeEEEEEECCE-eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEE
Confidence            3467899999999 6876   344 78999999999876 499999999999999999999986     35799999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++.++++++||++.+++.
T Consensus        79 ~d~~~~~~~lG~~~i~l~   96 (140)
T 2dmh_A           79 FETIGQNKLIGTATVALK   96 (140)
T ss_dssp             TTCSSSCCCCEEEEEEGG
T ss_pred             CCCCCCCceEEEEEEEHH
Confidence            999999999999999875

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=4.8e-20  Score=105.39  Aligned_cols=94  Identities=19%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----Y   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~~----~   73 (101)
                      +...|.+..+.|.|.|.+| +|+.   .+..+ +||||++.+.  +.  .+++|++++++.||.|+|+|.|.+..    .
T Consensus        15 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~   90 (142)
T 2dmg_A           15 LTIRHSSQRNKLIVVVHACRNLIA---FSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQR   90 (142)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCC---SSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHH
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCC---CCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCc
Confidence            4567888899999999999 6877   35557 9999999873  22  35899999999999999999999862    3


Q ss_pred             CEEEEEEEeCCCCCC--CCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRR--DCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~--~~~iG~~~~~l~  100 (101)
                      ..|.|+|||++.+++  +++||++.+++.
T Consensus        91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~  119 (142)
T 2dmg_A           91 RTLDVAVKNSGGFLSKDKGLLGKVLVALA  119 (142)
T ss_dssp             CEEEEEEEECCCSSCCSCCCCEEEEEECC
T ss_pred             CEEEEEEEECCCccccCCcEEEEEEEecc
Confidence            589999999998753  579999999985

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.84  E-value=7.9e-20  Score=105.79  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC---CCC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS---PYS   74 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~   74 (101)
                      +...|....+.|.|+|.+| +|+..   + .+.+||||++.+.    ...+++|++++++.||.|+|+|.|.+.   ...
T Consensus        18 lsL~y~~~~~~L~V~v~~a~~L~~~---d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~   93 (153)
T 3fbk_A           18 LRLSIDAQDRVLLLHIIEGKGLISK---Q-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK   93 (153)
T ss_dssp             EEEEEEESSSEEEEEEEEEESCCCC---S-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTS
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCC---C-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCC
Confidence            4567899999999999999 68763   3 5789999999873    233589999999999999999999984   345


Q ss_pred             EEEEEEEeCCCCCC-CCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRR-DCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~-~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.+++ +++||++.+++.
T Consensus        94 ~L~i~V~d~d~~~~~d~~lG~~~i~l~  120 (153)
T 3fbk_A           94 RLLVTVWNRASQSRQSGLIGCMSFGVK  120 (153)
T ss_dssp             EEEEEEEECCSSGGGCEEEEEEEEEHH
T ss_pred             EEEEEEEeCCCCCCCCcEEEEEEEEHH
Confidence            79999999998876 899999999874

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=7.8e-21  Score=108.10  Aligned_cols=87  Identities=22%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCC-----------CCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLL-----------KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILF   78 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~-----------~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~   78 (101)
                      .+.|.|+|.+| +|++.   +.++           .+||||.+.+++....+|++.+++.||.|+|+|.|.+.....|.|
T Consensus         5 ~g~L~v~v~~a~~L~~~---d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~   81 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPT---AWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEESCCCC---HHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEE
T ss_pred             ceEEEEEEEeCcCCCCc---ccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCCCEEEE
Confidence            46899999999 68752   2222           389999999987655789999999999999999999875589999


Q ss_pred             EEEeCCCCCCCCeeEEEEEECC
Q psy16330         79 RLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        79 ~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +|||++.+++|++||++.++++
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~  103 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFE  103 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHH
T ss_pred             EEEeCCCCCCCCEEEEEEEEHH
Confidence            9999999999999999999874

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=3.3e-20  Score=107.23  Aligned_cols=90  Identities=22%  Similarity=0.323  Sum_probs=72.9

Q ss_pred             ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc-----CceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEE
Q psy16330          8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRL   80 (101)
Q Consensus         8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v   80 (101)
                      ....+.|.|+|.+| +|+.   .+..+.+||||++.+...     ..++|++++++.||.|+|.|.|.+. ....|.|+|
T Consensus        16 ~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V   92 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAK---KDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV   92 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCC---CCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence            45668899999999 6876   355678999999987631     3589999999999999999999987 556899999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||++.++++++||++.+++.
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~  112 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLY  112 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECC
T ss_pred             EECCCCcCCCeeEEEEEEHH
Confidence            99999999999999999986

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.84  E-value=5.4e-20  Score=104.45  Aligned_cols=89  Identities=21%  Similarity=0.290  Sum_probs=77.8

Q ss_pred             ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-CCCEEEEEEEeCC
Q psy16330          8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-PYSIILFRLLDHR   84 (101)
Q Consensus         8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~   84 (101)
                      ....+.|.|+|.+| +|+.   .+..+.+||||.+.+++. .++|++++ ++.+|.|+|+|.|.+. ....|.|+|||++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~   81 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLED---ADFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD   81 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSS---CCSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSS
T ss_pred             CCCcEEEEEEEEeccCCCC---cccCCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECC
Confidence            45678899999999 7877   355678999999998876 48999998 8999999999999987 4679999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      .+++|++||++.++|+
T Consensus        82 ~~~~d~~lG~~~i~l~   97 (136)
T 1wfj_A           82 VGTEDDAVGEATIPLE   97 (136)
T ss_dssp             SCTTTCCSEEEEEESH
T ss_pred             CCCCCceEEEEEEEHH
Confidence            9999999999999874

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=107.89  Aligned_cols=95  Identities=19%  Similarity=0.363  Sum_probs=79.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC----
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~----   72 (101)
                      +...|.+..++|.|+|.+| +|+..   + ..+.+||||++.+..    ..+++|++++++.||.|+|+|.|.+..    
T Consensus        14 ~sl~y~~~~~~L~V~v~~a~~L~~~---d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~   90 (148)
T 3fdw_A           14 FSLKYEQQTQSLVVHVKECHQLAYA---DEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLA   90 (148)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCS---BTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGG
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCc---ccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhC
Confidence            4567888999999999999 68762   3 357899999998752    225899999999999999999999873    


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++.++++++||++.++|.
T Consensus        91 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~  118 (148)
T 3fdw_A           91 QRTLQFSVWHHGRFGRNTFLGEAEIQMD  118 (148)
T ss_dssp             GCEEEEEEEEECGGGCEEEEEEEEEEHH
T ss_pred             ceEEEEEEEECCCCcCCcEEEEEEEEcc
Confidence            3479999999999989999999999874

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=7.2e-20  Score=105.49  Aligned_cols=87  Identities=21%  Similarity=0.281  Sum_probs=74.4

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC---CCEEEEEEEe
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLD   82 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~---~~~l~~~v~~   82 (101)
                      .++|.|+|.+| +|+.   .+..+.+||||++.+..    ..+++|++++++.+|.|+|+|.|.+..   ...|.|+|||
T Consensus        30 ~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d  106 (149)
T 1a25_A           30 REVLIVVVRDAKNLVP---MDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD  106 (149)
T ss_dssp             SSEEEEEEEEEESCCC---CSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCC---CCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence            56799999999 6876   35567899999998853    346899999999999999999999873   3589999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++.++++++||++.+++.
T Consensus       107 ~d~~~~~~~iG~~~i~l~  124 (149)
T 1a25_A          107 WDLTSRNDFMGSLSFGIS  124 (149)
T ss_dssp             CCSSSCCEEEEEEEEEHH
T ss_pred             CCCCCCCCEEEEEEEEHH
Confidence            999989999999999864

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.83  E-value=6.6e-20  Score=108.27  Aligned_cols=91  Identities=23%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             cccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc-----CceeeeeecCCCCCeeceEEEEEeC-CCCEEEEE
Q psy16330          7 YFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFR   79 (101)
Q Consensus         7 y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~   79 (101)
                      .....+.|.|+|.+| +|+.   .+..+.+||||++.+.+.     .+++|++++++.||.|+|.|.|.+. ....|.|+
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~   79 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAK---KDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFE   79 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCC---cCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEE
Confidence            445678899999999 6876   355678999999988642     2479999999999999999999997 45689999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||++.++++++||++.++|.
T Consensus        80 V~d~d~~~~d~~lG~~~i~l~  100 (176)
T 3m7f_B           80 VFDENRLTRDDFLGQVDVPLY  100 (176)
T ss_dssp             EEECC----CEEEEEEEEESC
T ss_pred             EEECCCCCCCcEEEEEEEEHH
Confidence            999999999999999999986

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.83  E-value=1.9e-20  Score=106.83  Aligned_cols=95  Identities=25%  Similarity=0.330  Sum_probs=79.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEe-C----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-S----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~-~----~   72 (101)
                      +...|.+..++|.|+|.+| +|+.   .+..+.+||||++.+.    ...+++|++++++.||.|+|.|.|.+ .    .
T Consensus        12 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~   88 (141)
T 1v27_A           12 IKLWFDKVGHQLIVTILGAKDLPS---REDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR   88 (141)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGG
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCC---cCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhc
Confidence            4557888889999999999 6876   3556789999999872    23468999999999999999999984 3    2


Q ss_pred             CCEEEEEEEeCCCCCC--CCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRR--DCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~--~~~iG~~~~~l~  100 (101)
                      ...|.|+|||++.+++  +++||++.+++.
T Consensus        89 ~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~  118 (141)
T 1v27_A           89 ERMLEITLWDQARVREEESEFLGEILIELE  118 (141)
T ss_dssp             TCEEEEEEEEBCSSSSCCBCCCEEEEEEGG
T ss_pred             CCEEEEEEEECCCCcCCCCceEEEEEEEcc
Confidence            4699999999999876  899999999875

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=2.5e-20  Score=106.56  Aligned_cols=91  Identities=19%  Similarity=0.291  Sum_probs=76.6

Q ss_pred             cccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc-------------CceeeeeecCCCCCeeceEEEEE-
Q psy16330          5 QDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK-------------NPKTTRVVKNTYQPKWNEEFTVL-   69 (101)
Q Consensus         5 ~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~-------------~~~~T~~~~~~~~P~w~e~~~~~-   69 (101)
                      ..|.  .+.|.|+|.+| +|+.   .+..+.+||||++.+.+.             .+++|++++++.||.|+|.|.|. 
T Consensus        13 l~y~--~~~L~V~v~~a~~L~~---~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~   87 (142)
T 1rh8_A           13 INYD--LGNLIIHILQARNLVP---RDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKS   87 (142)
T ss_dssp             EEEE--TTEEEEEEEEEESCCC---CSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECS
T ss_pred             EEEc--CCEEEEEEEEecCCCC---CCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECC
Confidence            3455  57899999999 6877   355688999999998753             24789999999999999999997 


Q ss_pred             eC----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         70 VS----PYSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        70 ~~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +.    ....|.|+|||++.++++++||++.++|+
T Consensus        88 v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~  122 (142)
T 1rh8_A           88 ISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS  122 (142)
T ss_dssp             CCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred             cCHHHccCCEEEEEEEECCCCCCCceEEEEEEecc
Confidence            54    46799999999999999999999999986

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.82  E-value=3.8e-20  Score=108.95  Aligned_cols=92  Identities=21%  Similarity=0.276  Sum_probs=75.8

Q ss_pred             ecccccccceEEEEEEee-EeCCCCCCCC-CCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC-CCCEE
Q psy16330          4 LQDYFSSVLQLLQLVECA-HLRRGGQGGG-LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS-PYSII   76 (101)
Q Consensus         4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~-~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l   76 (101)
                      ...|  ..+.|.|+|.+| +|+.   .+. .+.+||||++.+...    .+++|++++++.||.|+|+|.|.+. ....|
T Consensus        24 ~l~y--~~~~L~V~v~~a~~L~~---~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L   98 (171)
T 2q3x_A           24 GMED--KKGQLEVEVIRARSLTQ---KPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVL   98 (171)
T ss_dssp             EEEE--ETTEEEEEEEEEESCCC---CC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEE
T ss_pred             EEEE--CCCEEEEEEEEeeCCCC---CCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEE
Confidence            3445  578899999999 6876   343 578999999987532    2589999999999999999999886 56789


Q ss_pred             EEEEE-eCCCCCCCCeeEEEEEECC
Q psy16330         77 LFRLL-DHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        77 ~~~v~-~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|+|| |++.++++++||++.++|+
T Consensus        99 ~~~V~~d~d~~~~d~~iG~~~i~l~  123 (171)
T 2q3x_A           99 QVIVWGDYGRMDHKCFMGVAQILLE  123 (171)
T ss_dssp             EEEEEEECSTTCSSEEEEEEEECGG
T ss_pred             EEEEEEcCCCCCCCCEEEEEEEEHH
Confidence            99999 9999999999999999875

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=6.2e-20  Score=102.96  Aligned_cols=89  Identities=28%  Similarity=0.509  Sum_probs=72.7

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT   85 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~   85 (101)
                      .+.|.|+|.+| +|+.....+..+.+||||.+.+++  ..+++|++++++.||.|+|+|.|.+.  ....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            46799999999 676510002347799999999875  24689999999999999999999995  45789999999998


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      . ++++||++.++|+
T Consensus        82 ~-~~~~iG~~~i~l~   95 (126)
T 1rlw_A           82 V-MDETLGTATFTVS   95 (126)
T ss_dssp             S-CCEEEEEEEEEGG
T ss_pred             C-CCceeEEEEEEHH
Confidence            7 4889999999975

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=1.3e-18  Score=109.03  Aligned_cols=96  Identities=25%  Similarity=0.282  Sum_probs=81.7

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      .+-..|....+.|.|+|.+| +|+.   .+..+.+||||.+.+..  ...++|++++++.||.|+|+|.|.+.    ...
T Consensus         9 ~~~l~y~~~~~~L~v~v~~a~~L~~---~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~   85 (284)
T 2r83_A            9 QYSLDYDFQNNQLLVGIIQAAELPA---LDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK   85 (284)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECCCC---CSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTC
T ss_pred             EEEEEEECCCCEEEEEEEEeeCCCC---CCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcC
Confidence            34567888999999999999 6876   35567899999998853  33589999999999999999999886    246


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||.+.++++++||++.++|.
T Consensus        86 ~l~~~V~d~d~~~~~~~lG~~~i~l~  111 (284)
T 2r83_A           86 TLVMAVYDFDRFSKHDIIGEFKVPMN  111 (284)
T ss_dssp             EEEEEEEECCSSSCCCEEEEEEEEGG
T ss_pred             EEEEEEEECCCCCCCceeEEEEEcch
Confidence            99999999999989999999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.79  E-value=1.8e-18  Score=109.30  Aligned_cols=93  Identities=26%  Similarity=0.354  Sum_probs=79.8

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCCE
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSI   75 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~   75 (101)
                      +...|....+.|.|+|.+| +|+.   .+..+.+||||++++.  +..+++|++++++.||.|+|+|.|.+.    ....
T Consensus        11 ~~l~y~~~~~~L~v~v~~a~~L~~---~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~   87 (296)
T 1dqv_A           11 FALRYLYGSDQLVVRILQALDLPA---KDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK   87 (296)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCC---CSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCC---cCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCE
Confidence            4567888999999999999 6876   3556789999999983  444689999999999999999999986    2358


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEEE
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRLN   98 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~~   98 (101)
                      |.|+|||++.++++++||++.++
T Consensus        88 L~~~V~d~d~~~~~~~iG~~~i~  110 (296)
T 1dqv_A           88 LHFSVYDFDRFSRHDLIGQVVLD  110 (296)
T ss_dssp             CEEEEEECCSSSCCCEEEEEECC
T ss_pred             EEEEEEEcCCCCCCceEEEEEec
Confidence            99999999999999999999884

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.78  E-value=2.7e-18  Score=97.21  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             cceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         11 VLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        11 ~~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      ++.|.|+|.+|++..     ..+.+||||++.  .. ..+|++++ ++.||.|||+|.|.+. ....|.|+|||++ +++
T Consensus         4 ~~~L~V~V~~A~~l~-----~~g~~DPYv~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~   74 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDG-----AQEKFNTYVTLK--VQ-NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIW   74 (131)
T ss_dssp             CEEEEEEEEEEECSS-----CGGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSC
T ss_pred             ceEEEEEEEEeECCC-----CCCCcCeEEEEE--ec-CEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCC
Confidence            478999999995322     246789999998  23 35666665 6999999999999997 5668999999999 889


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      |++||++.++|+
T Consensus        75 dd~iG~~~i~l~   86 (131)
T 2cjt_A           75 DTMVGTVWIPLR   86 (131)
T ss_dssp             EEEEEEEEEEGG
T ss_pred             CCeEEEEEEEHH
Confidence            999999999985

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=8.5e-18  Score=105.37  Aligned_cols=94  Identities=22%  Similarity=0.279  Sum_probs=78.4

Q ss_pred             ecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeCC----CC
Q psy16330          4 LQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----YS   74 (101)
Q Consensus         4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~~----~~   74 (101)
                      ...|.+..+.|.|.|.+| +|+.   .+..+.+|||+++.+.  +.  .+++|++++++.||.|+|.|.|.+..    ..
T Consensus       142 ~l~~~p~~~~l~v~v~~a~~L~~---~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  218 (284)
T 2r83_A          142 SLRYVPTAGKLTVVILEAKNLKK---MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKV  218 (284)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGE
T ss_pred             EEEecCcCCceEEEEEEeECCCC---cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCce
Confidence            345677788999999999 6876   3556789999999874  22  25799999999999999999999873    34


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.++++++||++.++++
T Consensus       219 ~l~i~V~d~d~~~~~~~iG~~~i~l~  244 (284)
T 2r83_A          219 QVVVTVLDYDKIGKNDAIGKVFVGYN  244 (284)
T ss_dssp             EEEEEEEECCSSSCCCEEEEEEEETT
T ss_pred             EEEEEEEeCCCCCCCcEEEEEEECCC
Confidence            79999999999999999999999985

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.75  E-value=7e-18  Score=113.73  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=74.7

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEEeCCC
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHRT   85 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~~~~~   85 (101)
                      ..+.|.|+|.+| +|+.    +.++.+||||++.+++. .++|+++++++||.|+|.|.|.+.   ....|.|+|||+|.
T Consensus       392 ~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~-~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~  466 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQ-EFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY  466 (540)
T ss_dssp             TEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTE-EEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred             cccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCE-eeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence            367899999999 5754    45678999999999876 499999999999999999998753   56789999999999


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      .++|++||++.++|.
T Consensus       467 ~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          467 GWDDDLLGSCDRSPH  481 (540)
T ss_dssp             SSCCEEEEEEEECCC
T ss_pred             CCCCCEEEEEEEEee
Confidence            999999999999875

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.75  E-value=1.6e-17  Score=97.47  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=67.0

Q ss_pred             cceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         11 VLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        11 ~~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      ++.|.|+|.+|++..     ..+.+||||++.  .. ..+|++++ ++.||.|||+|.|.+. ....|.|+|||++ ++.
T Consensus        13 ~~~L~V~V~~A~~l~-----~~g~~DPYV~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG-----AQEKFNTYVTLK--VQ-NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CCEEEEEEEEEECSS-----CGGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSC
T ss_pred             eEEEEEEEEEEECCC-----CCCCCCeEEEEE--ec-ceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCC
Confidence            568999999995322     246789999998  23 36777776 5999999999999997 5678999999999 889


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      |++||++.++|+
T Consensus        84 dd~iG~~~i~L~   95 (167)
T 2cjs_A           84 DTMVGTVWIPLR   95 (167)
T ss_dssp             CEEEEEEEEEGG
T ss_pred             CceEEEEEEEHH
Confidence            999999999985

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.74  E-value=2.9e-17  Score=109.92  Aligned_cols=87  Identities=25%  Similarity=0.406  Sum_probs=75.3

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCC
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTF   86 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~   86 (101)
                      ..+.|.|+|.+| +|+.   .+..|.+||||.+.+++. +++|++++++.||.|++.|.|.+.  ....|.|+|||++.+
T Consensus       385 ~~~~l~v~v~~a~~L~~---~d~~~~sdpyv~v~~~~~-~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKA---CKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             -CEEEEEEEEEEESCCC---CSTTSCCCEEEEEEETTE-EEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCceEEEEeceeecCCC---CCCCCCCCeEEEEEECCe-eccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            456899999999 6876   456688999999999776 599999999999999999999886  346799999999999


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      ++|++||++.+++.
T Consensus       461 ~~~d~lG~~~~~l~  474 (510)
T 3jzy_A          461 SPDDFLGRTEIPVA  474 (510)
T ss_dssp             SSCCEEEEEEEEHH
T ss_pred             CCCCceEEEEEEHH
Confidence            99999999999874

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.71  E-value=6.7e-18  Score=106.63  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=78.4

Q ss_pred             ecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeCC----CC
Q psy16330          4 LQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YS   74 (101)
Q Consensus         4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~   74 (101)
                      ...|.+..+.|.|.|.+| +|+.   .+..+.+|||+++++.  +  ..+++|++++++.||.|+|.|.|.+..    ..
T Consensus       144 sl~y~~~~~~l~v~v~~a~~L~~---~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  220 (296)
T 1dqv_A          144 SLCYLPTAGLLTVTIIKASNLKA---MDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV  220 (296)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCC---CSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred             EEEeccccceeEEEEEEeecCCc---cCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCc
Confidence            446777789999999999 6876   3556778999999875  3  235899999999999999999998862    34


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+|||++.++++++||++.++++
T Consensus       221 ~L~i~V~d~d~~~~~~~iG~~~i~l~  246 (296)
T 1dqv_A          221 GLSIAVVDYDCIGHNEVIGVCRVGPE  246 (296)
T ss_dssp             CCCCEEEECCSSSCCEEEEECCCSSC
T ss_pred             EEEEEEEeCCCCCCCceEEEEEECCc
Confidence            79999999999999999999998875

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.66  E-value=1.2e-15  Score=104.58  Aligned_cols=88  Identities=18%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             ccceEEEEEEee-EeCCCCCCC--CCCCCCcEEEEEECCc----CceeeeeecCC-CCCeeceEEEEEeC-C-CCEEEEE
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGG--GLLKPNPYIELYVDYK----NPKTTRVVKNT-YQPKWNEEFTVLVS-P-YSIILFR   79 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~--~~~~~dpy~~v~~~~~----~~~~T~~~~~~-~~P~w~e~~~~~~~-~-~~~l~~~   79 (101)
                      ....|.|+|..| +|+..   +  ..+.+||||++.+.+.    .+++|++++++ .||.|+|+|.|.+. + ...|.|+
T Consensus       495 ~~~~L~V~Vi~A~~L~~~---d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKV---NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCC---SSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEE
T ss_pred             cceEEEEEEEEcCCCCcc---cccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEE
Confidence            456899999999 68763   3  2477999999998542    35899999986 99999999999987 3 3589999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||++.++++++||++.++|+
T Consensus       572 V~D~D~~~~dd~iG~~~ipl~  592 (624)
T 1djx_A          572 VEDYDSSSKNDFIGQSTIPWN  592 (624)
T ss_dssp             EEECCSSSCCEEEEEEEEEGG
T ss_pred             EEEcCCCCCCceeEEEEEEHH
Confidence            999999999999999999975

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.65  E-value=1.5e-15  Score=86.19  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC----CCCEEEEEEEeCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS----PYSIILFRLLDHR   84 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~   84 (101)
                      .+-|.|.+..| +|+        +..|||+++.+.+. +++|++++ ++.+|.|+|.|.|.+.    ....|.|.|+|++
T Consensus        20 ~msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~-k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           20 HMALIVHLKTVSELR--------GRADRIAKVTFRGQ-SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             CEEEEEEEEEEESCC--------SCEEEEEEEEETTE-EEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             cEEEEEEEEEecCCC--------CCCCCeEEEEEecc-ceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            35577888888 454        36899999999776 59999998 6999999999999986    4569999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      .++++.+||++.++|+
T Consensus        91 ~v~~nrlIG~~~i~Lq  106 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQ  106 (144)
T ss_dssp             TTSCCEEEEEEEEESH
T ss_pred             cccCCCEEEEEEEEhH
Confidence            9999999999999985

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.64  E-value=5.6e-16  Score=107.54  Aligned_cols=90  Identities=28%  Similarity=0.496  Sum_probs=73.8

Q ss_pred             ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCC
Q psy16330         10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHR   84 (101)
Q Consensus        10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~   84 (101)
                      ..+.|.|+|.+| +|+.....+..+.+||||++++.+  ..+++|++++++.+|.|+|+|.|.+.  ....|.|+|||++
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            467899999999 676500002347799999999874  23689999999999999999999997  4568999999999


Q ss_pred             CCCCCCeeEEEEEECC
Q psy16330         85 TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        85 ~~~~~~~iG~~~~~l~  100 (101)
                      .++ |++||++.++|.
T Consensus        96 ~~~-ddfIG~v~I~L~  110 (749)
T 1cjy_A           96 YVM-DETLGTATFTVS  110 (749)
T ss_dssp             SSS-CEEEEEECCBST
T ss_pred             CCC-CceeEEEEEEHH
Confidence            998 999999999875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.58  E-value=1.2e-14  Score=100.36  Aligned_cols=89  Identities=20%  Similarity=0.284  Sum_probs=74.2

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEE
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRL   80 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v   80 (101)
                      .....|.|.+..| +|+.   .+..+.+|||+++.+.    ...+++|++++++.||.|+|.|.|.+.   ....|.++|
T Consensus       169 ~~~~~L~V~v~~a~~L~~---~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v  245 (674)
T 3pfq_A          169 IDREVLIVVVRDAKNLVP---MDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEI  245 (674)
T ss_dssp             ECSSEEEEEEEEEESCCC---CSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEE
T ss_pred             eccceeeeeeecccccCC---CCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEE
Confidence            3457788999998 6876   4566889999999872    233589999999999999999999886   345799999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||++..+++++||++.++++
T Consensus       246 ~d~d~~~~dd~iG~~~i~l~  265 (674)
T 3pfq_A          246 WDWDLTSRNDFMGSLSFGIS  265 (674)
T ss_dssp             EECCSSSCCEECCBCCCBTT
T ss_pred             eecccccccccccccccchh
Confidence            99999999999999888764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.43  E-value=6.4e-15  Score=98.48  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=9.2

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCC---CCCeeceEEEEEeC-CCCEEEEEEEeC
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNT---YQPKWNEEFTVLVS-PYSIILFRLLDH   83 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~---~~P~w~e~~~~~~~-~~~~l~~~v~~~   83 (101)
                      ...+.|.|+|.+| +|+..   +     ||||.+.+++....||++++++   .||.|+|+|.|.+. ....|.++|||.
T Consensus         8 r~~~~L~V~VieAk~L~~~---d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~   79 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPK---K-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRD   79 (483)
T ss_dssp             EEEECC-----------------------------------------------------CCEECC---------------
T ss_pred             eeccEEEEEEEEcCCcCCC---C-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEec
Confidence            3456788999999 67652   2     8999999987656799999998   99999999999854 457899999994


Q ss_pred             -C---CCCCCCeeEEEEEECC
Q psy16330         84 -R---TFRRDCTIGEKRLNTS  100 (101)
Q Consensus        84 -~---~~~~~~~iG~~~~~l~  100 (101)
                       +   ..++|++||.+.++++
T Consensus        80 ~d~~~~~~~d~~lG~v~i~l~  100 (483)
T 3bxj_A           80 SDKKRKKDKAGYVGLVTVPVA  100 (483)
T ss_dssp             ---------------------
T ss_pred             CCccccCCCCceEEEEEEEHH
Confidence             4   3678899999999875

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.38  E-value=2.8e-12  Score=90.50  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-----cCceeeeeecC-CCCCeece-EEEEE-eC--CCCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-----KNPKTTRVVKN-TYQPKWNE-EFTVL-VS--PYSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-----~~~~~T~~~~~-~~~P~w~e-~~~~~-~~--~~~~l~~~v   80 (101)
                      ..|.|+|..| +|+.       ...||||+|.+.+     ..+++|+++++ +.||.||| .|.|. +.  ....|.|.|
T Consensus       725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V  797 (885)
T 3ohm_B          725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA  797 (885)
T ss_dssp             EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence            4789999999 5764       2479999999854     12479999986 69999999 69998 54  345899999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||++    +++||++.++|+
T Consensus       798 ~D~d----ddfiG~~~lpL~  813 (885)
T 3ohm_B          798 FEEG----GKFVGHRILPVS  813 (885)
T ss_dssp             EETT----TEEEEEEEEETT
T ss_pred             EcCC----ccEEeeEEEEHH
Confidence            9987    789999999986

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.37  E-value=4.7e-12  Score=88.90  Aligned_cols=78  Identities=15%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc------CceeeeeecC-CCCCeeceE-EEEE-eC--CCCEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK------NPKTTRVVKN-TYQPKWNEE-FTVL-VS--PYSIILFR   79 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~------~~~~T~~~~~-~~~P~w~e~-~~~~-~~--~~~~l~~~   79 (101)
                      ..|.|+|..| +|+.       ...||||+|.+.+.      .+++|+++++ +.||.|||+ |.|. +.  ....|.|.
T Consensus       650 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~  722 (816)
T 3qr0_A          650 GTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII  722 (816)
T ss_dssp             EEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEE
T ss_pred             eEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEE
Confidence            5789999999 5764       24799999998541      2479999986 699999998 9998 65  33589999


Q ss_pred             EEeCCCCCCCCeeEEEEEECC
Q psy16330         80 LLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |||++    +++||++.++|+
T Consensus       723 V~D~d----ddfiG~~~ipL~  739 (816)
T 3qr0_A          723 VSEEN----GKFIGHRVMPLD  739 (816)
T ss_dssp             EEETT----SCEEEEEEEEST
T ss_pred             EEecC----CCeeeEEEEEHH
Confidence            99975    689999999986

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.32  E-value=1.1e-11  Score=87.01  Aligned_cols=79  Identities=15%  Similarity=0.239  Sum_probs=62.7

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-----cCceeee-eecC-CCCCeece-EEEE-EeC--CCCEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-----KNPKTTR-VVKN-TYQPKWNE-EFTV-LVS--PYSIILF   78 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-----~~~~~T~-~~~~-~~~P~w~e-~~~~-~~~--~~~~l~~   78 (101)
                      .+.|.|+|..| +|+.       +..||||+|.+.+     ..+++|+ ++++ +.||.||| .|.| .+.  ....|.|
T Consensus       677 ~~~L~V~Visa~~L~~-------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~  749 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRV  749 (799)
T ss_dssp             CEEEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEE
T ss_pred             eeeEEEEEEeccccCc-------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEE
Confidence            35799999999 5764       2579999999843     1257899 7764 79999999 6999 775  3348999


Q ss_pred             EEEeCCCCCCCCeeEEEEEECC
Q psy16330         79 RLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        79 ~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|||++    +++||++.++|+
T Consensus       750 ~V~D~d----~d~iG~~~ipl~  767 (799)
T 2zkm_X          750 AVMEEG----NKFLGHRIIPIN  767 (799)
T ss_dssp             EEEETT----TEEEEEEEEEGG
T ss_pred             EEEEeC----CCccceEeeehh
Confidence            999986    689999999975

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.81  E-value=9e-08  Score=53.07  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcC---ceee-eeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330         12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR   87 (101)
Q Consensus        12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~---~~~T-~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~   87 (101)
                      .-|+|.+..+.+-..  .......||||.+.++...   ..+| ...+++..|.|+++|...+.....|.+.|++...  
T Consensus         6 ~flRi~~~~~~~~~~--~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSL--QAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAE--   81 (126)
T ss_dssp             CEEEEEEEEEECSSC--CCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEEEEETT--
T ss_pred             ccEEeeecccccccc--CCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCEEEEEEEEcCCC--
Confidence            445666666543110  1111247999999875332   2355 4455699999999999999888999999996543  


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                        +|++.++++++
T Consensus        82 --~fvAn~tV~~e   92 (126)
T 1yrk_A           82 --EPVSEVTVGVS   92 (126)
T ss_dssp             --EEEEEEEEEHH
T ss_pred             --CeeeEEEEEHH
Confidence              79999998764

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.74  E-value=1.2e-07  Score=53.23  Aligned_cols=85  Identities=14%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             cceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcC---ceee-eeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCC
Q psy16330         11 VLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTF   86 (101)
Q Consensus        11 ~~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~---~~~T-~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~   86 (101)
                      ..-|+|......+-... .......||||.|.++...   ..+| ...+++..|.|+++|...+.....|.|.|++... 
T Consensus         9 ~~flRi~l~~~~~~~~~-~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~-   86 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQ-SCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNV-   86 (138)
T ss_dssp             CCCEEEEEEEEECCCCC-CSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEEECSSC-
T ss_pred             CcceEEEeeccccCCCC-CcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCeEEEEEEEcCCC-
Confidence            34466666666432210 0012357999999876431   2566 4455689999999999888888999999996443 


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                         +|++.++++++
T Consensus        87 ---~fVAn~tV~~e   97 (138)
T 2enj_A           87 ---DLISETTVELY   97 (138)
T ss_dssp             ---SCCEEEEEESH
T ss_pred             ---CeeeEEEEEHH
Confidence               79999999874

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.64  E-value=0.046  Score=33.20  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=41.0

Q ss_pred             ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC----CCCCeeEEEEEECC
Q psy16330         48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF----RRDCTIGEKRLNTS  100 (101)
Q Consensus        48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~----~~~~~iG~~~~~l~  100 (101)
                      .++|.+...+.+|.|+|++.+.++    +...|.|+++....-    .....+|-+.++|-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            478888888999999999999998    345899999875432    22347899988874

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.13  E-value=0.62  Score=34.67  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFR   79 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~   79 (101)
                      ...+.|+|..+ ++..    ......+.||.+.+  ++..   ...|... ...+|.|+|.+.|.+.     ....|.|+
T Consensus       354 ~~~f~v~i~~~~~~n~----~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~t  428 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV----NIRDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLS  428 (1091)
T ss_dssp             CSEEEEEEEEESCCCC----CCSSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             CCCEEEEEEEecCCCC----CccccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEE
Confidence            45678888888 3432    11123466887765  3322   1233322 3457889999999875     46699999


Q ss_pred             EEeCCCC----CCCCeeEEEEEECC
Q psy16330         80 LLDHRTF----RRDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~----~~~~~iG~~~~~l~  100 (101)
                      +|+....    ..+..+|.+.++|-
T Consensus       429 l~~~~~~~~~~~~~~~lg~~n~~lf  453 (1091)
T 3hhm_A          429 ICSVKGRKGAKEEHCPLAWGNINLF  453 (1091)
T ss_dssp             ECCCCCCC-------CCEEEEEESB
T ss_pred             EEEecCccCcccccceeEEeeeeeE
Confidence            9986532    12357899988874

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.01  E-value=0.43  Score=34.92  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFR   79 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~   79 (101)
                      ...+.|+|..+ ++..    +  ...+.|+.+.+  ++..   ...|..+.-..+|.|+|.+.|.+.     ....|.|+
T Consensus       216 ~~~f~i~i~~~~~~~~----~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~t  289 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNA----D--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFA  289 (940)
T ss_dssp             CSEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             CCceEEEEEEecccCC----C--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEE
Confidence            45678888887 3432    1  23466777654  4321   244555544678999999999875     46699999


Q ss_pred             EEeCCCC--C----------CCCeeEEEEEECC
Q psy16330         80 LLDHRTF--R----------RDCTIGEKRLNTS  100 (101)
Q Consensus        80 v~~~~~~--~----------~~~~iG~~~~~l~  100 (101)
                      +|+...-  +          .+..+|.+.++|-
T Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lF  322 (940)
T 2wxf_A          290 LYAVVEKAKKARSTKKKSKKADCPIAWANLMLF  322 (940)
T ss_dssp             EEEEC----------------CEEEEEEEEESB
T ss_pred             EEEecCCccCccccccccccccceEEEEeeeEE
Confidence            9985321  1          2348899888864

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=89.17  E-value=1.5  Score=32.81  Aligned_cols=66  Identities=8%  Similarity=0.045  Sum_probs=40.9

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEE--ECCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELY--VDYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL   80 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~--~~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v   80 (101)
                      ..+.|+|..+ ++..    +  ...+.|+.+.  -++..   ...|..+.-+.+|.|+|.+.|.+.     ....|.|++
T Consensus       353 ~~f~i~i~~~~~~~~----~--~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti  426 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNT----E--ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAV  426 (1092)
T ss_dssp             SEEEEEECCCCCCCC----C--SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEEC
T ss_pred             CCEEEEEEEeccCCC----C--CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEE
Confidence            4567777776 3432    1  2245565543  34321   234444444678999999999875     456899999


Q ss_pred             EeC
Q psy16330         81 LDH   83 (101)
Q Consensus        81 ~~~   83 (101)
                      |+.
T Consensus       427 ~~~  429 (1092)
T 2y3a_A          427 YAV  429 (1092)
T ss_dssp             CCC
T ss_pred             EEe
Confidence            985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	5e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-07
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-07
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-06
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-06
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-06
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-06
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-05
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-05
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	5e-04
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	0.002

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.5 bits (107), Expect = 5e-08
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSI 75
          LV    L            +PY++L    ++ K+         P+WNE F   VS   + 
Sbjct: 16 LVSAKGLEDADFLN---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTE 72

Query: 76 ILFRLLDHRTFRRDCTIGEKRLN 98
          +  ++ D      D  +GE  + 
Sbjct: 73 LKAKIFDKDVGTEDDAVGEATIP 95

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-07
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-- 74
           + E   L    +      P   + +  + K+   TRV++ T  P ++E FT    PY+  
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 75  ---IILFRLLDHRTFRRDCTIGEKRLNTST 101
               + F +L    F RD  IGE  +  S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 42.2 bits (98), Expect = 9e-07
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 7   YFSSVLQLLQLVECAHLR--------RGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTY 58
            F+ +L++ ++ E   L+          G        +PYI L VD      T   + T 
Sbjct: 3   VFNGLLKI-KICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTN 61

Query: 59  QPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLN 98
            P W++EF   V     I   +        D  +    + 
Sbjct: 62  SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQ 101

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSP 72
           +++  HL +    G     +PY+++ + +       K T V K T    +NE F   +  
Sbjct: 21  VLKARHLPKSDVSG---LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77

Query: 73  ----YSIILFRLLDHRTFRRDCTIGEKRLNTST 101
                  + F +LD     R+  IG   L  + 
Sbjct: 78  ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 110

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           + +  +L      G     +PY++L +      ++ + T+ +K +  P+WNE F   +  
Sbjct: 21  VRDAKNLVPMDPNG---LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 77

Query: 73  Y---SIILFRLLDHRTFRRDCTIGEKRLNTST 101
                 +   + D     R+  +G      S 
Sbjct: 78  SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 109

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP 72
           ++    L     G      NPY+++Y       KN + T+ VK T +PKWN+ F      
Sbjct: 20  ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 76

Query: 73  Y-----SIILFRLLDHRTFR--RDCTIGEKRLNTST 101
                  ++   L D    R      +GE  +   T
Sbjct: 77  RREFRERMLEITLWDQARVREEESEFLGEILIELET 112

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 4e-06
 Identities = 14/87 (16%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 15 LQLVECAHLRRGGQGGGLLKPNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVL 69
          ++++    L +  +       +P + + +     D  + +T  +  N + P+W+ EF   
Sbjct: 8  VRIISGQQLPKVNKNKNS-IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 66

Query: 70 VSP--YSIILFRLLDHRTFRRDCTIGE 94
          V+    +++ F + D+ +  ++  IG+
Sbjct: 67 VTVPDLALVRFMVEDYDSSSKNDFIGQ 93

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 7e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 34  KPNPYIELYVDYKN----PKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRT 85
             +PY+++++         K T + KNT  P +NE F+  V         ++  +LD+  
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104

Query: 86  FRRDCTIGEKRLNTST 101
             ++  IG+  +  ++
Sbjct: 105 IGKNDAIGKVFVGYNS 120

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 36 NPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 90
           P+  + +         KT    K T  P+W   F   +    +I   L+        + 
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDPMSEV 84

Query: 91 TIGEKRLN 98
          T+G   L 
Sbjct: 85 TVGVSVLA 92

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 34  KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL----DHRT 85
             +P+++L++      K    T++ K T  P++NEEF   +    +    L     D+  
Sbjct: 35  YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 94

Query: 86  FRRDCTIGEKRLNTST 101
            + +  IG  +L  S 
Sbjct: 95  GKSNDYIGGCQLGISA 110

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 5e-04
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 17  LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
           ++    + +G  G  L  P+PY+EL++     + K TR   N   P WNE F  ++ P  
Sbjct: 9   VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68

Query: 75  IILFRL-LDHRTFRRDCTIGEKRLNTST 101
             +  + L    +  D T+G      S+
Sbjct: 69  ENVLEITLMDANYVMDETLGTATFTVSS 96

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 14/104 (13%)

Query: 6   DYFSSVLQLL-QLVECAHLRRGGQGGGLLKPNPYIELYV---DYKNPKTTRVVKNTYQPK 61
           DY     +L    +E       G        + Y++  V          T + K      
Sbjct: 20  DYDCQKAELFVTRLEAVTSNHDG------GCDCYVQGSVANRTGSVEAQTALKKRQLHTT 73

Query: 62  WNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
           W E   + ++    P + +   L     F R    GE RL    
Sbjct: 74  WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.88
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.87
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.86
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.86
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.85
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.84
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.83
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.82
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.81
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.8
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.8
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.8
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.79
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.78
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.78
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.64
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.54
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.46

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-22  Score=112.38  Aligned_cols=88  Identities=33%  Similarity=0.528  Sum_probs=76.8

Q ss_pred             cccceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330          9 SSVLQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR   87 (101)
Q Consensus         9 ~~~~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~   87 (101)
                      ++.++|.|+|.+|+ ++.   .+..+.+||||.+.+++. .++|++++++.||.|+|.|.|.+.+...|.|+|||++.++
T Consensus         3 ~~~~~L~v~v~~A~~~~~---~~~~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~V~d~d~~~   78 (133)
T d2nq3a1           3 TMKSQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQ-SKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLK   78 (133)
T ss_dssp             SCCEEEEEEEEEEEECCC---C--CCCCCEEEEEEETTE-EEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSS
T ss_pred             CcceEEEEEEEEeECCCc---CCCCCCcCeEEEEEECCe-EEeeEEEEecccEEEcceEEEEEEecceeEEEEEEccCCC
Confidence            56789999999995 554   345577999999999987 4899999999999999999999988789999999999999


Q ss_pred             CCCeeEEEEEECC
Q psy16330         88 RDCTIGEKRLNTS  100 (101)
Q Consensus        88 ~~~~iG~~~~~l~  100 (101)
                      +|++||++.++|+
T Consensus        79 ~d~~iG~~~i~L~   91 (133)
T d2nq3a1          79 SDVLLGTAALDIY   91 (133)
T ss_dssp             CCEEEEEEEEEHH
T ss_pred             CCceEEEEEEEHH
Confidence            9999999999874

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7.6e-22  Score=110.32  Aligned_cols=94  Identities=26%  Similarity=0.352  Sum_probs=80.4

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCCE
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSI   75 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~   75 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+||||++.+.  +..+++|++++++.+|.|+|.|.|.+.    ....
T Consensus         9 ~sl~y~~~~~~L~V~V~~a~~L~~---~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~   85 (130)
T d1dqva1           9 FALRYLYGSDQLVVRILQALDLPA---KDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK   85 (130)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCC---CSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred             EEEEEECCCCEEEEEEEeeeCCcc---ccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCe
Confidence            4567999999999999999 6876   3556788999999984  334589999999999999999999986    3457


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRLNT   99 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~~l   99 (101)
                      |.|+|||++.++++++||++.+++
T Consensus        86 L~v~V~d~~~~~~d~~iG~~~i~~  109 (130)
T d1dqva1          86 LHFSVYDFDRFSRHDLIGQVVLDN  109 (130)
T ss_dssp             CEEEEEECCSSSCCCEEEEEECCC
T ss_pred             EEEEEEEcCCCCCCceEEEEEECc
Confidence            999999999999999999999874

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=113.05  Aligned_cols=88  Identities=19%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC
Q psy16330          9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF   86 (101)
Q Consensus         9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~   86 (101)
                      ...+.|.|+|.+| +|+.   .+..|.+||||.+.+++. +++|++++++.||.|+|.|.|.+. +...|.|+|||++.+
T Consensus         3 ~~~G~L~V~v~~A~~L~~---~d~~g~~Dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLA---ADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCC---SSSSSCCCEEEEEEETTE-EEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCC---CCCCCCcCeEEEEEcCCe-EEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCC
Confidence            4568899999999 6876   456688999999999877 589999999999999999999997 567899999999999


Q ss_pred             CCCCeeEEEEEECC
Q psy16330         87 RRDCTIGEKRLNTS  100 (101)
Q Consensus        87 ~~~~~iG~~~~~l~  100 (101)
                      ++|++||++.++|+
T Consensus        79 ~~d~~lG~~~i~l~   92 (126)
T d2ep6a1          79 KPPDFLGKVAIPLL   92 (126)
T ss_dssp             EEEEECCBCEEEGG
T ss_pred             cCcceEEEEEEEHH
Confidence            88999999999875

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.9e-21  Score=108.94  Aligned_cols=95  Identities=26%  Similarity=0.321  Sum_probs=80.8

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcCceeeeeecCCCCCeeceEEEEEeC----CCCE
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSI   75 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~   75 (101)
                      +...|.....+|.|.|.+| +|+.   .+..+.+||||++.+  ++..+++|++++++.+|.|+|.|.|.+.    ....
T Consensus        25 ~sl~y~~~~~~L~V~V~~a~~L~~---~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~  101 (143)
T d1rsya_          25 YSLDYDFQNNQLLVGIIQAAELPA---LDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT  101 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCE
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCC---CCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCce
Confidence            4457888899999999999 6876   355577899999987  2344589999999999999999999886    4568


Q ss_pred             EEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         76 ILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        76 l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      |.|+|||.+.++++++||.+.++|+
T Consensus       102 L~i~V~d~d~~~~~~~iG~~~i~L~  126 (143)
T d1rsya_         102 LVMAVYDFDRFSKHDIIGEFKVPMN  126 (143)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEGG
T ss_pred             EEEEEEEcCCCCCCcEEEEEEEEch
Confidence            9999999999989999999999975

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=4.1e-21  Score=107.51  Aligned_cols=91  Identities=20%  Similarity=0.260  Sum_probs=75.6

Q ss_pred             cccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEE
Q psy16330          7 YFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILF   78 (101)
Q Consensus         7 y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~   78 (101)
                      +....+.|.|.|.+| +|+.   .+..+.+||||++++.    +..+++|++++++.+|.|+|.|.|.+.   ....|.|
T Consensus        10 ~~~~~~~L~V~V~~a~~L~~---~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i   86 (132)
T d1a25a_          10 AHIDREVLIVVVRDAKNLVP---MDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSV   86 (132)
T ss_dssp             EEESSSEEEEEEEEEESCCC---CSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEE
T ss_pred             EEecCCEEEEEEEeeeCCCC---CCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeE
Confidence            334567899999999 6876   4556788999999872    233589999999999999999999986   2457999


Q ss_pred             EEEeCCCCCCCCeeEEEEEECC
Q psy16330         79 RLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        79 ~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      +|||++.+++|++||.+.++++
T Consensus        87 ~V~d~d~~~~d~~iG~~~i~l~  108 (132)
T d1a25a_          87 EIWDWDLTSRNDFMGSLSFGIS  108 (132)
T ss_dssp             EEEECCSSSCCEEEEEEEEEHH
T ss_pred             EEEecCCCCCCcEeEEEEEeHH
Confidence            9999999999999999999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=6.5e-21  Score=107.12  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=77.7

Q ss_pred             ccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-CCCEEEEEEEe
Q psy16330          6 DYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-PYSIILFRLLD   82 (101)
Q Consensus         6 ~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~~~~l~~~v~~   82 (101)
                      .+....+.|.|+|.+| +|+.   .+..+.+||||.+.+++. ..+|++++ ++.||.|+|.|.|.+. ....|.|+|||
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~---~d~~g~~Dpyv~v~~~~~-~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d   79 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLED---ADFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFD   79 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSS---CCSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECC
T ss_pred             CCCCCcEEEEEEEEEeeCCCC---CCCCCCCCccEEEEEeee-eEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEE
Confidence            3456678999999999 6876   456688999999998876 47888887 4899999999999987 56789999999


Q ss_pred             CCCCCCCCeeEEEEEECC
Q psy16330         83 HRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        83 ~~~~~~~~~iG~~~~~l~  100 (101)
                      ++.+++|++||++.++|.
T Consensus        80 ~d~~~~d~~iG~~~i~L~   97 (136)
T d1wfja_          80 KDVGTEDDAVGEATIPLE   97 (136)
T ss_dssp             SSSCTTTCCSEEEEEESH
T ss_pred             ecCCCCCCEEEEEEEEhH
Confidence            999999999999999974

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.8e-20  Score=105.31  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330          2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS----P   72 (101)
Q Consensus         2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~----~   72 (101)
                      .+...|.+..++|.|.|.+| +|+.   .+..+.+||||.+.+.    ...+++|++++++.+|.|+|.|.|.++    .
T Consensus         5 ~l~l~Y~~~~~~L~V~v~~a~nL~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~   81 (137)
T d2cm5a1           5 LVSLMYSTQQGGLIVGIIRCVHLAA---MDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA   81 (137)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred             EEEEEEECCCCEEEEEEEEEECCCC---CCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHcc
Confidence            35678999999999999999 6876   3455778999999872    223478999999999999999999987    2


Q ss_pred             CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ...|.|.+|+.+..+++++||++.+++.
T Consensus        82 ~~~l~v~v~~~~~~~~~~~iG~~~i~l~  109 (137)
T d2cm5a1          82 KKSLDISVWDYDIGKSNDYIGGCQLGIS  109 (137)
T ss_dssp             GCEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred             ccEEEEEeeeCCCCCCCCEEEEEEeCcc
Confidence            4589999999999999999999999885

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-20  Score=106.04  Aligned_cols=96  Identities=25%  Similarity=0.350  Sum_probs=79.1

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCC-CCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEE-eC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLL-KPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~-~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~   73 (101)
                      +...|.....+|.|+|.+| +|+.   .+..+ .+||||++.+.  +..+++|++++++.+|.|+|.|.|. +.    ..
T Consensus        13 ~sl~Y~~~~~~L~V~V~~a~~L~~---~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~   89 (138)
T d1ugka_          13 FSLEYNFERKAFVVNIKEARGLPA---MDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE   89 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCC---CBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGG
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCC---CCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHccc
Confidence            5568999999999999999 6876   23333 47999999983  3445899999999999999999996 43    24


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      ..|.|+|||.+.++++++||++.++|+.
T Consensus        90 ~~L~~~V~d~d~~~~~~~iG~~~i~L~~  117 (138)
T d1ugka_          90 LALHFTILSFDRFSRDDIIGEVLIPLSG  117 (138)
T ss_dssp             CEEEEEEEEECSSCCCCCCEEEEEECTT
T ss_pred             ceEEEEEEECCCCCCCcEEEEEEEEccc
Confidence            5899999999999999999999999863

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=8.9e-20  Score=104.70  Aligned_cols=95  Identities=22%  Similarity=0.304  Sum_probs=80.1

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+||||++++..  .  ..++|++.+++.+|.|+|.|.|.++    ..
T Consensus        16 ~sl~Y~~~~~~L~V~V~~a~~L~~---~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~   92 (157)
T d1uowa_          16 FSLRYVPTAGKLTVVILEAKNLKK---MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK   92 (157)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred             EEEEEcCCCCEEEEEEEEEEEccc---ccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCc
Confidence            4568999999999999999 6876   35557899999998732  1  1368999999999999999999987    24


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|++|+.+.++++++||++.+++.
T Consensus        93 ~~l~i~v~d~~~~~~~~~iG~~~i~l~  119 (157)
T d1uowa_          93 VQVVVTVLDYDKIGKNDAIGKVFVGYN  119 (157)
T ss_dssp             CEEEEEEEECCSSSCCCEEEEEEEETT
T ss_pred             cEEEEEEcccCCCCCCceeEEEEEecc
Confidence            589999999999999999999999874

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3e-20  Score=104.63  Aligned_cols=95  Identities=26%  Similarity=0.260  Sum_probs=75.9

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCc--CceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYK--NPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~--~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+|||+++.+  ++.  .+++|++++++.+|.|+|+|.|.++    ..
T Consensus         6 ~sl~Y~~~~~~L~V~v~~a~~L~~---~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~   82 (138)
T d1w15a_           6 VSLCYQSTTNTLTVVVLKARHLPK---SDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEE   82 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTT
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCC---CCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCc
Confidence            4567999999999999999 6876   345567899999987  222  2468999999999999999999986    23


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|.+||.+.++++++||++.+++.
T Consensus        83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~  109 (138)
T d1w15a_          83 ISVEFLVLDSERGSRNEVIGRLVLGAT  109 (138)
T ss_dssp             EEEEEEEEECCTTSCCEEEEEEEESTT
T ss_pred             cEEEEEEEeCCCCCCCCEEEEEEEcch
Confidence            479999999999999999999999875

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.82  E-value=4e-20  Score=103.95  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=75.1

Q ss_pred             cceEEEEEEee-EeCCCC--------CCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEE
Q psy16330         11 VLQLLQLVECA-HLRRGG--------QGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL   81 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~--------~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~   81 (101)
                      .+.|.|+|.+| +|++..        .....+..||||.+.+++....+|++.+++.+|.|+|.|.|.+.....|.|+||
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V~   84 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVF   84 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecCCceEEEEE
Confidence            47789999999 676510        011345689999999988755789999999999999999999986678999999


Q ss_pred             eCCCCCCCCeeEEEEEECC
Q psy16330         82 DHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        82 ~~~~~~~~~~iG~~~~~l~  100 (101)
                      |++.+++|++||.+.++|+
T Consensus        85 d~~~~~~d~~iG~~~i~l~  103 (136)
T d1gmia_          85 HDAPIGYDDFVANCTIQFE  103 (136)
T ss_dssp             ECCSSSSCEEEEEEEEEHH
T ss_pred             EecCCCCceeEEEEEEEHH
Confidence            9999999999999999874

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.2e-20  Score=102.14  Aligned_cols=89  Identities=28%  Similarity=0.509  Sum_probs=71.9

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT   85 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~   85 (101)
                      .++|.|+|.+| +|+.....+..+.+||||.+.+++  ..+++|+++.++.+|.|+|+|.|.+.  ....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999 687621112246789999999864  23589999999999999999999987  34579999999986


Q ss_pred             CCCCCeeEEEEEECC
Q psy16330         86 FRRDCTIGEKRLNTS  100 (101)
Q Consensus        86 ~~~~~~iG~~~~~l~  100 (101)
                      . +|++||++.++|+
T Consensus        82 ~-~d~~lG~~~i~L~   95 (126)
T d1rlwa_          82 V-MDETLGTATFTVS   95 (126)
T ss_dssp             S-CCEEEEEEEEEGG
T ss_pred             C-CCCeEEEEEEEHH
Confidence            5 5789999999985

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-19  Score=100.48  Aligned_cols=92  Identities=20%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS   74 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~   74 (101)
                      +...|.....+|.|+|.+| +|+.      .+.+||||++.+..   ...++|++++++.+|.|+|.|.|.+.    ...
T Consensus        17 ~sl~y~~~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~   90 (138)
T d1wfma_          17 YCLDYDCQKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA   90 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred             EEEEECCCCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccce
Confidence            4567888999999999999 5643      25679999998742   22478999999999999999999986    346


Q ss_pred             EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         75 IILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        75 ~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      .|.|+||+.+.++++++||++.++|.
T Consensus        91 ~L~~~V~d~~~~~~~~~iG~~~i~L~  116 (138)
T d1wfma_          91 TLTLTLRTCDRFSRHSVAGELRLGLD  116 (138)
T ss_dssp             EEEEEEEECCSSCTTSCSEEEEEESS
T ss_pred             EEEEEEeeecccccceeeeEEEEEhH
Confidence            89999999999999999999999986

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.8e-19  Score=99.08  Aligned_cols=95  Identities=26%  Similarity=0.348  Sum_probs=73.7

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEE-eC----C
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----P   72 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~   72 (101)
                      +...|.+...+|.|+|.+| +|+.   .+..+.+||||++.+.    ...+++|++++++.+|.|+|.|.|. +.    .
T Consensus         5 l~l~y~~~~~~L~V~V~~a~~L~~---~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~   81 (125)
T d2bwqa1           5 IKLWFDKVGHQLIVTILGAKDLPS---REDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR   81 (125)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred             EEEEEECCCCEEEEEEEEeECCCC---cCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcC
Confidence            3456999999999999999 6876   3555778999999872    2234799999999999999999996 44    2


Q ss_pred             CCEEEEEEEeCCCCC--CCCeeEEEEEECC
Q psy16330         73 YSIILFRLLDHRTFR--RDCTIGEKRLNTS  100 (101)
Q Consensus        73 ~~~l~~~v~~~~~~~--~~~~iG~~~~~l~  100 (101)
                      ...|.|+|||.+.++  ++++||++.++|+
T Consensus        82 ~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~  111 (125)
T d2bwqa1          82 ERMLEITLWDQARVREEESEFLGEILIELE  111 (125)
T ss_dssp             GCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred             CCEEEEEEEECCCCCCCCCeeEEEEEEEch
Confidence            458999999998753  4569999999975

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.7e-20  Score=104.59  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             ecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc-------------CceeeeeecCCCCCeeceEEEEE
Q psy16330          4 LQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK-------------NPKTTRVVKNTYQPKWNEEFTVL   69 (101)
Q Consensus         4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~-------------~~~~T~~~~~~~~P~w~e~~~~~   69 (101)
                      -..|.  .+.|.|.|.+| +|+.   .+..+.+||||++++...             .+++|++++++.+|.|+|.|.|.
T Consensus        12 sl~y~--~~~L~V~V~~A~~L~~---~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~   86 (142)
T d1rh8a_          12 QINYD--LGNLIIHILQARNLVP---RDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYK   86 (142)
T ss_dssp             EEEEE--TTEEEEEEEEEESCCC---CSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEEC
T ss_pred             EEEEe--CCEEEEEEEEeECCCC---cCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEe
Confidence            34564  57899999999 6876   456678999999987311             13679999999999999999987


Q ss_pred             e-C----CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330         70 V-S----PYSIILFRLLDHRTFRRDCTIGEKRLNTST  101 (101)
Q Consensus        70 ~-~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~  101 (101)
                      . .    ....|.|+|||++.++++++||++.++|..
T Consensus        87 ~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~  123 (142)
T d1rh8a_          87 SISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS  123 (142)
T ss_dssp             SCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTS
T ss_pred             eecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHH
Confidence            4 3    456899999999999999999999999863

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=7.8e-19  Score=98.03  Aligned_cols=88  Identities=17%  Similarity=0.290  Sum_probs=67.9

Q ss_pred             ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecC-CCCCeeceEEEEEeC--CCCEEEEEEEeC
Q psy16330         12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKN-TYQPKWNEEFTVLVS--PYSIILFRLLDH   83 (101)
Q Consensus        12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~-~~~P~w~e~~~~~~~--~~~~l~~~v~~~   83 (101)
                      .+|.|+|.+| +|+.. ..+..+.+||||++++.+    ..+++|+++++ +.||.|+|+|.|.+.  ....|.|+|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~-~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKV-NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCC-C-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCC-CCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            4689999999 68642 023446789999998732    33588888875 579999999999886  345799999999


Q ss_pred             CCCCCCCeeEEEEEECC
Q psy16330         84 RTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        84 ~~~~~~~~iG~~~~~l~  100 (101)
                      +..++|++||++.++|+
T Consensus        83 d~~~~d~~iG~~~i~l~   99 (131)
T d1qasa2          83 DSSSKNDFIGQSTIPWN   99 (131)
T ss_dssp             CTTTCCEEEEEEEEEGG
T ss_pred             cCCCCCcEEEEEEEEEe
Confidence            99999999999999985

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.4e-18  Score=96.59  Aligned_cols=81  Identities=21%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330         11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR   88 (101)
Q Consensus        11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~   88 (101)
                      ++.|.|+|..| +|...      +..||||.+.+++. +.+|.++++ .+|.|+|.|.|.+. +...|.|+|||.+.. .
T Consensus         1 ~~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~-k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~   71 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNV-KSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-W   71 (128)
T ss_dssp             CEEEEEEEEEEECSSCG------GGCEEEEEEEETTE-EEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-C
T ss_pred             CeEEEEEEEEEECCCCC------CCcCeEEEEEeCCE-EEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-C
Confidence            35789999999 45541      35799999999876 588888865 59999999999997 677899999999876 5


Q ss_pred             CCeeEEEEEECC
Q psy16330         89 DCTIGEKRLNTS  100 (101)
Q Consensus        89 ~~~iG~~~~~l~  100 (101)
                      |++||++.++|+
T Consensus        72 d~~lG~~~I~L~   83 (128)
T d2cjta1          72 DTMVGTVWIPLR   83 (128)
T ss_dssp             EEEEEEEEEEGG
T ss_pred             CcceEEEEEEeh
Confidence            889999999985

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=8.2e-20  Score=103.57  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=79.5

Q ss_pred             eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330          3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----PY   73 (101)
Q Consensus         3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----~~   73 (101)
                      +...|.+..++|.|.|.+| +|+.   .+..+.+||||.+.+...    .+++|++++++.+|.|+|.|.|.+.    ..
T Consensus        11 ~sl~Y~~~~~~L~V~V~~a~nL~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~   87 (145)
T d1dqva2          11 FSLCYLPTAGLLTVTIIKASNLKA---MDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVEN   87 (145)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCC---CSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGS
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCC---cCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCC
Confidence            5568999999999999999 6876   345577899999987432    2478999999999999999999876    34


Q ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330         74 SIILFRLLDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ..|.|.+|+.+..+++++||++.+++.
T Consensus        88 ~~l~v~v~d~~~~~~~~~iG~~~i~l~  114 (145)
T d1dqva2          88 VGLSIAVVDYDCIGHNEVIGVCRVGPE  114 (145)
T ss_dssp             CCCCCEEEECCSSSCCEEEEECCCSSC
T ss_pred             CEEEEEEEecCCCCCCcEEEEEEECch
Confidence            579999999999999999999998875

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.2e-15  Score=83.03  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             EEEEEEeeEeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCCC
Q psy16330         14 LLQLVECAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD   89 (101)
Q Consensus        14 l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~~   89 (101)
                      +.+.+...++...  ....+.+||||.+++++    ...++|++.++++||.|||+|.|.+.....|.|.||+++    +
T Consensus         5 ~~~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~~~l~i~V~d~d----d   78 (123)
T d1bdya_           5 LRISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTTCEEEEEEEEET----T
T ss_pred             EEEEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccccEEEEEEEEcc----c
Confidence            4455555444331  23346789999999853    234678888999999999999999987788999999975    6


Q ss_pred             CeeEEEEEECC
Q psy16330         90 CTIGEKRLNTS  100 (101)
Q Consensus        90 ~~iG~~~~~l~  100 (101)
                      +++|.+.+++.
T Consensus        79 ~~~g~~~i~l~   89 (123)
T d1bdya_          79 DPMSEVTVGVS   89 (123)
T ss_dssp             EEEEEEEEEHH
T ss_pred             cccCccEEehh
Confidence            79999888753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.4e-14  Score=77.63  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=55.9

Q ss_pred             eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-----cCceeeeee--cCCCCCeeceE-EEE-EeC--CCCEEEEEE
Q psy16330         13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-----KNPKTTRVV--KNTYQPKWNEE-FTV-LVS--PYSIILFRL   80 (101)
Q Consensus        13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-----~~~~~T~~~--~~~~~P~w~e~-~~~-~~~--~~~~l~~~v   80 (101)
                      +|.|+|.+| .|++.       ..||||++++-+     ..+.+|++.  .++.||.|+|. +.+ ...  ....|.|.|
T Consensus         2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence            688999999 57662       479999998732     233455443  56899999976 333 233  234899999


Q ss_pred             EeCCCCCCCCeeEEEEEECC
Q psy16330         81 LDHRTFRRDCTIGEKRLNTS  100 (101)
Q Consensus        81 ~~~~~~~~~~~iG~~~~~l~  100 (101)
                      ||++    +++||++.++++
T Consensus        75 ~D~d----~~~lG~~~ipl~   90 (122)
T d2zkmx2          75 MEEG----NKFLGHRIIPIN   90 (122)
T ss_dssp             EETT----TEEEEEEEEEGG
T ss_pred             ECCC----CCEEEEEEEEcc
Confidence            9975    689999999985